ID:

dmo_1961

 Coordinate:

scaffold_6540:15727163-15727313 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-2.5 -1.8

Flybase annnotation

CDS [Dmoj\GI24680-cds]; exon [dmoj_GLEANR_9807:1]; intron [Dmoj\GI24680-in]

No Repeatable elements found

mature
  1. scaffold_1796:2375-2401 +
  2. scaffold_4101:1370-1396 +
  3. scaffold_6308:1640019-1640045 +
  4. scaffold_6359:1152913-1152939 +
  5. scaffold_6400:3603-3629 +
  6. scaffold_6473:2105279-2105305 +
  7. scaffold_6473:4318055-4318081 +
  8. scaffold_6473:7054337-7054363 +
  9. scaffold_6473:11122306-11122332 +
  10. scaffold_6473:12099920-12099946 +
  11. scaffold_6482:841948-841974 +
  12. scaffold_6496:5076560-5076586 +
  13. scaffold_6496:17231029-17231055 +
  14. scaffold_6496:25503310-25503336 +
  15. scaffold_6500:3086896-3086922 +
  16. scaffold_6500:20554160-20554186 +
  17. scaffold_6500:29609104-29609130 +
  18. scaffold_6540:1242729-1242755 +
  19. dmo_1961  scaffold_6540:15727236-15727262 +
  20. scaffold_6680:23726108-23726134 +
  21. scaffold_6482:395473-395499 +
  22. scaffold_6482:2298566-2298592 +
  23. scaffold_6482:2478511-2478537 +
  24. scaffold_6498:3065718-3065744 +
  25. scaffold_6500:29908334-29908360 +
  26. scaffold_6540:501133-501159 +
  27. scaffold_6540:6551241-6551267 +
star
  1. scaffold_1796:2339-2364 +
  2. scaffold_6308:1639983-1640008 +
  3. scaffold_6400:3567-3592 +
  4. scaffold_6473:2105243-2105268 +
  5. scaffold_6473:4318019-4318044 +
  6. scaffold_6473:7054301-7054326 +
  7. scaffold_6473:12099884-12099909 +
  8. scaffold_6482:841912-841937 +
  9. scaffold_6496:4399479-4399504 +
  10. scaffold_6496:5076524-5076549 +
  11. scaffold_6496:17230993-17231018 +
  12. scaffold_6496:25503274-25503299 +
  13. scaffold_6500:3086860-3086885 +
  14. scaffold_6500:20554124-20554149 +
  15. scaffold_6500:28189684-28189709 +
  16. scaffold_6500:28286647-28286672 +
  17. scaffold_6500:29609068-29609093 +
  18. scaffold_6540:6551205-6551230 +
  19. dmo_1961  scaffold_6540:15727200-15727225 +
  20. scaffold_6680:23726072-23726097 +
  21. scaffold_6214:503-528 +
  22. scaffold_6359:1152877-1152902 +
  23. scaffold_6482:2478475-2478500 +

Sense Strand Reads

----------------------------######################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ATATTTAAAGCAACAATCTGAAGAAGCAATGAGTGGTTCCACTCAGTGGGGTAAGCATTGCGCACTCACTATATATACACTTCGCGTCATCAGGTTAGCGCCCCCCCTTACACTCATTTTCTTTTACGTTTTTCTCTTTGCCTATTGCACACAACTTCTTGGTTTTTTTTTTATTTCATTATCATCATATGAGATGTCTCTCATACCAAAAAAAAGCGCGAGTGAAAACCCGTTATGTTTTATTTTCTATC
***************************************************************************************((..((((............................................))))..))...***************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body		 V041
embryo
 V049
head
...........................................................................................................................TTACGTTTTTCTCTTTGCCTATTGCAC..................................................................................................... 27 0 20 2.90 58 58 0 0 0 0
...........................................................................................................................TTACGTTTTTCTCTTTGCCTATTGCA...................................................................................................... 26 0 20 1.95 39 39 0 0 0 0
..............................TAGTGGTTCCAGTCATTGGG......................................................................................................................................................................................................... 20 3 1 1.00 1 1 0 0 0 0
...........................................................................................................................TTACGTTTTTCTCTTTGCCTATTGC....................................................................................................... 25 0 20 0.75 15 0 13 0 2 0
...................................................................................................................................................................................TATCATCATATGAGATGTCTCTCATA.............................................. 26 0 20 0.55 11 0 11 0 0 0
.......................................................................................CATCAGGTTAGCGCCCCCCCTTACAC.......................................................................................................................................... 26 0 20 0.45 9 4 3 2 0 0
...........................................................................................................................TGACGTTTTTCTCTTTGCCTATTGCAC..................................................................................................... 27 1 20 0.45 9 0 9 0 0 0
.....................................................................................GTCATCAGGTTAGCGCCCCCCCTTA............................................................................................................................................. 25 0 20 0.30 6 5 0 1 0 0
...........................................................................................................................TTACGTTTTTCTCTTTGCCTATTGCACAC................................................................................................... 29 0 20 0.30 6 0 6 0 0 0
..................................................................................................................................TTTCTCTTTGCCTATTGCACACAAC................................................................................................ 25 0 20 0.25 5 5 0 0 0 0
............................................................................................................................TACGTTTTTCTCTTTGCCTATTGCAC..................................................................................................... 26 0 20 0.25 5 5 0 0 0 0
.......................................................................................CATCAGGTTAGCGCCCCCCCTTACA........................................................................................................................................... 25 0 20 0.15 3 3 0 0 0 0
...........................................................................................................................TTACGTTTTTCTCTTTGCCTATT......................................................................................................... 23 0 20 0.15 3 3 0 0 0 0
...........................................................................................................................TTACGTTTTTCTCTTTGCCTATTGCACA.................................................................................................... 28 0 20 0.15 3 3 0 0 0 0
.........................................................................................TCAGGTTAGCGCCCCCCCTT.............................................................................................................................................. 20 0 20 0.15 3 3 0 0 0 0
............................................................................................................................TACGTTTTTCTCTTTGCCTATTGC....................................................................................................... 24 0 20 0.15 3 3 0 0 0 0
...................................................................................................................................TTCTCTTTGCCTATTGCACACAACTTC............................................................................................. 27 0 20 0.15 3 2 1 0 0 0
...........................................................................................................................TGATGTTTTTCTCTTTGCCTATTGCAC..................................................................................................... 27 2 20 0.10 2 0 2 0 0 0
.......................................................................................CATCAGGTTAGCGCCCCCCCTTA............................................................................................................................................. 23 0 20 0.10 2 2 0 0 0 0
.......................................................................................CATCAGGTTAGCGCCCCCCCTTACACT......................................................................................................................................... 27 0 20 0.10 2 2 0 0 0 0
............................................................................................................................TACGTTTTTCTCTTTGCCTATTGCACAC................................................................................................... 28 0 20 0.10 2 1 1 0 0 0
.......................................................................................CATCAGGTTAGCGCCCCCC................................................................................................................................................. 19 0 20 0.10 2 2 0 0 0 0
.....................................................................................GTCATCAGGTTAGCGCCCCCCCTTAC............................................................................................................................................ 26 0 20 0.10 2 2 0 0 0 0
...........................................................................................................................TGACGTTTTTCTCTTTGCCTATTGC....................................................................................................... 25 1 20 0.05 1 0 1 0 0 0
......................................................................................TCATCAGGTTAGCGCCCCCC................................................................................................................................................. 20 0 20 0.05 1 0 1 0 0 0
......................................................................................TCATCAGGTTAGCGCCCCCCCTTACACC......................................................................................................................................... 28 1 20 0.05 1 1 0 0 0 0
...........................................................................................................................TTACGGTTTTCTCTTTGCCTATTGCAC..................................................................................................... 27 1 20 0.05 1 0 1 0 0 0
...........................................................................................................................TGACGGTTTTCTCTTTGCCTATTGCAC..................................................................................................... 27 2 20 0.05 1 0 1 0 0 0
...............................................................................CTTCGCGTCATCAGGTTAGCG....................................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 1
...................................................................................................................................................................................TTTCATCATATGAGATGTCTCTCATA.............................................. 26 1 20 0.05 1 0 1 0 0 0
...........................................................................................................................TTACTTTTTTCTCTTTGCCTATTGC....................................................................................................... 25 1 20 0.05 1 0 1 0 0 0
.........................................................................................TCAGGTTAGCGCCCCCCCTTACACTC........................................................................................................................................ 26 0 20 0.05 1 1 0 0 0 0
..................................................................................................................................TTTCTCTTTGCCTATTGCACAC................................................................................................... 22 0 20 0.05 1 1 0 0 0 0
...................................................................................................................................TTCTCTTTGCCTATTGCACACAAC................................................................................................ 24 0 20 0.05 1 1 0 0 0 0
...................................................................................................................................TTCTCTTTGCCTATTGCACACAACT............................................................................................... 25 0 20 0.05 1 1 0 0 0 0
..........................................................................................................................TTTACGTTTTTCTCTTTGCCTATTGCA...................................................................................................... 27 0 20 0.05 1 1 0 0 0 0
......................................................................................................................................TCTTTGCCTATTGCACAC................................................................................................... 18 0 20 0.05 1 1 0 0 0 0
...........................................................................................................................TTACGTTTTTCTCTTTGCCTA........................................................................................................... 21 0 20 0.05 1 1 0 0 0 0
...........................................................................................................................TTACGTTTTTCTCTTTGCCTATTGCACC.................................................................................................... 28 1 20 0.05 1 1 0 0 0 0
...................................................................................................................................................................................TATCATCATATGAGATGTCTCTCATACC............................................ 28 0 20 0.05 1 0 1 0 0 0
.................CTGAAGAAGCATTGTATGGT...................................................................................................................................................................................................................... 20 3 20 0.05 1 0 0 1 0 0
.........................................................................................TCAGGTTAGCGCCCCCCCT............................................................................................................................................... 19 0 20 0.05 1 1 0 0 0 0
...........................................................................................................................TGACGTTTTTCTCTTTGCCTATTGCA...................................................................................................... 26 1 20 0.05 1 0 1 0 0 0
...........................................................................................................................TGACGTTTTTCTCTTTGCCTATTGCACA.................................................................................................... 28 1 20 0.05 1 0 1 0 0 0
..............................................................................................................................CGTTTTTCTCTTTGCCTATTG........................................................................................................ 21 0 20 0.05 1 1 0 0 0 0
..............................................................................................TTAGCGCCCCCCCTTACAC.......................................................................................................................................... 19 0 20 0.05 1 1 0 0 0 0
...................................................................................................................................................................................TATCATCATATGAGATGTCTCTCA................................................ 24 0 20 0.05 1 0 0 1 0 0
..................................................................................................................................TTTCTCTTTGCCTATTGCACACAACTT.............................................................................................. 27 0 20 0.05 1 1 0 0 0 0
......................................................................................TCATCAGGTTAGCGCCCCCCCTTAC............................................................................................................................................ 25 0 20 0.05 1 1 0 0 0 0
..................................................................................................................................TTTCTCTTTGCCTATTGCACACAACTTCT............................................................................................ 29 0 20 0.05 1 1 0 0 0 0
.........................................................................................................................TTTTACGTTTTTCTCTTTGCCTATTGCA...................................................................................................... 28 0 20 0.05 1 1 0 0 0 0
...........................................................................................................................CTACGTTTTTCTCTTTGCCTATTGCACAC................................................................................................... 29 1 20 0.05 1 0 1 0 0 0
.............................................................................................................................ACGTTTTTCTCTTTGCCTATTGCAC..................................................................................................... 25 0 20 0.05 1 1 0 0 0 0
......................................................................................................................................................................................................................AGCGCGAGTGAAAACCCGTTATGTTT........... 26 0 20 0.05 1 1 0 0 0 0
.........................................................................................................................TTTTACGTTTTGCTCTTTGCCTATTGC....................................................................................................... 27 1 20 0.05 1 1 0 0 0 0
............................................................................................................................TACTTTTTTCTCTTTGCCTATTGCAC..................................................................................................... 26 1 20 0.05 1 0 1 0 0 0
..................................................................................................................................TTTCTCTTTGCCTATTGCACACAACT............................................................................................... 26 0 20 0.05 1 1 0 0 0 0
...........................................................................TACACTTCGCGTCATCAGGTTAGCGCC..................................................................................................................................................... 27 0 20 0.05 1 0 1 0 0 0
....................................................................................................................................................................................ATCATCATATGAGATGTCTCTCATA.............................................. 25 0 20 0.05 1 0 1 0 0 0
...........................................................................................................................TTACGGTTTTCTCTTTGCCTATTGCACAC................................................................................................... 29 1 20 0.05 1 0 1 0 0 0
...........................................................................................................................TTACCTTTTTCTCTTTGCCTATTGCAC..................................................................................................... 27 1 20 0.05 1 0 0 0 1 0
........AGCCAAAATCTGAAGAAG................................................................................................................................................................................................................................. 18 2 20 0.05 1 0 0 1 0 0
..................................................................................................................................TTTCTCTTTGCCTATTGCACACAACTTC............................................................................................. 28 0 20 0.05 1 0 1 0 0 0
......................................................................................TCATCAGGTTAGCGCCCCCCCTTACAC.......................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0
........................................................................................................................................................................TTTTATTTCATTATCATCATATGAGA......................................................... 26 0 20 0.05 1 0 1 0 0 0
........................................................................................................................................................................................................................CTCGAGTGAAAACCCGTTATGTTTTATT....... 28 1 20 0.05 1 0 1 0 0 0

Anti-sense strand reads

TATAAATTTCGTTGTTAGACTTCTTCGTTACTCACCAAGGTGAGTCACCCCATTCGTAACGCGTGAGTGATATATATGTGAAGCGCAGTAGTCCAATCGCGGGGGGGAATGTGAGTAAAAGAAAATGCAAAAAGAGAAACGGATAACGTGTGTTGAAGAACCAAAAAAAAAATAAAGTAATAGTAGTATACTCTACAGAGAGTATGGTTTTTTTTCGCGCTCACTTTTGGGCAATACAAAATAAAAGATAG
*****************************************************************************************************((..((((............................................))))..))...*************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V110
male body		 M060
embryo
 V056
head
.....................................................................ATATATATGTGAAGCGCAGTAGTCCAAT.......................................................................................................................................................... 28 0 11 0.18 2 1 1 0 0
.....................................................................ATATATATGTGAAGCGCAGTAGTCCA............................................................................................................................................................ 26 0 11 0.09 1 0 1 0 0
.........................................................................................................GGAATGTGAGTAAAAGAAAATGCAAAA....................................................................................................................... 27 0 20 0.05 1 1 0 0 0
...................................................................................................................................................................................................................................TGGGCAATACACAATAAAAGATA. 23 1 20 0.05 1 1 0 0 0
...........................................................................................................................................CGGATAACGTGTGTTGAAGAACCAAA...................................................................................... 26 0 20 0.05 1 1 0 0 0
.........................................................................................................GGAATGTGAGTAAAAGAAAATGCAAAAA...................................................................................................................... 28 0 20 0.05 1 1 0 0 0
...................................................................................................CGGAGGGGAATGGGAGTAA..................................................................................................................................... 19 2 20 0.05 1 0 0 0 1
.................................................................................................................................................................................................................................TTTGGGCAATACAAAATAAAAGATA. 25 0 20 0.05 1 0 0 1 0
.................................................................................................................................................................................................................................TTTGGGCAATACAAAATAAAAGA... 23 0 20 0.05 1 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6540:15727113-15727363 + dmo_1961 ATATTTAAAGCAAC-------AATCTGAAGAAGCAA-------------TGAGTGGTTCCACTCAGTGGGGTAAGCATTGCGCAC-TCACTA--TATATACACTTCGCGTCATCAGGTTAGCGCCCCCCCTTA--CACTCATTTTC-TTTTACGT--TTTTCTCTTTG-----C------C------------TATTGCACACAACTTCTTGGTTTT---T----TTTTTATTTCA-TTA------------------------TCATCA--TATGA--GATGTCTCT----CATACCAAAAAAAAGCGCGAGTGAAAACCCGT-----TATGTTTTATTTTCTATC
droVir3 scaffold_13047:2629307-2629444 - TA--------------------------------------------------------------------------------------------TGAATACGCTGCGCATCATCAGATTAGCCCCTCCCCCCTTACAC-TCGTTTCTTTTTGCAA--AT-ACCTTTTT-----C------C------------TATTGCATGGAACTTCCTCAATTT---T----TTGTTTTTCCA-ATCACAG------CT---------------------------------------------------------------------CAA-----TAT--ATTTTTTGCTACC
droGri2 scaffold_14906:10741066-10741101 + ATATATAAAAATAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATCA-GAAAAGGTCATGAGT-------------------------------
droWil2 scf2_1100000005098:572-790 + GTGC-------------------------------------------------------AACGCATAGAAGGAAGCATCTCCGACCATATAA--AGTATACACTGCGCGTCATCAGGTTAGCGCCCCCCCTCT--CTCTACATATA-TTTTCTAA--TT-TTTACTTT-----C------C------------CATTGCACTGGACTTCGTAAAAGT---T----TTTTGTTGTTGTTACAG----------------------TACTCA--TTTGT--GAT----CATTATGGCAAGAGAAGAAAGCTTCTTAGAAGAACCGT-----TATATATTTTTTCGCGTT
dp5 2:19262652-19262735 - AAGCATACAACTTAAAGCAGGAAGGTCATGAGTCCGTGGCAGTCTGGTTCGAGGAGGCCATTACAATTGGGTGAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTGCACA
droPer2 scaffold_42:423468-423510 + TGC------------------------------------------------------------------------------AT-ATACATGA--CACATACACTGCTCGTCATCGGGATAGCGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13340:12429585-12429785 - dan_3048 CGGT-------------------------------------------------------GAGGTGA---------------GT-ATGGATAC--TACATACACTGCGCGTCATCAGATTAGCGCCCCCCTTTT--GGTTTTACTTT--ATTGCAT--CTATCTCTGTT-----T------C------------TATTGCACGCAACTTCAAAATTTT---T----GTTGTTGCTTT-TAAAA----------------------TGCACA--AATTG--TCG----CTTTCTGACAGA-AATACCGTTAGGTGAGAGAATCCGT-----TATCTATTTTTTCTTCTT
droBip1 scf7180000392001:722-933 + GTGC-------------------------------------------------------AACGCAGTGAAGGAGACATCTCCGAACCTAT----AAAGTACACTGCGCGTCATCAGGTTAGCGCCCCCCATCT--AACTCAACATT--AGT--GA--TT-ATTTTTCGGTAAAC------A------------CATTGA-----GCTACATTGATCCAA-T----AATTTTTTTAA-TAAACTGCAATGAATTTACTTTAAAATTAAACT--AAT--------------------------TTGAATCATATAACGCT-----TAAGATAAGAT-----TTTAATGA
droKik1 scf7180000302148:19015-19213 - AACC-------------------------------------------------------AT-----------------TGCGCAT-CCGACA--TATATACACTCCGTTTCACTTGAATAGCACTCAAAAATT--TTCATAA----------TTA--CC-TGTTTCAT-----CTCTCAGCAACTGCTTGATCT---------AATGCAATGATTGT---T----GGTGTTTTATT-TTCGT--------------------------CATA-TT----ATATACTCTCTTCCAACAAAAATTGGAAGTCTGAAAATGTACCGT-----AATTTTCTTTTCAAATTG
droFic1 scf7180000454066:378999-379184 - GTAA-------------------------------------------------------------------------------GCCTTAAGC--AATATACACTGCGCGTCATCAGATTAGCGCCCCCTGAGC--ATTCTCGGG-----TAATGT--CC-AATATTAT-----CC-----AAACTATCAAGGCT---------AAAGCCATAAAACT--TTTTTTGACGA-------TA--CTTTTAATAAT----------------------------AT-----TC-TTCAAAATGAGATAAGGTACATAATGATAAGTAT-----A-ACAATAATATTTTATT
droRho1 scf7180000766114:191-398 - CAGT---------------------------------------------------------------GAAGGAGACATTTTCGACCCTATACAGTATATACACTGCTCGTCACCAGGTTAGCGCCCCCTGTTA--CTCT---TTTCTTTGAATTC--TC-CTTTTTTT-----T------G------------TATTGCTCTTAAATTTGTAATTTG---T----TTTGCTATATG----------------------------TAATTA--AATGG--TATCTCTCTCATTGAGAATAAAATGAAGCATGTGAGATTAATCTT-----TACATTTTT-AATCTACT
droTak1 scf7180000415405:17143-17325 + ATC----------------------------------------------------------------------------------------A--TTTATACACTGCGCGTCACCAGGATAGCGCCCTCTGTTA--CTCTTCTCTTT---GAATTCTCCTATCTCTTTT-----T------G------------TATTGCTCTTAAATTTGTAATTTG---T----TTTGCTATATG----------------------------TAATTA--AATGG--TATCTCTCTCATTGAGAATAAAATGAAGCATGTGAGATTAACCGT-----TACATTTT--AATCTACT
dm3 chr3LHet:1190153-1190341 - ACT------------------------------------------------------------------------------------CCTTC--CATATATGCTGCGCGTCATCAGATTATCGCCCCCTGCAT--GGCTCCGTTTCTTCTTATGT--TC-TGTATTTT-----G------C------------CATTGCACGAAAATCTATCAATGT---A----ATTGTTTTTTG-TTCACTG------AT-------------------A--T-T--CACATCTCTCTTTGAGGATAAAAAAAAATAC-TGGGTAGAACTTT-----TATCTTTGCAATTCTGCT
droSim2 3l:23671106-23671286 - T----------------------------------------------------------------------------------------------ATGTACACTGCGCGTTATCAAATTAGTGCCCCCTGCAT--CGCTCCGTTTCTTCTTATGT--TT-TGTATTTT-----G------C------------CATTGCGCGAAAATCTATGCATTT---T----ATTGTTTTTGG-TTCACTG------AT---------------------AT----CCCCTCTCTCTTTGAGGATAAAAAAGAGGTCCTCAGAAGAACCGT-----TATCTTTTTAATTCTGCT
droSec2 scaffold_78:126189-126374 + GCAA--------------------------------------------------------------------------TGGGT-CCTGATAA--AGAATACACTGCGCGTCAGCAGATTATCGCCTCCCTGCA--------------TCTTATGT--TT-TGTATTTT-----G------G------------CCTTGCACGAAAATCTATAAATTG---T----ATTTTTTTTTG-TTCTCTG------AT-------------------A--T----CCCCTATCTCTGTGAGGATAAAAAAGAAGGCCTGAGAAGAACCGT-----TATCGTTTTAATTCTGCT
droYak3 2R:1490679-1490794 - AT-----------------------------------------------------------------------------------------------GTACACTGCGTGTCATCAGATTAGCGGCTCCTGCTT--GTTTCCGTTTC---TTATGT--TC-TGTATTTT-----C------C------------ACTTGCACGAAAATTCGGCAATGT---T----GTAGATGTTTG-TACCCTG------AT-------------------A--T----T------------------------------------------------------------------C
droEre2 scaffold_4512:874300-874484 + A-------------------------------------------------------------------------------------------------TACACTGCGCGTCATCAGATTAGCGCCCCT-GCAT--GGCTCCGTTTCTTCTTACGT--TC-TGTATTTT-----G------C------------CATTGCACAAAAATTCTTCCATGT---T----GT---GTTTTG-TTTACTG------ATG-----------TAAGCA---TCACTCTCTCTCTCCCTTTGACAATAAAAAAGAGGTCGTAAGAAGAACCAT-----TATCTTGTAAATTCTGCC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
ATATTTAAAGCAAC-------AATCTGAAGAAGCAA-------------TGAGTGGTTCCACTCAGTGGGGTAAGCATTGCGCAC-TCACTA--TATATACACTTCGCGTCATCAGGTTAGCGCCCCCCCTTA--CACTCATTTTC-TTTTACGT--TTTTCTCTTTG-----C------C------------TATTGCACACAACTTCTTGGTTTT---T----TTTTTATTTCA-TTA------------------------TCATCA--TATGA--GATGTCTCT----CATACCAAAAAAAAGCGCGAGTGAAAACCCGT-----TATGTTTTATTTTCTATCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....................................................................................................................................................TTACGT--TTTTCTCTTTG-----C------C------------TATTGCAC..................................................................................................................................................27202.90585800000
.....................................................................................................................................................TTACGT--TTTTCTCTTTG-----C------C------------TATTGCA...................................................................................................................................................26201.95393900000
.....................................................................................................................................................TTACGT--TTTTCTCTTTG-----C------C------------TATTGC....................................................................................................................................................25200.75150200130
..............................................................................................................................................................................................................................................TA------------------------TCATCA--TATGA--GATGTCTCT----CATA...................................................26200.55110000110
..............................................................................................................CATCAGGTTAGCGCCCCCCCTTA--CAC.................................................................................................................................................................................................................26200.459400032
............................................................................................................GTCATCAGGTTAGCGCCCCCCCTTA--....................................................................................................................................................................................................................25200.306500001
.....................................................................................................................................................TTACGT--TTTTCTCTTTG-----C------C------------TATTGCACAC................................................................................................................................................29200.306000060
..............................................................................................................................................................TTTCTCTTTG-----C------C------------TATTGCACACAAC.............................................................................................................................................25200.255500000
......................................................................................................................................................TACGT--TTTTCTCTTTG-----C------C------------TATTGCAC..................................................................................................................................................26200.255500000
..............................................................................................................CATCAGGTTAGCGCCCCCCCTTA--CA..................................................................................................................................................................................................................25200.153300000
.....................................................................................................................................................TTACGT--TTTTCTCTTTG-----C------C------------TATT......................................................................................................................................................23200.153300000
.....................................................................................................................................................TTACGT--TTTTCTCTTTG-----C------C------------TATTGCACA.................................................................................................................................................28200.153300000
................................................................................................................TCAGGTTAGCGCCCCCCCTT.......................................................................................................................................................................................................................20200.153300000
......................................................................................................................................................TACGT--TTTTCTCTTTG-----C------C------------TATTGC....................................................................................................................................................24200.153300000
...............................................................................................................................................................TTCTCTTTG-----C------C------------TATTGCACACAACTTC..........................................................................................................................................27200.153200010
..............................................................................................................CATCAGGTTAGCGCCCCCCCTTA--....................................................................................................................................................................................................................23200.102200000
..............................................................................................................CATCAGGTTAGCGCCCCCCCTTA--CACT................................................................................................................................................................................................................27200.102200000
......................................................................................................................................................TACGT--TTTTCTCTTTG-----C------C------------TATTGCACAC................................................................................................................................................28200.102100010
..............................................................................................................CATCAGGTTAGCGCCCCCC..........................................................................................................................................................................................................................19200.102200000
............................................................................................................GTCATCAGGTTAGCGCCCCCCCTTA--C...................................................................................................................................................................................................................26200.102200000
.............................................................................................................TCATCAGGTTAGCGCCCCCC..........................................................................................................................................................................................................................20200.051000010
.............................................................................................................TCATCAGGTTAGCGCCCCCCCTTA--CACC................................................................................................................................................................................................................28200.051100000
......................................................................................................CTTCGCGTCATCAGGTTAGCG................................................................................................................................................................................................................................21200.051001000
................................................................................................................TCAGGTTAGCGCCCCCCCTTA--CACTC...............................................................................................................................................................................................................26200.051100000
..............................................................................................................................................................TTTCTCTTTG-----C------C------------TATTGCACAC................................................................................................................................................22200.051100000
...............................................................................................................................................................TTCTCTTTG-----C------C------------TATTGCACACAAC.............................................................................................................................................24200.051100000
...............................................................................................................................................................TTCTCTTTG-----C------C------------TATTGCACACAACT............................................................................................................................................25200.051100000
....................................................................................................................................................TTTACGT--TTTTCTCTTTG-----C------C------------TATTGCA...................................................................................................................................................27200.051100000
..................................................................................................................................................................TCTTTG-----C------C------------TATTGCACAC................................................................................................................................................18200.051100000
.....................................................................................................................................................TTACGT--TTTTCTCTTTG-----C------C------------TA........................................................................................................................................................21200.051100000
.....................................................................................................................................................TTACGT--TTTTCTCTTTG-----C------C------------TATTGCACC.................................................................................................................................................28200.051100000
..............................................................................................................................................................................................................................................TA------------------------TCATCA--TATGA--GATGTCTCT----CATACC.................................................28200.051000010
................................................................................................................TCAGGTTAGCGCCCCCCCT........................................................................................................................................................................................................................19200.051100000
........................................................................................................................................................CGT--TTTTCTCTTTG-----C------C------------TATTG.....................................................................................................................................................21200.051100000
.....................................................................................................................TTAGCGCCCCCCCTTA--CAC.................................................................................................................................................................................................................19200.051100000
..............................................................................................................................................................................................................................................TA------------------------TCATCA--TATGA--GATGTCTCT----CA.....................................................24200.051000001
..............................................................................................................................................................TTTCTCTTTG-----C------C------------TATTGCACACAACTT...........................................................................................................................................27200.051100000
.............................................................................................................TCATCAGGTTAGCGCCCCCCCTTA--C...................................................................................................................................................................................................................25200.051100000
..............................................................................................................................................................TTTCTCTTTG-----C------C------------TATTGCACACAACTTCT.........................................................................................................................................29200.051100000
...................................................................................................................................................TTTTACGT--TTTTCTCTTTG-----C------C------------TATTGCA...................................................................................................................................................28200.051100000
.......................................................................................................................................................ACGT--TTTTCTCTTTG-----C------C------------TATTGCAC..................................................................................................................................................25200.051100000
.................................................................................................................................................................................................................................................................................................................AGCGCGAGTGAAAACCCGT-----TATGTTT...........26200.051100000
..............................................................................................................................................................TTTCTCTTTG-----C------C------------TATTGCACACAACT............................................................................................................................................26200.051100000
..................................................................................................TACACTTCGCGTCATCAGGTTAGCGCC..............................................................................................................................................................................................................................27200.051000010
...............................................................................................................................................................................................................................................A------------------------TCATCA--TATGA--GATGTCTCT----CATA...................................................25200.051000010
..............................................................................................................................................................TTTCTCTTTG-----C------C------------TATTGCACACAACTTC..........................................................................................................................................28200.051000010
.............................................................................................................TCATCAGGTTAGCGCCCCCCCTTA--CAC.................................................................................................................................................................................................................27200.051100000
..................................................................................................................................................................................................................................TTTTATTTCA-TTA------------------------TCATCA--TATGA--GA..................................................................26200.051000010
droVir3
TA--------------------------------------------------------------------------------------------TGAATACGCTGCGCATCATCAGATTAGCCCCTCCCCCCTTACAC-TCGTTTCTTTTTGCAA--AT-ACCTTTTT-----C------C------------TATTGCATGGAACTTCCTCAATTT---T----TTGTTTTTCCA-ATCACAG------CT---------------------------------------------------------------------CAA-----TAT--ATTTTTTGCTACCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droGri2
ATATATAAAAATAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATCA-GAAAAGGTCATGAGT-------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
GTGC-------------------------------------------------------AACGCATAGAAGGAAGCATCTCCGACCATATAA--AGTATACACTGCGCGTCATCAGGTTAGCGCCCCCCCTCT--CTCTACATATA-TTTTCTAA--TT-TTTACTTT-----C------C------------CATTGCACTGGACTTCGTAAAAGT---T----TTTTGTTGTTGTTACAG----------------------TACTCA--TTTGT--GAT----CATTATGGCAAGAGAAGAAAGCTTCTTAGAAGAACCGT-----TATATATTTTTTCGCGTTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................................................................TATAA--AGTATACACTGCGCGTCATCA........................................................................................................................................................................................................................................2614.00400040
.............................................................................................................................................................................................................................................TACAG----------------------TACTCA--TTTGT--GAT----CATTATGG.....................................................2741.50600060
.........................................................................................................................................................................................................................................................................................T----CATTATGGCAAGAGAAGAAAGCTTCT...................................2741.25500041
................................................................................................................................................................................................................................................................................................TTATGGCAAGAGAAGAAAGCTTCT...................................2441.25500050
.........................................................................................TAA--AGTATACACTGCGCGTCATC.........................................................................................................................................................................................................................................2311.00100010
.................................................................................CGACCATATAA--AGTATACACTGCGCGT.............................................................................................................................................................................................................................................2711.00100010
........................................................................................ATAA--AGTATACACTGCGCGTCATCAGG......................................................................................................................................................................................................................................2711.00100010
.......................................................................................TATAA--AGTATACACTGCGCGT.............................................................................................................................................................................................................................................2111.00100010
..........................................................................................AA--AGTATACACTGCGCGTCATCAGGT.....................................................................................................................................................................................................................................2611.00100010
.........................................................................................................................................................................................................................................................................................T----CATTATGGCAAGAGAAGAAAGCT......................................2440.75301020
..........................................................................................................................................................................................................................................TGTTACAG----------------------TACTCA--TTTGT--GAT----CAT..........................................................2540.50201010
................................................................................................TATACACTGCGCGTCATCAGGTTAGCG................................................................................................................................................................................................................................2790.44400040
...................................................................................................................................................................................................................................................................................GT--GAT----CATTATGGCAAGAGAAG............................................2240.25101000
....................................................................................................................................................................................................................................TGTTGTTGTTACAG----------------------TACTCA--TTTGT--....................................................................2540.25100010
.................................................................................................................................................................................................................................................................................................TATGGCAAGAGAAGAAAGCTTCTTAG................................2640.25100010
................................................................................................................................................................................................................................................................................................TTATGGCAAGAGAAGAAAGCTTCTT..................................2540.25100010
..................................................................................................................................................................................................................................................................................TGT--GAT----CATTATGGCAAGAGAAGAA..........................................2540.25100010
....................................................................................................................................................................................................TGCACTGGACTTCGTAAAAGT---T----TTT.......................................................................................................................2540.25101000
.......................................................................................................................................................................................................................................................................................GAT----CATTATGGCAAGAGAAGAAAGCT......................................2640.25100010
......................................................................................................................................................................TT-----C------C------------CATTGCACTGGACTTCGTAAAA....................................................................................................................................2640.25100010
...................................................................................................................................................................................................................................................................................................TGGCAAGAGAAGAAAGCTTCT...................................2140.25100010
..........................................................................................................................................................................................................................................TGTTACAG----------------------TACTCA--TTTGT--GAT----.............................................................2240.25100010
.........................................................................................................................................................AA--TT-TTTACTTT-----C------C------------CATTGCA...................................................................................................................................................2140.25100010
.......................................................................................................................................................................T-----C------C------------CATTGCACTGGACTTCGTAAAA....................................................................................................................................2540.25101000
...................................................................................................................................................................................................................................................................................................TGGCAAGAGAAGAAAGCTTCTTAGAAG.............................2740.25100010
...................................................................................................................................................................................................................................................................................................TGGCAAGAGAAGAAAGCTTCTT..................................2240.25100010
...................................................................................................................................................................................................................................................................................................TGGCAAGAGAAGAAAGCTTCTTAGA...............................2540.25100010
..............................................................................................................................................................................................................................................ACAG----------------------TACTCA--TTTGT--GAT----CATTATG......................................................2540.25101000
................................................................................................................................................................................................................................................................................................TTATGGCAAGAGAAGAAAGCT......................................2140.25100010
.................................................................................................................................................................................................................................................................................................TATGGCAAGAGAAGAAAGCTTCTTAGA...............................2740.25100010
..................................................................................................................................................................................................................................................................................................ATGGCAAGAGAAGAAAGCTTC....................................2140.25100010
.............................................................................................................................................................................................................................................TACAG----------------------TACTCA--TTTGT--GAT----CATTAT.......................................................2540.25101000
......................................................................................................................................................................TT-----C------C------------CATTGCACTGGACTTCGTAAAAGT---...............................................................................................................................2840.25100010
.................................................................................................................................................................................................................................................................................................TATGGCAAGAGAAGAAAGCTTCTTA.................................2540.25100010
..........................................................................................................................................................................................................................................TGTTACAG----------------------TACTCA--TTTGT--GAT----CATT.........................................................2640.25100010
.........................................................................................................................................................................................................................................................................................T----CATTATGGCAAGAGAAGAAAGCTT.....................................2540.25100010
.......................................................................................................................................................................T-----C------C------------CATTGCACTGGACTTCGTAAAAGT---T----..........................................................................................................................2840.25101000
..............................................................................................................................................................................................................................................................................................CATTATGGCAAGAGAAGAAAGC.......................................2240.25100010
..................................................................................................TACACTGCGCGTCATCAGGTTAGCG................................................................................................................................................................................................................................25180.22400040
.............................................................CGCATAGAAGGAAGCATCTCCGACC.....................................................................................................................................................................................................................................................................25200.20400040
..............................................................................................................CATCAGGTTAGCGCCCCCCC.........................................................................................................................................................................................................................2060.17100010
..........................................................................................................GCGTCATCAGGTTAGCGCCCCCC..........................................................................................................................................................................................................................23150.13200011
.......................................................................................................TGCGCGTCATCAGGTTAGCGCCCCCC..........................................................................................................................................................................................................................26150.13202000
...........................................................................................................................................................................................................................................................................................................GAAGAAAGCTTCTTAGAAGAACCGT-----TA................2780.13101000
.........................................................................................................................................................................................................................................................................................................GAGAAGAAAGCTTCTTAGAAG.............................2190.11100010
..........................................................................................................................................................................................................................................................................................................AGAAGAAAGCTTCTTAGAAGAACCG........................2590.11100010
................................................................................................TATACACTGCGCGTCATCAGGTTAGCGC...............................................................................................................................................................................................................................2890.11100010
................................................................................................................................................................................................................................................................................................................AAGCTTCTTAGAAGAACCGT-----TATA..............2490.11101000
................................................................................................................................................................................................................................................................................................................AAGCTTCTTAGAAGAACCGT-----TAT...............23100.10101000
.................................................................................................ATACACTGCGCGTCATCAGGTTAGCG................................................................................................................................................................................................................................26150.07100010
........................................................................................................GCGCGTCATCAGGTTAGCGCCCCCC..........................................................................................................................................................................................................................25150.07100001
...................................................................................................ACACTGCGCGTCATCAGGTTAGCGCC..............................................................................................................................................................................................................................26180.06101000
..................................................................................................TACACTGCGCGTCATCAGGTTAGCGC...............................................................................................................................................................................................................................26180.06100010
..................................................................................................TACACTGCGCGTCATCAGGTTAGC.................................................................................................................................................................................................................................24180.06101000
...................................................................................................ACACTGCGCGTCATCAGGTTAGCG................................................................................................................................................................................................................................24180.06100010
.......................................................................................................TGCGCGTCATCAGGTTAGCGCCC.............................................................................................................................................................................................................................23190.05100010
.......................................................................................................TGCGCGTCATCAGGTTAGC.................................................................................................................................................................................................................................19190.05100010
.............................................................................................................TCATCAGGTTAGCGCCCCCC..........................................................................................................................................................................................................................20200.05101000
...C-------------------------------------------------------AACGCATAGAAGGAAGCATCTCCGAC......................................................................................................................................................................................................................................................................27200.05101000
..GC-------------------------------------------------------AACGCATAGAAGGAAG................................................................................................................................................................................................................................................................................18200.05100010
............................................................ACGCATAGAAGGAAGCATCTCCGACCA....................................................................................................................................................................................................................................................................27200.05100010
...............................................................CATAGAAGGAAGCATCTCCGA.......................................................................................................................................................................................................................................................................21200.05101000
..GC-------------------------------------------------------AACGCATAGAAGGAAGCATCTC..........................................................................................................................................................................................................................................................................24200.05101000
.TGC-------------------------------------------------------AACGCATAGAAGGAAGCAT.............................................................................................................................................................................................................................................................................22200.05100010
.......................................................................................................................................................................................................................GT---T----TTTTGTTGTTGTTACAT----------------------A..................................................................................21200.05100010
dp5
AAGCATACAACTTAAAGCAGGAAGGTCATGAGTCCGTGGCAGTCTGGTTCGAGGAGGCCATTACAATTGGGTGAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTGCACASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
TGC------------------------------------------------------------------------------AT-ATACATGA--CACATACACTGCTCGTCATCGGGATAGCGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
CGGT-------------------------------------------------------GAGGTGA---------------GT-ATGGATAC--TACATACACTGCGCGTCATCAGATTAGCGCCCCCCTTTT--GGTTTTACTTT--ATTGCAT--CTATCTCTGTT-----T------C------------TATTGCACGCAACTTCAAAATTTT---T----GTTGTTGCTTT-TAAAA----------------------TGCACA--AATTG--TCG----CTTTCTGACAGA-AATACCGTTAGGTGAGAGAATCCGT-----TATCTATTTTTTCTTCTTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................................GTCATCAGATTAGCGCCCCCCTTTT--GG..................................................................................................................................................................................................................2784.13332850000
............................................................................................................GTCATCAGATTAGCGCCCCCCTTTT--G...................................................................................................................................................................................................................2681.139900000
.......................................................................................GATAC--TACATACACTGCGCGT.............................................................................................................................................................................................................................................2111.001000010
......................................................................................GGATAC--TACATACACTGCGCGTCATCA........................................................................................................................................................................................................................................2711.001100000
.............................................................................................................TCATCAGATTAGCGCCCCCCTTTT--GG..................................................................................................................................................................................................................2680.887610000
............................................................................................................GTCATCAGATTAGCGCCCCCCTTT.......................................................................................................................................................................................................................2480.504220000
...................................................................................................................................................................CTGTT-----T------C------------TATTGCACGCAACTTC..........................................................................................................................................2390.444220000
...................................................................................................................................................................CTGTT-----T------C------------TATTGCACGCAACTTCAA........................................................................................................................................2580.383210000
...................................................................................................................................................................CTGTT-----T------C------------TATTGCACGCAACTTCA.........................................................................................................................................2490.333210000
............................................................................................................GTCATCAGATTAGCGCCCCCCTTTT--....................................................................................................................................................................................................................2580.252020000
...................................................................................................................................................................CTGTT-----T------C------------TATTGCACGCAACTTCAAA.......................................................................................................................................2680.252200000
............................................................................................................GTCATCAGATTAGCGCCCCCCT.........................................................................................................................................................................................................................2280.252110000
............................................................................................................GTCATCAGATTAGCGCCCCCCTTTT--GGTT................................................................................................................................................................................................................2980.252110000
...................................................................................................................................................................CTGTT-----T------C------------TATTGCACGCAACTTCAAAAT.....................................................................................................................................2880.252110000
............................................................................................................GTCATCAGATTAGCGCCCCCCTTTT--GGT.................................................................................................................................................................................................................2880.252200000
....................................................................................................................................................................................................................................................................................................GACAGA-AATACCGTTAGGTGA.................................2180.252002000
...........................................................................................................CGTCATCAGATTAGCGCCCCCCTTTT--....................................................................................................................................................................................................................2680.252200000
..............................................................................................................CATCAGATTAGCGCCCCCCTTTT--GG..................................................................................................................................................................................................................2580.252110000
.......................................................................................................................................................................................................................................GCTTT-TAAAA----------------------TGCACA--AATTG--TCG----CT...........................................................2680.252200000
...........................................................................................................CGTCATCAGATTAGCGCCCCCCTTT.......................................................................................................................................................................................................................2580.252110000
.............................................................................................................TCATCAGATTAGCGCCCCCCTTTT--G...................................................................................................................................................................................................................2580.252200000
...................................................................................................................................................................CTGTT-----T------C------------TATTGCACGCAACT............................................................................................................................................2190.222110000
.................................................................................................................................................................................................................................................................................ATTG--TCG----CTTTCTGACAGA-AATACCGT........................................2780.131100000
...............................................................................................................ATCAGATTAGCGCCCCCCTTTT--GG..................................................................................................................................................................................................................2480.131010000
.......................................................................................................................................................................................................................................GCTTT-TAAAA----------------------TGCACA--AATTG--TCG----.............................................................2480.131100000
.............................................................................................................TCATCAGATTAGCGCCCCCCTTTT--GGTTT...............................................................................................................................................................................................................2980.131100000
...................................................................................................................................................................................................................................................................................TG--TCG----CTTTCTGACAGA-AATACCGTTAGG....................................2980.131100000
....................................................................................................................................................................................................................................GTTGCTTT-TAAAA----------------------TGCACA--AATTG--TCG----C............................................................2880.131100000
........................................................................................................................................................................................................................................................................................CG----CTTTCTGACAGA-AATACCGTT.......................................2380.131100000
........................................................................................................................................................................................................................................CTTT-TAAAA----------------------TGCACA--AATTG--TCG----C............................................................2480.131100000
......................................................................................................................................................................................................................................................................................................CAGA-AATACCGTTAGGTGAGA...............................2180.131010000
...................................................................................................................................................................................................................................................................................................TGACAGA-AATACCGTTAGGTGAGAGAAT...........................2880.131100000
............................................................................................................GTCATCAGATTAGCGCCCCCC..........................................................................................................................................................................................................................2180.131100000
.................................................................................................................................................................................................................................................................................................TCTGACAGA-AATACCGTTAGGTGAGAG..............................2780.131100000
...................................................................................................................................................................................................................................................................................................TGACAGA-AATACCGTTAGGTGAGAG..............................2580.131001000
.............................................................................................................................CCCCTTTT--GGTTTTACTTT--ATTGCAT--C.............................................................................................................................................................................................2780.131010000
..........................................................................................................................................TTTACTTT--ATTGCAT--CTATCT........................................................................................................................................................................................2180.131001000
........................................................................................................................................................................................................................................................................................CG----CTTTCTGACAGA-AATACCGTTAGG....................................2680.131010000
..................................................................................................................................................................TCTGTT-----T------C------------TATTGCACGCAACTTCAA........................................................................................................................................2680.131010000
....................................................................................................................................................................................................................................................................................................GACAGA-AATACCGTTAGGTGAG................................2280.131000010
...................................................................................................................................................................CTGTT-----T------C------------TATTGCACGCAACTTCAAAAA.....................................................................................................................................2880.131100000
.......................................................................................................................................................................................................................................GCTTT-TAAAA----------------------TGCACA--AATTG--TCG----C............................................................2580.131010000
...................................................................................................................................................................CTGTT-----T------C------------TATTGCACGCAACTTCAAAA......................................................................................................................................2780.131010000
........................................................................................................GCGCGTCATCAGATTAGCGCCCCCC..........................................................................................................................................................................................................................2580.131000001
..........................................................................................................................................TTTACTTT--ATTGCAT--CTATCTCTGTT-----..............................................................................................................................................................................2680.131100000
.....................................................................................................................................................................................................................................TTGCTTT-TAAAA----------------------TGCACA--AATTG--TCG----C............................................................2780.131100000
.....................................................................................................................................................................................................................TTTT---T----GTTGTTGCTTT-TAAAA----------------------TGCACA--...........................................................................2780.131010000
......................................................................................................................................................................................................................TTT---T----GTTGTTGCTTT-TAAAA----------------------TGCACA--...........................................................................2680.131100000
......................................................................................................................................................................TT-----T------C------------TATTGCACGCAACTTCAAAAT.....................................................................................................................................2580.131100000
............................................................................................................GTCATCAGATTAGCGCCCCCCTTTT--GTC.................................................................................................................................................................................................................2880.131100000
..................................................................................................................................................................................................................................................................................................CTGACAGA-AATACCGTTAGGTGAGAGA.............................2780.131010000
.................................................................................................................CAGATTAGCGCCCCCCTTTT--GG..................................................................................................................................................................................................................2280.131100000
................................................................................................................................................................................................................................................................................................TTCTGACAGA-AATACCGT........................................1880.131010000
.................................................................................................................................................................................................TATTGCACGCAACTTCAAAATTTT---T----GT........................................................................................................................2780.131100000
.........................................................................................................................................................................................................................................TTT-TAAAA----------------------TGCACA--AATTG--TCG----C............................................................2380.131100000
...............................................................................................................................CCTTTT--GGTTTTACTTT--ATTGCAT--C.............................................................................................................................................................................................2580.131010000
................................................................................................................................................................................................................................................................................................TTCTGACAGA-AATACCGTTAGGTGAGA...............................2780.131010000
..........................................................................................................GCGTCATCAGATTAGCGCCCCCC..........................................................................................................................................................................................................................2380.131000001
..................................................................................................................................................................................................................................................................................................CTGACAGA-AATACCGTTAGGTGAGAGAA............................2880.131100000
..................................................................................................................................................................................................................................................................................TTG--TCG----CTTTCTGACAGA-AATACCGT........................................2680.131100000
.............................................................................................................TCATCAGATTAGCGCCCCCCTTTT--GGT.................................................................................................................................................................................................................2780.131100000
...........................................................................................................................................TTACTTT--ATTGCAT--CTATCT........................................................................................................................................................................................2080.131100000
....................................................................................................................................................................TGTT-----T------C------------TATTGCACGCAACTTC..........................................................................................................................................2290.111010000
...................................................................................................................................................................CTGTT-----T------C------------TATTGCACGCAACTT...........................................................................................................................................2290.111100000
............................................................................................................GTCATCAGATTAGCGCCCC............................................................................................................................................................................................................................19160.061010000
............................................................................................................GTCATCAGATTAGCGCCCCC...........................................................................................................................................................................................................................20160.061010000
...........................................................................................................CGTCATCAGATTAGCGCCC.............................................................................................................................................................................................................................19180.061010000
droBip1
GTGC-------------------------------------------------------AACGCAGTGAAGGAGACATCTCCGAACCTAT----AAAGTACACTGCGCGTCATCAGGTTAGCGCCCCCCATCT--AACTCAACATT--AGT--GA--TT-ATTTTTCGGTAAAC------A------------CATTGA-----GCTACATTGATCCAA-T----AATTTTTTTAA-TAAACTGCAATGAATTTACTTTAAAATTAAACT--AAT--------------------------TTGAATCATATAACGCT-----TAAGATAAGAT-----TTTAATGASizeHit CountTotal NormTotal
No Reads
droKik1
AACC-------------------------------------------------------AT-----------------TGCGCAT-CCGACA--TATATACACTCCGTTTCACTTGAATAGCACTCAAAAATT--TTCATAA----------TTA--CC-TGTTTCAT-----CTCTCAGCAACTGCTTGATCT---------AATGCAATGATTGT---T----GGTGTTTTATT-TTCGT--------------------------CATA-TT----ATATACTCTCTTCCAACAAAAATTGGAAGTCTGAAAATGTACCGT-----AATTTTCTTTTCAAATTGSizeHit CountTotal NormTotal
No Reads
droFic1
GTAA-------------------------------------------------------------------------------GCCTTAAGC--AATATACACTGCGCGTCATCAGATTAGCGCCCCCTGAGC--ATTCTCGGG-----TAATGT--CC-AATATTAT-----CC-----AAACTATCAAGGCT---------AAAGCCATAAAACT--TTTTTTGACGA-------TA--CTTTTAATAAT----------------------------AT-----TC-TTCAAAATGAGATAAGGTACATAATGATAAGTAT-----A-ACAATAATATTTTATTSizeHit CountTotal NormTotal
No Reads
droRho1
CAGT---------------------------------------------------------------GAAGGAGACATTTTCGACCCTATACAGTATATACACTGCTCGTCACCAGGTTAGCGCCCCCTGTTA--CTCT---TTTCTTTGAATTC--TC-CTTTTTTT-----T------G------------TATTGCTCTTAAATTTGTAATTTG---T----TTTGCTATATG----------------------------TAATTA--AATGG--TATCTCTCTCATTGAGAATAAAATGAAGCATGTGAGATTAATCTT-----TACATTTTT-AATCTACTSizeHit CountTotal NormTotal
No Reads
droTak1
ATC----------------------------------------------------------------------------------------A--TTTATACACTGCGCGTCACCAGGATAGCGCCCTCTGTTA--CTCTTCTCTTT---GAATTCTCCTATCTCTTTT-----T------G------------TATTGCTCTTAAATTTGTAATTTG---T----TTTGCTATATG----------------------------TAATTA--AATGG--TATCTCTCTCATTGAGAATAAAATGAAGCATGTGAGATTAACCGT-----TACATTTT--AATCTACTSizeHit CountTotal NormTotal
No Reads
dm3
ACT------------------------------------------------------------------------------------CCTTC--CATATATGCTGCGCGTCATCAGATTATCGCCCCCTGCAT--GGCTCCGTTTCTTCTTATGT--TC-TGTATTTT-----G------C------------CATTGCACGAAAATCTATCAATGT---A----ATTGTTTTTTG-TTCACTG------AT-------------------A--T-T--CACATCTCTCTTTGAGGATAAAAAAAAATAC-TGGGTAGAACTTT-----TATCTTTGCAATTCTGCTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...................................................................................................................................................................................................................................................................................................................TAC-TGGGTAGAACTTT-----TATC..............2015.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................T-T--CACATCTCTCTTTGAGGA..................................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................C-TGGGTAGAACTTT-----TATC..............1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................TCATCAGATTATCGCCCCCTGCAT--GGC.................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................TCATCAGATTATCGCCCCCTGCAT--GG..................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................TGCACGAAAATCTATCAATGT---A----AT........................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................TGT---A----ATTGTTTTTTG-TTCACTG------AT-------------------A--T-.......................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................TAC-TGGGTAGAACTTT-----TATCTTTGC.........2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................TCTTCTTATGT--TC-TGTATTTT-----G------C------------CAT.......................................................................................................................................................2622.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000101100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................TCAGATTATCGCCCCCTGCAT--GGCTCC..............................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................TAC-TGGGTAGAACTTT-----TATCTTTGCAA.......2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................AAAAAATAC-TGGGTAGAACTTT-----TATC..............2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................TAC-TGGGTAGAACTTT-----TATCTTTGCA........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................................TCTATCAATGT---A----ATTGTTTTTTG-T.............................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.......................................................................................................TGCGCGTCATCAGATTATCGCCC.............................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................AC-TGGGTAGAACTTT-----TATCTTTGC.........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................TTATCGCCCCCTGCAT--GGCTCCGTTTC.........................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................TGGGTAGAACTTT-----TATCTTTGCAAT......2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................AGAACTTT-----TATCTTTGCAATT.....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................TAAAAAAAAATAC-TGGGTAGAAC..........................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................TAGAACTTT-----TATCTTTGCAATTCTGC.2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................TAAAAAAAAATAC-TGGGTAGAACTTT-----..................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................TG-TTCACTG------AT-------------------A--T-T--CACATCTCTCTTT.......................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................TTC--CATATATGCTGCGCGTCATC.........................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................TTCACTG------AT-------------------A--T-T--CACATCTCTCTTT.......................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................T-------------------A--T-T--CACATCTCTCTTTGAGGATAAAA.............................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................TC--CATATATGCTGCGCGTCATCAGA......................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...............................................................................................................ATCAGATTATCGCCCCCTGCAT--GGC.................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................CAATGT---A----ATTGTTTTTTG-TTC...........................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................TTGCACGAAAATCTATCAATGT---A----AT........................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................TCAGATTATCGCCCCCTGCAT--GGCTCCGT............................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................TTTTTTG-TTCACTG------AT-------------------A--T-T--CACATC..............................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................TGCGCGTCATCAGATTATCGCCCCC...........................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................TC--CATATATGCTGCGCGTCATCAGAT.....................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................TG------AT-------------------A--T-T--CACATCTCTCTTTGAGGATA................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................ATATATGCTGCGCGTCATCAGA......................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................TTGTTTTTTG-TTCACTG------AT-------------------A--T-T--CACAT...............................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................ATAC-TGGGTAGAACTTT-----TATC..............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................TGCACGAAAATCTATCAATGT---A----ATTG......................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................TCTTATGT--TC-TGTATTTT-----G------C------------CATTGC....................................................................................................................................................2631.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................GATTATCGCCCCCTGCAT--GGCTCC..............................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..T------------------------------------------------------------------------------------CCTTC--CATATATGCTGCGCGTCATC.........................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.......................................................................................................TGCGCGTCATCAGATTATCGC...............................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................TGT---A----ATTGTTTTTTG-TTCACTG------AT-------------------A--.........................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................TTTG-TTCACTG------AT-------------------A--T-T--CACATCTCTC..........................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................TTTT-----G------C------------CATTGCACGAAAATCTAT........................................................................................................................................2430.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................TGCAT--GGCTCCGTTTCTTCTTATGT--..............................................................................................................................................................................................2540.5020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................TTTCTTCTTATGT--TC-TGTATTTT-----G------C------------..........................................................................................................................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................GTTTCTTCTTATGT--TC-TGTATTTT-----G------C------------C.........................................................................................................................................................2720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................TCTTCTTATGT--TC-TGTATTTT-----G------C------------CATT......................................................................................................................................................2720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................TCTTCTTATGT--TC-TGTATTTT-----G------C------------C.........................................................................................................................................................2420.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................TCCGTTTCTTCTTATGT--TC-TGTATTT....................................................................................................................................................................................2650.4020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................TTT-----G------C------------CATTGCACGAAAATCTATCAATG...................................................................................................................................2830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................TTCTTATGT--TC-TGTATTTT-----G------C------------..........................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................TCTTATGT--TC-TGTATTTT-----G------C------------CATTGCAC..................................................................................................................................................2830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................CTTATGT--TC-TGTATTTT-----G------C------------CATTGCACG.................................................................................................................................................2830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................CCCCTGCAT--GGCTCCGTTTCTTCTTATG.................................................................................................................................................................................................2840.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................TCCGTTTCTTCTTATGT--TC-TGTATTTT-----..............................................................................................................................................................................2740.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................TATGT--TC-TGTATTTT-----G------C------------CATTGCACGA................................................................................................................................................2740.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................CAT--GGCTCCGTTTCTTCTTATGT--TC-...........................................................................................................................................................................................2540.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
....................................................................................................................................T--GGCTCCGTTTCTTCTTATGT--TC-TGTA.......................................................................................................................................................................................2740.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................T--GGCTCCGTTTCTTCTTATGT--TC-TGTAT......................................................................................................................................................................................2840.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................CGTTTCTTCTTATGT--TC-TGTATTT....................................................................................................................................................................................2450.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................TCCGTTTCTTCTTATGT--TC-TGTATT.....................................................................................................................................................................................2550.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................TGCAT--GGCTCCGTTTCTTCTT....................................................................................................................................................................................................2150.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................CGTTTCTTCTTATGT--TC-TGT........................................................................................................................................................................................2060.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................TTGCACGAAAATCTATCAATG...................................................................................................................................2180.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................TTTTTTG-TTCACTG------AT-------------------A--T-T--....................................................................19100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
T----------------------------------------------------------------------------------------------ATGTACACTGCGCGTTATCAAATTAGTGCCCCCTGCAT--CGCTCCGTTTCTTCTTATGT--TT-TGTATTTT-----G------C------------CATTGCGCGAAAATCTATGCATTT---T----ATTGTTTTTGG-TTCACTG------AT---------------------AT----CCCCTCTCTCTTTGAGGATAAAAAAGAGGTCCTCAGAAGAACCGT-----TATCTTTTTAATTCTGCTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................................................................................................................................................................................................................TAAAAAAGAGGTCCTCAGAAGAACCGT-----..................2713.00300000000003000000
..................................................................................................................................................................................................................................................................................................................GGTCCTCAGAAGAACCGT-----..................1811.00100000000001000000
...............................................................................................................................................................................................................................................CACTG------AT---------------------AT----CCCCTCTCTCTTTGAGGA..................................................2750.20100000001000000000
...................................................................................................................................................................................................................................................................................................TGAGGATAAAAAAGAG........................................1660.17100000000001000000
droSec2
GCAA--------------------------------------------------------------------------TGGGT-CCTGATAA--AGAATACACTGCGCGTCAGCAGATTATCGCCTCCCTGCA--------------TCTTATGT--TT-TGTATTTT-----G------G------------CCTTGCACGAAAATCTATAAATTG---T----ATTTTTTTTTG-TTCTCTG------AT-------------------A--T----CCCCTATCTCTGTGAGGATAAAAAAGAAGGCCTGAGAAGAACCGT-----TATCGTTTTAATTCTGCTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
AT-----------------------------------------------------------------------------------------------GTACACTGCGTGTCATCAGATTAGCGGCTCCTGCTT--GTTTCCGTTTC---TTATGT--TC-TGTATTTT-----C------C------------ACTTGCACGAAAATTCGGCAATGT---T----GTAGATGTTTG-TACCCTG------AT-------------------A--T----T------------------------------------------------------------------CSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................................................................................................................................................................CGAAAATTCGGCAATGT---T----GTA.......................................................................................................................2111.00101000000000
............................................................................................................GTCATCAGATTAGCGGCTCCT..........................................................................................................................................................................................................................2111.00101000000000
droEre2
A-------------------------------------------------------------------------------------------------TACACTGCGCGTCATCAGATTAGCGCCCCT-GCAT--GGCTCCGTTTCTTCTTACGT--TC-TGTATTTT-----G------C------------CATTGCACAAAAATTCTTCCATGT---T----GT---GTTTTG-TTTACTG------ATG-----------TAAGCA---TCACTCTCTCTCTCCCTTTGACAATAAAAAAGAGGTCGTAAGAAGAACCAT-----TATCTTGTAAATTCTGCCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/18/2015 at 01:41 AM