dmo_1945

CDS [Dmoj\GI24627-cds]; CDS [Dmoj\GI24627-cds]; exon [dmoj_GLEANR_9759:2]; exon [dmoj_GLEANR_9759:1]; intron [Dmoj\GI24627-in]

Name	Class	Family	Strand
(CAG)n	Simple_repeat	Simple_repeat	+

ACCTCCGGTCGTAGTTATGCCCGTTGTAGTCGTTACTACTGAAGGACCGGCATAAGAGCTCGCGACGGTGTTATTGTTGTTGTCGACGGTGTCGGCGTCGGCGTCGGCGTCGGCCTCGGCCTCGTCGTAGTAGTAGTGACCGGGTACCGTTAGGCCGCCGGCGTGAGTTAGGCGGCGACCACTGTCAGCTACCCGTCCACGTCGACGGCTTAGACGACCTCTACGTCGGCGGTCACTTGCTATGGTA ************************************************........((..(((((................(((((.......))))).((....))..(((....))).))))).))..........(((((((((...((((((((............)))))))).....))).))))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	V056 head
....................TCGGTGAAGTCGTTACTACTGA.............................................................................................................................................................................................................	22	3	1	1.00	1	1	0
.......................GTGAAGTCGTTACTACTGAAGGG.........................................................................................................................................................................................................	23	3	1	1.00	1	1	0
............................................................................................................................................CGGGTAGCGTTAGGCAGCGGGC.....................................................................................	22	3	1	1.00	1	0	1
..........................................................CTCGCGACAGTGTGAGTGTT.........................................................................................................................................................................	20	3	14	0.07	1	0	1

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6540:15028859-15029105 +	dmo_1945	TGGAGGCCAGC------------ATCAATACGGGCAACATCAGCAATGATGA--CTTCCTGGCCGT----------------ATTCTCG------AGCG--C-----------------------------------------------TGCCACAATAACAACAACAGCTGCCACAGCCGC------AGCCGCAGCCGC---AG---CCGG---AGCCGGA---GC------------------------------------------------------------------------------------------------------------AGCATCA---TCATCACTGGCCCATG-----------------GC-AATCCGG---CGGCCGC------ACTCAATCCGCCGCT---GGTGACAGTCGATGGGCAGGTGCAGCTGCC----------------------------------------------------------------------GAATCTGCTGGAG--------------------------A-------------------------------------------------------------T-GCAGCCG--CC----AGTGAACGATACCAT
droVir3	scaffold_12822:3214819-3215005 -		TGGATCCGATC------------ATCAATACGGGCAACATAAGCACCGATGA--ATTTCTGGCGGT----------------ATTCACA------AGCG--C-----------------------------------------------TGTCCCAACCACAACAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAACA---TCGCCGCTGCCAAACG-----------------GA-CAACCAG---GTGGCAC------ACTCAATCCGCCGCT---GGTAACCGTCGACGGGCTGCTCGATCTGAC-------------------------------------------------------------------------------------------------GCCG---TC----------------------------------------------------------------------------------GGTGAATGACACGAT
droGri2	scaffold_14830:3642570-3642771 +		TGGAGGCGAGC---------ATCATCAATACGGGCAACATCAGCACCGATGA--CTTCCTGGCGGT----------------GTTCACA------GCCA--A-----------------------------------------------TGCGACGGCAGCAACAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAATA---ACACCACTGCTC------------------------AACACGG---GGAACAC------CCTAAATCCGCCCCT---GGTCACAGTCGATGGGCAGGTGCAGCTGCA----------------------------------------------------------------------AAATCTGTTGGATCTGCC---------AGCG---------------------------------------------------------------------------------CC----AGTGAATGATACGAT
droWil2	scf2_1100000004921:2916154-2916463 -		TGAATGCCAAC------------ATCAATACGGGCAACATCAGCACCGATGA--CTTTCTGGCCGT----------------GTTCACA------ACTG--GCCACTCGACCTCCGTCTCGTCAGCGTCACCGGCAGCGGGTCGTGTGCCATCACAACAGCAACAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------AG-----------------CTGCCCACCAACTCGCCAACTGGCATCCGATCCGCGGACAATGGTACACTTAATCTCAATCCCCCACT---GCTTACGGTTGAGGGGCCGTTGCTCACATT-----------------GCC--------------------------------------------------AAACCTGTTTGATTTGCCCCCATC---GTCGGGAACA-------------------------------TCGTCGTCGTCGTCGAGT------GGC------T-ACATAAA--------TGTGAATGACACAAT
dp5	XR_group6:1441138-1441390 +		CA-------GC------------AGCAGCATGGGCAGCACCATCACAGTGCAGCCGCGGTGGCCGCTGCTGCGGCGGCAGCCGTCCA--------CCA-----CCAGCACCAGCAACAGCA---------------G-----------------------------CAGCAGGCGC------------------AGCAAGTGCAG------------------------CAGCAG---------------------------------------------------------------------------------------------CAGCAACAGCAGCACCATCA-------------------------------------------------------------------------------TCAGCAGCAGGTGGCTGCCGTTGCC-------------------------------------------------------------------------------------------------ATGGCGGCCATGGCCAATTTGTTGCCGCAACAGCAGCTGCTGCTGCA-------TCAGCAGAGTCTGCTCTCAAATGCCGCCA--------CCGCGGCGGCAGTGG
droPer2	scaffold_0:5611727-5611955 +		TGAATGCCAAC------------ATCAACACGGGCAACATCAGCACCGACGA--CTTTCTGGCCGT----------------GTTCACG------ACCA--G-----------------------------------------------CTCCACAGCCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCACTGGCG----GGCCGCCCAATGGCACGCGATACCCGGAGAGTGCCAC------CCTCAATCCCCCGCT---CCTAACCGTCGACGGCCAGCTGACGGTGCC----------------------------------------------------------------------GGGCCTTCTCGACCAGTCCCCAACGGGGTCGGGAGCAGGC-------------------------------------------------------------T-ATATCAA--------TGTGAACGACACGAT
droAna3	scaffold_13266:5028472-5028693 +		GGACAGCAA----------------CAGGTTGCGCAGCAGCAGCAGCAGCAA--CAG------------------------------CA------AGTG--C---------AGC--------------------------------------AACAGCAACAGCAGCAAGTGCAACAGCAACAGCCCC---AGCAGC------AA---CAAC---AGGTGGT--------------------------------------------------------------------------------------------------GCAGCAAG------------------------------------------------------------------------------TGCAGCAGCAACTGCCCACTGTTTCCAGTGTACAGCAGACCCTGCCGGTCCAGCAGTCGGTGGAACTGG------T--GC------------------------------------------------------------------AGCAACAAGC----------------------------------------------------TACTGG---C-ACAGGCA--------CCACAACGGTA-GCT
droBip1	scf7180000396714:77442-77619 +		TGAATGCCAAT------------ATCAATACGGGCAACATCAGCACCGATGA--CTTCTTGGCCGT----------------GTTCACG------ACCA--GC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGCCGGAGAACACCAC------TCTCAATCCGCCCCT---CCTCGCCGTCGACGGACAGCTGACCTTGCCCAC-----------GCC------GGGAGTG--GG---------------------------------------------------------------CCTGGGCCTCGGC-------------------------------------------------------------T-ACATCAA--------CGTGAACGACACCAT
droKik1	scf7180000302698:608631-608889 +		CGCAGCAG--CAACT------GCATACG---CAGCAGCATCAGCAGCAACAT--G----TGTCAGC---CGCCCAGCAGC--AGTTGCA------ACAT--C---AACAACAGCAACAGCA---------------G-----------------------------CAGCAGCAGC------------------AGCATCTGCAG------------------------CAGCAGCAGCAGCATCAGCAG--------------------------------GTGCAGCATAGTCACCACCAGCAGCAACAACATGCTGCCCAGCAGC---------------------------------------------------------------------------------ATCAGCAGCA---GCTGCATCATGATCCCCAGCAGCAGCAGCA----------------------------------------------------------------------ACATCCGCCGCAG--------------------------T-------------------------------------------------------------A-TCACCCG--CATCACCTGCACCAGCA-CGG
droFic1	scf7180000453812:379152-379314 +		TGAATGCGAAC------------ATCAATACGGGCAACATCAGCACCGATGA--CTTTCTGGCCGT----------------GTTCTCC------ACCG--GA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACCAGACAATGCCAC------ACTCAATCCGCCGCT---TCTCAGTGTCGATGGGCAGTTGACCCTGCC-------------------------------------------------------------------------------------------------ACCGGGATCGGGA-------------------------------------------------------------T-ATATTAA--------TGTAAACGACACGAT
droEle1	scf7180000491267:84432-84645 -		CAGCATTGG-C---CGCAGCAGCATCAGCAGCAGCAACATCAGCCGCAGCAG--CATC-----------------------------------------------------AGCAGCAGCA---------------A-----------------------------CATCAGCCGCAGCAGC---ATC---AGCAGC------AGCAACATC---AGCCGCAGCAGCATAAGCCG-----------------------------------------------------CAG-------------------------------------CAGCATCAGCAGCA---GCAACATCAGC-----------------------------------------------------------------------------------------------------------CGCAGCAGCATT------A--GC------------------------------------------------------------------CGCAGCA----------------------GCATTAGCCGCAGCA-------GCATCAG------C------C-GCAGCAG---C----AGCGATCAGTAGCAG
droRho1	scf7180000779900:305765-305927 -		TGAATGCGAAC------------ATCAATACGGGCAACATCAGCACCGATGA--CTTTCTGGCCGT----------------GTTCACG------ACCG--GA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACCGGAGAATGCCAC------CCTCAATCCGCCCCT---GCTCAGTGTCGATGGGCAGCTGACCCTGCC-------------------------------------------------------------------------------------------------CCCGGGATCGGGA-------------------------------------------------------------T-TCATCAA--------TGTGAATGACACGAT
droBia1	scf7180000301760:3442112-3442363 -		CAGACGCAG-C---------TGCAGCGACTCAAGCAACAGCAGCAAAA--------------------------------------------------G--C---------TGC--------------------------------------AGCAGCAACAGCAACAGCAGCAGCAGCAGC---AGC---AGCAGC------AGCAACTGG---AGGCGGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCACGGGGGCGTGGC-------TAAGCACTGCCTGCAGTTCCCACCTCCGCCGGACTACCCACCACCCACCGGAGGTGG------T--TCGCCGGGCAATACTCCCGGCAGGAGACAGCTGCTGCCCCGCT----------------------ATCCCGATCCAGA-------------------------------------------------------------T-CCG--GATGCC----ATTGAGATCTGCAAT
droTak1	scf7180000415712:869465-869691 -		CAGCA-------------------GCAACACCAGCAGCAACAGCAACA------CCAGGCGGCCGT---CTTCCACCACC--AGGTGGC-----GACCATTGCCGCCCAACAGCAGCAGCA-----------------------------------------------------ACAGCAGC------AGCAGCAGCAAC---------AGCAGGCGCAAGT---GCAGCACCAG---------------------------------------------------------------------------------------------CAGCAACTGCAGCAGCAGTTCCACTACC----------------------------------------------------AG---GCCCAG---GCTCA-AGCCCAGGCGCAG---GCCATGCT-------------------------------------------------------------------------------------------------GCAGACGTACATG-------------------------------------------------------------C-AACTGCA--------GGTGAACAGTGCCGT
droEug1	scf7180000409804:907522-907684 -		TGAATGCTAAC------------ATCAATACGGGCAACATCAGCACCGATGA--CTTTCTGGCCGT----------------ATTCACG------ACGG--CC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACCGGATAATGCCAC------TCTCAATCCGCCCCT---GCTCAGTGTCGACGGGCAGTTGACCCTGCC-------------------------------------------------------------------------------------------------ACCGGGATCGGGT-------------------------------------------------------------T-ATATCAA--------CCTTAACGATACGAT
dm3	chr3R:14673935-14674097 -		TGAATGCCAAC------------ATCAATACGGGCAACATCAGCACCGATGA--CTTTCTGGCCGT----------------CTTCTCG------ACCG--GA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGCCGGACAATGCCAC------CCTCAATCCGCCCCT---GCTCAGTGTCGATGGTCAGCTGACCCTGCC-------------------------------------------------------------------------------------------------GCCGGGATCGGGA-------------------------------------------------------------T-ATGTCAA--------TGTCAACGATACGAT
droSim2	3r:6583973-6584135 +		TGAATGCCAAC------------ATCAATACGGGCAACATCAGCACCGATGA--CTTTCTGGCCGT----------------CTTCTCG------ACCG--GA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGCCGGACAATGCCAC------CCTCAATCCGCCCCT---GCTCAGTGTCGATGGTCAGCTGACCCTGCC-------------------------------------------------------------------------------------------------GCCGGGATCGGGA-------------------------------------------------------------T-ATGTCAA--------TGTCAACGATACGAT
droSec2	scaffold_5:5225675-5225837 +		TGAATGCCAAC------------ATCAATACGGGCAACATCAGCACCGATGA--CTTTCTGGCCGT----------------CTTCTCG------ACCG--GA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGCCGGACAATGCCAC------CCTCAATCCGCCCCT---GCTCAGTGTCGATGGTCAGCTGACCCTGCC-------------------------------------------------------------------------------------------------GCCGGGATCAGGA-------------------------------------------------------------T-ATGTCAA--------TGTCAATGATACGAT
droYak3	2L:7632382-7632623 +		CAGCAGTAA-T---C------ACAACAAGATA---------AGCAGCTAT------------TTAC---CGCCCAACCAAACGAGCG--------CCA-----CGTGCAACAACAGCAATA---------------A-----------------------------CAGCAACCACAGCAGC------AGCAACAACAACAG------CAGC---AGCAACA---------------ACAACATCAGCGGATCCCTGAACAGCAGCCTGAACTCACCGTTCAGTGCGCCACAGATA-------------------------------------------------------------------------------------------------------------------CCGCCACC---AGTGACCGCCT-----------------------------------C------GAGTGCAGCAG---------------------CAGC-------CGCAGCAGCGGC---------------------------------------------------------------------------------------------C-GCATCA-----------CTGACCGCCGCAG
droEre2	scaffold_4845:15893068-15893311 -		CAGCAGCAA-C---A------CCATCAG------CAACAGCAGCAGCAGCCC--AAAATGGGCGGT----------------GTTCCCAATTTCAA-------CAAACAACAGCAGCAGCA---------------A-----------------------------CAGGTGCCGCAGCAGC---------------AACTGCAG------------------------CAGCAG---------------------------------------------------------------------------------------------CAGCAACAGCAGCA---GCAATACTCACCC----TTCAGCAACCAGAATCCC-A---------ATGCGGC------GGCCAACT-TTCTCA---ATTGTCCGCCAAGGGGCGGTCCAAATGGCA-------------------------------------------------------------------------------------------------ACCAGCAGCCGGG-------------------------------------------------------------C-AATTTGG--------CGCAGCAGCAGCAGC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

TGGAGGCCAGC------------ATCAATACGGGCAACATCAGCAATGATGA--CTTCCTGGCCGT----------------ATTCTCG------AGCG--C-----------------------------------------------TGCCACAATAACAACAACAGCTGCCACAGCCGC------AGCCGCAGCCGC---AG---CCGG---AGCCGGA---GC------------------------------------------------------------------------------------------------------------AGCATCA---TCATCACTGGCCCATG-----------------GC-AATCCGG---CGGCCGC------ACTCAATCCGCCGCT---GGTGACAGTCGATGGGCAGGTGCAGCTGCC----------------------------------------------------------------------GAATCTGCTGGAG--------------------------A-------------------------------------------------------------T-GCAGCCG--CC----AGTGAACGATACCAT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droVir3

TGGATCCGATC------------ATCAATACGGGCAACATAAGCACCGATGA--ATTTCTGGCGGT----------------ATTCACA------AGCG--C-----------------------------------------------TGTCCCAACCACAACAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAACA---TCGCCGCTGCCAAACG-----------------GA-CAACCAG---GTGGCAC------ACTCAATCCGCCGCT---GGTAACCGTCGACGGGCTGCTCGATCTGAC-------------------------------------------------------------------------------------------------GCCG---TC----------------------------------------------------------------------------------GGTGAATGACACGAT

Size

Hit Count

Total Norm

Total

M027
Male-body

M028
Head

M047
Female-body

M061
Embryo

SRR060654
Ovary

SRR060655
Testis

SRR060656
Ovary

SRR060657
Testis

SRR060658
Ovary

SRR060659
Testis

SRR060660
Ovary

SRR060661
Embryo

SRR060662
Embryo

SRR060663
Embryo

SRR060664
Male-body

SRR060665
Female-body

SRR060666
Male-body

SRR060667
Female-body

SRR060668
Male-body

SRR060669
Female-body

SRR060670
Testis

SRR060671
Male-body

SRR060672
Female-body

SRR060673
Ovary

SRR060674
Ovary

SRR060675
Ovary

SRR060676
Ovary

SRR060677
Ovary

SRR060678
Testis

SRR060679
Testis

SRR060680
Testis

SRR060681
Testis

SRR060682
Embryo

SRR060683
Testis

SRR060684
Embryo

SRR060685
Embryo

SRR060686
Embryo

SRR060687
Embryo

SRR060688
Ovary

SRR060689
Testis

SRR1106712
embryo_0-2h

SRR1106713
embryo_0-2h

SRR1106714
embryo_2-4h

SRR1106715
embryo_4-6h

SRR1106716
embryo_4-6h

SRR1106717
embryo_6-8h

SRR1106718
embryo_6-8h

SRR1106719
embryo_8-10h

SRR1106720
embryo_8-10h

SRR1106721
embryo_10-12h

SRR1106722
embryo_10-12h

SRR1106723
embryo_12-14h

SRR1106724
embryo_12-14h

SRR1106725
embryo_14-16h

SRR1106726
embryo_14-16h

SRR1106727
larvae

SRR1106728
larvae

SRR1106729
mixed whole adult body

SRR1106730
embryo_16-30h

V047
Embryo

V053
Head

V116
Male-body

GSM1528803
follicle cells

No Reads

droGri2

TGGAGGCGAGC---------ATCATCAATACGGGCAACATCAGCACCGATGA--CTTCCTGGCGGT----------------GTTCACA------GCCA--A-----------------------------------------------TGCGACGGCAGCAACAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAATA---ACACCACTGCTC------------------------AACACGG---GGAACAC------CCTAAATCCGCCCCT---GGTCACAGTCGATGGGCAGGTGCAGCTGCA----------------------------------------------------------------------AAATCTGTTGGATCTGCC---------AGCG---------------------------------------------------------------------------------CC----AGTGAATGATACGAT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

TGAATGCCAAC------------ATCAATACGGGCAACATCAGCACCGATGA--CTTTCTGGCCGT----------------GTTCACA------ACTG--GCCACTCGACCTCCGTCTCGTCAGCGTCACCGGCAGCGGGTCGTGTGCCATCACAACAGCAACAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------AG-----------------CTGCCCACCAACTCGCCAACTGGCATCCGATCCGCGGACAATGGTACACTTAATCTCAATCCCCCACT---GCTTACGGTTGAGGGGCCGTTGCTCACATT-----------------GCC--------------------------------------------------AAACCTGTTTGATTTGCCCCCATC---GTCGGGAACA-------------------------------TCGTCGTCGTCGTCGAGT------GGC------T-ACATAAA--------TGTGAATGACACAAT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

dp5

CA-------GC------------AGCAGCATGGGCAGCACCATCACAGTGCAGCCGCGGTGGCCGCTGCTGCGGCGGCAGCCGTCCA--------CCA-----CCAGCACCAGCAACAGCA---------------G-----------------------------CAGCAGGCGC------------------AGCAAGTGCAG------------------------CAGCAG---------------------------------------------------------------------------------------------CAGCAACAGCAGCACCATCA-------------------------------------------------------------------------------TCAGCAGCAGGTGGCTGCCGTTGCC-------------------------------------------------------------------------------------------------ATGGCGGCCATGGCCAATTTGTTGCCGCAACAGCAGCTGCTGCTGCA-------TCAGCAGAGTCTGCTCTCAAATGCCGCCA--------CCGCGGCGGCAGTGG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
............................................................................................................................................................................................................G------------------------CAGCAG---------------------------------------------------------------------------------------------CAGCAACAGCAGCA.........................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	2	0	0	0	0	0
.......................................................................................................................................................................................................GTGCAG------------------------CAGCAG---------------------------------------------------------------------------------------------CAGCAAC................................................................................................................................................................................................................................................................................................................................	19	12	0.08	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................AG------------------------CAGCAG---------------------------------------------------------------------------------------------CAGCAACAGCAG...........................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................GCAG------------------------CAGCAG---------------------------------------------------------------------------------------------CAGCAACAGC.............................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0
...........................................................................................................CACCAGCAACAGCA---------------G-----------------------------CAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................AG------------------------CAGCAG---------------------------------------------------------------------------------------------CAGCAACAGCAGCA.........................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................................GCAG---------------------------------------------------------------------------------------------CAGCAACAGCAGCACC.......................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................CACCAGCAACAGCA---------------G-----------------------------CAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0	0	0	0	0

droPer2

TGAATGCCAAC------------ATCAACACGGGCAACATCAGCACCGACGA--CTTTCTGGCCGT----------------GTTCACG------ACCA--G-----------------------------------------------CTCCACAGCCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCACTGGCG----GGCCGCCCAATGGCACGCGATACCCGGAGAGTGCCAC------CCTCAATCCCCCGCT---CCTAACCGTCGACGGCCAGCTGACGGTGCC----------------------------------------------------------------------GGGCCTTCTCGACCAGTCCCCAACGGGGTCGGGAGCAGGC-------------------------------------------------------------T-ATATCAA--------TGTGAACGACACGAT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...............................................................................................................................................................................................................................................................................................................................................................................CCAATGGCACGCGATACCCGG...........................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0

droAna3

GGACAGCAA----------------CAGGTTGCGCAGCAGCAGCAGCAGCAA--CAG------------------------------CA------AGTG--C---------AGC--------------------------------------AACAGCAACAGCAGCAAGTGCAACAGCAACAGCCCC---AGCAGC------AA---CAAC---AGGTGGT--------------------------------------------------------------------------------------------------GCAGCAAG------------------------------------------------------------------------------TGCAGCAGCAACTGCCCACTGTTTCCAGTGTACAGCAGACCCTGCCGGTCCAGCAGTCGGTGGAACTGG------T--GC------------------------------------------------------------------AGCAACAAGC----------------------------------------------------TACTGG---C-ACAGGCA--------CCACAACGGTA-GCT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...............................................................................................................AGC--------------------------------------AACAGCAACAGCAGCAAGTGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	3.00	3	0	3	0	0	0	0
..........................................................................................................................................................................................................................TGGT--------------------------------------------------------------------------------------------------GCAGCAAG------------------------------------------------------------------------------TGCAGCAGCAACTGC..........................................................................................................................................................................................................................................	27	1	2.00	2	0	2	0	0	0	0
...................................................A--CAG------------------------------CA------AGTG--C---------AGC--------------------------------------AACAGCAACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTGG------T--GC------------------------------------------------------------------AGCAACAAGC----------------------------------------------------TACTGG---C-AC............................	29	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGG------T--GC------------------------------------------------------------------AGCAACAAGC----------------------------------------------------TACTGG---C-ACA...........................	28	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACTGG------T--GC------------------------------------------------------------------AGCAACAAGC----------------------------------------------------C........................................	22	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCAGTGTACAGCAGACCCTGC............................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGCAGTCGGTGGAACTGG------T--GC------------------------------------------------------------------A......................................................................................................	26	1	1.00	1	1	0	0	0	0	0
...............................................................................................................AGC--------------------------------------AACAGCAACAGCAGCAAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCAGTCGGTGGAACTGG------T--GC------------------------------------------------------------------AGCAAC.................................................................................................	29	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTGG------T--GC------------------------------------------------------------------AGCAACAAGC----------------------------------------------------TAC......................................	23	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................GCAACAGCAACAGCCCC---AGCAGC------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTCGGTGGAACTGG------T--GC------------------------------------------------------------------AGCAAC.................................................................................................	26	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTGG------T--GC------------------------------------------------------------------AGCAACAAGC----------------------------------------------------T........................................	21	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................AGCAACAGCAGCAAGTGCAACAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................T--------------------------------------------------------------------------------------------------GCAGCAAG------------------------------------------------------------------------------TGCAGCAGCAACTGCC.........................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTACAGCAGACCCTGCCG..........................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..................................................AA--CAG------------------------------CA------AGTG--C---------AGC--------------------------------------AACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
................................................................................................................GC--------------------------------------AACAGCAACAGCAGCAAGTGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................ACAGCAGCAAGTGCAACAGCAACAGCCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................AACAGCAACAGCCCC---AGCAGC------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGTCGGTGGAACTGG------T--...........................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
.......................................GCAGCAGCAGCAA--CAG------------------------------CA------AGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGCAGTCGGTGGAACTGG------T--...........................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGGTGGAACTGG------T--GC------------------------------------------------------------------AGCAACA................................................................................................	25	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................................................................AACAGCAACAGCCCC---AGCAGC------AA---CAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
...................................................A--CAG------------------------------CA------AGTG--C---------AGC--------------------------------------AACAGCAACAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGAACTGG------T--GC------------------------------------------------------------------AGCAA..................................................................................................	19	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGCAGTCGGTGGAACTGG------T--GC------------------------------------------------------------------AGC....................................................................................................	27	1	1.00	1	0	1	0	0	0	0
...............................GCGCAGCAGCAGCAGCAGCAA--CAG------------------------------C.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................C---AGCAGC------AA---CAAC---AGGTGGT--------------------------------------------------------------------------------------------------GCAGC..........................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................T--------------------------------------------------------------------------------------------------GCAGCAAG------------------------------------------------------------------------------TGCAGCAGCAACTGC..........................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................ACAGCAACAGCAGCAAGTGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAGCAGACCCTGCCGGT........................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGG---C-ACAGGCA--------CCACAACG.......	20	1	1.00	1	0	0	0	0	0	1
...........................................CAGCAGCAA--CAG------------------------------CA------AGTG--C---------AGC--------------------------------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	3	0.33	1	0	1	0	0	0	0
................................CGCAGCAGCAGCAGCAGCAA--CAG------------------------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	10	0.10	1	1	0	0	0	0	0
..................................CAGCAGCAGCAGCAGCAA--CAG------------------------------CA------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	1
...................................AGCAGCAGCAGCAGCAA--CAG------------------------------CA------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0

droBip1

TGAATGCCAAT------------ATCAATACGGGCAACATCAGCACCGATGA--CTTCTTGGCCGT----------------GTTCACG------ACCA--GC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGCCGGAGAACACCAC------TCTCAATCCGCCCCT---CCTCGCCGTCGACGGACAGCTGACCTTGCCCAC-----------GCC------GGGAGTG--GG---------------------------------------------------------------CCTGGGCCTCGGC-------------------------------------------------------------T-ACATCAA--------CGTGAACGACACCAT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CGCAGCAG--CAACT------GCATACG---CAGCAGCATCAGCAGCAACAT--G----TGTCAGC---CGCCCAGCAGC--AGTTGCA------ACAT--C---AACAACAGCAACAGCA---------------G-----------------------------CAGCAGCAGC------------------AGCATCTGCAG------------------------CAGCAGCAGCAGCATCAGCAG--------------------------------GTGCAGCATAGTCACCACCAGCAGCAACAACATGCTGCCCAGCAGC---------------------------------------------------------------------------------ATCAGCAGCA---GCTGCATCATGATCCCCAGCAGCAGCAGCA----------------------------------------------------------------------ACATCCGCCGCAG--------------------------T-------------------------------------------------------------A-TCACCCG--CATCACCTGCACCAGCA-CGG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TGAATGCGAAC------------ATCAATACGGGCAACATCAGCACCGATGA--CTTTCTGGCCGT----------------GTTCTCC------ACCG--GA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACCAGACAATGCCAC------ACTCAATCCGCCGCT---TCTCAGTGTCGATGGGCAGTTGACCCTGCC-------------------------------------------------------------------------------------------------ACCGGGATCGGGA-------------------------------------------------------------T-ATATTAA--------TGTAAACGACACGAT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CAGCATTGG-C---CGCAGCAGCATCAGCAGCAGCAACATCAGCCGCAGCAG--CATC-----------------------------------------------------AGCAGCAGCA---------------A-----------------------------CATCAGCCGCAGCAGC---ATC---AGCAGC------AGCAACATC---AGCCGCAGCAGCATAAGCCG-----------------------------------------------------CAG-------------------------------------CAGCATCAGCAGCA---GCAACATCAGC-----------------------------------------------------------------------------------------------------------CGCAGCAGCATT------A--GC------------------------------------------------------------------CGCAGCA----------------------GCATTAGCCGCAGCA-------GCATCAG------C------C-GCAGCAG---C----AGCGATCAGTAGCAG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TGAATGCGAAC------------ATCAATACGGGCAACATCAGCACCGATGA--CTTTCTGGCCGT----------------GTTCACG------ACCG--GA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACCGGAGAATGCCAC------CCTCAATCCGCCCCT---GCTCAGTGTCGATGGGCAGCTGACCCTGCC-------------------------------------------------------------------------------------------------CCCGGGATCGGGA-------------------------------------------------------------T-TCATCAA--------TGTGAATGACACGAT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CAGACGCAG-C---------TGCAGCGACTCAAGCAACAGCAGCAAAA--------------------------------------------------G--C---------TGC--------------------------------------AGCAGCAACAGCAACAGCAGCAGCAGCAGC---AGC---AGCAGC------AGCAACTGG---AGGCGGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCACGGGGGCGTGGC-------TAAGCACTGCCTGCAGTTCCCACCTCCGCCGGACTACCCACCACCCACCGGAGGTGG------T--TCGCCGGGCAATACTCCCGGCAGGAGACAGCTGCTGCCCCGCT----------------------ATCCCGATCCAGA-------------------------------------------------------------T-CCG--GATGCC----ATTGAGATCTGCAAT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CAGCA-------------------GCAACACCAGCAGCAACAGCAACA------CCAGGCGGCCGT---CTTCCACCACC--AGGTGGC-----GACCATTGCCGCCCAACAGCAGCAGCA-----------------------------------------------------ACAGCAGC------AGCAGCAGCAAC---------AGCAGGCGCAAGT---GCAGCACCAG---------------------------------------------------------------------------------------------CAGCAACTGCAGCAGCAGTTCCACTACC----------------------------------------------------AG---GCCCAG---GCTCA-AGCCCAGGCGCAG---GCCATGCT-------------------------------------------------------------------------------------------------GCAGACGTACATG-------------------------------------------------------------C-AACTGCA--------GGTGAACAGTGCCGT	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TGAATGCTAAC------------ATCAATACGGGCAACATCAGCACCGATGA--CTTTCTGGCCGT----------------ATTCACG------ACGG--CC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACCGGATAATGCCAC------TCTCAATCCGCCCCT---GCTCAGTGTCGACGGGCAGTTGACCCTGCC-------------------------------------------------------------------------------------------------ACCGGGATCGGGT-------------------------------------------------------------T-ATATCAA--------CCTTAACGATACGAT	Size	Hit Count	Total Norm	Total
No Reads

dm3

TGAATGCCAAC------------ATCAATACGGGCAACATCAGCACCGATGA--CTTTCTGGCCGT----------------CTTCTCG------ACCG--GA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGCCGGACAATGCCAC------CCTCAATCCGCCCCT---GCTCAGTGTCGATGGTCAGCTGACCCTGCC-------------------------------------------------------------------------------------------------GCCGGGATCGGGA-------------------------------------------------------------T-ATGTCAA--------TGTCAACGATACGAT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...............................................GATGA--CTTTCTGGCCGT----------------C............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCAA--------TGTCAACGATACGA.	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................CTTTCTGGCCGT----------------CTTCTCG------AC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGTGTCGATGGTCAGCTGACCCT..............................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCC-------------------------------------------------------------------------------------------------GCCGGGATCGGGA-------------------------------------------------------------T-ATGTCAA--------...............	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................CCAC------CCTCAATCCGCCCCT---GC.......................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TGAATGCCAAC------------ATCAATACGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................CCGT----------------CTTCTCG------ACCG--GA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGC..............................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................CCTCAATCCGCCCCT---GCTCAGTGTCGA.............................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................ACCGATGA--CTTTCTGGCCGT----------------CTTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................CCT---GCTCAGTGTCGATGGT.........................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCGATGGTCAGCTGACCCT..............................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................CTTTCTGGCCGT----------------CTTCTCG------ACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................TCG------ACCG--GA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGCCGGACAATG.....................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................TTCTCG------ACCG--GA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGCCGGACAATGC....................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TGAATGCCAAC------------ATCAATACGGGCAACATCAGCACCGATGA--CTTTCTGGCCGT----------------CTTCTCG------ACCG--GA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGCCGGACAATGCCAC------CCTCAATCCGCCCCT---GCTCAGTGTCGATGGTCAGCTGACCCTGCC-------------------------------------------------------------------------------------------------GCCGGGATCGGGA-------------------------------------------------------------T-ATGTCAA--------TGTCAACGATACGAT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...........................................CACCGATGA--CTTTCTGGCCGT----------------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGGGA-------------------------------------------------------------T-ATGTCAA--------TGTC...........	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................CTTTCTGGCCGT----------------CTTCTCG------AC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................GATGA--CTTTCTGGCCGT----------------CTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCAA--------TGTCAACGATAC...	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..AATGCCAAC------------ATCAATACGGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGA-------------------------------------------------------------T-ATGTCAA--------TGTCAACGATACG..	24	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0

droSec2

TGAATGCCAAC------------ATCAATACGGGCAACATCAGCACCGATGA--CTTTCTGGCCGT----------------CTTCTCG------ACCG--GA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGCCGGACAATGCCAC------CCTCAATCCGCCCCT---GCTCAGTGTCGATGGTCAGCTGACCCTGCC-------------------------------------------------------------------------------------------------GCCGGGATCAGGA-------------------------------------------------------------T-ATGTCAA--------TGTCAATGATACGAT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

CAGCAGTAA-T---C------ACAACAAGATA---------AGCAGCTAT------------TTAC---CGCCCAACCAAACGAGCG--------CCA-----CGTGCAACAACAGCAATA---------------A-----------------------------CAGCAACCACAGCAGC------AGCAACAACAACAG------CAGC---AGCAACA---------------ACAACATCAGCGGATCCCTGAACAGCAGCCTGAACTCACCGTTCAGTGCGCCACAGATA-------------------------------------------------------------------------------------------------------------------CCGCCACC---AGTGACCGCCT-----------------------------------C------GAGTGCAGCAG---------------------CAGC-------CGCAGCAGCGGC---------------------------------------------------------------------------------------------C-GCATCA-----------CTGACCGCCGCAG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
....................................................................................................................................................................................GC------AGCAACAACAACAG------CAGC---AGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................AGCAGC------AGCAACAACAACAG------CAGC---AGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................AACAACAACAG------CAGC---AGCAACA---------------ACA...............................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................CAACAACAACAG------CAGC---AGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................GCAACAACAACAG------CAGC---AGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................GC------AGCAACAACAACAG------CAGC---AGCAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0
............................................................................................................................................................................................AGCAACAACAACAG------CAGC---A.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................AGCAGC------AGCAACAACAACAG------CA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................GCAGC------AGCAACAACAACAG------C..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

CAGCAGCAA-C---A------CCATCAG------CAACAGCAGCAGCAGCCC--AAAATGGGCGGT----------------GTTCCCAATTTCAA-------CAAACAACAGCAGCAGCA---------------A-----------------------------CAGGTGCCGCAGCAGC---------------AACTGCAG------------------------CAGCAG---------------------------------------------------------------------------------------------CAGCAACAGCAGCA---GCAATACTCACCC----TTCAGCAACCAGAATCCC-A---------ATGCGGC------GGCCAACT-TTCTCA---ATTGTCCGCCAAGGGGCGGTCCAAATGGCA-------------------------------------------------------------------------------------------------ACCAGCAGCCGGG-------------------------------------------------------------C-AATTTGG--------CGCAGCAGCAGCAGC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................GAATCCC-A---------ATGCGGC------GGCC.......................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................AACCAGAATCCC-A---------ATGCGGC------GGCC.......................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................AACCAGAATCCC-A---------ATGCGGC------GGC........................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
..............................................................................................................................................................................................................................................................................................................................................CAGCAGCA---GCAATACTCACCC----T....................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................AGCAGCA---------------A-----------------------------CAGGTGCCGCAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
..............A------CCATCAG------CAACAGCAGCAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	3	0.33	1	1	0	0	0	0	0	0
.............................................................................................................ACAGCAGCAGCA---------------A-----------------------------CAGGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	4	0.25	1	0	0	0	0	0	1	0
..........................................................................................................ACAACAGCAGCAGCA---------------A-----------------------------CAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	8	0.13	1	1	0	0	0	0	0	0
............................................................................................................................................................................................................G------------------------CAGCAG---------------------------------------------------------------------------------------------CAGCAACAGCAGCA---GC....................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0

dmo_1945

scaffold_6540:15028909-15029055 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads