ID:

dmo_1962

 Coordinate:

scaffold_6540:15728724-15728874 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.8 -9.8 -9.8

Flybase annnotation

exon [dmoj_GLEANR_9807:2]; CDS [Dmoj\GI24680-cds]; intron [Dmoj\GI24680-in]

No Repeatable elements found

mature
  1. scaffold_4743:2560-2586 -
  2. scaffold_4743:11126-11152 -
  3. scaffold_6328:2554415-2554441 -
  4. scaffold_6473:14531843-14531869 -
  5. scaffold_6482:2012762-2012788 -
  6. scaffold_6496:3576101-3576127 -
  7. scaffold_6496:10044011-10044037 -
  8. scaffold_6496:23419841-23419867 -
  9. scaffold_6496:23651831-23651857 -
  10. scaffold_6500:11006399-11006425 -
  11. scaffold_6500:22438379-22438405 -
  12. scaffold_6500:32146955-32146981 -
  13. scaffold_6540:13396894-13396920 -
  14. scaffold_6540:14483474-14483500 -
  15. scaffold_6540:18824366-18824392 -
  16. scaffold_6540:25971638-25971664 -
  17. scaffold_6541:878901-878927 -
  18. scaffold_6654:222994-223020 -
  19. scaffold_6680:4526420-4526446 -
  20. scaffold_6680:15726581-15726607 -
  21. scaffold_1538:771-797 +
  22. scaffold_1796:3900-3926 +
  23. scaffold_6308:1641542-1641568 +
  24. scaffold_6400:5129-5155 +
  25. scaffold_6473:3194825-3194851 +
  26. scaffold_6473:7055861-7055887 +
  27. scaffold_6473:11123801-11123827 +
  28. scaffold_6473:12101442-12101468 +
  29. scaffold_6482:396996-397022 +
  30. scaffold_6482:843472-843498 +
  31. scaffold_6482:2480034-2480060 +
  32. scaffold_6496:5078084-5078110 +
  33. scaffold_6496:17232552-17232578 +
  34. scaffold_6496:25504823-25504849 +
  35. scaffold_6500:3089305-3089331 +
  36. scaffold_6500:20555684-20555710 +
  37. scaffold_6500:29610621-29610647 +
  38. scaffold_6501:172911-172937 +
  39. dmo_1962  scaffold_6540:15728760-15728786 +
  40. scaffold_6680:24103080-24103106 +
star
  1. scaffold_6308:1641578-1641598 +
  2. scaffold_6400:5165-5185 +
  3. scaffold_6473:11123837-11123857 +
  4. scaffold_6473:12101478-12101498 +
  5. scaffold_6482:843508-843528 +
  6. scaffold_6482:2480070-2480090 +
  7. scaffold_6482:2563713-2563733 +
  8. scaffold_6482:2644281-2644301 +
  9. scaffold_6496:4401082-4401102 +
  10. scaffold_6496:17232588-17232608 +
  11. scaffold_6500:3089341-3089361 +
  12. scaffold_6500:20555720-20555740 +
  13. scaffold_6500:22439943-22439963 +
  14. scaffold_6500:28191287-28191307 +
  15. scaffold_6500:28288242-28288262 +
  16. scaffold_6540:424159-424179 +
  17. scaffold_6540:1257324-1257344 +
  18. scaffold_6540:6552800-6552820 +
  19. dmo_1962  scaffold_6540:15728796-15728816 +
  20. scaffold_6541:1099611-1099631 +
  21. scaffold_1538:807-827 +
  22. scaffold_4101:2931-2951 +
  23. scaffold_6473:2106839-2106859 +
  24. scaffold_6473:3194861-3194881 +
  25. scaffold_6473:4319613-4319633 +
  26. scaffold_6473:7055897-7055917 +
  27. scaffold_6496:5078120-5078140 +
  28. scaffold_6496:25504859-25504879 +
  29. scaffold_6501:172947-172967 +
  30. scaffold_6540:423039-423059 +
  31. scaffold_6680:23730567-23730587 +
  32. scaffold_1796:3936-3956 +
  33. scaffold_6482:397032-397052 +
  34. scaffold_6500:29610657-29610677 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTATTGTTAGAGTAGCCATTCTTTTTGTATTTTAAAGAGAAATAAATGGAGTATAATGTAAAAAAATTTCAAAGATGGAGCTCTGCTGGTTTAGATTTTATTTAGCTTTGAGGTTGAGTGTAAAGGGGGGCGCTAACCTGATGACGCGCAGTGTATATATGTTTATATAAAGAGATATTTCATTAATTCCCATCTTTGCAGCGATATTTTGCCTGCTCATCACCGTAAGCTGCATAGCTCACTGCCATGGA
**************************************************************************************........................(((((.(((((........))))))))))....************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body		 V041
embryo
 V056
head
......................................................................................TGGTTTAGATTTTATTTAGCTTTGAGG.......................................................................................................................................... 27 0 20 1.70 34 0 32 0 2 0
............................................................................ACAGCTCAGCTGGTTTAGA............................................................................................................................................................ 19 3 20 0.80 16 16 0 0 0 0
.............................................................................TAGCTCAGCTGGTTTAGA............................................................................................................................................................ 18 2 20 0.70 14 14 0 0 0 0
......................................................................................TGGTTTAGATTTTATTTAGCTTTGAG........................................................................................................................................... 26 0 20 0.70 14 14 0 0 0 0
......................................................................................TGGTTTAGATTTTATTTAGCTTTGAGGT......................................................................................................................................... 28 0 20 0.45 9 8 1 0 0 0
....................................................................................................................................................................................CATTAATTCACATGTTTGC.................................................... 19 2 4 0.25 1 1 0 0 0 0
................................TAAAGAGAAATAAATGGAGTATAATG................................................................................................................................................................................................. 26 0 20 0.25 5 3 0 2 0 0
..........................................TAAATGGAGTATAATGTAAAAAAATT....................................................................................................................................................................................... 26 0 20 0.15 3 3 0 0 0 0
..........................................................................................................................AAGGGGGGCGCTAACCTGATG............................................................................................................ 21 0 20 0.15 3 3 0 0 0 0
......................................................................................TGCTTTAGATTTTATTTAGCTTTGAGG.......................................................................................................................................... 27 1 20 0.15 3 0 3 0 0 0
..........................................TAAATGGAGTATAATGTAAAAAAAT........................................................................................................................................................................................ 25 0 20 0.15 3 3 0 0 0 0
......................................................................................TCGTTTAGATTTTATTTAGCTTTGAGG.......................................................................................................................................... 27 1 20 0.10 2 0 2 0 0 0
.................................................................................................................TTGAGTGTAAAGGGGGGCGCTA.................................................................................................................... 22 0 20 0.10 2 2 0 0 0 0
.................................AAAGAGAAATAAATGGAGTATAATGT................................................................................................................................................................................................ 26 0 20 0.10 2 2 0 0 0 0
...........................................................................................TAGATTTTATTTAGCTTTGAGG.......................................................................................................................................... 22 0 20 0.10 2 2 0 0 0 0
..........................................................................................................TTTGAGGTTGAGTGTAAAGGGG........................................................................................................................... 22 0 20 0.05 1 0 0 1 0 0
................................TAAAGAGAAATAAATGGAGTATAATGT................................................................................................................................................................................................ 27 0 20 0.05 1 1 0 0 0 0
......................................................................................TGGTTTAGATTTTATTTAGCTTTGA............................................................................................................................................ 25 0 20 0.05 1 1 0 0 0 0
..........................................................TAAAAAAATTTCAAAGATGGAGCTC........................................................................................................................................................................ 25 0 20 0.05 1 0 0 1 0 0
.......................................................................................GTTTTAGATTTTATTTAGCTTTGAGG.......................................................................................................................................... 26 1 20 0.05 1 0 1 0 0 0
..........................................TAAATGGAGTATAATGTAAAAAAA......................................................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0
.................................................................................................................TTGAGTGTAAAGGGGGGCGT...................................................................................................................... 20 1 20 0.05 1 1 0 0 0 0
.................................................................................TCTGCTGGTTTAGATTTTATTTAGC................................................................................................................................................. 25 0 20 0.05 1 1 0 0 0 0
.....................................................................................................TTAGCTTTGAGGTTGAGTGTAAAGGGG........................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0
.....................................................................................................................................TAACCTGATGACGCGCAGTGTATATA............................................................................................ 26 0 20 0.05 1 0 0 1 0 0
.............................................................................GAGCTCAGCTGGTTTAGAG........................................................................................................................................................... 19 2 20 0.05 1 1 0 0 0 0
...............................TTAAAGAGAAATAAATGGAGTATA.................................................................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0
.......................TTTGTATTTTAAAGAGAAATAAAT............................................................................................................................................................................................................ 24 0 20 0.05 1 1 0 0 0 0
................................................................................................................................................................................................................................GTAAGCTGCCAAGTTCACT........ 19 3 20 0.05 1 1 0 0 0 0
................................................................................................TTTATTTAGCTTTGAGGTTGA...................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0
................................TAAAGAGAAATAAATGGAGTATAATGTA............................................................................................................................................................................................... 28 0 20 0.05 1 1 0 0 0 0
....................................GAGAAATAAATGGAGTATAATGT................................................................................................................................................................................................ 23 0 20 0.05 1 0 1 0 0 0
..............................................TGGAGTATAATGTAAAAAAATT....................................................................................................................................................................................... 22 0 20 0.05 1 1 0 0 0 0
......................................................................................TGGTTTAGATTTTATTTAGC................................................................................................................................................. 20 0 20 0.05 1 1 0 0 0 0
...................................................TATAATGTAAAAAAATTTCAAAGATGG............................................................................................................................................................................. 27 0 20 0.05 1 1 0 0 0 0
............................................................................................................TGAGGTTGAGTGTAAAGGGG........................................................................................................................... 20 0 20 0.05 1 0 1 0 0 0
..........................................................TAAAAAAATTTCAAAGATGGAGCTCTT...................................................................................................................................................................... 27 1 20 0.05 1 1 0 0 0 0
................................TAAAGAGAAATAAATGGAGTATAA................................................................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0
...............................................................................................TTTTATTTAGCTTTGAGG.......................................................................................................................................... 18 0 20 0.05 1 1 0 0 0 0
....................................................................................................................................CTAACCTGATGACGCGCAGTG.................................................................................................. 21 0 20 0.05 1 1 0 0 0 0
........................................................................................................................TAAAGGGGGGCGCTAGCCTGA.............................................................................................................. 21 1 20 0.05 1 0 0 0 0 1
........................................................TGTAAAAAAATTTCAAAGATGGAGC.......................................................................................................................................................................... 25 0 20 0.05 1 0 1 0 0 0
...................................................................TTCAAAGATGGAGCTCTGCT.................................................................................................................................................................... 20 0 20 0.05 1 1 0 0 0 0
.........................................................................................TTTAGATTTTATTTAGCTTTGAGG.......................................................................................................................................... 24 0 20 0.05 1 0 1 0 0 0
.......................................................................AAGATGGAGCTCTGCTGGTTTAGAT........................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0
...........................................................................TGGAGCTCTGCTGGTTTAGATTTTATC..................................................................................................................................................... 27 1 20 0.05 1 0 0 1 0 0
......................................................................................................TAGCTTTGAGGTTGAGTGTAAAGG............................................................................................................................. 24 0 20 0.05 1 1 0 0 0 0
......................................................................................TGGTTTAGATTGTATTTAGCTTTGAGG.......................................................................................................................................... 27 1 20 0.05 1 1 0 0 0 0
........................................................TGTAAAAAAATTTCAAAGATGGAGCTC........................................................................................................................................................................ 27 0 20 0.05 1 1 0 0 0 0
..........................GTATTTTAAAGAGAAATAAATGGAGT....................................................................................................................................................................................................... 26 0 20 0.05 1 0 0 1 0 0
.....................................................................................CTGGTTTAGATTTTATTTAGCTTTGAGG.......................................................................................................................................... 28 0 20 0.05 1 1 0 0 0 0
......................................................................................TGGTTGAGATTTTATTTAGCTTTGAGG.......................................................................................................................................... 27 1 20 0.05 1 0 1 0 0 0
..................................................................TTTCAAAGATGGAGCTCTGCTGG.................................................................................................................................................................. 23 0 20 0.05 1 1 0 0 0 0
...................................................................TTCAAAGATGGAGCTCTGCTGGTTT............................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

AATAACAATCTCATCGGTAAGAAAAACATAAAATTTCTCTTTATTTACCTCATATTACATTTTTTTAAAGTTTCTACCTCGAGACGACCAAATCTAAAATAAATCGAAACTCCAACTCACATTTCCCCCCGCGATTGGACTACTGCGCGTCACATATATACAAATATATTTCTCTATAAAGTAATTAAGGGTAGAAACGTCGCTATAAAACGGACGAGTAGTGGCATTCGACGTATCGAGTGACGGTACCT
************************************************************************************************************........................(((((.(((((........))))))))))....************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body		 V049
head
 V056
head
.....CAATCGCATCGCTAAGAATA.................................................................................................................................................................................................................................. 20 3 7 0.14 1 1 0 0 0 0
....................................................................................................................CCACATTTCCCCCCGCGATTGGACTAC............................................................................................................ 27 1 20 0.10 2 0 0 2 0 0
.........................................................................CTACCTCGAGACGACCAAATATA........................................................................................................................................................... 23 1 20 0.10 2 0 2 0 0 0
...................................................................................................................................................................................................................................TAGTCGTTTCGAGTGACGGT.... 20 3 15 0.07 1 0 0 0 1 0
....ATAATCTCATAGGTGAGAAA................................................................................................................................................................................................................................... 20 3 19 0.05 1 0 0 0 0 1
................................................................................................................CAACTCACATTTCCCCCCGCGATT................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0
........................................................................TCTACCTCGAGACGACCAAATCGA........................................................................................................................................................... 24 1 20 0.05 1 0 1 0 0 0
.......................................................................TTCTACCTCGAGACGACCAAATCTA........................................................................................................................................................... 25 0 20 0.05 1 0 0 1 0 0
.........................................................................CTACCTCGAGACGACCAAATAGA........................................................................................................................................................... 23 2 20 0.05 1 0 1 0 0 0
......................................................TTACATTTTTTTAAAGTTTCTAC.............................................................................................................................................................................. 23 0 20 0.05 1 1 0 0 0 0
........................................................................................................................ATTTCCCCCCGCGATTGGACTAC............................................................................................................ 23 0 20 0.05 1 1 0 0 0 0
.......................................................................TTCCACCTCGAGACGACCAAATCTA........................................................................................................................................................... 25 1 20 0.05 1 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6540:15728674-15728924 + dmo_1962 TTATTGTTAGAGTAGCCATT-----C--TTTTTGTATTTTAAAGAGAAATAAATGGAGTATAATGTAAA-AA-----AA-TT-----TCAAAGA-------------------------------------------------TGGAGCTCTGCTGGTTTAGATTTTATT----TAGCTTTG-----AGGTTGAGTGTAAAGGGGGG--CGCTAACCTGATGACGCGCAGTGTATATA---TGT------T--------TATATAAAGAG-----------A----T-----ATTTCATTAATTCCCATCTTTGCAGCGATATTTTGCCTGCTCATCACCGTAAGCTGCATAGCTCACTGCCATGGA
droVir3 scaffold_12855:10106507-10106661 - TGAATTTTTAAAAAGCCATT-----G--TTGTTTTATTTTATGAAGAATTGATAAAAGTCAAATCGACA-AA-----AA-TT-----TTG-AGT-------------------------------------------------TGATAGTTCAAATGTTTTGACAGTATG----GAACATTT------GTAAGAATGTAAAGGGGAG--CGCTAATCCGATGACACGCAGTGTATA-----------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_14906:10741574-10741637 + TCCAAATCTTGCA-GTG-----------ATA------------------TTCTACCT--------------------------------------------------------------------------------------GCTCATCTCAGCAATTTGCA--------------------------------------------------------------------------------------------------------TAGCT-CA--------------------TTGTC--------------------------------------------------------------GTGGT
droWil2 scf2_1100000004963:748697-748861 - TTATTGCTACAATTGCCATT-----G--TTATTTTATTTTAAAAAGAAATGATTGTAGCACAATATAAAAAA-----AA-TC-----TTAAAGC-------------------------------------------------TGGAGCTCTGATGGTTTCGAATTGATT----GAACATTG-----TCAGTGAGCTTAAAGGGGGG--CGCTAACCTGGTGACGCGCAGTGTATATA---TTC------T----------------------------------------------------T---------------------------------------------------------------
dp5 Unknown_group_137:13441-13603 - TCGATTATAAGTA-GTTATT-----G--ATCTTCTTTTTTAAGGAGAACTT-----AAATTAACT---------------------------TTAAATGGTTCAGATAACATGGGAAATCAAAA--------------------------------------------------AATCAATG-----AGAATAA--GTTCAATGGGA--CGCTAATCTGATGACGCCCAGTGTTAGTA---CAT------T--------TTAA----TAGAT-TG--------------------TCATCAATT---------------------------------------------------------------
droPer2 scaffold_162:25895-26057 + TCGATTATAAGTA-GTTATT-----G--ATCTTCTTTTTTAAGGAGAACTT-----AAATTAACT---------------------------TTAAATGGTTCAGATAACATGGGAAATCAAAA--------------------------------------------------AATCAATG-----AGAATAA--GTTCAATGGGA--CGCTAATCTGATGACGCCCAGTGTAAGTA---CAT------T--------TTAA----TAGAT-TG--------------------TCATCAATT---------------------------------------------------------------
droAna3 scaffold_13266:4961655-4961847 + TTATTGTTATACTTATCATTATGTA-CCTTATCTTATTTTGAAGAATATTATTAAAAGTATCGTCAAAA-AA----AAG-TT-----TTATGGC-------------------------------------------------T-TAGCCTTGATAGTTTGGATAATATT----GGACATTA-----CCCGAGAATGATC-AGGGGG--CGCTAATCTGATGACGCGCAGTGTATGTA---CAT------T--------ATTTTGTAAAT-----------A----T-----TTTCCATTTATT---------------------------------------------------------------
droBip1 scf7180000392001:731-916 - TAAGCGTTATATGATTCAAA-----T--TAGTTTAATTTTAAAGTAAATTCATTGCAGTTTATTAAAAAAAT-----TA-TT-----GGATCAA-------------------------------------------------TGTAGCTCAATGTGTTTACCGAAAAAT----AATCACTA-----ATGTTGAGTTAGATGGGGGG--CGCTAACCTGATGACGCGCAGTGTACTTTATAGGT------T--------CG------GAGA---------------T-----GTCTCCTTCACT---------------------------------------------------------------
droKik1 scf7180000302390:170749-170940 + CAACTGCCTTCTA-------------ATATATGTTTTTATTTAGAGAATTAATCGAATTATATTGGATA-AT-----AA-TT-----GTACAGT-------------------------------------------------TCAATCTTTAATAGTTTTGATAATATT----TTACTTCA-----AACGCGAGCACCAAGGGGGG--CGCTAATCTGGTGACGCGCAGTGTATATC---TGC------C--------TT--------GTTTGGCAACAA--ATTTGACTCGCTTCCTTCCTT---------------------------------------------------------------
droFic1 scf7180000454161:42393-42572 + TTATCATTATGTA-------------CCTTATCTTATTTTGAAGAATATTATTAAAAGTATCGTCAAAA-AA-----AG-TT-----TTATGGC-------------------------------------------------TTTAGCCTTGATAGTTTGGATAATATT----GGACATTA-----CCCGAGAATGCTC-AGGGGG--CGCTAATCTGATGACGCGCAGTGTATATA---CAT------T--------CAAAA-------TAGGCAAAAA--AAAT------------ATTTC---------------------------------------------------------------
droEle1 scf7180000491008:2718697-2718767 + TTAATACACCTTCACGAATT-----A--TCTTTT---------GATTATAACCAGAATTATTTTTTAAA-AT-----AA-AATTATTTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGA---------------------------------------------------------------
droRho1 scf7180000780091:391035-391230 - AAATTCCAACTGCGTTCTA-------GTATATGTTTTTATTTAGAGAATTAATCGAATTATACTGGAAA-AT-----AA-TT-----GTACAGT-------------------------------------------------TCAATCTTTAATAGTTTTCATAATATT----TCACTTCA-----TACGAGAACACCAAGGGGGG--CGCTAATCTGGTGACGCGCAGTGTATATT---CTGCATAATT--------CATAC-------AAAGCATAAACTAATT---------T--ATTAA---------------------------------------------------------------
droBia1 scf7180000301746:8239-8312 + ATATTGTTAAAAT-ATTTTG-----A--ATATTATA---------------ATTGAAGTATTATTAAAT-AA--CCAAGGATTTTG-----CTT-------------------------------------------------ATTAAC------------------------------------------------------------------------------------------------------------------------------------------------------TTTTT---------------------------------------------------------------
droTak1 scf7180000415996:111927-112082 + CAACTGCGTTCTA-------------GTATATGTTTTAATTTAGAGCATTAATCGAATTATATTGGAAA-AT-----AA-TT-----GTACAGT-------------------------------------------------TCAATCTTTAATAGTTTTGACAATATT----TCACATCA-----AACGAGAGCACCAAGGGGGG--CGCTAATCTGGTGACGCGCAGTGTAAGTA---TAT---------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409024:8346-8454 - TTGTTGATAAAGTAAATATT-----T--GTTTTATTTAT-------------------------------------------------------------TTCAGTTAATATGGGGAGTGAAAAAATAAAAGATTTTTTACATTTTAATTTTAAATATTTTAATTTTATT----TTATT---------------------------------------------------------------------------------------------------------------------------TT---------------------------------------------------------------
dm3 chr2L:21396623-21396780 - TTCTTCTCTCGAC-CTC------------TTTTTTATTCTCAAAGAG--AGA-GGGAATATCAGTGAAC-AA--A-AAGCATTAAC-----ATTGATAGATTT-------------------------------------------TCCTGCAAT-----GGAAAATACA----GAACTTAAGATGAAACGGAGGCGTACAAGGGGG--CGCTAATCTGATGACGCGCAGTGTATAT----------------------------------------------------------------------------------------------------------------------------------
droSim2 x:19629675-19629836 + TTTCATTTATAGA-ATTATT-----C--AACGTTTG-------------------------AATGAAAA-AT-----AA-AAAT---GTTC-------------AAAAC----------------------------------TCTAGCTTGAGCAGTTTTCAAAATATC----TCAAATCA-----AAGATTTCTGCTC-AAGTGG--CGCCAACTTGATGATGCGCAGTGTATATA---GAT------A--------TA------TAGAT-GGTT----ATAGTT------------GATCA---------------------------------------------------------------
droSec2 scaffold_203:15286-15470 + GCATCCCATGTAA------------------GTTTTTCATTAATAGAATCGATCAAGTTTTGAGGGAAA-AATT---TT-TT-----ACAAAGC-------------------------------------------------TCTCGCTTAAACAGTTTTCTAAATATGTAACTCACATCA-----AAGATTATTGCTC-AAGGGG--CGTTAACCTGGTGACGCGCAGTGTATATA---TAT------AGGAACATATAGA----AAAA---------------T-----GA-TTAAAAAAT---------------------------------------------------------------
droYak3 v2_chrUn_1042:73-189 + AAAGTAACATAAA----------------------------------------TGTGAAATAATATTAA------------AATATTTC---------------AAAAG----------------------------------TGTGGGCGTGGCCGTTTT--------------------TGTCGGTTTGTGGACGTTAGAGTGGGCGTGGCAACATGA-ATTGCGCTGCGTATATA---T-----------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4784:23939954-23940097 + CTATTTTCTATTA-ATTTTT-----G--T-GTGAAA-------------TTTTATATTCTTTTAAGAAAAAA-----AA-ATGTAT-----TTG-------------------------------------------------AAAAGCT-TTTTAGTTCTCCTGATATT----AAGTTTCT-----AAGACGAGCAGCATAGGGTG--TGCTAATGGGTTGTCGCGCAGTGTATGTA---------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
TTATTGTTAGAGTAGCCATT-----C--TTTTTGTATTTTAAAGAGAAATAAATGGAGTATAATGTAAA-AA-----AA-TT-----TCAAAGA-------------------------------------------------TGGAGCTCTGCTGGTTTAGATTTTATT----TAGCTTTG-----AGGTTGAGTGTAAAGGGGGG--CGCTAACCTGATGACGCGCAGTGTATATA---TGT------T--------TATATAAAGAG-----------A----T-----ATTTCATTAATTCCCATCTTTGCAGCGATATTTTGCCTGCTCATCACCGTAAGCTGCATAGCTCACTGCCATGGASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................................................................................................................TGGTTTAGATTTTATT----TAGCTTTG-----AGG.................................................................................................................................................................................27201.70340200320
..........................................................................................................................................................TGGTTTAGATTTTATT----TAGCTTTG-----AG..................................................................................................................................................................................26200.70141400000
..........................................................................................................................................................TGGTTTAGATTTTATT----TAGCTTTG-----AGGT................................................................................................................................................................................28200.459800010
.......................................TAAAGAGAAATAAATGGAGTATAATG..............................................................................................................................................................................................................................................................................................................26200.255300002
.................................................TAAATGGAGTATAATGTAAA-AA-----AA-TT-----........................................................................................................................................................................................................................................................................................26200.153300000
.......................................................................................................................................................................................................AAGGGGGG--CGCTAACCTGATG.................................................................................................................................................21200.153300000
.................................................TAAATGGAGTATAATGTAAA-AA-----AA-T..............................................................................................................................................................................................................................................................................................25200.153300000
..............................................................................................................................................................................................TTGAGTGTAAAGGGGGG--CGCTA.........................................................................................................................................................22200.102200000
........................................AAAGAGAAATAAATGGAGTATAATGT.............................................................................................................................................................................................................................................................................................................26200.102200000
...............................................................................................................................................................TAGATTTTATT----TAGCTTTG-----AGG.................................................................................................................................................................................22200.102200000
..................................................................................................................................................................................TTTG-----AGGTTGAGTGTAAAGGGG..................................................................................................................................................................22200.051000001
.......................................TAAAGAGAAATAAATGGAGTATAATGT.............................................................................................................................................................................................................................................................................................................27200.051100000
..........................................................................................................................................................TGGTTTAGATTTTATT----TAGCTTTG-----A...................................................................................................................................................................................25200.051100000
.................................................................TAAA-AA-----AA-TT-----TCAAAGA-------------------------------------------------TGGAGCTC........................................................................................................................................................................................................................25200.051000001
.................................................TAAATGGAGTATAATGTAAA-AA-----AA-...............................................................................................................................................................................................................................................................................................24200.051100000
..............................................................................................................................................................................................TTGAGTGTAAAGGGGGG--CGT...........................................................................................................................................................20200.051100000
.....................................................................................................................................................TCTGCTGGTTTAGATTTTATT----TAGC.............................................................................................................................................................................................25200.051100000
.........................................................................................................................................................................T----TAGCTTTG-----AGGTTGAGTGTAAAGGGG..................................................................................................................................................................27200.051100000
....................................................................................................................................................................................................................TAACCTGATGACGCGCAGTGTATATA---..............................................................................................................................26200.051000001
......................................TTAAAGAGAAATAAATGGAGTATA.................................................................................................................................................................................................................................................................................................................24200.051100000
..............................TTTGTATTTTAAAGAGAAATAAAT.........................................................................................................................................................................................................................................................................................................................24200.051100000
....................................................................................................................................................................TTTATT----TAGCTTTG-----AGGTTGA.............................................................................................................................................................................21200.051100000
.......................................TAAAGAGAAATAAATGGAGTATAATGTA............................................................................................................................................................................................................................................................................................................28200.051100000
...........................................GAGAAATAAATGGAGTATAATGT.............................................................................................................................................................................................................................................................................................................23200.051000010
.....................................................TGGAGTATAATGTAAA-AA-----AA-TT-----........................................................................................................................................................................................................................................................................................22200.051100000
..........................................................................................................................................................TGGTTTAGATTTTATT----TAGC.............................................................................................................................................................................................20200.051100000
..........................................................TATAATGTAAA-AA-----AA-TT-----TCAAAGA-------------------------------------------------TGG.............................................................................................................................................................................................................................27200.051100000
....................................................................................................................................................................................TG-----AGGTTGAGTGTAAAGGGG..................................................................................................................................................................20200.051000010
.................................................................TAAA-AA-----AA-TT-----TCAAAGA-------------------------------------------------TGGAGCTCTT......................................................................................................................................................................................................................27200.051100000
.......................................TAAAGAGAAATAAATGGAGTATAA................................................................................................................................................................................................................................................................................................................24200.051100000
...................................................................................................................................................................TTTTATT----TAGCTTTG-----AGG.................................................................................................................................................................................18200.051100000
...................................................................................................................................................................................................................CTAACCTGATGACGCGCAGTG.......................................................................................................................................21200.051100000
...............................................................TGTAAA-AA-----AA-TT-----TCAAAGA-------------------------------------------------TGGAGC..........................................................................................................................................................................................................................25200.051000010
.................................................................................T-----TCAAAGA-------------------------------------------------TGGAGCTCTGCT....................................................................................................................................................................................................................20200.051100000
.............................................................................................................................................................TTTAGATTTTATT----TAGCTTTG-----AGG.................................................................................................................................................................................24200.051000010
..........................................................................................AAGA-------------------------------------------------TGGAGCTCTGCTGGTTTAGAT...........................................................................................................................................................................................................25200.051100000
...............................................................................................................................................TGGAGCTCTGCTGGTTTAGATTTTATC----.................................................................................................................................................................................................27200.051000001
..............................................................................................................................................................................TAGCTTTG-----AGGTTGAGTGTAAAGG....................................................................................................................................................................24200.051100000
...............................................................TGTAAA-AA-----AA-TT-----TCAAAGA-------------------------------------------------TGGAGCTC........................................................................................................................................................................................................................27200.051100000
.................................GTATTTTAAAGAGAAATAAATGGAGT....................................................................................................................................................................................................................................................................................................................26200.051000001
.........................................................................................................................................................CTGGTTTAGATTTTATT----TAGCTTTG-----AGG.................................................................................................................................................................................28200.051100000
................................................................................TT-----TCAAAGA-------------------------------------------------TGGAGCTCTGCTGG..................................................................................................................................................................................................................23200.051100000
.................................................................................T-----TCAAAGA-------------------------------------------------TGGAGCTCTGCTGGTTT...............................................................................................................................................................................................................25200.051100000
droVir3
TGAATTTTTAAAAAGCCATT-----G--TTGTTTTATTTTATGAAGAATTGATAAAAGTCAAATCGACA-AA-----AA-TT-----TTG-AGT-------------------------------------------------TGATAGTTCAAATGTTTTGACAGTATG----GAACATTT------GTAAGAATGTAAAGGGGAG--CGCTAATCCGATGACACGCAGTGTATA-----------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droGri2
TCCAAATCTTGCA-GTG-----------ATA------------------TTCTACCT--------------------------------------------------------------------------------------GCTCATCTCAGCAATTTGCA--------------------------------------------------------------------------------------------------------TAGCT-CA--------------------TTGTC--------------------------------------------------------------GTGGTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TTATTGCTACAATTGCCATT-----G--TTATTTTATTTTAAAAAGAAATGATTGTAGCACAATATAAAAAA-----AA-TC-----TTAAAGC-------------------------------------------------TGGAGCTCTGATGGTTTCGAATTGATT----GAACATTG-----TCAGTGAGCTTAAAGGGGGG--CGCTAACCTGGTGACGCGCAGTGTATATA---TTC------T----------------------------------------------------T---------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............................................................................................................................................................TTCGAATTGATT----GAACATTG-----TCA.................................................................................................................................................................................2330.33101000
........................................................................................................................................................................TT----GAACATTG-----TCAGTGAGCTTAAAGG....................................................................................................................................................................2630.33100010
.....................................................................................................................................................................TGATT----GAACATTG-----TCAGTGAGCT..........................................................................................................................................................................2330.33100010
.........................................................................................................................................................ATGGTTTCGAATTGATT----GAACATTG-----T...................................................................................................................................................................................2630.33101000
..............GCCATT-----G--TTATTTTATTTTAAAAAGAA...............................................................................................................................................................................................................................................................................................................................2730.33101000
..................................................................................................................................................................AATTGATT----GAACATTG-----TCAGTGAGC...........................................................................................................................................................................2530.33101000
dp5
TCGATTATAAGTA-GTTATT-----G--ATCTTCTTTTTTAAGGAGAACTT-----AAATTAACT---------------------------TTAAATGGTTCAGATAACATGGGAAATCAAAA--------------------------------------------------AATCAATG-----AGAATAA--GTTCAATGGGA--CGCTAATCTGATGACGCCCAGTGTTAGTA---CAT------T--------TTAA----TAGAT-TG--------------------TCATCAATT---------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................................................................................................................................................................GA--CGCTAATCTGATGACGCCC...........................................................................................................................................2111.0010100000000
.............................................................................................................................................................................................................................................A---CAT------T--------TTAA----TAGAT-TG--------------------TCATC...................................................................2111.0010100000000
droPer2
TCGATTATAAGTA-GTTATT-----G--ATCTTCTTTTTTAAGGAGAACTT-----AAATTAACT---------------------------TTAAATGGTTCAGATAACATGGGAAATCAAAA--------------------------------------------------AATCAATG-----AGAATAA--GTTCAATGGGA--CGCTAATCTGATGACGCCCAGTGTAAGTA---CAT------T--------TTAA----TAGAT-TG--------------------TCATCAATT---------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
TTATTGTTATACTTATCATTATGTA-CCTTATCTTATTTTGAAGAATATTATTAAAAGTATCGTCAAAA-AA----AAG-TT-----TTATGGC-------------------------------------------------T-TAGCCTTGATAGTTTGGATAATATT----GGACATTA-----CCCGAGAATGATC-AGGGGG--CGCTAATCTGATGACGCGCAGTGTATGTA---CAT------T--------ATTTTGTAAAT-----------A----T-----TTTCCATTTATT---------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................................................................................................................................................................................................................ATCTGATGACGCGCAGTGTATGTA---C.............................................................................................................................2512.002110000
........................................................................................................................................................GATAGTTTGGATAATATT----GGACATT..........................................................................................................................................................................................2581.6313760000
......................................................................................................................................................................................................................ATCTGATGACGCGCAGTGTATGTA---CAA------.....................................................................................................................2711.001100000
......................................................................................................................................................................................................................ATCTGATGACGCGCAGTGTATGTA---CAT------T--------............................................................................................................2811.001100000
......................................................................................................................................................................................................................ATCTGATGACGCGCAGTGTATGTA---CA............................................................................................................................2611.001100000
........................................................................................................................................................GATAGTTTGGATAATATT----GGACAT...........................................................................................................................................................................................2480.756060000
......................................................................................................................................................................................................................ATCTGATGACGCGCAGTGTATGTA---..............................................................................................................................2420.501010000
........ATACTTATCATTATGTA-CCTTATC..............................................................................................................................................................................................................................................................................................................................................2460.503210000
.........................................................................................................................................................ATAGTTTGGATAATATT----GGACATT..........................................................................................................................................................................................2480.383300000
.........................................................................................................................................................ATAGTTTGGATAATATT----GGACATTA-----CC..................................................................................................................................................................................2780.383120000
........ATACTTATCATTATGTA-CCTTATCT.............................................................................................................................................................................................................................................................................................................................................2560.332110000
.............................................................................................................................................................................................................GG--CGCTAATCTGATGACGC.............................................................................................................................................19200.306000006
......................................................................................................................................................................................................................ATCTGATGACGCGCAGTGTATGT..................................................................................................................................2340.251100000
....................................................................................................................................................................................TA-----CCCGAGAATGATC-AGGGGG--C.............................................................................................................................................................2280.252020000
........................................................................................................................................................GATAGTTTGGATAATATT----GGACATTA-----CC..................................................................................................................................................................................2880.252200000
.....GTTATACTTATCATTATGTA-CCTTATCT.............................................................................................................................................................................................................................................................................................................................................2860.171100000
......................................................................................................................................................................................................................ATCTGATGACGCGCAGTGTATG...................................................................................................................................2260.171100000
........ATACTTATCATTATGTA-CCT..................................................................................................................................................................................................................................................................................................................................................2060.171010000
....................................................................................................................................................................................................................TAATCTGATGACGCGCAGTGTATG...................................................................................................................................2460.171100000
....TGTTATACTTATCATTATGTA-CC...................................................................................................................................................................................................................................................................................................................................................2360.171010000
.........TACTTATCATTATGTA-CCTTATCTTATTT........................................................................................................................................................................................................................................................................................................................................2960.171100000
...........CTTATCATTATGTA-CCTTATCTTATTTT.......................................................................................................................................................................................................................................................................................................................................2860.171010000
.........................................................................................ATGGC-------------------------------------------------T-TAGCCTTGATAGTTTGGA............................................................................................................................................................................................................2480.131010000
.............................................................................................................................................................................................CGAGAATGATC-AGGGGG--CGCTAATC......................................................................................................................................................2580.131010000
.........................................................................................................................................................ATAGTTTGGATAATATT----GGACATTA-----CCC.................................................................................................................................................................................2880.131100000
....................................................................................................................................................................................TA-----CCCGAGAATGATC-AGGGG.................................................................................................................................................................2080.131010000
..............................................................................................................................................................................................GAGAATGATC-AGGGGG--CGCTAATCC.....................................................................................................................................................2580.131010000
...................................................................................................................................................................................TTA-----CCCGAGAATGATC-AGGGGG--CGCT..........................................................................................................................................................2680.131100000
...............................................................TCAAAA-AA----AAG-TT-----TTATGGC-------------------------------------------------T-TAGCC.........................................................................................................................................................................................................................2680.131010000
................................................................................................................................................................................................GAATGATC-AGGGGG--CGCTAATCTGA...................................................................................................................................................2580.131100000
.........................................................................................ATGGC-------------------------------------------------T-TAGCCTTGATAGTTTGGATAA.........................................................................................................................................................................................................2780.131100000
...............................................................................................................................................................................GACATTA-----CCCGAGAATGATC-AGGGG.................................................................................................................................................................2580.131010000
...................................................TTAAAAGTATCGTCAAAA-AA----AAG-TT-----T.......................................................................................................................................................................................................................................................................................2680.131100000
........................................................AGTATCGTCAAAA-AA----AAG-TT-----TTATGGC-------------------------------------------------................................................................................................................................................................................................................................2780.131010000
........................................................................................................................................................................TT----GGACATTA-----CCCGAGAATGATC-AGGG..................................................................................................................................................................2780.131100000
.....................................................................................................................................................................................................ATC-AGGGGG--CGCTAATCTGATG.................................................................................................................................................2280.131010000
...........................................................................................................................................................................................CCCGAGAATGATC-AGGGGG--CGCTA.........................................................................................................................................................2480.131100000
........................................................................................TATGGC-------------------------------------------------T-TAGCCTTGATAGTTTGGA............................................................................................................................................................................................................2580.131100000
.................................................................................................................................................................GATAATATT----GGACATTA-----CCCGAGAAT...........................................................................................................................................................................2680.131100000
............................................AATATTATTAAAAGTATCGTCAAAA-.........................................................................................................................................................................................................................................................................................................2580.131010000
....................................................................................................................................................................................TA-----CCCGAGAATGATC-AGGGGG--CGCTA.........................................................................................................................................................2680.131100000
...........................................................ATCGTCAAAA-AA----AAG-TT-----TTATGGC-------------------------------------------------................................................................................................................................................................................................................................2480.131001000
........................................................................................................................................................GATAGTTTGGATAATATT----GGACATC..........................................................................................................................................................................................2580.131010000
....................................................................A-AA----AAG-TT-----TTATGGC-------------------------------------------------T-TAGCCT........................................................................................................................................................................................................................2280.131010000
.............................................................................AG-TT-----TTATGGC-------------------------------------------------T-TAGCCTTGA.....................................................................................................................................................................................................................2180.131000001
...............................................................................................................................................................TGGATAATATT----GGACATTA-----CCCGAGA.............................................................................................................................................................................2680.131010000
........................................................................................................................................................GATAGTTTGGATAATATT----GGACATTA-----CCC.................................................................................................................................................................................2980.131100000
.................................................................................................................................................................................CATTA-----CCCGAGAATGATC-AGGGG.................................................................................................................................................................2380.131010000
.............................................................................................................................................................................................CGAGAATGATC-AGGGGG--CGCTA.........................................................................................................................................................2280.131010000
..............................................................................................................................................................................................GAGAATGATC-AGGGGG--CGCTA.........................................................................................................................................................2180.131001000
.......................................................................................................................................................TGATAGTTTGGATAATATT----GGACATT..........................................................................................................................................................................................2680.131100000
........................................................................................................................................................GATAGTTTGGATAATATT----GGACATTA-----C...................................................................................................................................................................................2780.131100000
...........................................................................................................................................................................................................GGGG--CGCTAATCTGATGACGC.............................................................................................................................................21160.061000001
droBip1
TAAGCGTTATATGATTCAAA-----T--TAGTTTAATTTTAAAGTAAATTCATTGCAGTTTATTAAAAAAAT-----TA-TT-----GGATCAA-------------------------------------------------TGTAGCTCAATGTGTTTACCGAAAAAT----AATCACTA-----ATGTTGAGTTAGATGGGGGG--CGCTAACCTGATGACGCGCAGTGTACTTTATAGGT------T--------CG------GAGA---------------T-----GTCTCCTTCACT---------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
CAACTGCCTTCTA-------------ATATATGTTTTTATTTAGAGAATTAATCGAATTATATTGGATA-AT-----AA-TT-----GTACAGT-------------------------------------------------TCAATCTTTAATAGTTTTGATAATATT----TTACTTCA-----AACGCGAGCACCAAGGGGGG--CGCTAATCTGGTGACGCGCAGTGTATATC---TGC------C--------TT--------GTTTGGCAACAA--ATTTGACTCGCTTCCTTCCTT---------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
TTATCATTATGTA-------------CCTTATCTTATTTTGAAGAATATTATTAAAAGTATCGTCAAAA-AA-----AG-TT-----TTATGGC-------------------------------------------------TTTAGCCTTGATAGTTTGGATAATATT----GGACATTA-----CCCGAGAATGCTC-AGGGGG--CGCTAATCTGATGACGCGCAGTGTATATA---CAT------T--------CAAAA-------TAGGCAAAAA--AAAT------------ATTTC---------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TTAATACACCTTCACGAATT-----A--TCTTTT---------GATTATAACCAGAATTATTTTTTAAA-AT-----AA-AATTATTTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGA---------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
AAATTCCAACTGCGTTCTA-------GTATATGTTTTTATTTAGAGAATTAATCGAATTATACTGGAAA-AT-----AA-TT-----GTACAGT-------------------------------------------------TCAATCTTTAATAGTTTTCATAATATT----TCACTTCA-----TACGAGAACACCAAGGGGGG--CGCTAATCTGGTGACGCGCAGTGTATATT---CTGCATAATT--------CATAC-------AAAGCATAAACTAATT---------T--ATTAA---------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
ATATTGTTAAAAT-ATTTTG-----A--ATATTATA---------------ATTGAAGTATTATTAAAT-AA--CCAAGGATTTTG-----CTT-------------------------------------------------ATTAAC------------------------------------------------------------------------------------------------------------------------------------------------------TTTTT---------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
CAACTGCGTTCTA-------------GTATATGTTTTAATTTAGAGCATTAATCGAATTATATTGGAAA-AT-----AA-TT-----GTACAGT-------------------------------------------------TCAATCTTTAATAGTTTTGACAATATT----TCACATCA-----AACGAGAGCACCAAGGGGGG--CGCTAATCTGGTGACGCGCAGTGTAAGTA---TAT---------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
TTGTTGATAAAGTAAATATT-----T--GTTTTATTTAT-------------------------------------------------------------TTCAGTTAATATGGGGAGTGAAAAAATAAAAGATTTTTTACATTTTAATTTTAAATATTTTAATTTTATT----TTATT---------------------------------------------------------------------------------------------------------------------------TT---------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
TTCTTCTCTCGAC-CTC------------TTTTTTATTCTCAAAGAG--AGA-GGGAATATCAGTGAAC-AA--A-AAGCATTAAC-----ATTGATAGATTT-------------------------------------------TCCTGCAAT-----GGAAAATACA----GAACTTAAGATGAAACGGAGGCGTACAAGGGGG--CGCTAATCTGATGACGCGCAGTGTATAT----------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................................................................................................................................................TACA----GAACTTAAGATGAAACGGAGG............................................................................................................................................................................2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003100000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................TACA----GAACTTAAGATGAAACGGAGGCG..........................................................................................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000010000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................AAATACA----GAACTTAAGATGAAACGG...............................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................AAATACA----GAACTTAAGATGAAACGGA..............................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................ATATCAGTGAAC-AA--A-AAG................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
................................TTTATTCTCAAAGAG--AGA-GGGAATA...................................................................................................................................................................................................................................................................................................................2521.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................AATATCAGTGAAC-AA--A-AAGCATT............................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................TATCAGTGAAC-AA--A-AAGCATTAAC-----A...................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................GATGAAACGGAGGCGTACAAGGGG.................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.TCTTCTCTCGAC-CTC------------TTTTTTATTCTC......................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................TCCTGCAAT-----GGAAAATACA----GA...............................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................ACTTAAGATGAAACGGAGGCGTACA......................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
......................................................................................................................................................................TACA----GAACTTAAGATGAAACGGA..............................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................AATACA----GAACTTAAGATGAAACGGA..............................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.......................................................................................................................................................CAAT-----GGAAAATACA----GAACTTAAGATGA....................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................TTCTCAAAGAG--AGA-GGGAATATCAGT..............................................................................................................................................................................................................................................................................................................2621.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................TACAAGGGGG--CGCTAATCTGATGACGC.............................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................ACAAGGGGG--CGCTAATCTGATGACGC.............................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
....................................TTCTCAAAGAG--AGA-GGGAATATCAGTGA............................................................................................................................................................................................................................................................................................................2820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.................................TTATTCTCAAAGAG--AGA-GGGAATA...................................................................................................................................................................................................................................................................................................................2420.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................TTTTTATTCTCAAAGAG--AGA-GGGAATA...................................................................................................................................................................................................................................................................................................................2720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................TATTCTCAAAGAG--AGA-GGGAATATC.................................................................................................................................................................................................................................................................................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................TCTCAAAGAG--AGA-GGGAATATCAGT..............................................................................................................................................................................................................................................................................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................AG--AGA-GGGAATATCAGTGAAC-.........................................................................................................................................................................................................................................................................................................2170.4330000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
..................................................................................................................................................................................................................GCTAATCTGATGACGCGCAGTGTATA...................................................................................................................................2650.4020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..................................................................................................................................................................................................................GCTAATCTGATGACGCGCAGTGTATAT----------------------------------------------------------------------------------------------------------------------------------2730.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....................................................................................................................................................................................................................TAATCTGATGACGCGCAGTGTATAT----------------------------------------------------------------------------------------------------------------------------------2530.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................CAAAGAG--AGA-GGGAATATCAGTGAAC-A........................................................................................................................................................................................................................................................................................................2760.3320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000
.........................................................................................................................................................................................................................TGATGACGCGCAGTGTATAT----------------------------------------------------------------------------------------------------------------------------------2030.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.............................TTTTTTATTCTCAAAGAG--AGA-..........................................................................................................................................................................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..................................................GA-GGGAATATCAGTGAAC-AA--A-A..................................................................................................................................................................................................................................................................................................2280.2520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000
...................................................A-GGGAATATCAGTGAAC-AA--A-A..................................................................................................................................................................................................................................................................................................2180.2520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000010000000000000000000000000000000000
.............................................AG--AGA-GGGAATATCAGTGAAA-.........................................................................................................................................................................................................................................................................................................2180.2520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000100
....................................................................................................................................................................................................................TAATCTGATGACGCGCAGTGT......................................................................................................................................21100.2020000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................CTAATCTGATGACGCGCAGTGTATA...................................................................................................................................2550.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................GG--CGCTAATCTGATGACGCGC...........................................................................................................................................21100.2020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
...........................................AGAG--AGA-GGGAATATCAGTGA............................................................................................................................................................................................................................................................................................................2160.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
..........................................AAGAG--AGA-GGGAATATCAGTT.............................................................................................................................................................................................................................................................................................................2160.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
...............TC------------TTTTTTATTCTCAAAGTA--G.............................................................................................................................................................................................................................................................................................................................2160.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
.......................................TCAAAGAG--AGA-GGGAATATCAGTGAAC-.........................................................................................................................................................................................................................................................................................................2760.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................G--AGA-GGGAATATCAGTGAAC-A........................................................................................................................................................................................................................................................................................................2170.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................GA-GGGAATATCAGTGAAC-AA--.....................................................................................................................................................................................................................................................................................................2080.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.................................................AGA-GGGAATATCAGTGAAC-AA--.....................................................................................................................................................................................................................................................................................................2180.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GA-GGGAATATCAGTGAAC-A........................................................................................................................................................................................................................................................................................................1980.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................GGGGG--CGCTAATCTGATGACG..............................................................................................................................................2180.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................AG--AGA-GGGAATATCAGTG.............................................................................................................................................................................................................................................................................................................1880.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................GGGGG--CGCTAATCTGATGACGC.............................................................................................................................................2280.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................TGATGACGCGCAGTGTATA...................................................................................................................................1980.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..........................................AAGAG--AGA-GGGAATATCA................................................................................................................................................................................................................................................................................................................1880.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.................................................................................................................................................................................................................CGCTAATCTGATGACGCGCAGT........................................................................................................................................2280.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................GGGG--CGCTAATCTGATGAC...............................................................................................................................................1990.1110000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................TAATCTGATGACGCGCAGTGTA.....................................................................................................................................22100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................CTAATCTGATGACGCGCAGTG.......................................................................................................................................21100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................G--CGCTAATCTGATGACGCGCA..........................................................................................................................................21100.1010000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................GG--CGCTAATCTGATGACG..............................................................................................................................................18130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TTTCATTTATAGA-ATTATT-----C--AACGTTTG-------------------------AATGAAAA-AT-----AA-AAAT---GTTC-------------AAAAC----------------------------------TCTAGCTTGAGCAGTTTTCAAAATATC----TCAAATCA-----AAGATTTCTGCTC-AAGTGG--CGCCAACTTGATGATGCGCAGTGTATATA---GAT------A--------TA------TAGAT-GGTT----ATAGTT------------GATCA---------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................................................TGG--CGCCAACTTGATGATGCGCA..........................................................................................................................................2311.00100000000001000000
...................................................................................T---GTTC-------------AAAAC----------------------------------TCTAGCTTGAGCAGT.................................................................................................................................................................................................................2511.00100000000001000000
..........................................................................................................................................................................................................................GATGATGCGCAGTGTATATA---GAT------A--------............................................................................................................2411.00100000000001000000
............................................................................................................................................................................................................................TGATGCGCAGTGTATATA---GAT------A--------............................................................................................................2211.00100000000001000000
droSec2
GCATCCCATGTAA------------------GTTTTTCATTAATAGAATCGATCAAGTTTTGAGGGAAA-AATT---TT-TT-----ACAAAGC-------------------------------------------------TCTCGCTTAAACAGTTTTCTAAATATGTAACTCACATCA-----AAGATTATTGCTC-AAGGGG--CGTTAACCTGGTGACGCGCAGTGTATATA---TAT------AGGAACATATAGA----AAAA---------------T-----GA-TTAAAAAAT---------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
AAAGTAACATAAA----------------------------------------TGTGAAATAATATTAA------------AATATTTC---------------AAAAG----------------------------------TGTGGGCGTGGCCGTTTT--------------------TGTCGGTTTGTGGACGTTAGAGTGGGCGTGGCAACATGA-ATTGCGCTGCGTATATA---T-----------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................................................................................................................................................................................CGTTAGAGTGGGCGTGGCAACATGA-AT................................................................................................................................................27200.05100100000000
.................................................................................................................................................................................................GACGTTAGAGTGGGCGTGG...........................................................................................................................................................19200.05101000000000
................................................................................................................................................................................................GGACGTTAGAGTGGGCGTGGCAAC.......................................................................................................................................................24200.05100100000000
..................................................................................................................................................................................................ACGTTAGAGTGGGCGTGG...........................................................................................................................................................18200.05100100000000
.....................................................................................TTTC---------------AAAAG----------------------------------TGTGGGCGTGGCCGTT................................................................................................................................................................................................................25200.05101000000000
...................................................................................TATTTC---------------AAAAG----------------------------------TGTGGGCGT.......................................................................................................................................................................................................................20200.05100100000000
...............................................................................................................................................................................................TGGACGTTAGAGTGGGCGTGG...........................................................................................................................................................21200.05101000000000
...................................................................................TATTTC---------------AAAAG----------------------------------TGTGGGCGTGGC....................................................................................................................................................................................................................23200.05100100000000
...........................................................................................................................................................................................TTTGTGGACGTTAGAGTGGGCGTGGC..........................................................................................................................................................26200.05101000000000
....................................................................................................................................................................................................GTTAGAGTGGGCGTGGCAACATGA-ATT...............................................................................................................................................27200.05101000000000
..................................................................................................................................................................................................ACGTTAGAGTGGGCGTGGCAACATGA-AT................................................................................................................................................28200.05100000010000
.............................................................................................................................................................................................TGTGGACGTTAGAGTGGGCGTGG...........................................................................................................................................................23200.05101000000000
......................................................................................TTC---------------AAAAG----------------------------------TGTGGGCGTGGCC...................................................................................................................................................................................................................21200.05100000010000
droEre2
CTATTTTCTATTA-ATTTTT-----G--T-GTGAAA-------------TTTTATATTCTTTTAAGAAAAAA-----AA-ATGTAT-----TTG-------------------------------------------------AAAAGCT-TTTTAGTTCTCCTGATATT----AAGTTTCT-----AAGACGAGCAGCATAGGGTG--TGCTAATGGGTTGTCGCGCAGTGTATGTA---------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................................................................................................................................AAGACGAGCAGCATAGGGTG--TGC...........................................................................................................................................................2395.004500000045

Generated: 05/18/2015 at 01:41 AM