ID:

dmo_1959

 Coordinate:

scaffold_6540:15653827-15653977 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-30.6 -30.5 -30.3 -30.2

Flybase annnotation

exon [dmoj_GLEANR_9802:5]; CDS [Dmoj\GI24675-cds]; intron [Dmoj\GI24675-in]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+
Homo6DNAhAT-Pegasus+
Hoana1DNAhAT-hobo-
mature
  1. scaffold_1655:4556-4576 +
  2. scaffold_1657:3556-3576 +
  3. scaffold_3709:887-907 +
  4. scaffold_4543:4408-4428 +
  5. scaffold_5792:2165-2185 +
  6. scaffold_6473:16275418-16275438 +
  7. scaffold_6482:601838-601858 +
  8. scaffold_6482:712696-712716 +
  9. scaffold_6484:3179-3199 -
  10. scaffold_6498:2163246-2163266 +
  11. scaffold_6498:2193807-2193827 +
  12. scaffold_6498:3161946-3161966 +
  13. scaffold_6500:6467275-6467295 +
  14. scaffold_6500:11320972-11320992 +
  15. dmo_1706  scaffold_6500:29948353-29948373 +
  16. scaffold_6500:30677228-30677248 +
  17. scaffold_6540:445093-445113 +
  18. dmo_1959  scaffold_6540:15653933-15653953 +
  19. scaffold_6540:31563003-31563023 +
  20. scaffold_6541:1618350-1618370 +
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AGCGCGGTCATCCAAAGGAATCTGGAAACGGGACGCCTCGAATGGCCAGAGTAGGTGATCATCAACATGTTGCACATTTAATTTGAAATATTTTATATATTTTATGTAATATCATATTTTTATTCCCTGAACCCATTGAAAATGGGAAATCAGGGTATAATGGTTTTGTTAAAATGTATGTAACTGGCAGAAGGAGGCGTGGCAGACCCCATAAAGTATATATGTATATTCTTGATCAGGGTGGCGAGCTG
**************************************************.((...............(((((.....................((((((((((..(((.((((.....((((.((((((.((((((...))))))...)))))).)))))))).))).)))))))))))))))...............))************************************************** 		Read size # Mismatch Hit Count Total Norm Total V110
male body		 M046
female body
 V056
head
 V049
head
 M060
embryo
...................................................TAGGCGATCATCATCATGT..................................................................................................................................................................................... 19 2 3 13.00 39 22 16 1 0 0
...................................................TAGGCGATCATCATCATGTT.................................................................................................................................................................................... 20 2 2 12.00 24 14 9 0 1 0
...................................................TAGGCGATCATCATCATGTTT................................................................................................................................................................................... 21 3 3 3.67 11 5 6 0 0 0
....................................................AGGCGATCATCATCATGTT.................................................................................................................................................................................... 19 2 4 3.00 12 5 7 0 0 0
....................................................AGGCGATCATCATCATGT..................................................................................................................................................................................... 18 2 5 1.40 7 1 3 2 1 0
..........................................TGGCCATAGTAGGTGATA............................................................................................................................................................................................... 18 2 2 0.50 1 0 1 0 0 0
.........................................TTGGCCATAGTAGGTGAT................................................................................................................................................................................................ 18 2 3 0.33 1 0 0 1 0 0
....................................................................................................................................................................................................................................TTCTTGATCAGGGTGGCGAGC.. 21 0 3 0.33 1 0 0 1 0 0
....................................................AGGCGATCATCATCATGTTT................................................................................................................................................................................... 20 3 11 0.27 3 1 2 0 0 0
...................................................TAGGCGATCATCATCATG...................................................................................................................................................................................... 18 2 9 0.22 2 0 2 0 0 0
...............................................AGAGTAGGTCATCGTCAAGA........................................................................................................................................................................................ 20 3 6 0.17 1 0 0 0 0 1
....................................................................................................................................................................................................................................TTCTTGATCGGGGTGGCGAGC.. 21 1 6 0.17 1 0 1 0 0 0
....................................................................................................................................................................................TAACTGGCAGAAGGAGGCGTGG................................................. 22 0 7 0.14 1 0 1 0 0 0
.........................................................................................................................................................................................................................................GATCAGGGTGGCGAGAT. 17 1 8 0.13 1 0 0 1 0 0
................................................GAGGAGGTGTTCATCAAC......................................................................................................................................................................................... 18 2 10 0.10 1 0 0 0 1 0
................................................GAGTAGGTCATCGTCAAGA........................................................................................................................................................................................ 19 3 13 0.08 1 0 0 0 0 1
............................................................................................................................................................ATAATGGTTTTGTTAAAATGT.......................................................................... 21 0 20 0.05 1 0 1 0 0 0
..............................................................................................................................................................CATGGTTTTGTTAAAATGTATGTA..................................................................... 24 1 20 0.05 1 0 1 0 0 0
.......................................................................................................................TTATTCCCTGAACCCATTGTAT.............................................................................................................. 22 2 20 0.05 1 0 1 0 0 0
..............................................................................................................................................................AATGGTTTTGTTAAAATGTATGTAAC................................................................... 26 0 20 0.05 1 0 1 0 0 0

Anti-sense strand reads

TCGCGCCAGTAGGTTTCCTTAGACCTTTGCCCTGCGGAGCTTACCGGTCTCATCCACTAGTAGTTGTACAACGTGTAAATTAAACTTTATAAAATATATAAAATACATTATAGTATAAAAATAAGGGACTTGGGTAACTTTTACCCTTTAGTCCCATATTACCAAAACAATTTTACATACATTGACCGTCTTCCTCCGCACCGTCTGGGGTATTTCATATATACATATAAGAACTAGTCCCACCGCTCGAC
**************************************************.((...............(((((.....................((((((((((..(((.((((.....((((.((((((.((((((...))))))...)))))).)))))))).))).)))))))))))))))...............))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V110
male body		 V056
head
 M060
embryo
 V049
head
....................................................TCCGCTAGTAGTAGTACAA.................................................................................................................................................................................... 19 2 4 8.50 34 29 2 1 0 2
...................................................ATCCGCTAGTAGTAGTACAAA................................................................................................................................................................................... 21 3 3 3.00 9 8 1 0 0 0
...................................................ATCCGCTAGTAGTAGTACAA.................................................................................................................................................................................... 20 2 2 1.50 3 2 1 0 0 0
....................................................TCCGCTAGTAGTAGTACAAC................................................................................................................................................................................... 20 2 1 1.00 1 1 0 0 0 0
..................................................CATCCGCTAGTAGTAGTACAA.................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0
...................................................ATCCGCTAGTAGTAGTACA..................................................................................................................................................................................... 19 2 3 0.67 2 2 0 0 0 0
...........................TGCCCTGGTGAGCTTACTGG............................................................................................................................................................................................................ 20 3 3 0.67 2 1 1 0 0 0
....................................................TCCGCTAGTAGTAGTACAAA................................................................................................................................................................................... 20 3 11 0.64 7 7 0 0 0 0
....................................................TCCGCTAGTAGTAGTACA..................................................................................................................................................................................... 18 2 5 0.60 3 3 0 0 0 0
.................................................TAATCCGCTAGTAGTAGTACAA.................................................................................................................................................................................... 22 3 2 0.50 1 0 0 1 0 0
...................................................................................................................................................................................................CCGCACCGTCTGGGGTATTTCATAT............................... 25 0 20 0.35 7 0 0 0 7 0
...........................................................................................................................AGGGACTTGGGTAACTTTTACCCTTTAGT................................................................................................... 29 0 10 0.10 1 1 0 0 0 0
........................................................................................................................................................CCCATATTACCAAAACAATTTTACATAC....................................................................... 28 0 20 0.10 2 0 0 0 2 0
........................................................................................................................................................................................ACCGTCTTCCTCCGCACCGTCT............................................. 22 0 16 0.06 1 1 0 0 0 0
......................................................................................................................................................................................................................CCATATATGCATATAAGAACTAGTCC........... 26 2 20 0.05 1 0 0 0 1 0
...................................................................................................................................................................................................CCGCACCGTCTGGGGTATTTCA.................................. 22 0 20 0.05 1 1 0 0 0 0
..............................................................................................................................................................TTACCAAAACAATTTTACATACAGT.................................................................... 25 1 20 0.05 1 0 0 0 1 0
.................................................................................................................................................................CCAAAACAATTTTACATACAT..................................................................... 21 0 20 0.05 1 1 0 0 0 0
...................................................................................................................................................................................................CCGCACCGTCTGGGGTATTTCTTAT............................... 25 1 20 0.05 1 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6540:15653777-15654027 + dmo_1959 AGCG---CGG------TCATCCAAAGGAATCTGGAAACGGGACGCCTC-----------------------------------------------------G----------AATGGCCAGAGTA-----------GGTGAT-CATCAACATG--TTGCACATTTAATTTGAAATATT-------------------------------------------------------------------------TTATATATT----------------------------------------------------------------------------------------------------------TTA--------------------------------------------T-------------G--TA-------------------ATATCAT-ATTTTTATTCCCTGAACCCATTGAAAATGGGAAATCAGGGTATAATGGTTTTGTTAAAA-------TGTATGTAACTGGCAGAAGGAGGCGTGGCAGACCCCATAAAGTATATATG-TATAT-TCTTGATCAGGGTGGCGAGCTG
droVir3 scaffold_9901:1742-1988 - TGGA---AAA---------------GCAGGCCAG----------------AAG----------------------------------------------TCGAACATTATTGAGAG-----------TTCTCAGTTGGGAGT-GATTAACGTG--ATTAA--------------------------------------------------------------------------CTTGATCTCCAAGATTTTTATAT--------------------------------------------------AT-------------------TTT---TGCACTT-----------------------------------------------------------------------------------------TAA-------------------T-CCTG-CTTTTTATACCCTAAACCCATTGAAAATGGG-TATAGGGGTATATTGTATTTGTGCAAAATATAAATGTATATAACAGGCAGAAGGAAGCATCTCCGACCCCATAAAGTATATA-----AAT-TCTTAATCAGCATCAATAGCCG
droGri2 scaffold_15110:24412790-24412975 - CACC---AACA----------------AATAA----------------------------------------TATGATAATATTGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGATAA-------------------------------------------------------------------------TAC-------------------ATATATAATATCGC-ATTTTTATACCCAGAATCCATTAAAAATGGG-TCAAAGGGTATAATGGTTTTGTGATAA-------TGTATGTAACAGGCAGAAGGAAGCATCTCCAACCCCATAAAGTATATATG-TATAT-TCTTGATCAGGGTCAACAGCCG
droWil2 scf2_1100000004756:11135-11363 + GGCGTCTTGC------TGATCGGCATGAATTT-----------------------------------------------------T-----------AAAACGA-----------------------TTCCCGCTTAGGGGT-G--TAACGGGT--------------------------------------------------------GTT------------AACGAGTAGCTCAT----------------------------------------------------------------------------------TTGGTGTGGTTAT---TTTCGG----------------------------------------------------------------------A-------------G--TAC-------------------T-GCCA-CTTTTTATACCATACACTCATA------GGG-TGAAATGGTATATTAAAGTCGCCAAAA-------TGTATGTAACAGGCAGAAGGAAGCTTCTCCGACCCCATAAAGTATATA-----TAT-TCTTGATCAGGATCAACAGCCG
dp5 Unknown_group_278:10873-11086 + GCTGT------------CTTTCCAGTTAAGCTGGAAGCAAGACAGCGCAGTAGTTGTTTTTATACCCGATACTCAAATTG-----AGTAGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---G-----------------------------------------------------------------------------------------------------------------------------------------------------TATATTAG-------------------ATGT------GTGA-TTTTTTATACCCGATACTCAAA----ATGAG-TATATGGGTATATTAGATTTGTGGGTAAAATGGATATGTTTAACGTCCGGAAGGAAGCGTTTCCAACCCCATAAAGTATATA-----TAT-TCTTGATCAG------------
droPer2 scaffold_286:4829-5066 - TTCA---AAG----------------GAATCC----------------------------------------TATGATTCTC-------------------T----------TGTAATAAGAGGA-----------AGTGAA-ATTCAAC----------------------------CAATCAAAAGTAAAACA--GAAACAT-------------------------------T---------------TAAAATA---AATA----------------------------------------------------------------------------------------GTGGTT----------------------------------------------------------------AA-------------------ATGT----G-TTATATTTATTATACCCGATACTCAAA----ATGAG-TATTGGGGTATATTAGATTTGTGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCTATAAAGTATATA-----TAT-TCTTGATCAGCATCAATAGCCG
droAna3 scaffold_13099:2593353-2593587 - TCTG-----G------------------------AAATGGCACAACCT-----------------------------------------------------T----------AACAGCAAGGGTA-----------TATTAA-CTTCAGC-----------------------------------------------------------TTCG------------------------------------------------------------------------CGCGAAGT--------TAGCTTTC-------------------CTT---TCTT---------------GTTTTGTA----------------------------------------------------AAA-TTTTT---CAGTTTTAAAATGTGGGCCATG-ATGAGAATAG-ATTTTTATACCCTT-----GCA------G-------AGTGTATTATGATTTTGGTCAAA-------AGTGTGCAACGCAGTGAAGGAGTTATCTCCGACCCTATAAAGTATATA-----TAT-TCTTGATCAGGATCACCTCCTG
droBip1 scf7180000396580:526484-526702 - AAAC---TGA------------------------AAACTGAACAACCAA-G-----------------------------------------ATGCTCAA---------------------TGGAAGTC---CTTTGAGCAT-G--AAATGGCTTTTCCACATTTCATTCCAAGTATT-------------------------------------------------------------------------TTATTT------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTATGCG--TAT-------------------G-ACCC-ATTTTTATACCCTT-----GC-------------AGAGGGTATTATAATTTTGGTCAAA-------AGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATATA-----TAT-TCTTGATCAGGATCACCTCCTG
droKik1 scf7180000301684:18687-18906 + ATGT---CGG-------------A-ACGGGCC-----------GGATC-----------------------------------------------------GGA----------CGACTATATTA----------TAGAG------CTGC----------------------------CATACA-----------AATGTTCGATTAATTTTTAGAAAAAAAATT---ATA-------T------------------CTT----------------------------------------------------------------------G---TCTG---------------GTTTTCAA----------------------------------------------------------------------------------------TATTTTTGC-ATCATTATACCCTT--------------------GCAGGGTATTATAATTTCAGTCAGA-------AGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCAATAAAGTATATA-----TAT-TCTTGATCAGCATCAACAGCCG
droFic1 scf7180000449738:5446-5649 + AATGGCTCGA------GCA--------T-------------------------------------------------------------------------------------------------------------ATG---------GTGT--TAAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------GTTCGTCAGGAACACTTAT---CTTGAAAGATGAAA------------TGTTCCTAGCA---------------------------------------------TATGAA--------------------------AAGTTAA-ATTGTTATACCCTT-----GCA------GAG-CAAAAGGGTATTATAATTTCAGTCAGA-------AGTTTGCAACGCAGTGAAGGAGACACCTCAGACCCCATAAAGTATATA-----TAT-TCTTGATCAGCATCACGATCAG
droEle1 scf7180000491271:32407-32615 + TGGA---AATG----------------------------GGACTCCCT---GT-------------------TCTAAAAATATTAT-----------TACAAAA------------------------------------------------------------------------------------------------------------------------------------------------T------------------------------------------------------------------TTTTGTATGGTACCATTTT---TTTTAAAGCTTAAATAACGTTT-------TCA--------------------------------------------T---------GTCAG--------------------------TTTT-ATTTTTATACCCTT-----GC-------------AGAGGGTATTATAATTTCAGTCAGA-------AGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTATATA-----TAT-TCTTGATCAGCATCACTAGTAG
droRho1 scf7180000760178:8362-8572 - TAAA---AATAGGACGACTCCCAAAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAATCGATAAGCTTAT------------------------------------------------------------------------CGAAAAAT--------TTACAAAC-------------------CTT---TGTTTTTTAAATTA-------------------------------------------------------------------------------------------------------AAATAAT-ATTTTTATACCCGTTACTCGTA------GAG-TAAAAGGGTATATTGTATTCGTGCAAA-------AGTATGTAACAGGTAGAAGGAAGCGTTTCCGACCCTATAAAGTATATATG-TATAT-TCTTGTTCAGGATCACTAGCCG
droBia1 scf7180000299547:602-816 + AGCT---CAG------TCATT-AAAAAAAT-T-G---------------------------------------------------AATCGGCACGTAT--CGAC----------C------------------------------------------------------------------------------------------------------CACAT-TTGACGAATGTTTTGTTTTT------------------GATA----------------------------------------------------------------------------------------ATTGTT----------------------------------------------------------ATAATTGTGTG--------------------------TGAG-TTTATTTTACCCATTACTTGTA------GAG-TTAAAAAGTATACTAGATTCGTCGGAA-------AGTATGTAACAGGTAGAAAGAATCGTTTCCGACACCGTAAAGTAAAGA-----TAT-TCTTGATCAGGATTACTAGGCG
droTak1 scf7180000415192:33899-34133 - GCTGC------------CTCCTAAAGGAATCCAG----------------AAT-------------------------------------GCAGGC---------GGAATGCA------------------------------------------------------------------------------------GAATCGAT-----------------------AAATACTATG-------------------------T---GTACATTAT--AAATTCGCGCAGCC--------------------------------------T---------------------------------------------------------TATTATTATTA--------------T--TATTATTATGAG--------------------------TTTC-CTTTTTATACCCGTTACTCGTA------GAG-TAAAAGGGTATACTAGATTCGTGCAAA-------AGTATGTAACAGCTAGAAGGAAGCGTTTCCGACCCCATAAAGTATATA-----TAT-TCTTGATCAGGGTCACTAGCCG
droEug1 scf7180000409804:1460551-1460737 + TGGC---CAGA------GA--------AT-------------------------------------------------------------GCACGC---------A---------------------------------------GA-------------------------------------------------AAAATGGATTTATTTTTGACTTAAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATTAA-------------------TT------T-TTTG-ATGTTTATACCCGTTACTCGTA------GAG-TAAAAGGGTATACTAGATTCGTTGAAA-------AGTATGTAACAGATAGAAGGAAGCTTTTGCGACCCTATAAAGTATATA-----TAT-TCTTGATCAGGATCAATAGCGA
dm3 chrX:92754-92950 + GAAC---AAGT----------------------------GAA-----------------------------------------------------------------------------------------------------CTTAGTTCTA--TGACACATTTTATAAAAAATCTT-------------------------------------------------------------------------AC------------------------------------------------------------------------------------CTTTCAATATAAA-----------------------------------------------------------------------------A--TAT-------------------T-CCCC-ATTTTTATATCCGTTACTCGTA------GAG-TAAAAGGAAATACTAGATTCGTTGAAA-------AGTATGTAACAGGCAGAAGGAAGCGGATCTAACGATATAAAGTATATATG-TATAC-TCTTGACCAGGTTCGATAGGCG
droSim2 3l:22614883-22615052 + ATCC---CCG------ACA--------CA-------------------------------------------TCACATTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAGTATTA------------------TTTATTAT------TT-------------------T-ATTT-ATTTTTATACCCGTTACTCATA------GAC-CGAATGGGCTTATTAGATTTGTTGAAA-------AATATGTAACAGGTAGAAGGAAGCCTTTCCGACCATATAAAGTATATA-----TAT-TCTTGATCAGGGTCAATAGACA
droSec2 scaffold_18:1319533-1319766 - CATT---CTA--------------GCAATTCTAC---------AGCCAG-A-----------------------------------------ACGCTT--CG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTGGCTTAAAACGCATGGTTATCCTTGATATTTACATGATGCCATGTA--------------------------------------------------------TTTGTGGTATTTATGATGGTCTGT-------------T--TGC-------------------T-ACAA-ATGTTAATACCCGTTACTCGTA------GAG-TTAAAGGGTATAAAAGATTCGTTGAAA-------AGTATGTA----------TGAAGCGTTTCCGATTATATAAAGTATATATGGTACAT-TCTTGATCAGGATTAATAGGCG
droYak3 3R:17592456-17592695 - GCCT----GG------AAATCGAAAGAAAC-C-G---------------------------------------------------A-----------AACAGAACTTCAC-CAAA-----------------------AG--C----------------------------------------------------T--------------------------------ACA-------G------------------ACCATATAGGGTTCCTCACGGAAAT-----------------------------------------------------------------------------------------------TAAAGTAGCTTTCTGCTTGCTA--------------T-----------------G----------CCAT---TAAGTATAT-GTATTTATACCCCTTACTCGTA------GAG-CAAAAGGGTATACTAGATTCGTTGAAA-------GGTATGTAACAGGCAAAAGGAAGCGTTTTCGACCATATAAGGCATATATA-TTTGTTTTATATTCAGGGTTAATAACCG
droEre2 scaffold_4820:1732909-1733114 + GAAA---AAC-----------CAAAGAA-----A----------------A----------------------------------------------AAAAGAACAACAT-TTTA-----------------------AG--T----------------------------------------------------A--------------------------------ATA-------T------------------AATATGTA----------------------------------------------------------------------------------------ATGGTTAAAAATTTCCCATTAAACCAAA-------------------------------------------------------------------------GGAG-CTTTTTATTCCCGTTACTCGTA------GAG-TAAAAGGGTATACAAGGTTCGTTGAAA-------AGTATGTAACAGGCAGAAGGTAGCGTTTCCGACCATATAAAGTATATA-----TAT-TCTTGATCAGGATCAATAACCG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
AGCG---CGG------TCATCCAAAGGAATCTGGAAACGGGACGCCTC-----------------------------------------------------G----------AATGGCCAGAGTA-----------GGTGAT-CATCAACATG--TTGCACATTTAATTTGAAATATT-------------------------------------------------------------------------TTATATATT----------------------------------------------------------------------------------------------------------TTA--------------------------------------------T-------------G--TA-------------------ATATCAT-ATTTTTATTCCCTGAACCCATTGAAAATGGGAAATCAGGGTATAATGGTTTTGTTAAAA-------TGTATGTAACTGGCAGAAGGAGGCGTGGCAGACCCCATAAAGTATATATG-TATAT-TCTTGATCAGGGTGGCGAGCTGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TCTTGATCAGGGTGGCGAGC..2130.331000100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACTGGCAGAAGGAGGCGTGG...................................................2270.141100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGGTTTTGTTAAAA-------TGT............................................................................21200.051100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGTTTTGTTAAAA-------TGTATGTAAC.....................................................................26200.051100000
droVir3
TGGA---AAA---------------GCAGGCCAG----------------AAG----------------------------------------------TCGAACATTATTGAGAG-----------TTCTCAGTTGGGAGT-GATTAACGTG--ATTAA--------------------------------------------------------------------------CTTGATCTCCAAGATTTTTATAT--------------------------------------------------AT-------------------TTT---TGCACTT-----------------------------------------------------------------------------------------TAA-------------------T-CCTG-CTTTTTATACCCTAAACCCATTGAAAATGGG-TATAGGGGTATATTGTATTTGTGCAAAATATAAATGTATATAACAGGCAGAAGGAAGCATCTCCGACCCCATAAAGTATATA-----AAT-TCTTAATCAGCATCAATAGCCGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-CCTG-CTTTTTATACCCTAAACCCA.............................................................................................................................2511.001000000000000000000000000001000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................TTTTATAT--------------------------------------------------AT-------------------TTT---TGCACTT-----------------------------------------------------------------------------------------TA............................................................................................................................................................................2230.331000010000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTGTATTTGTGCAAAATATA.................................................................................2450.201000000000000000000000000000000100000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACAGGCAGAAGGAAGCATCTCC.................................................25200.102000000000000000000000000000000000000000000000000000000000000002
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGAAGGAAGCATCTCCGAC..............................................22200.102000000000000000000000000000020000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCTCCGACCCCATAAAGTAT..................................23200.051000000000000000001000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGG-TATAGGGGTATATT...................................................................................................18200.051000010000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGGTATATTGTATTTGTGC.........................................................................................21200.051000000000000000000000000000000000000010000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCAGAAGGAAGCATCTC..................................................19200.051000000010000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACAGGCAGAAGGAAGCAT.....................................................21200.051000000000000000000100000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGACCCCATAAAGTATATA-----AAT-......................24200.051000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGG-TATAGGGGTATATT...................................................................................................20200.051000000000000000100000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAACAGGCAGAAGGAAGCATC....................................................23200.051000000000000000000000000000000100000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCAGAAGGAAGCATCTCCGA...............................................22200.051000000000000000000000000000001000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGAAGGAAGCATCTCCGACCCC...........................................25200.051000000000000000000000000000000000010000000000000000000000000000
droGri2
CACC---AACA----------------AATAA----------------------------------------TATGATAATATTGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGATAA-------------------------------------------------------------------------TAC-------------------ATATATAATATCGC-ATTTTTATACCCAGAATCCATTAAAAATGGG-TCAAAGGGTATAATGGTTTTGTGATAA-------TGTATGTAACAGGCAGAAGGAAGCATCTCCAACCCCATAAAGTATATATG-TATAT-TCTTGATCAGGGTCAACAGCCGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAACAGGCAGAAGGAAGC.......................................................21200.05110
droWil2
GGCGTCTTGC------TGATCGGCATGAATTT-----------------------------------------------------T-----------AAAACGA-----------------------TTCCCGCTTAGGGGT-G--TAACGGGT--------------------------------------------------------GTT------------AACGAGTAGCTCAT----------------------------------------------------------------------------------TTGGTGTGGTTAT---TTTCGG----------------------------------------------------------------------A-------------G--TAC-------------------T-GCCA-CTTTTTATACCATACACTCATA------GGG-TGAAATGGTATATTAAAGTCGCCAAAA-------TGTATGTAACAGGCAGAAGGAAGCTTCTCCGACCCCATAAAGTATATA-----TAT-TCTTGATCAGGATCAACAGCCGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGCAGAAGGAAGCTTC....................................................21200.10200200
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGATCAGGATCAACAGCC.20200.10202000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAAGCT......................................................21200.10202000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACCATACACTCATA------GGG-.................................................................................................................20160.06101000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAAGCTTCTCCGACCCCA..........................................21200.05101000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATGTAACAGGCAGAAGGAAGCTTCT...................................................28200.05100010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACAGGCAGAAGGAAGCTTC....................................................22200.05100010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----TAT-TCTTGATCAGGATCAACAGCC.25200.05101000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTATATTAAAGTCGCCAAAA-------TG.............................................................................24200.05101000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATA------GGG-TGAAATGGTATATTA..................................................................................................21200.05101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTCGCCAAAA-------TGTATGT........................................................................20200.05101000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAACAGGCAGAAGGAAGCTTCT...................................................25200.05100010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGGATCAACAGCC.21200.05100010
dp5
GCTGT------------CTTTCCAGTTAAGCTGGAAGCAAGACAGCGCAGTAGTTGTTTTTATACCCGATACTCAAATTG-----AGTAGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---G-----------------------------------------------------------------------------------------------------------------------------------------------------TATATTAG-------------------ATGT------GTGA-TTTTTTATACCCGATACTCAAA----ATGAG-TATATGGGTATATTAGATTTGTGGGTAAAATGGATATGTTTAACGTCCGGAAGGAAGCGTTTCCAACCCCATAAAGTATATA-----TAT-TCTTGATCAG------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACCCGATACTCAAA----ATGAG-T................................................................................................................23200.3060600000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGTATATTAGATTTGTGG.........................................................................................2160.1710000001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTATACCCGATACTCAAA----ATG....................................................................................................................24200.1020200000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAAGCGTTTCCAACCCCATAA.......................................23100.1010000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCGTTTCCAACCCCATAAAGTAC..................................26110.0910000000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATACCCGATACTCAAA----A......................................................................................................................21200.0510100000000
droPer2
TTCA---AAG----------------GAATCC----------------------------------------TATGATTCTC-------------------T----------TGTAATAAGAGGA-----------AGTGAA-ATTCAAC----------------------------CAATCAAAAGTAAAACA--GAAACAT-------------------------------T---------------TAAAATA---AATA----------------------------------------------------------------------------------------GTGGTT----------------------------------------------------------------AA-------------------ATGT----G-TTATATTTATTATACCCGATACTCAAA----ATGAG-TATTGGGGTATATTAGATTTGTGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCTATAAAGTATATA-----TAT-TCTTGATCAGCATCAATAGCCGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................................................................................................................................................................................................TAAAATA---AATA----------------------------------------------------------------------------------------GTGGTT----------------------------------------------------------------AA-------------------ATGT----G-T.....................................................................................................................................................25200.255050000
...............................................................................................................................................ATTCAAC----------------------------CAATCAAAAGTAAAACA--GAAAC..................................................................................................................................................................................................................................................................................................................................................................................................................2980.131010000
............................................................................................................................................................................................TAAAACA--GAAACAT-------------------------------T---------------TAAAATA---AATA----------------------------------------------------------------------------------------...........................................................................................................................................................................................................................................................2680.131010000
....................................................................................................................................................AC----------------------------CAATCAAAAGTAAAACA--GAAACAT-------------------------------T---------------.................................................................................................................................................................................................................................................................................................................................................................2780.131010000
................................................................................................................................................TTCAAC----------------------------CAATCAAAAGTAAAACA--GAAACA.................................................................................................................................................................................................................................................................................................................................................................................................................2980.131010000
...........................................................................................................................................................................................................................................T---------------TAAAATA---AATA----------------------------------------------------------------------------------------GTGGTT----------------------------------------------------------------AA-------------------ATGT----G-......................................................................................................................................................25200.102020000
................................................................................................................................................................................................................................................................TA---AATA----------------------------------------------------------------------------------------GTGGTT----------------------------------------------------------------AA-------------------ATGT----G-TTATATT...............................................................................................................................................26200.102020000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTATATTAGATTTGTG..........................................................................................19200.051010000
...........................................................................................................................................................................................................................................................TAAAATA---AATA----------------------------------------------------------------------------------------GTGGTT----------------------------------------------------------------AA-------------------ATGT----G-TTAT..................................................................................................................................................28200.051010000
.............................................................................................................................................................................................................................................................AAATA---AATA----------------------------------------------------------------------------------------GTGGTT----------------------------------------------------------------AA-------------------ATG.............................................................................................................................................................20200.051010000
.............................................................................................................................................A-ATTCAAC----------------------------CAATCAAAAGTAAAACA--GT.....................................................................................................................................................................................................................................................................................................................................................................................................................27200.051010000
...........................................................................................................................................................................................................................................................TAAAATA---AATA----------------------------------------------------------------------------------------GTGGTT----------------------------------------------------------------AA-------------------ATGT----G-TTA...................................................................................................................................................27200.051010000
...........................................................................................................................................................................................................................................................TAAAATA---AATA----------------------------------------------------------------------------------------GTGGTT----------------------------------------------------------------AA-------------------ATGT----G-......................................................................................................................................................24200.051010000
.....................................................................................................................TAAGAGGA-----------AGTGAA-ATTCAAC----------------------------CAATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051010000
................................................................................................................TGTAATAAGAGGA-----------AGTGAA-A............................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051010000
.............................................................................................................................................A-ATTCAAC----------------------------CAATCAAAAGTAAAACA--G......................................................................................................................................................................................................................................................................................................................................................................................................................26200.051001000
...........................................................................................................................................................................................................T-------------------------------T---------------TAAAATA---AATA----------------------------------------------------------------------------------------GTGGTT----------------------------------------------------------------AA-------------------ATGT----G-T.....................................................................................................................................................27200.051010000
.............................................................................................................................................................................................................................................................AAATA---AATA----------------------------------------------------------------------------------------GTGGTT----------------------------------------------------------------AA-------------------ATGT----G-......................................................................................................................................................22200.051010000
...........................................................................................................................................................................................................T-------------------------------T---------------TAAAATA---AATA----------------------------------------------------------------------------------------GTGGTT----------------------------------------------------------------AA-------------------ATGT----G-TT....................................................................................................................................................28200.051000001
............................................................................................................................................................................................................................................................AAAATA---AATA----------------------------------------------------------------------------------------GTGGTT----------------------------------------------------------------AA-------------------ATG.............................................................................................................................................................21200.051010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTAAAAGTGGATGTGTGTAACG....................................................................25200.051000001
droAna3
TCTG-----G------------------------AAATGGCACAACCT-----------------------------------------------------T----------AACAGCAAGGGTA-----------TATTAA-CTTCAGC-----------------------------------------------------------TTCG------------------------------------------------------------------------CGCGAAGT--------TAGCTTTC-------------------CTT---TCTT---------------GTTTTGTA----------------------------------------------------AAA-TTTTT---CAGTTTTAAAATGTGGGCCATG-ATGAGAATAG-ATTTTTATACCCTT-----GCA------G-------AGTGTATTATGATTTTGGTCAAA-------AGTGTGCAACGCAGTGAAGGAGTTATCTCCGACCCTATAAAGTATATA-----TAT-TCTTGATCAGGATCACCTCCTGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCAACGCAGTGAAGGAGTTATC....................................................2511.001001000
................................................................................................................................................TTCAGC-----------------------------------------------------------TTCG------------------------------------------------------------------------CGCGAAGT--------T..............................................................................................................................................................................................................................................................................................................1911.001100000
...................................................................................................................................................................................................................................................................................................GT--------TAGCTTTC-------------------CTT---TCTT---------------GTTTTGTA----------------------------------------------------AA.............................................................................................................................................................................................2720.501100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGCAACGCAGTGAAGGAGTT.......................................................2320.501000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-------AGTGTATTATGATTTTGGTC.........................................................................................2130.331000001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTGAAGGAGTTATCTCCGACCC............................................2540.251000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTTGGTCAAA-------AGTGTGCA.......................................................................21200.204000004
.............................................................................................................................................................................................................................................................................................CGCGAAGT--------TAGCTTTC-------------------CTT---TCTT---------------GT.........................................................................................................................................................................................................................................................2560.171100000
..............................................................................................................................................................................................................................................................................................GCGAAGT--------TAGCTTTC-------------------CTT---TCTT---------------GTT........................................................................................................................................................................................................................................................2560.171010000
.............................................................................................................................................................................................................................................................................................CGCGAAGT--------TAGCTTTC-------------------CTT---TC............................................................................................................................................................................................................................................................................2180.131010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTTTGGTCAAA-------AGTGTGCAAC.....................................................................24200.102020000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AGTGTGCAACGCAGTGAAGGAGT........................................................24200.102100010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA-------AGTGTGCAACGCAGTGAAGGAGT........................................................26200.051000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAACGCAGTGAAGGAGT........................................................19200.051000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGATTTTGGTCAAA-------AGTG...........................................................................21200.051100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGCAACGCAGTGAAGGAGT........................................................22200.051100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATTTTGGTCAAA-------AGTGT..........................................................................20200.051000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCAACGCAGTGAAGGAGT........................................................21200.051100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGATTTTGGTCAAA-------AGTGTGCAAC.....................................................................28200.051000010
droBip1
AAAC---TGA------------------------AAACTGAACAACCAA-G-----------------------------------------ATGCTCAA---------------------TGGAAGTC---CTTTGAGCAT-G--AAATGGCTTTTCCACATTTCATTCCAAGTATT-------------------------------------------------------------------------TTATTT------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTATGCG--TAT-------------------G-ACCC-ATTTTTATACCCTT-----GC-------------AGAGGGTATTATAATTTTGGTCAAA-------AGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATATA-----TAT-TCTTGATCAGGATCACCTCCTGSizeHit CountTotal NormTotal
No Reads
droKik1
ATGT---CGG-------------A-ACGGGCC-----------GGATC-----------------------------------------------------GGA----------CGACTATATTA----------TAGAG------CTGC----------------------------CATACA-----------AATGTTCGATTAATTTTTAGAAAAAAAATT---ATA-------T------------------CTT----------------------------------------------------------------------G---TCTG---------------GTTTTCAA----------------------------------------------------------------------------------------TATTTTTGC-ATCATTATACCCTT--------------------GCAGGGTATTATAATTTCAGTCAGA-------AGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCAATAAAGTATATA-----TAT-TCTTGATCAGCATCAACAGCCGSizeHit CountTotal NormTotal
No Reads
droFic1
AATGGCTCGA------GCA--------T-------------------------------------------------------------------------------------------------------------ATG---------GTGT--TAAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------GTTCGTCAGGAACACTTAT---CTTGAAAGATGAAA------------TGTTCCTAGCA---------------------------------------------TATGAA--------------------------AAGTTAA-ATTGTTATACCCTT-----GCA------GAG-CAAAAGGGTATTATAATTTCAGTCAGA-------AGTTTGCAACGCAGTGAAGGAGACACCTCAGACCCCATAAAGTATATA-----TAT-TCTTGATCAGCATCACGATCAGSizeHit CountTotal NormTotal
No Reads
droEle1
TGGA---AATG----------------------------GGACTCCCT---GT-------------------TCTAAAAATATTAT-----------TACAAAA------------------------------------------------------------------------------------------------------------------------------------------------T------------------------------------------------------------------TTTTGTATGGTACCATTTT---TTTTAAAGCTTAAATAACGTTT-------TCA--------------------------------------------T---------GTCAG--------------------------TTTT-ATTTTTATACCCTT-----GC-------------AGAGGGTATTATAATTTCAGTCAGA-------AGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTATATA-----TAT-TCTTGATCAGCATCACTAGTAGSizeHit CountTotal NormTotal
No Reads
droRho1
TAAA---AATAGGACGACTCCCAAAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAATCGATAAGCTTAT------------------------------------------------------------------------CGAAAAAT--------TTACAAAC-------------------CTT---TGTTTTTTAAATTA-------------------------------------------------------------------------------------------------------AAATAAT-ATTTTTATACCCGTTACTCGTA------GAG-TAAAAGGGTATATTGTATTCGTGCAAA-------AGTATGTAACAGGTAGAAGGAAGCGTTTCCGACCCTATAAAGTATATATG-TATAT-TCTTGTTCAGGATCACTAGCCGSizeHit CountTotal NormTotal
No Reads
droBia1
AGCT---CAG------TCATT-AAAAAAAT-T-G---------------------------------------------------AATCGGCACGTAT--CGAC----------C------------------------------------------------------------------------------------------------------CACAT-TTGACGAATGTTTTGTTTTT------------------GATA----------------------------------------------------------------------------------------ATTGTT----------------------------------------------------------ATAATTGTGTG--------------------------TGAG-TTTATTTTACCCATTACTTGTA------GAG-TTAAAAAGTATACTAGATTCGTCGGAA-------AGTATGTAACAGGTAGAAAGAATCGTTTCCGACACCGTAAAGTAAAGA-----TAT-TCTTGATCAGGATTACTAGGCGSizeHit CountTotal NormTotal
No Reads
droTak1
GCTGC------------CTCCTAAAGGAATCCAG----------------AAT-------------------------------------GCAGGC---------GGAATGCA------------------------------------------------------------------------------------GAATCGAT-----------------------AAATACTATG-------------------------T---GTACATTAT--AAATTCGCGCAGCC--------------------------------------T---------------------------------------------------------TATTATTATTA--------------T--TATTATTATGAG--------------------------TTTC-CTTTTTATACCCGTTACTCGTA------GAG-TAAAAGGGTATACTAGATTCGTGCAAA-------AGTATGTAACAGCTAGAAGGAAGCGTTTCCGACCCCATAAAGTATATA-----TAT-TCTTGATCAGGGTCACTAGCCGSizeHit CountTotal NormTotal
No Reads
droEug1
TGGC---CAGA------GA--------AT-------------------------------------------------------------GCACGC---------A---------------------------------------GA-------------------------------------------------AAAATGGATTTATTTTTGACTTAAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATTAA-------------------TT------T-TTTG-ATGTTTATACCCGTTACTCGTA------GAG-TAAAAGGGTATACTAGATTCGTTGAAA-------AGTATGTAACAGATAGAAGGAAGCTTTTGCGACCCTATAAAGTATATA-----TAT-TCTTGATCAGGATCAATAGCGASizeHit CountTotal NormTotal
No Reads
dm3
GAAC---AAGT----------------------------GAA-----------------------------------------------------------------------------------------------------CTTAGTTCTA--TGACACATTTTATAAAAAATCTT-------------------------------------------------------------------------AC------------------------------------------------------------------------------------CTTTCAATATAAA-----------------------------------------------------------------------------A--TAT-------------------T-CCCC-ATTTTTATATCCGTTACTCGTA------GAG-TAAAAGGAAATACTAGATTCGTTGAAA-------AGTATGTAACAGGCAGAAGGAAGCGGATCTAACGATATAAAGTATATATG-TATAC-TCTTGACCAGGTTCGATAGGCGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAAA-------AGTATGTAACAGGCAGA..............................................................262010.30206000000000000000000000100000000000000004000000000003002000011000000000000000000000070000000000000000000000000000030000000000000000000000000020000000872006024000000000000000000000000000000000320000000500000000001000000002000108000000000000010000000000000000000000000000000000000000000000011000000460500000000290000000000000041340000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAAA-------AGTATGTAACAGGC.................................................................24204.45890000000000000000000000000000000000000020000000000020000000010000000000000000000000000000000000000000000000000000000000000000000000000000000001116030000000000000000000000000000000000000000000010000000000000000000000050000000100000000000000000000000000000000000000000000000000000000000000010000015000000004000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAA-------AGTATGTAACAGGCAGAAGGA..........................................................27203.95790000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000110050000000000000000000000000000000000000120100000000030000000000000003801410000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAAA-------AGTATGTAACAGGCAGA..............................................................27203.0060000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000030080000000000000000000000000000000000000000100000000000000000020001000202000000000020200000000000000000000000000000000000000000000000000000213000000001900000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAAA-------AGTATGTAACAGGC.................................................................23202.7054000000000000000000000003000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200130020000000000000000000000000000000000000000010000000000000000000000000006001000000000000000000000000000000000000000000000000000000000000000000000002500000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAAA-------AGTATGTAACAGGCAGAA.............................................................27202.104200000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000010000000000000120000000000000009000000000000000000000000000000000000000000000000000000000000000010000051000000000016000000000000001010000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCCGTTACTCGTA------GAG-TAAAAGGA.........................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAA-------AGTATGTAACAGGCAGAA.............................................................24201.6533000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000001401500000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAA-------AGTATGTAACAGGCAGAAGG...........................................................26201.35270000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000001700000000000000000000000000000510000000000000000000000000000000000000000000000000000000000000000000000003000000800000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACTAGATTCGTTGAAA-------A..............................................................................2041.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAAA-------AGTATGTAACAGG..................................................................23201.20240000000000000000000000000000000000000000004000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000600000000000000000000000000000000000200005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000004000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAAA-------AGTATGTAACAGGCA................................................................24201.10220000000000000000000000000000000000000000000000000000000000000000000000000000000000060010000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000002000000008000000000000000200000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------------T-CCCC-ATTTTTATATCCG....................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTATATATG-TATAC-TCTTGACC..............2411.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAAATACTAGATTCGTTGAAA-------AG.............................................................................2521.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACCAGGTTCGATAGGCG2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AGTATGTAACAGGCAGAAGGAAGC.......................................................25201.00200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050400700000000000000000000001000000000000000000000000000000000000000000000000000000300000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGCAGAAGGAAGCGGATCTAACGA............................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
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droSim2
ATCC---CCG------ACA--------CA-------------------------------------------TCACATTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAGTATTA------------------TTTATTAT------TT-------------------T-ATTT-ATTTTTATACCCGTTACTCATA------GAC-CGAATGGGCTTATTAGATTTGTTGAAA-------AATATGTAACAGGTAGAAGGAAGCCTTTCCGACCATATAAAGTATATA-----TAT-TCTTGATCAGGGTCAATAGACASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGTAGAAGGAAGCCTT....................................................2546.2525000100010320000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATA-----TAT-TCTTGATCAGGGT.........2381.251000000072100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAGAAGGAAGCCTT....................................................1651.20600000000006000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGTAGAAGGAAGC.......................................................22201.0020001000001310131000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGTATATA-----TAT-TCTTGATCAGGGT.........2761.00600000040200000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAA-------AATATGTAACAGGTAGAAGGA..........................................................2670.86600000001210020000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGTAGAAGGAAGCCT.....................................................2440.75300200000010000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAA-------AATATGTAACAGGTAGAAGGAA.........................................................2770.57400000002000020000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGTATATA-----TAT-TCTTGATCAGGGA.........2770.57400000030100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGTAGAAGGAAGCCTTTC..................................................2540.50200000000002000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA-------AATATGTAACAGGTAGAAGGAAGC.......................................................2740.50200000000000011000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGTAGAAGGAAGCCTTT...................................................2640.50200100000001000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTATATA-----TAT-TCTTGATCAGGGT.........2580.50400000040000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA-------AATATGTAACAGGTAGAAGGAAGCC......................................................2840.50200000001000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGTATATA-----TAT-TCTTGATCAGGG..........2660.50300000010200000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA-------AATATGTAACAGGTAGAAGGAAG........................................................2650.40200000000000011000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATA-----TAT-TCTTGATCAGGGTCA.......2580.38300000011100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTATATA-----TAT-TCTTGATCAGGGT.........2680.38300000020100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGTAGAAGGAAG........................................................21200.35700000000040030000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGTAGAAGGAAGCCTTTCCGA...............................................2640.25100000000001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAACAGGTAGAAGGAAGCCTT....................................................2440.25100000000001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGTAGAAGGAAGCCTTT...................................................2440.25100000000001000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGTAGAAGGAAGCCTTTC..................................................2740.25100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGTAGAAGGAAGCCTT....................................................1940.25100000000001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAACAGGTAGAAGGAAGCCTTT...................................................2540.25100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGTAGAAGGAAGCCTTTCC.................................................2440.25100000000000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAAGTATATA-----TAT-TCTTGATCAGGGT.........2940.25100000010000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGTAGAAG............................................................17200.25500000000005000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAAGGAAGCCTTTCCGACCA............................................2240.25100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGAAGCCTTTCCGACC.............................................2050.20100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA-------AATATGTAACAGGTAGAAGGAAGT.......................................................2750.20100000000000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGTAGAAGG...........................................................18200.20400000000004000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAA-------AATATGTAACAGGTAGAAGGAAG........................................................2850.20100000000010000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAAGGAAGCCTT....................................................1550.20100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGTAGAAGGAAGC.......................................................16200.15300000000003000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGTAGAA.............................................................16200.15300000000003000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGACCATATAAAGTATATA-----TAT-TCT...................27200.15300000000120000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA-------AATATGTAACAGGTAGAAGGA..........................................................2470.14100000001000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAA-------AATATGTAACAGGTAGAAGGA..........................................................2770.14100000001000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAA-------AATATGTAACAGGTAGAA.............................................................2570.14100000000000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA-------AATATGTAACAGGTAGAAGGAA.........................................................2570.14100000000000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA-------AATATGTAACAGGTAGAAG............................................................2270.14100000000000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATA-----TAT-TCTTGATCAGGGTCAATA....2880.13100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATA-----TAT-TCTTGATCAGGGTC........2480.13100000000100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTATATA-----TAT-TCTTGATCAGGG..........2480.13100000000100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGTAGAAGGA..........................................................19200.10200000002000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATA-----TAT-TCTTGATCAGGGA.........23100.10100000000001000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGTAGA..............................................................15200.05100000000010000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATGTAACAGGTAGAAGGAAGCG......................................................25200.05100000000000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCGACCATATAAAGTATATA-----TA........................25200.05100000000010000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGTAGAAGGAAGT.......................................................22200.05100000000010000000
droSec2
CATT---CTA--------------GCAATTCTAC---------AGCCAG-A-----------------------------------------ACGCTT--CG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTGGCTTAAAACGCATGGTTATCCTTGATATTTACATGATGCCATGTA--------------------------------------------------------TTTGTGGTATTTATGATGGTCTGT-------------T--TGC-------------------T-ACAA-ATGTTAATACCCGTTACTCGTA------GAG-TTAAAGGGTATAAAAGATTCGTTGAAA-------AGTATGTA----------TGAAGCGTTTCCGATTATATAAAGTATATATGGTACAT-TCTTGATCAGGATTAATAGGCGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACCCGTTACTCGTA------GAG-T................................................................................................................2160.1710100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTCGTA------GAG-TTAAAGGGT........................................................................................................20100.1010010
droYak3
GCCT----GG------AAATCGAAAGAAAC-C-G---------------------------------------------------A-----------AACAGAACTTCAC-CAAA-----------------------AG--C----------------------------------------------------T--------------------------------ACA-------G------------------ACCATATAGGGTTCCTCACGGAAAT-----------------------------------------------------------------------------------------------TAAAGTAGCTTTCTGCTTGCTA--------------T-----------------G----------CCAT---TAAGTATAT-GTATTTATACCCCTTACTCGTA------GAG-CAAAAGGGTATACTAGATTCGTTGAAA-------GGTATGTAACAGGCAAAAGGAAGCGTTTTCGACCATATAAGGCATATATA-TTTGTTTTATATTCAGGGTTAATAACCGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTA------GAG-CAAAAGGGTATACTAGATT..............................................................................................27100.60606000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTA------GAG-CAAAAGGGTATACTAGA................................................................................................25100.50505000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGGTATACTAGATTCGTT..........................................................................................22200.40800000080000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAGGAAGCGTTTTCGACCATA..........................................25110.27300300000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTA------GAG-CAAAAGGGTATACTAGAT...............................................................................................26100.10101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGCAAAAGGAAGCGTTTTCGACC.............................................25110.09100100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA------GAG-CAAAAGGGTATG.....................................................................................................17200.05100000100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTAGATTCGTTGAAA-------GGT............................................................................21200.05100000010000
droEre2
GAAA---AAC-----------CAAAGAA-----A----------------A----------------------------------------------AAAAGAACAACAT-TTTA-----------------------AG--T----------------------------------------------------A--------------------------------ATA-------T------------------AATATGTA----------------------------------------------------------------------------------------ATGGTTAAAAATTTCCCATTAAACCAAA-------------------------------------------------------------------------GGAG-CTTTTTATTCCCGTTACTCGTA------GAG-TAAAAGGGTATACAAGGTTCGTTGAAA-------AGTATGTAACAGGCAGAAGGTAGCGTTTCCGACCATATAAAGTATATA-----TAT-TCTTGATCAGGATCAATAACCGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAAA-------AGTATGTAACAGGCAGA..............................................................26200.1530000003
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTCGTA------GAG-TAAAAGGGT........................................................................................................20200.0510000100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----TAT-TCTTGATCAGGATC........18200.0510000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAAA-------AGTATGTAACAGGCAGAA.............................................................28200.0510000001

Generated: 05/18/2015 at 01:40 AM