ID:

dmo_1964

 Coordinate:

scaffold_6540:15826613-15826696 +

 Confidence:

confident

 Class:

Mirtron

 Genomic Locale:

intron

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-18.3 -18.3 -17.6

Flybase annnotation

intron [Dmoj\GI24695-in]; CDS [Dmoj\GI24695-cds]; CDS [Dmoj\GI24695-cds]

No Repeatable elements found

Sense Strand Reads

GCAACACAACAACAATGTATCCCGCACCGGTGCGTCACCCCGCCGCCGGGGTAAGTATTAAAGATTGCAATGGGACCCAATCAAGTGTTATACTAATTGTGTTTCGCCCCCATGTCCATCTTCAATACGAACAGGGACCACCACCTCAGGGCCCAATCAAATTTACCATTGCCGATACATTGGA

**************************************************((..(((((.(((((....(((((..........(((..((((.....))))..))).)))))....))))).)))))..))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M060

embryo

 V041

embryo

 M046

female body

 V056

head

 V049

head

 V110

male body
................................................................................................................TGTCCATCTTCAATACGAACAGT................................................. 23 1 1 1632.00 1632 1285 115 60 88 45 39
................................................................................................................TTTCCATCTTCAATACGAACAGT................................................. 23 2 1 307.00 307 307 0 0 0 0 0
................................................................................................................TGTCCATCTTCAATACGAACAGC................................................. 23 1 1 256.00 256 255 0 0 1 0 0
................................................................................................................TGTCCATCTTCAATACGAACAG.................................................. 22 0 1 100.00 100 49 13 30 6 2 0
................................................................................................................TGCCCATCTTCAATACGAACAGT................................................. 23 2 1 89.00 89 89 0 0 0 0 0
...............................................................................................................ATGTCCATCTTCAATACGAACAG.................................................. 23 0 1 84.00 84 67 3 11 2 1 0
...............................................................................................................ATGTCCATCTTCAATACGAACAGT................................................. 24 1 1 78.00 78 73 2 2 1 0 0
...............................................................................................................ATGTCCATCTTCAATACGAACA................................................... 22 0 1 65.00 65 43 9 8 2 3 0
................................................................................................................TTTCCATCTTCAATACGAACAGC................................................. 23 2 1 62.00 62 62 0 0 0 0 0
................................................................................................................TGTTCATCTTCAATACGAACAGT................................................. 23 2 1 44.00 44 44 0 0 0 0 0
................................................................................................................TGTCCATCTTCAATACGAACAGTT................................................ 24 2 1 43.00 43 38 2 0 3 0 0
...............................................................................................................ATGTCCATCTTCAATACGAAC.................................................... 21 0 1 33.00 33 15 2 11 3 1 1
................................................................................................................TGTCCATCTTCAATACGAACAGA................................................. 23 1 1 25.00 25 16 6 2 0 1 0
................................................................................................................TGTCCATCTTCAATACGAACA................................................... 21 0 1 25.00 25 5 0 12 5 3 0
................................................................................................................TGCCCATCTTCAATACGAACAGC................................................. 23 2 1 21.00 21 21 0 0 0 0 0
...............................................................................................................CTGTCCATCTTCAATACGAACAGT................................................. 24 2 1 20.00 20 19 0 1 0 0 0
................................................................................................................TTCCCATCTTCAATACGAACAGT................................................. 23 3 1 20.00 20 20 0 0 0 0 0
................................................................................................................TGTCCATCTTCAATACGAAC.................................................... 20 0 1 17.00 17 0 0 7 6 3 1
.................................................................................................................GTCCATCTTCAATACGAACAGT................................................. 22 1 1 14.00 14 10 0 4 0 0 0
..................................................GTAAGTATTAAAGATTGCAATGG............................................................................................................... 23 0 1 13.00 13 3 7 2 0 0 1
................................................................................................................TTTCCATCTTCAATACGAACAGTT................................................ 24 3 1 12.00 12 12 0 0 0 0 0
...............................................................................................................ATGTCCATCTTCAATACGAACAGC................................................. 24 1 1 10.00 10 10 0 0 0 0 0
................................................................................................................TTTCCATCTTCAATACGAACAG.................................................. 22 1 1 10.00 10 10 0 0 0 0 0
................................................................................................................TGTTCATCTTCAATACGAACAGC................................................. 23 2 1 10.00 10 10 0 0 0 0 0
...................................................TAAGTATTAAAGATTGCAATGG............................................................................................................... 22 0 1 9.00 9 2 5 1 0 0 1
...............................................................................................................CTGTCCATCTTCAATACGAACAGC................................................. 24 2 1 8.00 8 8 0 0 0 0 0
..................................................GTAAGTATTAAAGATTGCAATG................................................................................................................ 22 0 1 8.00 8 5 3 0 0 0 0
...............................................................................................................AGGTCCATCTTCAATACGAACAG.................................................. 23 1 1 8.00 8 8 0 0 0 0 0
....................................................................................................................CATCTTCAATACGAACAGT................................................. 19 1 1 8.00 8 8 0 0 0 0 0
...............................................................................................................AGGTCCATCTTCAATACGAACAGT................................................. 24 2 1 7.00 7 7 0 0 0 0 0
...............................................................................................................ATGTCCATCTTCAATACGA...................................................... 19 0 1 7.00 7 0 0 5 2 0 0
................................................................................................................TGTCCATCTTCAATCCGAACAGT................................................. 23 2 1 7.00 7 7 0 0 0 0 0
..............................................................................................................CATGTCCATCTTCAATACGAAC.................................................... 22 0 1 7.00 7 7 0 0 0 0 0
................................................................................................................TATCCATCTTCAATACGAACAGT................................................. 23 2 1 7.00 7 6 0 0 1 0 0
................................................................................................................TTTTCATCTTCAATACGAACAGT................................................. 23 3 2 6.50 13 13 0 0 0 0 0
................................................................................................................CGTCCATCTTCAATACGAACAGT................................................. 23 2 1 6.00 6 6 0 0 0 0 0
................................................................................................................TCTCCATCTTCAATACGAACAGT................................................. 23 2 1 6.00 6 6 0 0 0 0 0
................................................................................................................TGGCCATCTTCAATACGAACAGT................................................. 23 2 1 6.00 6 1 0 0 5 0 0
................................................................................................................TGTCCATCTTCACTACGAACAGT................................................. 23 2 1 6.00 6 5 0 0 0 1 0
................................................................................................................TGTCTATCTTCAATACGAACAGT................................................. 23 2 1 6.00 6 6 0 0 0 0 0
...............................................................................................................AGGTCCATCTTCAATACGAACA................................................... 22 1 1 5.00 5 5 0 0 0 0 0
...............................................................................................................AGGTCCATCTTCAATACGAAC.................................................... 21 1 1 5.00 5 5 0 0 0 0 0
..................................................GTAAGTATTAAAGATTGCAATGGGA............................................................................................................. 25 0 1 5.00 5 0 1 0 0 0 4
.................................................................................................................GTCCATCTTCAATACGAACAG.................................................. 21 0 1 5.00 5 0 0 5 0 0 0
................................................................................................................TGCCCATCTTCAATACGAACAG.................................................. 22 1 1 5.00 5 5 0 0 0 0 0
................................................................................................................TGTCCATCTTCAATACGCACAGT................................................. 23 2 1 5.00 5 0 2 0 0 3 0
.....................................................................................................................ATCTTCAATACGAACAGT................................................. 18 1 1 5.00 5 5 0 0 0 0 0
................................................................................................................TTTCCATCTTCAATACGAACAGA................................................. 23 2 1 4.00 4 4 0 0 0 0 0
...............................................................................................................ATGTCCATCTTCAATACGAA..................................................... 20 0 1 4.00 4 0 0 1 2 1 0
...............................................................................................................ATGTCCATCTTCAATACGAACAA.................................................. 23 1 1 4.00 4 4 0 0 0 0 0
..................................................GGAAGTATTAAAGATTGCAATG................................................................................................................ 22 1 1 4.00 4 4 0 0 0 0 0
................................................................................................................TGTCCATCTTAAATACGAACAGT................................................. 23 2 1 4.00 4 4 0 0 0 0 0
...................................................................................................................CCATCTTCAATACGAACAGT................................................. 20 1 1 4.00 4 3 0 1 0 0 0
..................................................GTAAGTATTAAAGATTGCAAT................................................................................................................. 21 0 1 4.00 4 0 2 1 1 0 0
................................................................................................................TGTCCATCTTCAATACAAACAGT................................................. 23 2 1 4.00 4 3 0 0 0 0 1
................................................................................................................TTTCCATCTTCAATACGAACA................................................... 21 1 1 4.00 4 4 0 0 0 0 0
...............................................................................................................AGGTCCATCTTCAATACGAACAGC................................................. 24 2 1 4.00 4 4 0 0 0 0 0
.................................................................................................................GGCCATCTTCAATACGAACAGT................................................. 22 2 1 4.00 4 4 0 0 0 0 0
...............................................................................................................ATGTCCATCTTCAATACGAACAGA................................................. 24 1 1 3.00 3 3 0 0 0 0 0
....................................................................................................................CATCTTCAATACGAACAGC................................................. 19 1 1 3.00 3 3 0 0 0 0 0
................................................................................................................TTCCCATCTTCAATACGAACAGC................................................. 23 3 2 3.00 6 6 0 0 0 0 0
................................................................................................................TGTCCATCTTCAATACGAACAGG................................................. 23 0 1 3.00 3 2 0 0 1 0 0
................................................................................................................TGTCCATCTTCAATACGAACAGTC................................................ 24 2 1 3.00 3 1 0 2 0 0 0
..................................................GTAAGTATTAAAGATTGCAATGGG.............................................................................................................. 24 0 1 3.00 3 1 1 1 0 0 0
................................................................................................................TGTCCATCTTAAATACGAACAGC................................................. 23 2 1 3.00 3 3 0 0 0 0 0
................................................................................................................TGTCCATATTCAATACGAACAGT................................................. 23 2 1 3.00 3 3 0 0 0 0 0
................................................................................................................TGTCCATCTTCAATACGACCAGT................................................. 23 2 1 3.00 3 0 1 0 0 2 0
................................................................................................................TGCCCATCTTCAATACGAACAGTT................................................ 24 3 1 3.00 3 3 0 0 0 0 0
................................................................................................................TGTCCACCTTCAATACGAACAGT................................................. 23 2 1 2.00 2 0 0 0 1 1 0
................................................................................................................TTTCCATCTTCAATACGAAC.................................................... 20 1 1 2.00 2 2 0 0 0 0 0
................................................................................................................TGTCCATCTTCCATACGAACAGT................................................. 23 2 1 2.00 2 0 1 0 0 1 0
...............................................................................................................CGGTCCATCTTCAATACGAACAGT................................................. 24 3 1 2.00 2 2 0 0 0 0 0
................................................................................................................TGTCAATCTTCAATACGAACAGT................................................. 23 2 1 2.00 2 1 1 0 0 0 0
................................................................................................................TTTCTATCTTCAATACGAACAGT................................................. 23 3 1 2.00 2 2 0 0 0 0 0
................................................................................................................TGTCCATCTTCAATACGGACAGT................................................. 23 2 1 2.00 2 1 1 0 0 0 0
................................................................................................................TTTCCATCTTCACTACGAACAGT................................................. 23 3 1 2.00 2 1 1 0 0 0 0
...............................................................................................................CTGTCCATCTTCAATACGAACAG.................................................. 23 1 1 2.00 2 1 0 1 0 0 0
................................................................................................................TTTCCATCTTCAATACTAACAGT................................................. 23 3 1 2.00 2 2 0 0 0 0 0
................................................................................................................TGTCCATCTTCAATACGAGCAG.................................................. 22 1 1 2.00 2 2 0 0 0 0 0
................................................................................................................TGTCCATCTTCAATACGAA..................................................... 19 0 1 2.00 2 0 0 0 0 2 0
.................................................................................................................GTACATCTTCAATACGAACAGT................................................. 22 2 1 2.00 2 2 0 0 0 0 0
................................................................................................................GTTCCATCTTCAATACGAACAGT................................................. 23 3 1 2.00 2 2 0 0 0 0 0
................................................................................................................TGTCCATCTTCAGTACGAACAGT................................................. 23 2 1 2.00 2 1 0 0 0 1 0
................................................................................................................TGTCCATCTTCAATACGAACGGT................................................. 23 2 1 2.00 2 1 1 0 0 0 0
...............................................................................................................ATCTCCATCTTCAATACGAACAG.................................................. 23 1 1 2.00 2 2 0 0 0 0 0
................................................................................................................TGTCCAGCTTCAATACGAACAGT................................................. 23 2 1 2.00 2 1 0 0 1 0 0
..................................................................................................................TCCATCTTCAATACGAACAGT................................................. 21 1 1 2.00 2 2 0 0 0 0 0
..................................................GGAAGTATTAAAGATTGCAATGT............................................................................................................... 23 2 1 2.00 2 2 0 0 0 0 0
................................................................................................................TGTCCATCTTCAATACAAACAGC................................................. 23 2 1 2.00 2 2 0 0 0 0 0
..................................................GGATGTATTAAAGATTGCAATG................................................................................................................ 22 2 1 2.00 2 2 0 0 0 0 0
.................................................................................................................GTCCATCTTCAATACGAAC.................................................... 19 0 1 2.00 2 0 0 2 0 0 0
.................................................................................................................GTCCATCTTCAATACGAACAGC................................................. 22 1 1 2.00 2 2 0 0 0 0 0
................................................................................................................TTTCCATCTTAAATACGAACAGC................................................. 23 3 1 2.00 2 2 0 0 0 0 0
................................................................................................................TGTCCATCCTCAATACGAACAGT................................................. 23 2 1 2.00 2 1 0 1 0 0 0
...............................................................................................................ATGTCCATCTTCAATACGAACAGTT................................................ 25 2 1 2.00 2 1 1 0 0 0 0
...............................................................................................................AGGTCCATCTTCAATACGAACAGTT................................................ 25 3 1 2.00 2 2 0 0 0 0 0
................................................................................................................TCTCCATCTTCAATACGAACAGC................................................. 23 2 1 2.00 2 2 0 0 0 0 0
................................................................................................................TTTCCATATTCAATACGAACAGT................................................. 23 3 2 1.50 3 3 0 0 0 0 0
................................................................................................................TGGCAATCTTCAATACGAACAGT................................................. 23 3 1 1.00 1 0 1 0 0 0 0
................................................................................................................TGTTTATCTTCAATACGAACAGT................................................. 23 3 1 1.00 1 1 0 0 0 0 0
................................................................................................................TGTACATCTTCAATACGAACAG.................................................. 22 1 1 1.00 1 0 0 0 0 1 0
..................................................GTAATTATTAAAGATTGCAATGG............................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
...............................................................................................................AGCTCCATCTTCAATACGAACAGT................................................. 24 3 1 1.00 1 1 0 0 0 0 0
................................................................................................................TTTCCATCTTCGATACGAACAGT................................................. 23 3 1 1.00 1 1 0 0 0 0 0
................................................................................................................TGTCCATCTTCAATACGAACGG.................................................. 22 1 1 1.00 1 0 1 0 0 0 0
...............................................................................................................ATTTCCATCTTCAATACGAACA................................................... 22 1 1 1.00 1 0 0 0 1 0 0
...............................................................................................................AGCTCCATCTTCAATACGAACAGC................................................. 24 3 1 1.00 1 1 0 0 0 0 0
................................................................................................................TGTCCATCTTCAATACGAACAGTTT............................................... 25 3 1 1.00 1 0 0 1 0 0 0
................................................................................................................TGTCCATCTTCAATACGAACCGT................................................. 23 2 1 1.00 1 0 0 0 0 1 0
................................................................................................................TGTCCATCTTCAATACGAATAGT................................................. 23 2 1 1.00 1 1 0 0 0 0 0
................................................................................................................TGTCCATCTTCCATACGAACCGT................................................. 23 3 1 1.00 1 0 1 0 0 0 0
..............................................................................................................CATGTCCATCTTCAATACGAACAGT................................................. 25 1 1 1.00 1 1 0 0 0 0 0
................................................................................................................TGCCCATATTCAATACGAACAGA................................................. 23 3 1 1.00 1 0 0 0 1 0 0
................................................................................................................TGACCATCTTCAATACGAAC.................................................... 20 1 1 1.00 1 0 0 1 0 0 0
...............................................................................................................TTGTCCATCTTCAATACGAACAG.................................................. 23 1 1 1.00 1 1 0 0 0 0 0
................................................................................................................TGACCATCTTCAATACGAACAGT................................................. 23 2 1 1.00 1 1 0 0 0 0 0
................................................................................................................TTTCCATCTTAAATACGAACAGT................................................. 23 3 1 1.00 1 1 0 0 0 0 0
................................................................................................................TGTCCATCTTCAAAACGAACAGT................................................. 23 2 1 1.00 1 1 0 0 0 0 0
...............................................................................................................ATGGCCATCTTCAATACGAACAG.................................................. 23 1 1 1.00 1 0 1 0 0 0 0
...............................................................................................................ATGTCCATCTTCAATACGAACT................................................... 22 1 1 1.00 1 1 0 0 0 0 0
................................................................................................................TGTCCATCTTCAATACTAACAGT................................................. 23 2 1 1.00 1 1 0 0 0 0 0
..............................................................................................................TGTGTCCATCTTCAATACGAACAGT................................................. 25 3 1 1.00 1 1 0 0 0 0 0
.............................................................................................................CCATGTCCATCTTCAATACGAAC.................................................... 23 0 1 1.00 1 0 0 1 0 0 0
...............................................................................................................ATGTCCATCTTCCATACGAACAGT................................................. 24 2 1 1.00 1 1 0 0 0 0 0
................................................................................................................TGTCCATCTTCACTTCGAACAGT................................................. 23 3 1 1.00 1 0 0 0 1 0 0
................................................................................................................TGCCCATCTTCAATACGAACA................................................... 21 1 1 1.00 1 1 0 0 0 0 0
................................................................................................................TGTCCTTCTTCAATACGAACAGT................................................. 23 2 1 1.00 1 1 0 0 0 0 0
...............................................................................................................AGGTCCATCTTCAATACGAACAA.................................................. 23 2 1 1.00 1 1 0 0 0 0 0
................................................................................................................TATCCATCTTCAATACGAACAGTC................................................ 24 3 1 1.00 1 1 0 0 0 0 0
................................................................................................................GGTCCATCTTCAATACGAACAGC................................................. 23 2 1 1.00 1 1 0 0 0 0 0
...............................................................................................................ATGTCCATCATCAATACGAACA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................................ATGTCCATCTTCAATACGAAA.................................................... 21 1 1 1.00 1 0 1 0 0 0 0
................................................................................................................TGTCCATCTTCAATGCGAACAG.................................................. 22 1 1 1.00 1 0 0 0 1 0 0
................................................................................................................TGCCCATCTTCAATAGGAACAGT................................................. 23 3 1 1.00 1 1 0 0 0 0 0
................................................................................................................TGTCCATCTTCAATACGAACATT................................................. 23 2 1 1.00 1 0 0 0 0 1 0
..................................................GTAACTATTAAAGATTGCAATGG............................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
.................................................................................................................GGCCATCTTCAATACGAACAGTT................................................ 23 3 1 1.00 1 1 0 0 0 0 0
................................................................................................................TGGCCATCTTCAATACGAACAGTT................................................ 24 3 1 1.00 1 0 0 0 1 0 0
...............................................................................................................AGGTCCATCTTCCATACGAACA................................................... 22 2 1 1.00 1 1 0 0 0 0 0
.................................................................................................................GTCCATCTTCAATACGAACAGA................................................. 22 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................ATCTTCAATACGAACAGC................................................. 18 1 2 1.00 2 2 0 0 0 0 0
..................................................GAAAGAATTAAAGATTGCAATTGG.............................................................................................................. 24 3 1 1.00 1 0 1 0 0 0 0
..............................................................................................................TCTGTCCATCTTCAATACGAACAGT................................................. 25 3 1 1.00 1 1 0 0 0 0 0
...............................................................................................................ATCTCCATCTTCAATACGAACAGC................................................. 24 2 1 1.00 1 1 0 0 0 0 0
................................................................................................................TTTCCATCTTCACTACGAACAGC................................................. 23 3 1 1.00 1 1 0 0 0 0 0
...............................................................................................................ATGTTCATCTTCAATACGAACA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
................................................................................................................TGTCCATCTTCAATATGAACAGT................................................. 23 2 1 1.00 1 0 1 0 0 0 0
................................................................................................................TGTCCATCTTCAATGCGAACAGT................................................. 23 2 1 1.00 1 1 0 0 0 0 0
..................................................TGAAGTATTAAAGATTGCAATG................................................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0
...............................................................................................................ATGTCCATATTCAATACGAACAGT................................................. 24 2 1 1.00 1 1 0 0 0 0 0
................................................................................................................CCTCCATCTTCAATACGAACAGC................................................. 23 3 1 1.00 1 1 0 0 0 0 0
...............................................................................................................ATGTCCATCTTCGATACGAACA................................................... 22 1 1 1.00 1 0 0 1 0 0 0
................................................................................................................TTTCCATGTTCAATACGAACAGC................................................. 23 3 1 1.00 1 1 0 0 0 0 0
..............................................................................................................CATGTCCATCTTCAATGCGAA..................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................................ATGACCATCTTCAATACGAACAGT................................................. 24 2 1 1.00 1 1 0 0 0 0 0
................................................................................................................TGTTCATCTTCAATACGAACAGTT................................................ 24 3 1 1.00 1 1 0 0 0 0 0
..................................................GGAAGTATTAAAGATTGCAATGGG.............................................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0
................................................................................................................TGTCCATCTTCATTACGAACAGT................................................. 23 2 1 1.00 1 0 0 0 0 1 0
................................................................................................................TGTCTATCTTCAATACGAACAGC................................................. 23 2 1 1.00 1 1 0 0 0 0 0
...............................................................................................................ATGTCAATCTTCAATACGAACAG.................................................. 23 1 1 1.00 1 0 0 0 1 0 0
................................................................................................................GGTCCATCTTCAATACGAACAGT................................................. 23 2 1 1.00 1 0 0 0 0 0 1
..............................................................................................................CATGTCCATCTTCAATACGAACAGC................................................. 25 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................................ATGCCCATCTTCAATACGAACAGT................................................. 24 2 1 1.00 1 1 0 0 0 0 0
...............................................................................................................ATGGCCATCTTCAATACGAACAGT................................................. 24 2 1 1.00 1 1 0 0 0 0 0
................................................................................................................TGACCATCTTCAATACGAACAGC................................................. 23 2 1 1.00 1 0 0 0 1 0 0
..................................................................................................................TCCATCTTCAATACGAACAG.................................................. 20 0 1 1.00 1 0 0 1 0 0 0
................................................................................................................TGTCCATCTTCAATACGAACAAC................................................. 23 2 1 1.00 1 1 0 0 0 0 0
.................................................................................................................CTCCATCTTCAATACGAACAGT................................................. 22 2 1 1.00 1 1 0 0 0 0 0
............................................................AAGATTGCAATGGGACCCA......................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................TGCCCATCTTAAATACGAACAGT................................................. 23 3 1 1.00 1 1 0 0 0 0 0
..................................................GTAAGTATTAAAGATTGCAA.................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................AGGACCATCTTCAATACGAAC.................................................... 21 2 1 1.00 1 1 0 0 0 0 0
................................................................................................................TGTCCATCTTCAGTACGAACAG.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
................................................................................................................TGCCCATCTTCAATATGAACAGT................................................. 23 3 1 1.00 1 1 0 0 0 0 0
..............................................................................................................CATGTCCATCTTCAATACGAACA................................................... 23 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................TGCCCATCTTCACTACGAACAGT................................................. 23 3 1 1.00 1 1 0 0 0 0 0
...................................................................................................................CGATCTTCAATACGAACAGT................................................. 20 2 1 1.00 1 1 0 0 0 0 0
...............................................................................................................AGCTCCATCTTCAATACGAACAG.................................................. 23 2 1 1.00 1 1 0 0 0 0 0
...............................................................................................................ATGTCCATCTTCCATACGAACAG.................................................. 23 1 1 1.00 1 1 0 0 0 0 0
..............................................................................................................CATGTCCATCTTCAATACGA...................................................... 20 0 1 1.00 1 0 0 1 0 0 0
................................................................................................................TGCCTATCTTCAATACGAACAGC................................................. 23 3 1 1.00 1 1 0 0 0 0 0
..................................................GTAAGTATTAAAGATTGCAGTGGG.............................................................................................................. 24 1 1 1.00 1 0 1 0 0 0 0
..................................................GTAAGTGTTAAAGATTGCAATGGG.............................................................................................................. 24 1 1 1.00 1 0 1 0 0 0 0
..................................................GGAAGTATTAAAGATTGCAATGG............................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
................................................................................................................TGTCCATCTTCAATACGTACAGT................................................. 23 2 1 1.00 1 0 1 0 0 0 0
................................................................................................................TGTCCATCTTCAATACGAACACT................................................. 23 2 1 1.00 1 0 1 0 0 0 0
................................................................................................................TGTCCATCTTAAATACGAACAG.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
................................................................................................................TGTCCATCTTCACTACGAACAGTT................................................ 24 3 1 1.00 1 1 0 0 0 0 0
................................................................................................................TGTCCATCTTCAATACGACCCGT................................................. 23 3 1 1.00 1 0 1 0 0 0 0
................................................................................................................TGTCCATCTTCAATACGAGCAGC................................................. 23 2 1 1.00 1 1 0 0 0 0 0
.............................................................................................................AAATGTCCATCTTCAATACGAACA................................................... 24 2 1 1.00 1 0 0 1 0 0 0
...............................................................................................................ATGGCCATCTTCAATACGAACAGC................................................. 24 2 1 1.00 1 1 0 0 0 0 0
..............................................................................................................CATGTCCATCTTCAATACGAAAA................................................... 23 1 1 1.00 1 1 0 0 0 0 0
................................................................................................................CGCCCATCTTCAATACGAACAGT................................................. 23 3 1 1.00 1 1 0 0 0 0 0
..................................................TTAAGTATTAAAGATTGCAATG................................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
..............................................................................................................CATGTCCATCTTCAATACGAACAG.................................................. 24 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................TGGCCATCTTAAATACGAACAGT................................................. 23 3 1 1.00 1 0 1 0 0 0 0
................................................................................................................TGTCCATCTTCAATACCAACAGT................................................. 23 2 1 1.00 1 0 1 0 0 0 0
...............................................................................................................ATCTCCATCTTCAATACGAACTT.................................................. 23 3 1 1.00 1 1 0 0 0 0 0
..................................................................................................................TCCATCTTCAATACGAACAC.................................................. 20 1 1 1.00 1 1 0 0 0 0 0
..............................................................GTTAGCAATGGGACCCAATC...................................................................................................... 20 2 1 1.00 1 1 0 0 0 0 0
................................................................................................................TTCCCATCTTCAATACGAACA................................................... 21 2 1 1.00 1 1 0 0 0 0 0
................................................................................................................TTTCCATCTTCAATACGAACAGTA................................................ 24 3 1 1.00 1 1 0 0 0 0 0
................................................................................................................TGGCCAGCTTCAATACGAACAGT................................................. 23 3 1 1.00 1 0 0 0 1 0 0
................................................................................................................TGACCATCTTCAATACGAA..................................................... 19 1 1 1.00 1 0 0 0 1 0 0
................................................................................................................ATTCCATCTTCAATACGAACAGT................................................. 23 3 1 1.00 1 1 0 0 0 0 0
................................................................................................................TGCCCATCTTCAATACGAACAGA................................................. 23 2 1 1.00 1 1 0 0 0 0 0
................................................................................................................GTTCCATCTTCAATACGAACAGC................................................. 23 3 1 1.00 1 1 0 0 0 0 0
................................................................................................................TTTTCATCTTCAATACGAACAGC................................................. 23 3 1 1.00 1 1 0 0 0 0 0
...............................................................................................................ATGGCCATCTTCAATACGAACA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................................ATGTCCATCTTCAATACTAACAT.................................................. 23 2 1 1.00 1 1 0 0 0 0 0
................................................................................................................TGTCAATGTTCAATACGAACAGT................................................. 23 3 1 1.00 1 0 0 0 0 1 0
.................................................................................................................GTCCATCTTCAATACGAACAGTAAA.............................................. 25 3 1 1.00 1 0 0 1 0 0 0
...................................................................................................................CCATCTTCAATACGAACAG.................................................. 19 0 1 1.00 1 0 0 1 0 0 0
...................................................TAAGTATTAAAGATTGCAATGGG.............................................................................................................. 23 0 1 1.00 1 0 1 0 0 0 0
.................................................................................................................GTCCATCTTCAATACGAACA................................................... 20 0 1 1.00 1 0 0 1 0 0 0
................................................................................................................TGTCCCTCTTCAATACGAACAGT................................................. 23 2 1 1.00 1 0 0 0 0 1 0
................................................................................................................TTTCCATCTTCAATACGAATAGT................................................. 23 3 1 1.00 1 1 0 0 0 0 0
...............................................................................................................CTCTCCATCTTCAATACGAACAGT................................................. 24 3 1 1.00 1 1 0 0 0 0 0
................................................................................................................TTTCCATCCTCAATACGAACAGT................................................. 23 3 1 1.00 1 1 0 0 0 0 0
....................................................................................................................CATCTTCAATACGAACAGTA................................................ 20 2 1 1.00 1 1 0 0 0 0 0
...............................................................................................................TTGTCCATCTTCAATACGAAC.................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................................ATGACCATCTTCAATACGAACA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................................ATCTCCATCTTCAATACGAACAGT................................................. 24 2 1 1.00 1 1 0 0 0 0 0
...............................................................................................................CGGTCCATCTTCAATACGAACAGC................................................. 24 3 1 1.00 1 1 0 0 0 0 0
................................................................................................................TGTCCATCTTCCCTACGAACAGT................................................. 23 3 1 1.00 1 0 1 0 0 0 0
................................................................................................................TGTCCATCTTCAATACGAACAGTAAA.............................................. 26 3 1 1.00 1 0 0 1 0 0 0
................................................................................................................TGTCCATCTTTAATACGAACAGT................................................. 23 2 1 1.00 1 1 0 0 0 0 0
...............................................................................................................ATGTCCATCTTCAATACGT...................................................... 19 1 1 1.00 1 0 0 0 0 1 0
..................................................................................................................TCCATCTTCAATACGAACAGC................................................. 21 1 1 1.00 1 1 0 0 0 0 0
................................................................................................................TGCCCATATTCAATACGAACAGT................................................. 23 3 2 0.50 1 1 0 0 0 0 0
................................................................................................................TGTCCATCTGCAATACGAACTGT................................................. 23 3 2 0.50 1 0 0 0 1 0 0
...................................................TAAGCATTAAAGATTGCAATATG.............................................................................................................. 23 3 2 0.50 1 0 1 0 0 0 0
................................................................................................................TGTTCATCTTCAATACGAAGAGA................................................. 23 3 2 0.50 1 1 0 0 0 0 0
................................................................................................................TGGCCATCTTCAATACGACCAGC................................................. 23 3 2 0.50 1 0 0 0 1 0 0
................................................................................................................TTTCCATCTTCAATACGAACGGC................................................. 23 3 2 0.50 1 1 0 0 0 0 0
................................................................................................................TGTCAATCTTCAATTCGAACAGT................................................. 23 3 2 0.50 1 0 1 0 0 0 0
................................................................................................................TTTCCATCTTCAATACAAACAGT................................................. 23 3 2 0.50 1 1 0 0 0 0 0
................................................................................................................TGCCCATCTTAAATACGAACAGC................................................. 23 3 2 0.50 1 1 0 0 0 0 0
................................................................................................................TGTTCATCTTCAATACGAACATT................................................. 23 3 3 0.33 1 1 0 0 0 0 0
..................................................................................................................................AGAGGGACCACCACCACA.................................... 18 2 6 0.17 1 0 0 1 0 0 0
.......................................................................................................................................GACCACCAGCTAAGGTCCC.............................. 19 3 6 0.17 1 0 0 1 0 0 0
..........................CCGGTTCGTCGCCCCGACG........................................................................................................................................... 19 3 15 0.07 1 0 0 1 0 0 0
....................................................................................................................CATCTTCACTAAGAACAG.................................................. 18 2 15 0.07 1 0 0 1 0 0 0

Anti-sense strand reads

CGTTGTGTTGTTGTTACATAGGGCGTGGCCACGCAGTGGGGCGGCGGCCCCATTCATAATTTCTAACGTTACCCTGGGTTAGTTCACAATATGATTAACACAAAGCGGGGGTACAGGTAGAAGTTATGCTTGTCCCTGGTGGTGGAGTCCCGGGTTAGTTTAAATGGTAACGGCTATGTAACCT

**************************************************((..(((((.(((((....(((((..........(((..((((.....))))..))).)))))....))))).)))))..))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046

female body

 V056

head

 V049

head
..........................GGCCAGGCAGGGGGCCGGC........................................................................................................................................... 19 3 9 0.22 2 2 0 0
....................................................................................................................GTAGAAGTGATTCTTGTC.................................................. 18 2 15 0.07 1 1 0 0
.....................................................................................................AAAGCGGGGATACGGGT.................................................................. 17 2 17 0.06 1 0 1 0
..................................................................................................TACCAGGCGGGGGTACAG.................................................................... 18 3 20 0.05 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droMoj3 scaffold_6540:15826563-15826746 + dmo_1964 confident GCA--------------ACACAACAACAATGTATCCCGCACCGGTGCGTCACCCCGCCGCCGGGGTAAGTA--TTAAAGATTGCAATGGGAC-----CCA-------------------------------ATC-A-AGTGT-------------------------------------------------TAT----ACTAATT--GTGTTTCG----------------C---C------------------------------------------------------------------------------------------------------------------------CCC---------------AT--GTCCATCTT-------CAATACG--AACAGGGACCACCACCTCAGGGCCCAATCAAATTTACCATTGCCGATACATTGGA
droVir3 scaffold_13047:5452795-5452977 + dvi_24636 candidate-rescued GCA--------------ACACAACAACAATGTATCCCGCACCGGTGCGTCACCCCGCCGCCGGGGTAAGTA--TAC-AGATTGCACTGGGAC-----CCA-------------------------------ATC-A-AGTGT-------------------------------------------------TTT----GCTAATT--GTGTTTCG----------------C---C------------------------------------------------------------------------------------------------------------------------CCC---------------AT--GTCCATCTT-------CAATACG--TACAGGGACCACCACCTCAGGGTCCAATCAAATTTACCATTGCCGATACACTGGA
droGri2 scaffold_14906:10827906-10828099 + GCAAC-----ATCAACACAACAACAACAATGTATCCCGCACCGGTGCGTCACCCCGCCGCCGGGGTAAGTATTTAACAGATTGCAATGGGAC-----CCA-------------------------------ATC-A-AGTGT-------------------------------------------------TTT----GCTAATT--GTGTTTCG----------------C---C-------------------------------------------------------------------------------------------------------------------------CC---------------AT--GTCCATCTC-------TATCTCT--CTCAGGGACCACCACCTCAGGGCCCAATCAAATTCACCATTGCCGATACATTGGA
droWil2 scf2_1100000004943:15498544-15498762 + GCA-------------ACAAAAACAAA-ATGTATCCCGCACCGGTGCGTCACCCTGCCGCCGGGGTAAGTA--ACATCC----------TCCTACAACTA-CTC----------C--------TACACCTAAGTGTTAATGTCAACCA-ATTCAT------------------------------------------------TT--GGGTTTATCCTAATTGACCACCCCG---TCTCTCTTTC-----------------------------------------T----T----------------------------------------------------------------------------TG-------------------TATTCCTAATCAATTATAGGGACCACCACCTCAGGGCCCAATCAAATTTACCATTGCTGACACATTGGA
dp5 2:19171210-19171489 - ATA---------------AATAACAAC-ATGTATCCCCAACCGGTGCGTCACCCCGCGGCCGGGGTAAGTA--CCACCAAT----------------CCA-CTCCATACAGCCCCGCAGAGCCGAGACCCGAGCCACATTGTTGTCCACACTCTCTCGGG---CCTCTCCTCCCCTCCCCCCCACCG----ATT----GCTAATT--GTGTTTCT----------------T---CCTTTTTCTCACTCC-C--------------TCTCGCTCGCCGACTGTTTA----------------------------TCCCCCCCGCACTTGGCACAC--------------------------------------------------------------------CTCAGGGACCACCACCTCAGGGCCCAATCAAATTTACCATTGCCGATACATTGGA
droPer2 scaffold_3:1916524-1916802 - ATA---------------AATAACAAC-ATGTATCCCCAACCGGTGCGTCACCCCGCGGCCGGGGTAAGTA--CCACCAAT----------------CCA-CTCCACACAGCCCCGCAGAGCCGAGACCCGAGCCACATTGTTGTCCACACTCTCTCGGC---CCTCGCCTCCCCTCCCCCCCACCG----ATT----GCTAATT--GTGTTTCT----------------T---CCTTTTTCTCACTCC-C--------------TCTCGCTCGCCGACTGTTTA----------------------------TC-CCCCCGCACTTGGCACAC--------------------------------------------------------------------CTCAGGGACCACCACCTCAGGGCCCAATCAAATTTACCATTGCCGATACATTGGA
droAna3 scaffold_13340:11273901-11274077 - GTAGA-----------ATAATAACAAC-ATGTATCCCTCACCGGTGCGTCACCCCGCGGCAGGGGTAAGTT--GGT---------------------------------------------------------------CATTGGTCACTCGCTGTCGGC---CTCCTC------------------------------CTA-AT--GTGTACCA----------------C---CTTCTATCCC------------------------------------------------------------------------------------------------------------------------A---------------------------CCCATCTA--TATAGGGACCACCACCTCAGGGCCCGATTAAGTTCACTATCGCCGATACCTTAGA
droBip1 scf7180000396691:183495-183691 - G---CATAACGT-AGAATAATAACAAC-ATGTATCCCTCACCGGTGCGTCACCCCGCCGCAGGGGTAAGTT--CACCTAG-TCCCATTGGTC-------------------------------------------------------ACTCGCTGTCGGT---C-----------------------------T----TCTAA-T--GTGTCCCC---------------------CTTTTTTCC---------------------------------------------------------------------------------------------------------------CCC---------------ATCTATCCATCT----------ATCAC--TCCAGGGACCACCACCTCAGGGCCCGATTAAGTTCACTATCGCCGATACCTTAGA
droKik1 scf7180000302261:84617-84828 - GTA--------------GAATAACAAC-ATGTATCCCTCACCGGTGCGTCACCCCGCCGCCGGGGTAAGTT--CACCACA---CAGTC---------CGGTA----------TCT-----------------------------------------T---GACC---------------C-----------TGTGCCCGCTAATCATGTGTGTC---------------------TCTCTCTCTCT--A-------------------------------------T----GTCT--CCCCCACCCCAC--GTGTC------------------------------------------------CACCTA-CCC----------------A--CGCATTCC--AATAGGGACCACCACCTCAGGGCCCAATTAAGTTCACCATCGCCGACACATTGGA
droFic1 scf7180000454055:1778669-1778919 + G---C-----------CTAACAACAAC-ATGTATCCCTCACCGGTGCGCCACCCCGCCGCCGGGGTAAGTT--TATTTGC---AAATAAATC-----CAACC----------TCT---------------------------------------------GACC---------------C-----CAAGTCCGT----GCTAATT--GTGCTTCT----------------G---TCTCTCCCTCTCTCC-CTCTCTCCCTCTCTC--------------------C----CCCG--TC---GCCTCATGTGTGCCGCCCACTTA--CT----------------------CGAC-----CACCCACCC---------------------ATTTGGATCCG--CGTAGGGACCACCTCCTCAGGGTCCAATCAAGTTCACCATCGCCGACACATTGGA
droEle1 scf7180000491261:839865-840099 - G---C-----------CTAACAACAAC-ATGTATCCCTCACCGGTGCGCCACCCCGCCGCCGGGGTAAGTT--CACCAGACC-CGACGGGTC-----CAATC----------TCT---------------------------------------------GGCC---------------C----CCAAATCTGT----GCTAATT--GTGTTTCT----------------G---TCTCTATCTA-----------------------------------------C----CCCG--CCGCCTTGCCAT--GTGCCGCCCACACT--A----------------------TTGAC-----CCGCCACCC---------------------ATCAACACTTT--CGCAGGGACCACCTCCTCAGGGTCCAATCAAGTTCACCATCGCCGACACACTGGA
droRho1 scf7180000780074:219482-219716 + G---C-----------CTAACAACAAC-ATGTATCCCTCACCGGTGCGCCACCCCGCCGCCGGGGTAAGTT--CTCCCGAT--CAATGGGTC-----CAATT----------TCT---------------------------------------------GGCC---------------C----CCAGATCCGT----GCTAATT--GTGTCTCT----------------G---TCTCTCTCTC-----------------------------------------C----TCCG--CCACCGCGCCATGT-TTCCGCCCACCCT--T----------------------TTGAC-----CACGCACCA---------------------ATCCCCATCCT--GGCAGGGACCACCTCCTCAGGGTCCAATCAAGTTCACCATCGCCGACACACTGGA
droBia1 scf7180000302113:2070749-2070960 + G---C-----------CTAACAACAAC-ATGTATCCCTCACCGGTGCGCCACCCCGCCGCCGGGGTAAGTC--CAACCGC-----------------CCACC----------CCC---------------------------------------------GAGC---------------C----CCGAATCCGT----GCTAATT--GTGTTTC-----------------G---TTTCTCCCTC-----------------------------------------TCC--CTC---CC---ACGCCATGTGATCCGCCCGC-----------------CACA-------------------------TC-------------------GATGTCCGCCTG--CACAGGGACCACCTCCTCAGGGTCCAATCAAGTTCACCATCGCCGACACACTGGA
droTak1 scf7180000415851:309964-310186 - G---C-----------CTAACAACAAC-ATGTATCCCTCACCGGTGCGCCACCCCGCCGCCGGGGTAAGTT--CAACCGA---AAACCCACC-----C-A-C----------TCT---------------------------------------------GACC---------------C----CCGAATCCGT----GCTAATT--GTGTTTCT----------------GTTGTTTCTCTCCC-----------------------------------------C-----CCA--CCACCTCGCCAT--GTG-----------------------ACCACC-------------------------TAATCC----------TC-GGTATCCAC--CTG-ATGCAGGGACCACCACCTCAGGGTCCAATCAAGTTCACCATCGCCGACACACTGGA
droEug1 scf7180000409682:743887-744127 - G---C-----------CTAACAACAAC-ATGTATCCCTCACCGGTGCGCCACCCTGCCGCCGGGGTAAGTT--CACCCGC---GATGGGGAC-----CAACC----------TCT---------------------------------------------GACC---------------C----TTAAATCCGT----GCTAATT--GTGTTTCT----------------G---TCTCTCTCTC-----------------------------------------CC---CATT--AC---GCGCCAT--GTACCACCCACTCA--T----------------CATCTATTGAAC-ACGCGCCCACTC---------------------ACTTACATCCG--AATAGGGACCACCACCTCAGGGTCCAATTAAATTCACCATCGCCGACACATTGGA
dm3 chr3R:21869053-21869286 + CCAGC-----------C---TAACAAC-ATGTATCCCTCACCGGTGCGCCACCCCGCCGCCGGGGTAAGTT--CACCCGA---CAGTGGGTC-----CCACC----------TCT---------------------------------------------GACC---------------C----CCGAATCCGT----GCTAATT--GTGTTTAT----------------G---TCTCTTTCCA-----------------------------------------C----CACG--CC---GCGCCAT--GTGCCGCCCACGTA--CGGAACACCAACCACC-------------------------TC-------------------TATTCACATCTA--AATAGGGACCACCACCTCAGGGTCCAATCAAGTTCACCATCGCCGATACACTGGA
droSim2 3r:21366041-21366274 + CCAGC-----------C---TAACAAC-ATGTATCCCTCACCGGTGCGCCACCCCGCCGCCGGGGTAAGTT--CACCCGC---CAGCGGGTC-----CCACC----------TCT---------------------------------------------GACC---------------C----CCGAATCCGT----GCTAATT--GTGTTTAT----------------G---TCTCTCTCCC-----------------------------------------C----CACG--CC---GCGCCAT--GTGCCGCCCACGCA--CGTAACACCAACCACC-------------------------TC-------------------TATTCACGTCCA--AATAGGGACCACCACCTCAGGGTCCAATCAAGTTCACCATCGCCGACACACTGGA
droSec2 scaffold_13:663565-663797 + CCAGC-----------C---TAACAAC-ATGTATCCCTCACCGGTGCGCCACCCCGCCGCCGGGGTAAGTT--CACCCGC---CAGCGGGTC-----CCACC----------TCT---------------------------------------------GACC---------------C-----CGAATCCGT----GCTAATT--GTGTTTAT----------------G---TCTCTCTCCC-----------------------------------------C----CACG--CC---GCGCCAT--GTGCCGCCCACGCA--CGTAACACCAACCACC-------------------------TC-------------------TATTCACGTCCA--AATAGGGACCACCACCTCAGGGTCCAATCAAGTTCACCATCGCCGACACACTGGA
droYak3 3R:24605979-24606239 - G---C-----------CTAACAACAAC-ATGTATCCCTCACCGGTGCGCCACCCCGCCGCCGGGGTAAGTT--CACCCGC---AAGTGGGTT-----CCACC----------TCT---------------------------------------------GACC---------------C----CCGAATCCGT----GCTAATT--GTGTTTAT----------------G---TCTCTCTCTCTCAACCCTCA--------CCC--------------------CACAACACT--TC---GTGCCAT--GTGCCGCCCACGCA--TGGAACACCAAAAACCTCACCTATTTAC----------------------------------CATTCACGTCCA--AATAGGGACCACCACCTCAGGGTCCAATCAAGTTCACCATCGCCGACACACTGGA
droEre2 scaffold_4820:6176657-6176898 - G---C-----------CTAACAACAAC-ATGTATCCCTCACCGGTGCGCCACCCCGCCGCCGGGGTAAGTT--CACCCGC---CAGTGGGTT-----CTACC----------TCT---------------------------------------------GACC---------------C----CCGAATCCGT----GCTAATT--GTGTTTAT----------------G---TCTCTCTCTC-----------------------------------------C----C-CGACCC---GTGCCACATGTGCCGCCCACGCA--TGGAACACCAACCACC-------------------------TA-------------TTC-ACTATTCACGTCGA--AATAGGGACCACCACCTCAGGGTCCAATCAAGTTCACCATCGCCGACACACTGGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
GCA--------------ACACAACAACAATGTATCCCGCACCGGTGCGTCACCCCGCCGCCGGGGTAAGTA--TTAAAGATTGCAATGGGAC-----CCA-------------------------------ATC-A-AGTGT-------------------------------------------------TAT----ACTAATT--GTGTTTCG----------------C---C------------------------------------------------------------------------------------------------------------------------CCC---------------AT--GTCCATCTT-------CAATACG--AACAGGGACCACCACCTCAGGGCCCAATCAAATTTACCATTGCCGATACATTGGASizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................T--GTCCATCTT-------CAATACG--AACAGT.................................................2311632.001632601154588128539
.......................................................................................................................................................................................................................................................................................................................................................................................T--GTCCATCTT-------CAATACG--AACAGC.................................................231256.0025600012550
.......................................................................................................................................................................................................................................................................................................................................................................................T--GTCCATCTT-------CAATACG--AACAG..................................................221100.00100301326490
......................................................................................................................................................................................................................................................................................................................................................................................AT--GTCCATCTT-------CAATACG--AACAG..................................................23184.008411312670
......................................................................................................................................................................................................................................................................................................................................................................................AT--GTCCATCTT-------CAATACG--AACAGT.................................................24178.00782201730
......................................................................................................................................................................................................................................................................................................................................................................................AT--GTCCATCTT-------CAATACG--AACA...................................................22165.00658932430
.......................................................................................................................................................................................................................................................................................................................................................................................T--GTCCATCTT-------CAATACG--AACAGTT................................................24143.00430203380
......................................................................................................................................................................................................................................................................................................................................................................................AT--GTCCATCTT-------CAATACG--AAC....................................................21133.003311213151
.......................................................................................................................................................................................................................................................................................................................................................................................T--GTCCATCTT-------CAATACG--AACAGA.................................................23125.00252610160
.......................................................................................................................................................................................................................................................................................................................................................................................T--GTCCATCTT-------CAATACG--AACA...................................................21125.00251203550
.......................................................................................................................................................................................................................................................................................................................................................................................T--GTCCATCTT-------CAATACG--AAC....................................................20117.0017703601
..........................................................................................................................................................................................................................................................................................................................................................................................GTCCATCTT-------CAATACG--AACAGT.................................................22114.00144000100
................................................................GTAAGTA--TTAAAGATTGCAATGG.................................................................................................................................................................................................................................................................................................................................................................................23113.0013270031
......................................................................................................................................................................................................................................................................................................................................................................................AT--GTCCATCTT-------CAATACG--AACAGC.................................................24110.00100000100
.................................................................TAAGTA--TTAAAGATTGCAATGG.................................................................................................................................................................................................................................................................................................................................................................................2219.009150021
................................................................GTAAGTA--TTAAAGATTGCAATG..................................................................................................................................................................................................................................................................................................................................................................................2218.008030050
.............................................................................................................................................................................................................................................................................................................................................................................................CATCTT-------CAATACG--AACAGT.................................................1918.008000080
......................................................................................................................................................................................................................................................................................................................................................................................AT--GTCCATCTT-------CAATACG--A......................................................1917.007500200
......................................................................................................................................................................................................................................................................................................................................................................C---------------AT--GTCCATCTT-------CAATACG--AAC....................................................2217.007000070
................................................................GTAAGTA--TTAAAGATTGCAATGGGA...............................................................................................................................................................................................................................................................................................................................................................................2515.005010004
..........................................................................................................................................................................................................................................................................................................................................................................................GTCCATCTT-------CAATACG--AACAG..................................................2115.005500000
..............................................................................................................................................................................................................................................................................................................................................................................................ATCTT-------CAATACG--AACAGT.................................................1815.005000050
......................................................................................................................................................................................................................................................................................................................................................................................AT--GTCCATCTT-------CAATACG--AA.....................................................2014.004101200
......................................................................................................................................................................................................................................................................................................................................................................................AT--GTCCATCTT-------CAATACG--AACAA..................................................2314.004000040
............................................................................................................................................................................................................................................................................................................................................................................................CCATCTT-------CAATACG--AACAGT.................................................2014.004100030
................................................................GTAAGTA--TTAAAGATTGCAAT...................................................................................................................................................................................................................................................................................................................................................................................2114.004120100
......................................................................................................................................................................................................................................................................................................................................................................................AT--GTCCATCTT-------CAATACG--AACAGA.................................................2413.003000030
.............................................................................................................................................................................................................................................................................................................................................................................................CATCTT-------CAATACG--AACAGC.................................................1913.003000030
.......................................................................................................................................................................................................................................................................................................................................................................................T--GTCCATCTT-------CAATACG--AACAGG.................................................2313.003000120
.......................................................................................................................................................................................................................................................................................................................................................................................T--GTCCATCTT-------CAATACG--AACAGTC................................................2413.003200010
................................................................GTAAGTA--TTAAAGATTGCAATGGG................................................................................................................................................................................................................................................................................................................................................................................2413.003110010
.......................................................................................................................................................................................................................................................................................................................................................................................T--GTCCATCTT-------CAATACG--AA.....................................................1912.002002000
...........................................................................................................................................................................................................................................................................................................................................................................................TCCATCTT-------CAATACG--AACAGT.................................................2112.002000020
..........................................................................................................................................................................................................................................................................................................................................................................................GTCCATCTT-------CAATACG--AAC....................................................1912.002200000
..........................................................................................................................................................................................................................................................................................................................................................................................GTCCATCTT-------CAATACG--AACAGC.................................................2212.002000020
......................................................................................................................................................................................................................................................................................................................................................................................AT--GTCCATCTT-------CAATACG--AACAGTT................................................2512.002010010
.......................................................................................................................................................................................................................................................................................................................................................................................T--GTCCATCTT-------CAATACG--AACAGTTT...............................................2511.001100000
......................................................................................................................................................................................................................................................................................................................................................................C---------------AT--GTCCATCTT-------CAATACG--AACAGT.................................................2511.001000010
......................................................................................................................................................................................................................................................................................................................................................................................AT--GTCCATCTT-------CAATACG--AACT...................................................2211.001000010
.....................................................................................................................................................................................................................................................................................................................................................................CC---------------AT--GTCCATCTT-------CAATACG--AAC....................................................2311.001100000
......................................................................................................................................................................................................................................................................................................................................................................................AT--GTCCATCTT-------CAATACG--AAA....................................................2111.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................T--GTCCATCTT-------CAATACG--AACATT.................................................2311.001001000
..........................................................................................................................................................................................................................................................................................................................................................................................GTCCATCTT-------CAATACG--AACAGA.................................................2211.001000010
..............................................................................................................................................................................................................................................................................................................................................................................................ATCTT-------CAATACG--AACAGC.................................................1821.002000020
......................................................................................................................................................................................................................................................................................................................................................................C---------------AT--GTCCATCTT-------CAATACG--AACAGC.................................................2511.001000010
...........................................................................................................................................................................................................................................................................................................................................................................................TCCATCTT-------CAATACG--AACAG..................................................2011.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................T--GTCCATCTT-------CAATACG--AACAAC.................................................2311.001000010
............................................................................AAGATTGCAATGGGAC-----CCA-------------------------------.......................................................................................................................................................................................................................................................................................................................................1911.001000010
................................................................GTAAGTA--TTAAAGATTGCAA....................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
......................................................................................................................................................................................................................................................................................................................................................................C---------------AT--GTCCATCTT-------CAATACG--AACA...................................................2311.001000010
......................................................................................................................................................................................................................................................................................................................................................................C---------------AT--GTCCATCTT-------CAATACG--A......................................................2011.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................T--GTCCATCTT-------CAATACG--AACACT.................................................2311.001010000
......................................................................................................................................................................................................................................................................................................................................................................C---------------AT--GTCCATCTT-------CAATACG--AACAG..................................................2411.001000010
...........................................................................................................................................................................................................................................................................................................................................................................................TCCATCTT-------CAATACG--AACAC..................................................2011.001000010
............................................................................................................................................................................................................................................................................................................................................................................................CCATCTT-------CAATACG--AACAG..................................................1911.001100000
.................................................................TAAGTA--TTAAAGATTGCAATGGG................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................GTCCATCTT-------CAATACG--AACA...................................................2011.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................CATCTT-------CAATACG--AACAGTA................................................2011.001000010
......................................................................................................................................................................................................................................................................................................................................................................................AT--GTCCATCTT-------CAATACG--T......................................................1911.001001000
...........................................................................................................................................................................................................................................................................................................................................................................................TCCATCTT-------CAATACG--AACAGC.................................................2111.001000010
droVir3
GCA--------------ACACAACAACAATGTATCCCGCACCGGTGCGTCACCCCGCCGCCGGGGTAAGTA--TAC-AGATTGCACTGGGAC-----CCA-------------------------------ATC-A-AGTGT-------------------------------------------------TTT----GCTAATT--GTGTTTCG----------------C---C------------------------------------------------------------------------------------------------------------------------CCC---------------AT--GTCCATCTT-------CAATACG--TACAGGGACCACCACCTCAGGGTCCAATCAAATTTACCATTGCCGATACACTGGASizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
................................................................GTAAGTA--TAC-AGATTGCACTGGGAC-----CC.......................................................................................................................................................................................................................................................................................................................................................................2716.0060000000000000000000000000000000000000000000000000000000000000000001100000100111
................................................................GTAAGTA--TAC-AGATTGCACTGGGAC-----.........................................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000010200000000000000000000000000000000000000000000000
................................................................GTAAGTA--TAC-AGATTGCACTGGGAC-----C........................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000011
................................................................GTAAGTA--TAC-AGATTGCACTGGGA...............................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000100000000000000000000000000000000000010000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACCATTGCCGATAC......1711.0010000000000000000000000000000000000000000000000000000000000000010000000000000000
.........................................................................TAC-AGATTGCACTGGGAC-----CC.......................................................................................................................................................................................................................................................................................................................................................................2011.0011000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................GTAAGTA--TAC-AGATTGCAC....................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
..........................CAATGTATCCCGCACCGGTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
..A--------------ACACAACAACAATGTATCCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................CCACCTCAGGGTCCAATCAAA.......................2111.0010000000000000000000000000000000000001000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................CACCTCAGGGTCCAATCAAATTT....................2311.0010000000000000000100000000000000000000000000000000000000000000000000000000000000
droGri2
GCAAC-----ATCAACACAACAACAACAATGTATCCCGCACCGGTGCGTCACCCCGCCGCCGGGGTAAGTATTTAACAGATTGCAATGGGAC-----CCA-------------------------------ATC-A-AGTGT-------------------------------------------------TTT----GCTAATT--GTGTTTCG----------------C---C-------------------------------------------------------------------------------------------------------------------------CC---------------AT--GTCCATCTC-------TATCTCT--CTCAGGGACCACCACCTCAGGGCCCAATCAAATTCACCATTGCCGATACATTGGASizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
.............................................GCGTCACCCCGCCGCCGGGGG........................................................................................................................................................................................................................................................................................................................................................................................................2111.00110
droWil2
GCA-------------ACAAAAACAAA-ATGTATCCCGCACCGGTGCGTCACCCTGCCGCCGGGGTAAGTA--ACATCC----------TCCTACAACTA-CTC----------C--------TACACCTAAGTGTTAATGTCAACCA-ATTCAT------------------------------------------------TT--GGGTTTATCCTAATTGACCACCCCG---TCTCTCTTTC-----------------------------------------T----T----------------------------------------------------------------------------TG-------------------TATTCCTAATCAATTATAGGGACCACCACCTCAGGGCCCAATCAAATTTACCATTGCTGACACATTGGASizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
No Reads
dp5
ATA---------------AATAACAAC-ATGTATCCCCAACCGGTGCGTCACCCCGCGGCCGGGGTAAGTA--CCACCAAT----------------CCA-CTCCATACAGCCCCGCAGAGCCGAGACCCGAGCCACATTGTTGTCCACACTCTCTCGGG---CCTCTCCTCCCCTCCCCCCCACCG----ATT----GCTAATT--GTGTTTCT----------------T---CCTTTTTCTCACTCC-C--------------TCTCGCTCGCCGACTGTTTA----------------------------TCCCCCCCGCACTTGGCACAC--------------------------------------------------------------------CTCAGGGACCACCACCTCAGGGCCCAATCAAATTTACCATTGCCGATACATTGGASizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
ATA---------------AATAACAAC-ATGTATCCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACCATTGCCGATACATTG..2011.0010100000000
droPer2
ATA---------------AATAACAAC-ATGTATCCCCAACCGGTGCGTCACCCCGCGGCCGGGGTAAGTA--CCACCAAT----------------CCA-CTCCACACAGCCCCGCAGAGCCGAGACCCGAGCCACATTGTTGTCCACACTCTCTCGGC---CCTCGCCTCCCCTCCCCCCCACCG----ATT----GCTAATT--GTGTTTCT----------------T---CCTTTTTCTCACTCC-C--------------TCTCGCTCGCCGACTGTTTA----------------------------TC-CCCCCGCACTTGGCACAC--------------------------------------------------------------------CTCAGGGACCACCACCTCAGGGCCCAATCAAATTTACCATTGCCGATACATTGGASizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
No Reads
droAna3
GTAGA-----------ATAATAACAAC-ATGTATCCCTCACCGGTGCGTCACCCCGCGGCAGGGGTAAGTT--GGT---------------------------------------------------------------CATTGGTCACTCGCTGTCGGC---CTCCTC------------------------------CTA-AT--GTGTACCA----------------C---CTTCTATCCC------------------------------------------------------------------------------------------------------------------------A---------------------------CCCATCTA--TATAGGGACCACCACCTCAGGGCCCGATTAAGTTCACTATCGCCGATACCTTAGASizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
........................AAC-ATGTATCCCTCACCGGTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGTTCACTATCGCCGATACCTT...2511.001010000
..........................................GGTGCGTCACCCCGCGGCAGGG..........................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
................................ATCCCTCACCGGTGCGTCACC.....................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
droBip1
G---CATAACGT-AGAATAATAACAAC-ATGTATCCCTCACCGGTGCGTCACCCCGCCGCAGGGGTAAGTT--CACCTAG-TCCCATTGGTC-------------------------------------------------------ACTCGCTGTCGGT---C-----------------------------T----TCTAA-T--GTGTCCCC---------------------CTTTTTTCC---------------------------------------------------------------------------------------------------------------CCC---------------ATCTATCCATCT----------ATCAC--TCCAGGGACCACCACCTCAGGGCCCGATTAAGTTCACTATCGCCGATACCTTAGASizeHit CountTotal NormTotal
No Reads
droKik1
GTA--------------GAATAACAAC-ATGTATCCCTCACCGGTGCGTCACCCCGCCGCCGGGGTAAGTT--CACCACA---CAGTC---------CGGTA----------TCT-----------------------------------------T---GACC---------------C-----------TGTGCCCGCTAATCATGTGTGTC---------------------TCTCTCTCTCT--A-------------------------------------T----GTCT--CCCCCACCCCAC--GTGTC------------------------------------------------CACCTA-CCC----------------A--CGCATTCC--AATAGGGACCACCACCTCAGGGCCCAATTAAGTTCACCATCGCCGACACATTGGASizeHit CountTotal NormTotal
No Reads
droFic1
G---C-----------CTAACAACAAC-ATGTATCCCTCACCGGTGCGCCACCCCGCCGCCGGGGTAAGTT--TATTTGC---AAATAAATC-----CAACC----------TCT---------------------------------------------GACC---------------C-----CAAGTCCGT----GCTAATT--GTGCTTCT----------------G---TCTCTCCCTCTCTCC-CTCTCTCCCTCTCTC--------------------C----CCCG--TC---GCCTCATGTGTGCCGCCCACTTA--CT----------------------CGAC-----CACCCACCC---------------------ATTTGGATCCG--CGTAGGGACCACCTCCTCAGGGTCCAATCAAGTTCACCATCGCCGACACATTGGASizeHit CountTotal NormTotal
No Reads
droEle1
G---C-----------CTAACAACAAC-ATGTATCCCTCACCGGTGCGCCACCCCGCCGCCGGGGTAAGTT--CACCAGACC-CGACGGGTC-----CAATC----------TCT---------------------------------------------GGCC---------------C----CCAAATCTGT----GCTAATT--GTGTTTCT----------------G---TCTCTATCTA-----------------------------------------C----CCCG--CCGCCTTGCCAT--GTGCCGCCCACACT--A----------------------TTGAC-----CCGCCACCC---------------------ATCAACACTTT--CGCAGGGACCACCTCCTCAGGGTCCAATCAAGTTCACCATCGCCGACACACTGGASizeHit CountTotal NormTotal
No Reads
droRho1
G---C-----------CTAACAACAAC-ATGTATCCCTCACCGGTGCGCCACCCCGCCGCCGGGGTAAGTT--CTCCCGAT--CAATGGGTC-----CAATT----------TCT---------------------------------------------GGCC---------------C----CCAGATCCGT----GCTAATT--GTGTCTCT----------------G---TCTCTCTCTC-----------------------------------------C----TCCG--CCACCGCGCCATGT-TTCCGCCCACCCT--T----------------------TTGAC-----CACGCACCA---------------------ATCCCCATCCT--GGCAGGGACCACCTCCTCAGGGTCCAATCAAGTTCACCATCGCCGACACACTGGASizeHit CountTotal NormTotal
No Reads
droBia1
G---C-----------CTAACAACAAC-ATGTATCCCTCACCGGTGCGCCACCCCGCCGCCGGGGTAAGTC--CAACCGC-----------------CCACC----------CCC---------------------------------------------GAGC---------------C----CCGAATCCGT----GCTAATT--GTGTTTC-----------------G---TTTCTCCCTC-----------------------------------------TCC--CTC---CC---ACGCCATGTGATCCGCCCGC-----------------CACA-------------------------TC-------------------GATGTCCGCCTG--CACAGGGACCACCTCCTCAGGGTCCAATCAAGTTCACCATCGCCGACACACTGGASizeHit CountTotal NormTotal
No Reads
droTak1
G---C-----------CTAACAACAAC-ATGTATCCCTCACCGGTGCGCCACCCCGCCGCCGGGGTAAGTT--CAACCGA---AAACCCACC-----C-A-C----------TCT---------------------------------------------GACC---------------C----CCGAATCCGT----GCTAATT--GTGTTTCT----------------GTTGTTTCTCTCCC-----------------------------------------C-----CCA--CCACCTCGCCAT--GTG-----------------------ACCACC-------------------------TAATCC----------TC-GGTATCCAC--CTG-ATGCAGGGACCACCACCTCAGGGTCCAATCAAGTTCACCATCGCCGACACACTGGASizeHit CountTotal NormTotal
No Reads
droEug1
G---C-----------CTAACAACAAC-ATGTATCCCTCACCGGTGCGCCACCCTGCCGCCGGGGTAAGTT--CACCCGC---GATGGGGAC-----CAACC----------TCT---------------------------------------------GACC---------------C----TTAAATCCGT----GCTAATT--GTGTTTCT----------------G---TCTCTCTCTC-----------------------------------------CC---CATT--AC---GCGCCAT--GTACCACCCACTCA--T----------------CATCTATTGAAC-ACGCGCCCACTC---------------------ACTTACATCCG--AATAGGGACCACCACCTCAGGGTCCAATTAAATTCACCATCGCCGACACATTGGASizeHit CountTotal NormTotal
No Reads
dm3
CCAGC-----------C---TAACAAC-ATGTATCCCTCACCGGTGCGCCACCCCGCCGCCGGGGTAAGTT--CACCCGA---CAGTGGGTC-----CCACC----------TCT---------------------------------------------GACC---------------C----CCGAATCCGT----GCTAATT--GTGTTTAT----------------G---TCTCTTTCCA-----------------------------------------C----CACG--CC---GCGCCAT--GTGCCGCCCACGTA--CGGAACACCAACCACC-------------------------TC-------------------TATTCACATCTA--AATAGGGACCACCACCTCAGGGTCCAATCAAGTTCACCATCGCCGATACACTGGASizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAATCAAGTTCACCATCGCC...........2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................C---TAACAAC-ATGTATCCCTCACCGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................TCCGT----GCTAATT--GTGTTTAT----------------G---TCTCTT.........................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGGTCCAATCAAGTTCACCA................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................CACC----------TCT---------------------------------------------GACC---------------C----CCGAATCCG.........................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
..............................................................................................................................................................................................................................................................................................................................................................................................................................CCACCTCAGGGTCCAATCAAGTTCA...................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTTCACCATCGCCGATACACTGG.2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTTCACCATCGCCGATAC......2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAATCAAGTTCACCATCGCCGATACAC....2911.001000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAATCAAGTTCACCATCGC............2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................CACCTCAGGGTCCAATCAAGTTCAC..................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................GTGCCGCCCACGTA--CGGG...............................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................CAAC-ATGTATCCCTCACCGGTGCGC.........................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..................................................................................................................................................................................................................TTTAT----------------G---TCTCTTTCCA-----------------------------------------C----CACG--CC---GC..........................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................TCCGT----GCTAATT--GTGTTTAT----------------G---TCTC...........................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
.........................................................................................................................................................................................CGAATCCGT----GCTAATT--GTGTT......................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.........................AC-ATGTATCCCTCACCGGTG............................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
droSim2
CCAGC-----------C---TAACAAC-ATGTATCCCTCACCGGTGCGCCACCCCGCCGCCGGGGTAAGTT--CACCCGC---CAGCGGGTC-----CCACC----------TCT---------------------------------------------GACC---------------C----CCGAATCCGT----GCTAATT--GTGTTTAT----------------G---TCTCTCTCCC-----------------------------------------C----CACG--CC---GCGCCAT--GTGCCGCCCACGCA--CGTAACACCAACCACC-------------------------TC-------------------TATTCACGTCCA--AATAGGGACCACCACCTCAGGGTCCAATCAAGTTCACCATCGCCGACACACTGGASizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
...................................CCTCACCGGTGCGCCACCCCGC.................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100001000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACCATCGCCGACACACTGGA2211.00100100000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAGTTCACCATCGCCGACACACTGGA2811.00100000010000000000
droSec2
CCAGC-----------C---TAACAAC-ATGTATCCCTCACCGGTGCGCCACCCCGCCGCCGGGGTAAGTT--CACCCGC---CAGCGGGTC-----CCACC----------TCT---------------------------------------------GACC---------------C-----CGAATCCGT----GCTAATT--GTGTTTAT----------------G---TCTCTCTCCC-----------------------------------------C----CACG--CC---GCGCCAT--GTGCCGCCCACGCA--CGTAACACCAACCACC-------------------------TC-------------------TATTCACGTCCA--AATAGGGACCACCACCTCAGGGTCCAATCAAGTTCACCATCGCCGACACACTGGASizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
........................AAC-ATGTATCCCTCACCGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
droYak3
G---C-----------CTAACAACAAC-ATGTATCCCTCACCGGTGCGCCACCCCGCCGCCGGGGTAAGTT--CACCCGC---AAGTGGGTT-----CCACC----------TCT---------------------------------------------GACC---------------C----CCGAATCCGT----GCTAATT--GTGTTTAT----------------G---TCTCTCTCTCTCAACCCTCA--------CCC--------------------CACAACACT--TC---GTGCCAT--GTGCCGCCCACGCA--TGGAACACCAAAAACCTCACCTATTTAC----------------------------------CATTCACGTCCA--AATAGGGACCACCACCTCAGGGTCCAATCAAGTTCACCATCGCCGACACACTGGASizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
............................ATGTATCCCTCACCGGTGCGCC........................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
droEre2
G---C-----------CTAACAACAAC-ATGTATCCCTCACCGGTGCGCCACCCCGCCGCCGGGGTAAGTT--CACCCGC---CAGTGGGTT-----CTACC----------TCT---------------------------------------------GACC---------------C----CCGAATCCGT----GCTAATT--GTGTTTAT----------------G---TCTCTCTCTC-----------------------------------------C----C-CGACCC---GTGCCACATGTGCCGCCCACGCA--TGGAACACCAACCACC-------------------------TA-------------TTC-ACTATTCACGTCGA--AATAGGGACCACCACCTCAGGGTCCAATCAAGTTCACCATCGCCGACACACTGGASizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................C-ACTATTCACGTCGA--AATAG..................................................2011.0011000000

Generated: 10/20/2015 at 07:30 PM