dmo_1986

Name	Class	Family	Strand
T-rich	Low_complexity	Low_complexity	+
Homo6	DNA	hAT-Pegasus	+

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## ATCGACTTAGCTCGTCGCCCTGATCAAGAATATATATACTTTGTGGGGTCTGCCACGCCTCCTTCTGCCTGTTACATACATTTCAACAAAACCATTATACCCTGATTTCCCATTTTCAATGGGTTCAGGGTATAAAAATAAATAAATATTAAAGAATTAAATATAAATAAATAATATACGTACATAAATAACCCATTGCAGATACCGCCACGGGAGTCGTGGAACGGCGAGCTGATTGGCTACACCGTGAA ************************************************..............((((.(((.....)))..............(((((((((((...((((((...)))))).)))))))))))..............................................................))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	V110 male body	M060 embryo
........................................................................................................ATTTCCCATTTTCAATGGGTTCAGG..........................................................................................................................	25	0	20	0.20	4	4	0	0
......TTAGCTCGTCGCCCTGATCAAGAATC...........................................................................................................................................................................................................................	26	1	20	0.05	1	0	1	0
......TTAGCTCGTCGCCCTGATCAAGAATAT..........................................................................................................................................................................................................................	27	0	20	0.05	1	0	0	1
.....CTTAGCTCGTCGCCCTGATC..................................................................................................................................................................................................................................	20	0	20	0.05	1	0	1	0

TAGCTGAATCGAGCAGCGGGACTAGTTCTTATATATATGAAACACCCCAGACGGTGCGGAGGAAGACGGACAATGTATGTAAAGTTGTTTTGGTAATATGGGACTAAAGGGTAAAAGTTACCCAAGTCCCATATTTTTATTTATTTATAATTTCTTAATTTATATTTATTTATTATATGCATGTATTTATTGGGTAACGTCTATGGCGGTGCCCTCAGCACCTTGCCGCTCGACTAACCGATGTGGCACTT ************************************************..............((((.(((.....)))..............(((((((((((...((((((...)))))).)))))))))))..............................................................))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V049 head	M046 female body	M060 embryo
....................................................................................................................................................................................................................................CTCGACCAGCCGATGTGTCACT.	22	3	2	0.50	1	1	0	0
.................GGGACTAGTTCTTATATATA......................................................................................................................................................................................................................	20	0	20	0.25	5	0	5	0
.......................................................................................................................ACCCAAGTCCCATATTTTTATTTATTT.........................................................................................................	27	0	13	0.08	1	0	1	0
.................................................................................................ATGGGACTAAAGGGTAAAAGT.....................................................................................................................................	21	0	20	0.05	1	1	0	0
.............CAGCGGGACTAGTTCTTATAT.........................................................................................................................................................................................................................	21	0	20	0.05	1	0	0	1
.........................................................GGAGGAAGACGGACAATGTATGTAAA........................................................................................................................................................................	26	0	20	0.05	1	0	0	1
........................................................................................................................CCCAAGTCCCATATTTTTATTT.............................................................................................................	22	0	20	0.05	1	0	1	0

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6540:17836634-17836884 -	dmo_1986	ATCGACTTAGCTCGTCGCCCTGATCAAGAATATATATACTTTGTGGGGTCTGCCACGCCTCCTTCTGCCTG---TTACATACATT-------T--CAACAAAACCATTATACCCTGAT-TTCCCATT---TT-CAATGGGTTCAGGGTATAAAAATAAA--------------------------------------------------------------------------------------------TAA-------ATATT--AAAGAA------TT---------------------------AAATAT-------AAATAAATAATAT---------------------ACGT---------------------------------------------A-CATAA---------------AT--AACCC-----------------------------ATT------------------------GCAGATACC-------------------------GCCACGGGAGTCGTGGAACG-----GCGAGCT-----------G-ATTGGCTACAC-------CGTGAA
droVir3	scaffold_13050:3365485-3365731 +		ATCGATTCGGCTATTGGCGCTGATCAAGAATATATATACTTTATGGGGTCGGAGATGCTTCCTTCTGCCTG---TTACATACATTTGGATTTT--GCACAAATACAATATACCCT--TATACCCATT---TT-TAATGGGTTCAGGGTATAAGAATACA-----------------------------ATA-ACTATTTTTTAAAGAACAAATATCAAAT----------------------------------AT-ATAT--------------------------------------------------ATAT---------------------------------------------TAT-----------------------------------------------------------------T--AACGA-----------------------------AC--------------------------TGCTTGTT-------------------------TCTAGGTGGGCCGCGC--CG-----GCTGGCT----CATCGGT-T------------------TCTCTG
droGri2	scaffold_15245:15086187-15086417 +		ATCGACTCGACTGTTGATCCTGATCAGGAATATAAATACTTTATGGGGTCGAAGTTGTTTCCTTCTGTCTG---TTGCATACTTT-------T--GCACAAAACCATTATACCCACTT-TTAGCAAT---TTCAAATAGGTA-CTGGGATAAAAAGCGA------------------------------GC--------------------------------------------------------------A-------A-------------------------------------CCGAGAAGC-------------AA---T---TATCT---------------------TAAC---------------------------------------------T-ATTAA----TAATAT-------------------------AATTTATTTA--------CTT------------------------TCAGTTATCG-----CTGAAAAATA------------A---------------------------------------G-AATGGCTACGC-------CGTAAA
droWil2	scf2_1100000004943:265040-265257 +		ATCGACTCGGTTGTTGATCCTGATCAAGAATATATATACTTTGTGGGGTCGGAGATGCTTCCTTCTGCCTG---TTACATACATT-------T--TGGCGACTTTAATATACCAT-----------TTCACC-CTATGGGTGTATGGTATAAAAACAAT-------CG-------------------------------------------------------------------------------------A-------ATGC----AACAA------CT---------------------------GAAGTT-------ACGCTGATAATA-----------------------------------------------------------GTA----------------TTAACATTAT-----GT--AAATT-----------------------------TTT------------------------TCAAATACC-------------------------CCGAG-------------------------------CG----C-AAT-------GG-------TCAAAC
dp5	Unknown_singleton_1571:589-840 +		ATCGACTCGGCTATTGATGCTGATCGAGAATAT--ATACTTTATGGGTTCGGAAACGATTCCTTCTGGACG---TTTCACACACATCCATTTTAACTACAAATCTAATATTCCCT-----------GTTAAG-CTATTG--AGCGTTTTTAACA-A--------------------------------------------------------------CTGTTGCAATT--TGAATT------------AATGA-------AAGTC--AAGAGG---------------------------------CTGTTTATAATTCACAATTTATT----TGTATATGTA----------------------------------------------------------------------------------------AACCA-AC--------------------TT---ATC------------------------GCGTATGTA------CATA----TGGGAATGAT-------------------TG----GGGCGAAC-----------G-AT--------------------TG
droPer2	scaffold_2:91467-91723 -		ATCGACTCGGCTATTGATGCTGATCAAGAATATATATACTTTATGGGGTCGGAAACGATTCCTTCTGGACG---TTACACACATC--CACTTATACCACAAATCTAATATACCCC--AATACTCAT--------TTTGAGTATCGGGTATAAAAAAACACAACAGCCAATTAAAGC-----------------------------------------------------------------ATAAAAAA-----AGC-GAAATAT----GATGG-AAATGAA---------------------------AAAGTG-------ATACTATT----GTGAA-----------------ATCT------------------------------------------------------------------------------------------------GCAGCAATA-------------------------------GTG---TAGCAC----------------------CGACATTACCGA---------------C----AG----C-ATC----------------GGTGAA
droAna3	scaffold_13111:113926-114145 -		ATCGACTCAGGAGGTGATCCTGATCAAGAATATATATACTTTATAGGGTCGGAGATGTCTCCTTCACTGCG---TTGCACAGTTT-------T--GACCAAAATTATAATACCCT-----------CT-------GC-----AAGGGTATAAAAAACAA------------------------------AG-AATAATATTTGAACTTA------------------------------------------------------------ACCGG-CGATA-------------------AATAAAC-------------AAAA---------------------------------------------------------------------------------------AA---------------AT--ATCCC-----------------------------ATCTTTCCA------------------AGAGTTACCA-----CTTA----GGCGAATCAT-------------------CG-----GCCAGCT-----------G-AT--------------------CG
droBip1	scf7180000396506:11437-11675 +		ATCAACTCAGGAGGTGATCCTGATCAAGAATATATATACTTTATAGGGTCGGAGATGTCTCCTTCACTGCG---TTGCACACTTT-------T--GACCAAAATTATAATACCCT-----------CT-------GC-----AAGGGTATAAAAACAAA--------AACGAAAAG------------------------------------------------------------------------------------------------------TT------------------------------------------------------------------------------------------------------------CTAAAATA----------------AAAACTATATGCAAGATTTTATTC-AGTTAAATCTTGCATAAAACTC------A----------------------------AAAA----------------------------ACCAGCGAAAAAGTGAAAAA-----GGGAGCT-----------G-AAGGGATACCC-------CTCGCA
droKik1	scf7180000302468:1171938-1172201 +		AAAGACTCCCCTGTTGATGCTGATCAAGAATATATATACTTTATAGGGTCGGAAACGTCTCCTTCACTGCG---TTGCAAACTTC-------T--GACTGAAATTATAATACCCT-----------GCAAGG-GTATGTGGTACGTGGTTCCACACAAC------TCA--------------------ATT-GCGACT-----------------------------------------------------------------CTTTAAAAAGAAAAATGTTAAATTGAAACAAACCTT---------------C-------GCCTAGAT---AC------------------------------------------------------------------ATAT------------------------------------------AGTATATATACC------ATT------------------------TTAGTAA-------------------------TCGGC-CAGAATT--TTTAGAA-----GCAAGCT-----------G-TTTGCCATCAC-------TTTGCC
droFic1	scf7180000454002:6944-7154 -		-TCGATTCAGATCGTGATGCTGATCAAGAATATATATACTTTATGGGGTCTGAGGTGTCTCCTTCACTGCG---TTGCAAACTTC-------T--GACTGAAATTATAATACCCT-----------T-TGCT-TTGCA-----AGGGTATACAAATTAA--------------------------------------------------------------------------------------------TAA-------A-GCG--ATAAAG-AAATTTT---------------------------AAATTT-------AATTTAAT----TTTAA-----------------ATTT------------------------------------------------------------------------------------------------AAAGGCATA-------------------------------GTT---TAGTACTAA-------------TGGCTCTAGGAGC----------------------------------------------------TGTAGA
droEle1	scf7180000489026:738-967 -		ATCGACTCGGCTGTTGATCCTGATCATGAATATATATACTTTATATGGTCGGAAACGCTTCCTTCTACCTG---TCACACACGTT-------T--CAACAAATACAATATACCCT-----------CTTACT-CTACGAGTAATGGGTATAAAAAGCTT-------TG------AGTCCTATGAAACGGAG-A-----------------ACTCACTACTGTGTCAATA-------------------------------------------------------------------------------------T------------------------------------------------------------------------------------------------------------------------------------TGCATATAAGCA------GTA------------------------ATACATG-------------------------TGGCCACGGGAGTTCCGA---------------T----AATGCGA-A------------------TTACTT
droRho1	scf7180000763463:262-490 -		ATCGACTCGGCTAGTGACCCTGATCAAGAATATATATACTTTATAGGGTCGGAAACGCTTCCTTCTAGCTG---TTACATACTTT-------T--GCACGAATACAATATACCCT-----------TTTACT-CTACGAGTAACGGGTATAAACAGATCTAGTTAATCAAAAACAA--------------------TT---------------------------------------AAAAATGTCGAA-----CGCAAAT--------------------------------------------------AAAA---------------------------------------------TAT----------------------------------TAAC---------------------------------------------------------------------------------------------AAGTGCA-------------------------ACCGGTAAAGCCACG------------AAGCCAAGTCG----CG-ATCG--------------GCAACA
droBia1	scf7180000297968:9228-9467 -		ATCGACTCGGCTAGTGATCCTGATCAAGAATATA------TTATGCGGTCGGAAATGCTTCCTTTTACATG---TTACATACTTT-------C--TGACGAATCTAGTATACCCT-----------TTTACT-CTACAAGTAACGGGTATAACAAACAA------------------------------GCATA---CATGTG----------------------------TACATT------------AAACA-------AAATT--AATA--------------------------------------------------------------------------------------------------------------------------TCC---CCTGCTCTATAA-------------------------------------------------------------AACAGTCAAATTACTCATGGCAAATA---------------------------ATCATGAAAGCTGTGCCACACTCAGGTCAGAT-----------G-ATTG------------------AC
droTak1	scf7180000415261:585829-586080 +		ATCGACTCGGCTAGTGACCCTGATGAAGAATATATATACTTTATAGGGTCGGAAACGCTTCCTTCTCCCTG---TTACATACTTT-------T--GCACGAATTCAATATATAAT-----------TTTACT-CTACGAGTAACGGGTATAAACAGCAG--------------------------------------------------------------------------------------------TAA-------ATATTTGAAAAGGAAAATC-------------------CCAAAAAAC-------------GA---T---TATTT---------------------TCGG---------------------------------------------T-CATAA------------------------------------------------------------------------CATTT---CTGGTTATT-------------------------TCCATGGGAGCTGTAGGATGTAGTGGTCA--------------G-ATTCGTTTCATTCCAACTTATATA
droEug1	scf7180000409182:47870-48124 -		ATCATCTTCGCTATTGATCCTGATCAAGAATATATATATTTTATAGAGTCGGAACCGCTTCCTTCTACCTG---TTACATACTTG-------T--CAACGAATCCAGTATACCCT-----------TTCACT-CTACGAGTAACGGGTATAAAAATATG--------------------------------------------------------------------------------------------TCA-------AAGCG--AGAAAA---------------------------------CAAATACGAATTGGCAACCAAAT----TACAGACAGAAACTAAACTAAA----GATAAACAATGGCTACGGGCAACGAATTTT------------------------------------------------------------------------------------------------------------------------------------------------------GGGACA-----GCAATTAAAGCTG----C-AAC-------GA-------CGAAAA
dm3	chr2R:1081369-1081607 -		ATCGATTCAGCTATTTATCCTGATCAAGAATATTTATACCTTATATGATCGGAATAGCTTCCTTCTACCTG---TTACATACATT----------CAACGAATATAGAATACCAT-----ACCCATTTTACT-CTATGATTAACGGGTATAATAATCAA------------------------------A----------------------------CTGTATCCATATTTATTTGAAAGATGTAGAA-----ATC-AAA--------------------------------------------------A--------------------------------------------------------------------------------TATATTAACTC-----------------------------ACCCA-------------------------------------------------------GCAAATAGT-------------------------GTAACAAGAGTTATACATTA-----TTTAGCT-----------A-CTTG-----------------ATT
droSim2	2l:23284075-23284271 +		ATC-----GGCATTTGAACCTGATCAAGAATATATATACTTTATATGATCTGAAACGCTTTCTTCTGCCTG---TTACATACTTT-------T--CAACCAATCTAGTATACGCT-----------TTTACT-GTACAAGTAACTGGTATAAAAATATACATTTAACAAAAAAAAC------------------------------------------------------------------------------------------------------TT------------------------------------------------------------------------------------------------------------TTAATATATTAATTTACTTTATAA---------------AT--ATACT-----------------------------ATG------------------------TAAGA-------------------------------------------------------------------------CAC----------------AGTCAC
droSec2	scaffold_229:8521-8725 +		ATCGACTCGGCTATTGACCATGATCAAGAATATATATGCAA--CATGGTAGGACACGATTCCTTCTGCCTGTTGTTACATACTTT-------T--CAACGAATCTAGTGTACTCT-----------TTTACT-CCACGAGTAACGGGTACTAAAATAGA-----------------------------A--------------------------------------------------------------TAA-------ATAT----AAAGG-AAATA-------------------ATGAAAA-------------TAGG---A---AATAT---------------------TCCG---------------------------------------------T-CAA-----------------ACTTAGCCC-ACTTTA-----------------------------------------------------ATCCT----------------------------------------------------------------------------------------GACACG
droYak3	v2_chrUn_6908:756-977 -		ATCTACTCGGCTATTGATCCTGATCAAGATTATATATACTTTATATTGTCGGAAAAGCTTCCTTCTGCCTG---TTACATACTTT-------T--CAACGAATCTAGTATACCCT-----------TTCACT-CTACGAGTAACGGGTATAATAAAACA-----------------------------GAA-AACCTCACGCGAAGTCAACAAATTAGAT----------------------------------ATC-TAA--------------------------------------------------ATAG-------AACACGCT----GCGGA-----------------AACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAGAGACATCTAAGA-----ACTATCT-----------G-TTTG-------------------G
droEre2	scaffold_4820:1768825-1769013 +		TTCGACTCGGTTATTGATCCTGATCAAGAATATATATACTTTATATGGTCGGAAATGCTTCCTTCTGCCTG---TTACATACTTT-------T--AAACGAATCTAGTATACCCT-----------TTTACT-CTACGAGTAACGGGTATAAAAAGAGT------------------------------------------------------------------------------------------------------------------------ACTAATCAAAAATTAGGTTC---------------T-------GGGTAAAT---AT------------------------------------------------------------------TTAGTCCATAA---------------ATTCAACCC------------------------------------------------------------------------------------------------------------------------------------------------------------ATT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

ATCGACTTAGCTCGTCGCCCTGATCAAGAATATATATACTTTGTGGGGTCTGCCACGCCTCCTTCTGCCTG---TTACATACATT-------T--CAACAAAACCATTATACCCTGAT-TTCCCATT---TT-CAATGGGTTCAGGGTATAAAAATAAA--------------------------------------------------------------------------------------------TAA-------ATATT--AAAGAA------TT---------------------------AAATAT-------AAATAAATAATAT---------------------ACGT---------------------------------------------A-CATAA---------------AT--AACCC-----------------------------ATT------------------------GCAGATACC-------------------------GCCACGGGAGTCGTGGAACG-----GCGAGCT-----------G-ATTGGCTACAC-------CGTGAA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
....................................................................................................................AT-TTCCCATT---TT-CAATGGGTTCAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.20	4	4	0	0	0	0	0
......TTAGCTCGTCGCCCTGATCAAGAATC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	1
......TTAGCTCGTCGCCCTGATCAAGAATAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	1	0
.....CTTAGCTCGTCGCCCTGATC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1

droVir3

ATCGATTCGGCTATTGGCGCTGATCAAGAATATATATACTTTATGGGGTCGGAGATGCTTCCTTCTGCCTG---TTACATACATTTGGATTTT--GCACAAATACAATATACCCT--TATACCCATT---TT-TAATGGGTTCAGGGTATAAGAATACA-----------------------------ATA-ACTATTTTTTAAAGAACAAATATCAAAT----------------------------------AT-ATAT--------------------------------------------------ATAT---------------------------------------------TAT-----------------------------------------------------------------T--AACGA-----------------------------AC--------------------------TGCTTGTT-------------------------TCTAGGTGGGCCGCGC--CG-----GCTGGCT----CATCGGT-T------------------TCTCTG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...............................................................................TACATTTGGATTTT--GCACAAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	1.85	37	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................CAAGAATATATATACTTTATGGGGTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	1.30	26	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................TACATTTGGATTTT--GCACAAATACAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	1.15	23	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	23	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................TACATTTGGATTTT--GCACAAATACAATA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.40	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................TCAAGAATATATATACTTTATGGGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.35	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................TTTGGATTTT--GCACAAATACAATA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................CGCTGATCAAGAATATATATACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................CGCTGATCAAGAATATATATACTTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................AAGAATATATATACTTTATGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................TCGGAGATGCTTCCTTCTGCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................CAAGAATATATATACTTTATGGGGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................TG---TTACATACATTTGGATTTT--GC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................CAAGAATATATATACTTTAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................TTATGGGGTCGGAGATGCTTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................CTG---TTACATACATTTGGATTTT--G...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................TATACTTTATGGGGTCGGAGATGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................TTTATGGGGTCGGAGATGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................CCATT---TT-TAATGGGTTCAGGGTATA............................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................TT-TAATGGGTTCAGGGTATAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..................................TATACTTTATGGGGTCGGAGATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................CAATATACCCT--TATACCCATT---.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................CCCATT---TT-TAATGGGTTCAGGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................TACATTTGGATTTT--GCAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................TTTATGGGGTCGGAGATGCTTCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................TATACTTTATGGGGTCGGAGATGCTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................TACTTTATGGGGTCGGAGATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGCCGCGC--CG-----GCTGGC......................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................T--GCACAAATACAATATACCCT--TATAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................TT---TT-TAATGGGTTCAGGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................CTTCCTTCTGCCTG---TTACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................ATATACTTTATGGGGTCGGAGATGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................ATATACTTTATGGGGTCGGAGATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................AGAATATATATACTTTATGGGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................ACATACATTTGGATTTT--GCACAAATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................TTACATACATTTGGATTTT--GCACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................ATATACTTTATGGGGTCGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................T--GCACAAATACAATATACCCT--TATACCCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................ATGGGGTCGGAGATGCTTCCTTCTGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................TCAAGAATATATATACTTTATGGGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...........................................TGGGGTCGGAGATGCTTCCTTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................CATACATTTGGATTTT--GCACAAATACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................CGCTGATCAAGAATATATATAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................ACATTTGGATTTT--GCACAAATACAATAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................GAATATATATACTTTATGGGGTCGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................TACCCT--TATACCCATT---TT-TAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

ATCGACTCGACTGTTGATCCTGATCAGGAATATAAATACTTTATGGGGTCGAAGTTGTTTCCTTCTGTCTG---TTGCATACTTT-------T--GCACAAAACCATTATACCCACTT-TTAGCAAT---TTCAAATAGGTA-CTGGGATAAAAAGCGA------------------------------GC--------------------------------------------------------------A-------A-------------------------------------CCGAGAAGC-------------AA---T---TATCT---------------------TAAC---------------------------------------------T-ATTAA----TAATAT-------------------------AATTTATTTA--------CTT------------------------TCAGTTATCG-----CTGAAAAATA------------A---------------------------------------G-AATGGCTACGC-------CGTAAA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATA------------A---------------------------------------G-AATGGCTACG..............	20	1	1.00	1	0	1

droWil2

ATCGACTCGGTTGTTGATCCTGATCAAGAATATATATACTTTGTGGGGTCGGAGATGCTTCCTTCTGCCTG---TTACATACATT-------T--TGGCGACTTTAATATACCAT-----------TTCACC-CTATGGGTGTATGGTATAAAAACAAT-------CG-------------------------------------------------------------------------------------A-------ATGC----AACAA------CT---------------------------GAAGTT-------ACGCTGATAATA-----------------------------------------------------------GTA----------------TTAACATTAT-----GT--AAATT-----------------------------TTT------------------------TCAAATACC-------------------------CCGAG-------------------------------CG----C-AAT-------GG-------TCAAAC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
......................................................................................................................................................................................................................................................................TGC----AACAA------CT---------------------------GAAGTT-------ACGCTGATAA.......................................................................................................................................................................................................................................................................	26	2	0.50	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................ACAA------CT---------------------------GAAGTT-------ACGCTGATAATA-----------------------------------------------------------G.........................................................................................................................................................................................................	25	2	0.50	1	0	0	0	1	0
....................................................AGATGCTTCCTTCTGCCTG---T........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	2	0
......TCGGTTGTTGATCCTGATCAAGAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	0	0	2	0
.............................ATATATATACTTTGTGGGGTCGGAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0
.......................................TTTGTGGGGTCGGAGATGCTTCCTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
.............TTGATCCTGATCAAGAATATATAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
.TCGACTCGGTTGTTGATCCTGATCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0
..............................TATATATACTTTGTGGGGTCGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
........................................TTGTGGGGTCGGAGATGCTTCCTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0
............GTTGATCCTGATCAAGAATATAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0
.....CTCGGTTGTTGATCCTGATC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0
..........................................GTGGGGTCGGAGATGCTTCCTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0
.......................TCAAGAATATATATACTTTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
..................................TATACTTTGTGGGGTCGGAGATGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
............................................GGGGTCGGAGATGCTTCCTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0

dp5

ATCGACTCGGCTATTGATGCTGATCGAGAATAT--ATACTTTATGGGTTCGGAAACGATTCCTTCTGGACG---TTTCACACACATCCATTTTAACTACAAATCTAATATTCCCT-----------GTTAAG-CTATTG--AGCGTTTTTAACA-A--------------------------------------------------------------CTGTTGCAATT--TGAATT------------AATGA-------AAGTC--AAGAGG---------------------------------CTGTTTATAATTCACAATTTATT----TGTATATGTA----------------------------------------------------------------------------------------AACCA-AC--------------------TT---ATC------------------------GCGTATGTA------CATA----TGGGAATGAT-------------------TG----GGGCGAAC-----------G-AT--------------------TG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
................................................TCGGAAACGATTCCTTCTGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	5.50	110	0	110	0	0	0	0	0	0	0	0
................................................TCGGAAACGATTCCTTCTGGACG---T........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.75	15	15	0	0	0	0	0	0	0	0	0
................................................TCGGAAACGATTCCTTCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.70	14	0	14	0	0	0	0	0	0	0	0
.TCGACTCGGCTATTGATGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.55	11	0	11	0	0	0	0	0	0	0	0
................................................TCGGAAACGATTCCTTCTGGACG---TTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	5	0.40	2	0	2	0	0	0	0	0	0	0	0
.......................................................CGATTCCTTCTGGACG---TTTCACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	3	0.33	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................T------------AATGA-------AAGTC--AAGAGG---------------------------------C...............................................................................................................................................................................................................................................................................................	18	3	0.33	1	0	1	0	0	0	0	0	0	0	0
....................................TACTTTATGGGTTCGGAAACGAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	5	0.20	1	0	1	0	0	0	0	0	0	0	0
........................................TTATGGGTTCGGAAACGATTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	5	0.20	1	0	0	0	0	0	0	1	0	0	0
.................................................CGGAAACGATTCCTTCTGGACG---TTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.................TGCTGATCGAGAATAT--ATA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	10	0.20	2	0	2	0	0	0	0	0	0	0	0
..........CTATTGATGCTGATCGAGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	6	0.17	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------CATA----TGGGAATGAT-------------------TG----GGG..........................................	20	13	0.15	2	0	0	0	0	0	0	1	0	1	0
..................................................................................................................................................................................................................................................................................................................................................TATGTA----------------------------------------------------------------------------------------AACCA-AC--------------------TT---ATC------------------------GCGTATG................................................................................................	25	20	0.15	3	0	2	0	0	0	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT---ATC------------------------GCGTATGTA------CATA----TGGG............................................................................	22	20	0.15	3	0	0	0	0	0	0	0	3	0	0
...........................................TGGGTTCGGAAACGATTCCTTCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	7	0.14	1	0	1	0	0	0	0	0	0	0	0
..............................................GTTCGGAAACGATTCCTTCTGGAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	7	0.14	1	0	0	1	0	0	0	0	0	0	0
............ATTGATGCTGATCGAGAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	7	0.14	1	0	1	0	0	0	0	0	0	0	0
.........GCTATTGATGCTGATCGAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	8	0.13	1	0	1	0	0	0	0	0	0	0	0
...............................................TTCGGAAACGATTCCTTCTGGACG---T........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	8	0.13	1	0	1	0	0	0	0	0	0	0	0
...............................................TTCGGAAACGATTCCTTCTGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	9	0.11	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCA-AC--------------------TT---ATC------------------------GCGTATGTA------CA......................................................................................	23	20	0.10	2	0	1	0	0	0	0	0	1	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---ATC------------------------GCGTATGTA------CATA----TGGG............................................................................	21	20	0.10	2	0	1	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCA-AC--------------------TT---ATC------------------------GCGTATGTA------C.......................................................................................	22	20	0.10	2	0	1	1	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT---ATC------------------------GCGTATGTA------CATA----TGGGAATGA.......................................................................	27	11	0.09	1	0	0	0	0	0	0	0	1	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTA------CATA----TGGGAATGAT-------------------TG----GGG..........................................	25	12	0.08	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTA------CATA----TGGGAATGAT-------------------TG----GG...........................................	24	15	0.07	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................GTA----------------------------------------------------------------------------------------AACCA-AC--------------------TT---ATC------------------------GCGTAT.................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................TGTA----------------------------------------------------------------------------------------AACCA-AC--------------------TT---ATC------------------------GCGTA..................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................TATGTA----------------------------------------------------------------------------------------AACCA-AC--------------------TT---ATC------------------------GCGTATGTA------CA......................................................................................	29	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................AGAGG---------------------------------CTGTTTATAATTCACA................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................AGG---------------------------------CTGTTTATAATTCACAATT.............................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................ATGTA----------------------------------------------------------------------------------------AACCA-AC--------------------TT---ATC------------------------GCG....................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

ATCGACTCGGCTATTGATGCTGATCAAGAATATATATACTTTATGGGGTCGGAAACGATTCCTTCTGGACG---TTACACACATC--CACTTATACCACAAATCTAATATACCCC--AATACTCAT--------TTTGAGTATCGGGTATAAAAAAACACAACAGCCAATTAAAGC-----------------------------------------------------------------ATAAAAAA-----AGC-GAAATAT----GATGG-AAATGAA---------------------------AAAGTG-------ATACTATT----GTGAA-----------------ATCT------------------------------------------------------------------------------------------------GCAGCAATA-------------------------------GTG---TAGCAC----------------------CGACATTACCGA---------------C----AG----C-ATC----------------GGTGAA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droAna3

ATCGACTCAGGAGGTGATCCTGATCAAGAATATATATACTTTATAGGGTCGGAGATGTCTCCTTCACTGCG---TTGCACAGTTT-------T--GACCAAAATTATAATACCCT-----------CT-------GC-----AAGGGTATAAAAAACAA------------------------------AG-AATAATATTTGAACTTA------------------------------------------------------------ACCGG-CGATA-------------------AATAAAC-------------AAAA---------------------------------------------------------------------------------------AA---------------AT--ATCCC-----------------------------ATCTTTCCA------------------AGAGTTACCA-----CTTA----GGCGAATCAT-------------------CG-----GCCAGCT-----------G-AT--------------------CG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
ATCGACTCAGGAGGTGATCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.20	4	0	0	4	0	0	0
...................................................GAGATGTCTCCTTCACTGCG---TTGCACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	10	0.10	1	0	1	0	0	0	0
.........................................TATAGGGTCGGAGATGTCTCCTTCAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	1	0

droBip1

ATCAACTCAGGAGGTGATCCTGATCAAGAATATATATACTTTATAGGGTCGGAGATGTCTCCTTCACTGCG---TTGCACACTTT-------T--GACCAAAATTATAATACCCT-----------CT-------GC-----AAGGGTATAAAAACAAA--------AACGAAAAG------------------------------------------------------------------------------------------------------TT------------------------------------------------------------------------------------------------------------CTAAAATA----------------AAAACTATATGCAAGATTTTATTC-AGTTAAATCTTGCATAAAACTC------A----------------------------AAAA----------------------------ACCAGCGAAAAAGTGAAAAA-----GGGAGCT-----------G-AAGGGATACCC-------CTCGCA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AAAGACTCCCCTGTTGATGCTGATCAAGAATATATATACTTTATAGGGTCGGAAACGTCTCCTTCACTGCG---TTGCAAACTTC-------T--GACTGAAATTATAATACCCT-----------GCAAGG-GTATGTGGTACGTGGTTCCACACAAC------TCA--------------------ATT-GCGACT-----------------------------------------------------------------CTTTAAAAAGAAAAATGTTAAATTGAAACAAACCTT---------------C-------GCCTAGAT---AC------------------------------------------------------------------ATAT------------------------------------------AGTATATATACC------ATT------------------------TTAGTAA-------------------------TCGGC-CAGAATT--TTTAGAA-----GCAAGCT-----------G-TTTGCCATCAC-------TTTGCC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

-TCGATTCAGATCGTGATGCTGATCAAGAATATATATACTTTATGGGGTCTGAGGTGTCTCCTTCACTGCG---TTGCAAACTTC-------T--GACTGAAATTATAATACCCT-----------T-TGCT-TTGCA-----AGGGTATACAAATTAA--------------------------------------------------------------------------------------------TAA-------A-GCG--ATAAAG-AAATTTT---------------------------AAATTT-------AATTTAAT----TTTAA-----------------ATTT------------------------------------------------------------------------------------------------AAAGGCATA-------------------------------GTT---TAGTACTAA-------------TGGCTCTAGGAGC----------------------------------------------------TGTAGA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ATCGACTCGGCTGTTGATCCTGATCATGAATATATATACTTTATATGGTCGGAAACGCTTCCTTCTACCTG---TCACACACGTT-------T--CAACAAATACAATATACCCT-----------CTTACT-CTACGAGTAATGGGTATAAAAAGCTT-------TG------AGTCCTATGAAACGGAG-A-----------------ACTCACTACTGTGTCAATA-------------------------------------------------------------------------------------T------------------------------------------------------------------------------------------------------------------------------------TGCATATAAGCA------GTA------------------------ATACATG-------------------------TGGCCACGGGAGTTCCGA---------------T----AATGCGA-A------------------TTACTT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ATCGACTCGGCTAGTGACCCTGATCAAGAATATATATACTTTATAGGGTCGGAAACGCTTCCTTCTAGCTG---TTACATACTTT-------T--GCACGAATACAATATACCCT-----------TTTACT-CTACGAGTAACGGGTATAAACAGATCTAGTTAATCAAAAACAA--------------------TT---------------------------------------AAAAATGTCGAA-----CGCAAAT--------------------------------------------------AAAA---------------------------------------------TAT----------------------------------TAAC---------------------------------------------------------------------------------------------AAGTGCA-------------------------ACCGGTAAAGCCACG------------AAGCCAAGTCG----CG-ATCG--------------GCAACA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ATCGACTCGGCTAGTGATCCTGATCAAGAATATA------TTATGCGGTCGGAAATGCTTCCTTTTACATG---TTACATACTTT-------C--TGACGAATCTAGTATACCCT-----------TTTACT-CTACAAGTAACGGGTATAACAAACAA------------------------------GCATA---CATGTG----------------------------TACATT------------AAACA-------AAATT--AATA--------------------------------------------------------------------------------------------------------------------------TCC---CCTGCTCTATAA-------------------------------------------------------------AACAGTCAAATTACTCATGGCAAATA---------------------------ATCATGAAAGCTGTGCCACACTCAGGTCAGAT-----------G-ATTG------------------AC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ATCGACTCGGCTAGTGACCCTGATGAAGAATATATATACTTTATAGGGTCGGAAACGCTTCCTTCTCCCTG---TTACATACTTT-------T--GCACGAATTCAATATATAAT-----------TTTACT-CTACGAGTAACGGGTATAAACAGCAG--------------------------------------------------------------------------------------------TAA-------ATATTTGAAAAGGAAAATC-------------------CCAAAAAAC-------------GA---T---TATTT---------------------TCGG---------------------------------------------T-CATAA------------------------------------------------------------------------CATTT---CTGGTTATT-------------------------TCCATGGGAGCTGTAGGATGTAGTGGTCA--------------G-ATTCGTTTCATTCCAACTTATATA	Size	Hit Count	Total Norm	Total
No Reads

droEug1

ATCATCTTCGCTATTGATCCTGATCAAGAATATATATATTTTATAGAGTCGGAACCGCTTCCTTCTACCTG---TTACATACTTG-------T--CAACGAATCCAGTATACCCT-----------TTCACT-CTACGAGTAACGGGTATAAAAATATG--------------------------------------------------------------------------------------------TCA-------AAGCG--AGAAAA---------------------------------CAAATACGAATTGGCAACCAAAT----TACAGACAGAAACTAAACTAAA----GATAAACAATGGCTACGGGCAACGAATTTT------------------------------------------------------------------------------------------------------------------------------------------------------GGGACA-----GCAATTAAAGCTG----C-AAC-------GA-------CGAAAA	Size	Hit Count	Total Norm	Total
No Reads

dm3

ATCGATTCAGCTATTTATCCTGATCAAGAATATTTATACCTTATATGATCGGAATAGCTTCCTTCTACCTG---TTACATACATT----------CAACGAATATAGAATACCAT-----ACCCATTTTACT-CTATGATTAACGGGTATAATAATCAA------------------------------A----------------------------CTGTATCCATATTTATTTGAAAGATGTAGAA-----ATC-AAA--------------------------------------------------A--------------------------------------------------------------------------------TATATTAACTC-----------------------------ACCCA-------------------------------------------------------GCAAATAGT-------------------------GTAACAAGAGTTATACATTA-----TTTAGCT-----------A-CTTG-----------------ATT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
................................TTTATACCTTATATGATCGGAATAGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................TACCTTATATGATCGGAATAGCTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................GTAGAA-----ATC-AAA--------------------------------------------------A--------------------------------------------------------------------------------TATA.......................................................................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.................TCCTGATCAAGAATATTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	14	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................CTTCCTTCTACCTG---TTACAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................TTCCTTCTACCTG---TTACAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................TCCTTCTACCTG---TTACATAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................GCTTCCTTCTACCTG---TTACAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

ATC-----GGCATTTGAACCTGATCAAGAATATATATACTTTATATGATCTGAAACGCTTTCTTCTGCCTG---TTACATACTTT-------T--CAACCAATCTAGTATACGCT-----------TTTACT-GTACAAGTAACTGGTATAAAAATATACATTTAACAAAAAAAAC------------------------------------------------------------------------------------------------------TT------------------------------------------------------------------------------------------------------------TTAATATATTAATTTACTTTATAA---------------AT--ATACT-----------------------------ATG------------------------TAAGA-------------------------------------------------------------------------CAC----------------AGTCAC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.................................ATATACTTTATATGATCTGAAACGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	2	13.00	26	0	0	5	0	0	0	16	0	3	2	0	0	0	0	0	0	0
.................................ATATACTTTATATGATCTGAAACGCTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	2	3.50	7	0	0	3	0	0	0	1	0	3	0	0	0	0	0	0	0	0
...........................................................TTCTTCTGCCTG---TTACATACT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	1.75	35	0	0	1	0	0	0	7	9	10	5	0	0	3	0	0	0	0
.................................ATATACTTTATATGATCTGAAACGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	2	1.50	3	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0
.............................ATATATATACTTTATATGATCTGAAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	2	1.00	2	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0
.............................ATATATATACTTTATATGATCTGAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	2	1.00	2	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0
....................................TACTTTATATGATCTGAAACGCTTTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	2	1.00	2	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0
................................................TCTGAAACGCTTTCTTCTGCCTG---TTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	2	1.00	2	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0
................................................................................................................................TACT-GTACAAGTAACTGGTATAAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	2	1.00	2	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0
....................................TACTTTATATGATCTGAAACGCTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	2	1.00	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
............................................................................ACATACTTT-------T--CAACCAATCTAGTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	4	0.75	3	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0
...............................................................................................................................TTACT-GTACAAGTAACTGGTATAAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..............................TATATATACTTTATATGATCTGAAACGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...................................ATACTTTATATGATCTGAAACGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
................................................................................................................................TACT-GTACAAGTAACTGGTATAAAAATA......................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	2	0.50	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................TATACATTTAACAAAAAAAAC------------------------------------------------------------------------------------------------------TT------------------------------------------------------------------------------------------------------------TTAA...........................................................................................................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
................................................TCTGAAACGCTTTCTTCTGCCTG---TT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
....................................TACTTTATATGATCTGAAACGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..................................TATACTTTATATGATCTGAAACGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
........................................TTATATGATCTGAAACGCTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
............................................................TCTTCTGCCTG---TTACATACTTT-------T--CAACCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	30	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................GAATATATATACTTTATATGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	6	0.50	3	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................TTTACT-GTACAAGTAACTGGTATAAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.............................ATATATATACTTTATATGATCTGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................TTATAA---------------AT--ATACT-----------------------------ATG------------------------TAAGA-------------------------------------------------------------------------CAC----------------AGT...	27	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.............................ATATATATACTTTATATGATCTGAAACG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
....................................TACTTTATATGATCTGAAACGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
....................................TACTTTATATGATCTGAAACGCTTTCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................CGCT-----------TTTACT-GTACAAGTAACTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................TAGTATACGCT-----------TTTACT-GTACAAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................GAATATATATACTTTATATGATCTGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...........................................................................TACATACTTT-------T--CAACCAATCTAGTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	4	0.50	2	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0
..........................................................TTTCTTCTGCCTG---TTACATACT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	19	0.47	9	0	0	0	0	0	0	2	4	3	0	0	0	0	0	0	0	0
...........................................................TTCTTCTGCCTG---TTACATACTTT-------T--CAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	17	0.47	8	0	0	0	0	0	0	0	1	2	3	0	0	2	0	0	0	0
............................................................................ACATACTTT-------T--CAACCAATCTAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	5	0.40	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
....................................................................CTG---TTACATACTTT-------T--CAACCAATCTAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	3	0.33	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
....................................................................CTG---TTACATACTTT-------T--CAACCAATCTAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	3	0.33	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............TGAACCTGATCAAGAATATATATACTTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	3	0.33	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.............................................................CTTCTGCCTG---TTACATACTTT-------T--CAACCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	5	0.20	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................CAAGTAACTGGTATAAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	7	0.14	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.............................ATATATATACTTTATATGATCTGAACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	7	0.14	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...........................................................TTCTTCTGCCTG---TTACATACTTT-------T--CAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	15	0.13	2	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0
............................................................................ACATACTTT-------T--CAACCAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	8	0.13	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................TTCTTCTGCCTG---TTACATAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0
............................................................TCTTCTGCCTG---TTACATACTTT-------T--CAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	15	0.07	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...........................................................TTCTTCTGCCTG---TTACATACTTT-------T--CA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	17	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
............................................................TCTTCTGCCTG---TTACATACTTT-------T--CAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	17	0.06	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...........................................................TTCTTCTGCCTG---TTACATACTTT-------T--C...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	18	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..........................................................TTTCTTCTGCCTG---TTACATACTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	19	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.........................................................CTTTCTTCTGCCTG---TTACATACTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	19	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
............................................................TCTTCTGCCTG---TTACATACTTT-------T--....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
............................................................................ACATACTTT-------T--CAACCAATCTAGTGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
............................................................TCTTCTGCCTG---TTACATAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
............................................................TCTTCTGCCTG---TTACATACTTT-------T--CAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..........................................................TTTCTTCTGCCTG---TTACATAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
....................................................AAACGCTTTCTTCTGCCTG---TTACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................TTCTTCTGCCTG---TTACATACTTT-------T--CAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0

droSec2

ATCGACTCGGCTATTGACCATGATCAAGAATATATATGCAA--CATGGTAGGACACGATTCCTTCTGCCTGTTGTTACATACTTT-------T--CAACGAATCTAGTGTACTCT-----------TTTACT-CCACGAGTAACGGGTACTAAAATAGA-----------------------------A--------------------------------------------------------------TAA-------ATAT----AAAGG-AAATA-------------------ATGAAAA-------------TAGG---A---AATAT---------------------TCCG---------------------------------------------T-CAA-----------------ACTTAGCCC-ACTTTA-----------------------------------------------------ATCCT----------------------------------------------------------------------------------------GACACG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...................................................................................TT-------T--CAACGAATCTAGTGTACTCT-----------TT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	4	1.25	5	4	0	1	0
.............................................................................................................TACTCT-----------TTTACT-CCACGAGTAACGGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	2	0.50	1	1	0	0	0
..................................................................................TTT-------T--CAACGAATCTAGTGTACTCT-----------TT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	4	0.25	1	1	0	0	0
....................................................................................T-------T--CAACGAATCTAGTGTACTCT-----------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	4	0.25	1	1	0	0	0
..............................................................................ATACTTT-------T--CAACGAATCTAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0

droYak3

ATCTACTCGGCTATTGATCCTGATCAAGATTATATATACTTTATATTGTCGGAAAAGCTTCCTTCTGCCTG---TTACATACTTT-------T--CAACGAATCTAGTATACCCT-----------TTCACT-CTACGAGTAACGGGTATAATAAAACA-----------------------------GAA-AACCTCACGCGAAGTCAACAAATTAGAT----------------------------------ATC-TAA--------------------------------------------------ATAG-------AACACGCT----GCGGA-----------------AACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAGAGACATCTAAGA-----ACTATCT-----------G-TTTG-------------------G	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
....................................................................................................................................................................................................TCACGCGAAGTCAACAAATTAGAT----------------------------------A....................................................................................................................................................................................................................................................................................................................................................	25	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
......TCGGCTATTGATCCTGATCAAGAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	15	0.27	4	0	0	0	0	0	0	0	0	0	0	4
.....CTCGGCTATTGATCCTGATCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	1	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................ACT-CTACGAGTAACGGGTATA............................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	2	0	0	0	0
..CTACTCGGCTATTGATCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	16	0.06	1	0	0	1	0	0	0	0	0	0	0	0
...................................................................................TT-------T--CAACGAATCTAGTATACCCT-----------TTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0

droEre2

TTCGACTCGGTTATTGATCCTGATCAAGAATATATATACTTTATATGGTCGGAAATGCTTCCTTCTGCCTG---TTACATACTTT-------T--AAACGAATCTAGTATACCCT-----------TTTACT-CTACGAGTAACGGGTATAAAAAGAGT------------------------------------------------------------------------------------------------------------------------ACTAATCAAAAATTAGGTTC---------------T-------GGGTAAAT---AT------------------------------------------------------------------TTAGTCCATAA---------------ATTCAACCC------------------------------------------------------------------------------------------------------------------------------------------------------------ATT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dmo_1986

scaffold_6540:17836684-17836834 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-23.8	-23.7	-23.5