ID:

dmo_1922

 Coordinate:

scaffold_6540:12951968-12952118 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.4 -13.3 -13.3

Flybase annnotation

exon [dmoj_GLEANR_8248:4]; CDS [Dmoj\GI23086-cds]; intron [Dmoj\GI23086-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AGTCCAAGCCACTAAGTTAGAGCTTGCGATTAAATAAATAAGCGCATATAATAAATCATCAAACAAACGGGGAAGTCTTGTAATAAAAGTATTTCACTTGACTTTTGGTTTGGCTTTGAAATAAACAGTTACATATATACATACATTTAAAACTGCATTAAAATGTAAATCTAATTGATGCATTCCATTTTGAAATAATAGCAAAGATGTCTGGCCGTCTTCAAGCCAAAAGATGAAGAGCCATATGGGAG
*****************************************************.....((((((((((..(((((((..((((((....))))..))..))))))).)))))..))))).......***************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V110
male body		 V056
head
 M060
embryo
 V041
embryo
.......................................................................................................TTTGGTTTGGCTTTGAAATAAAC............................................................................................................................. 23 0 1 37.00 37 24 9 3 1 0
...........................................................................................................GTTTGGCTTTGAAATAAAC............................................................................................................................. 19 0 1 11.00 11 9 2 0 0 0
......................................................................................................TTTTGGTTTGGCTTTGAAATAAAC............................................................................................................................. 24 0 1 8.00 8 7 1 0 0 0
.......GCCACTAAGTTAGAGCTTGCGATT............................................................................................................................................................................................................................ 24 0 1 7.00 7 5 2 0 0 0
........CCACTAAGTTAGAGCTTGCGATT............................................................................................................................................................................................................................ 23 0 1 4.00 4 4 0 0 0 0
........................................................................................................TTGGTTTGGCTTTGAAATAAAC............................................................................................................................. 22 0 1 4.00 4 4 0 0 0 0
.....................................................AATCATCAAACAAACGGGGAAGTCTTG........................................................................................................................................................................... 27 0 1 3.00 3 3 0 0 0 0
....................................................................................................ACTTTTGGTTTGGCTTTGAAATAAAC............................................................................................................................. 26 0 1 3.00 3 2 1 0 0 0
...........CTAAGTTAGAGCTTGCGAT............................................................................................................................................................................................................................. 19 0 1 3.00 3 3 0 0 0 0
.........................................................ATCAAACAAACGGGGAAGTCTTGTA......................................................................................................................................................................... 25 0 1 3.00 3 3 0 0 0 0
...................................................................................................GACTTTTGGTTTGGCTTTGAAATAAAC............................................................................................................................. 27 0 1 3.00 3 2 1 0 0 0
........................................................CATCAAACAAACGGGGAAGTCTTGT.......................................................................................................................................................................... 25 0 1 3.00 3 3 0 0 0 0
.........................................................................................TATTTCACTTGACTTTTGGTTT............................................................................................................................................ 22 0 1 3.00 3 3 0 0 0 0
......................................................................................................TTTTGGTTTGGCTTTGAAATA................................................................................................................................ 21 0 1 2.00 2 2 0 0 0 0
....................................................................................AAAAGTATTTCACTTGACTTTTG................................................................................................................................................ 23 0 1 2.00 2 2 0 0 0 0
......................................................ATCATCAAACAAACGGGGAAGTCTTGT.......................................................................................................................................................................... 27 0 1 2.00 2 2 0 0 0 0
............TAAGTTAGAGCTTGCGATT............................................................................................................................................................................................................................ 19 0 1 2.00 2 2 0 0 0 0
..........................................CGCATATAATAAATCATCAAAC........................................................................................................................................................................................... 22 0 1 2.00 2 2 0 0 0 0
............................................CATATAATAAATCATCAAACA.......................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0
.............................................................AACAAACGGGGAAGTCTTGT.......................................................................................................................................................................... 20 0 1 2.00 2 1 0 1 0 0
............................................................................CTTGTAATAAAAGTATTTCACTTGACT.................................................................................................................................................... 27 0 1 2.00 2 2 0 0 0 0
..................................................................................ATAAAAGTATTTCACTTGACT.................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0
......................................................................................AAGTATTTCACTTGACTTTTGGTTT............................................................................................................................................ 25 0 1 2.00 2 2 0 0 0 0
..............................TAAATAAATAAGCGCATATAAT....................................................................................................................................................................................................... 22 0 1 2.00 2 1 1 0 0 0
....................................................................GGGGAAGTCTTGTAATAAA.................................................................................................................................................................... 19 0 1 2.00 2 2 0 0 0 0
.........CACTAAGTTAGAGCTTGCGATT............................................................................................................................................................................................................................ 22 0 1 2.00 2 1 1 0 0 0
............................................................................................................TTTGGCTTTGAAATAAAC............................................................................................................................. 18 0 1 2.00 2 2 0 0 0 0
.......................................................................................................TTTGGTTTGGCTTTGAAATAAACA............................................................................................................................ 24 0 1 2.00 2 0 2 0 0 0
.....................................................................................................CTTTTGGTTTGGCTTTGAAATAAAC............................................................................................................................. 25 0 1 2.00 2 1 1 0 0 0
.........................................................................................TATTTCACTTGACTTTTGGTT............................................................................................................................................. 21 0 1 2.00 2 2 0 0 0 0
......................CTTGCGATTAAATAAATAAGCGC.............................................................................................................................................................................................................. 23 0 1 2.00 2 1 1 0 0 0
......................................................ATCATCAAACAAACGGGGAA................................................................................................................................................................................. 20 0 1 2.00 2 2 0 0 0 0
.......GCCACTAAGTTAGAGCTTGCGAT............................................................................................................................................................................................................................. 23 0 1 2.00 2 2 0 0 0 0
....................................................................................AAAAGTATTTCACTTGACTTTTGGTT............................................................................................................................................. 26 0 1 2.00 2 2 0 0 0 0
...........CTAAGTTAGAGCTTGCGATT............................................................................................................................................................................................................................ 20 0 1 2.00 2 2 0 0 0 0
...............GTTAGAGCTTGCGATTAA.......................................................................................................................................................................................................................... 18 0 1 2.00 2 2 0 0 0 0
.................................................AATAAATCATCAAACAAACGGGGAA................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0
......AGCCACTAAGTTAGAGCTTGCGATT............................................................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0
...........................................................................................TTTCACTTGACTTTTGGTTT............................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0
.....................................................................................................CTTTTGGTTTGGCTTTGAAAT................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0
.......................................................TCATCAAACAAACGGGGAAGTCTTG........................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
......................................................ATCATCAAACAAACGGGGAAGTCTTG........................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
.........CACTAAGTTAGAGCTTGCGATTAA.......................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0
.........CACTAAGTTAGAGCTTGCGAT............................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0
...............GTTAGAGCTTGCGATTAAATAAATAA.................................................................................................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0
...............................................................................................ACTTGACTTTTGGTTTGGCTTT...................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0
............................................................AAACAAACGGGGAAGTCTTGTAAT....................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0
...............................AAATAAATAAGCGCATATA......................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0
...........................................................................................................GTTTGGCTTTGAAATAAACA............................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0
...................................................................CGGGGAAGTCTTGTAATAAAAGTATT.............................................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0
...............................................................CAAACGGGGAAGTCTTGTAAT....................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
........................................................................................GTATTTCACTTGACTTTTGGT.............................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0
.....................................................AATCATCAAACAAACGGGGAA................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0
........CCACTAAGTTAGAGCTTGCGAT............................................................................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0
......................................................ATCATCAAACAAACGGGGAAGTCTTGTA......................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0
........................................................................................GTATTTCACTTGACTTTTGGTT............................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0
................................................................AAACGGGGAAGTCTTGTAA........................................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0
...............GTTAGAGCTTGCGATTAAATAAATAAGC................................................................................................................................................................................................................ 28 0 1 1.00 1 0 1 0 0 0
...........................................................................................................GTTTGGCTTTGAAATAAA.............................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0
...............................................................................................................................................................................................................TGTCTGGCCGTCTTCAAGC......................... 19 0 1 1.00 1 0 0 0 0 1
..........................................CGCATATAATAAATCATCAAACAAACGG..................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0
....................................................................................AAAAGTATTTCACTTGACT.................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0
.........................................................ATCAAACAAACGGGGAAGT............................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0
........CCACTAAGTTAGAGCTTGCGATTAA.......................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
................................................................AAACGGGGAAGTCTTGTAATAAAAG.................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0
.....AAGCCACTAAGTTAGAGCT................................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0
...........................................................................................CTTCACTTGACTTTTGGTTTGGCTTTG..................................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0
......................................................................GGAAGTCTTGTAATAAAA................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0
.............................................................AACAAACGGGGAAGTCTTGTA......................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
.............AAGTTAGAGCTTGCGATTAA.......................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0
.......................................................................................AGTATTTCACTTGACTTTTGG............................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
.........................................................................................TATTTCACTTGACTTTTGGT.............................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0
..........................................................................................ATTTCACTTGACTTTTGGTT............................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0
.........CACTAAGTTAGAGCTTGCGATTAAA......................................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0
..........................................................................................ATTTCACTTGACTTTTGGTTTGGCTTTG..................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0
......................................................ATCATCAAACAAACGGGGAAGTC.............................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0
........CCACTAAGTTAGAGCTTGCG............................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0
............................................................AAACAAACGGGGAAGTCTTGTA......................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0
...............................................................................................ACTTGACTTTTGGTTTGGCT........................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0
................................................................................................................................................................................................................GTCTGGCCGTCTTCAAGCCAAAAG................... 24 0 1 1.00 1 0 1 0 0 0
..................................................ATAAATCATCAAACAAACGGGGAAGT............................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
.................................................................................AATAAAAGTATTTCACTTGACT.................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0
..............AGTTAGAGCTTGCGATTAA.......................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0
.............................................................AACAAACGGGGAAGTCTTGTAATAAAAG.................................................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0
.......................................................................................................TTTGGTTTGGCTTTGAAATA................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0
...................................................................................TAAAAGTATTTCACTTGACT.................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0
...........................................................CAAACAAACGGGGAAGTCTTGTA......................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0
.......................................................TCATCAAACAAACGGGGAAGTCTTGTA......................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
........................................................................................................TTGGTTTGGCTTTGAAATAAACA............................................................................................................................ 23 0 1 1.00 1 0 1 0 0 0
.........................................................................................TATTTCACTTGACTTTTGGTTTG........................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0
...............GTTAGAGCTTGCGATTAAATAAAT.................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0
.................................................AATAAATCATCAAACAAAC....................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0
....................................................AAATCATCAAACAAACGGGGAAGT............................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0
.....................................................AATCATCAAACAAACGGGGAAGTCTTGT.......................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0
.........................................................................................................TGGTTTGGCTTTGAAATAAACA............................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0
.......................................................................................................TTTGGTTTGGCTTTGAAAT................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0
..............................TAAATAAATAAGCGCATATAATA...................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0
.........................................................ATCAAACAAACGGGGAAGTCTTGTAA........................................................................................................................................................................ 26 0 1 1.00 1 0 1 0 0 0
.....................................................................................AAAGTATTTCACTTGACTTTTGGTT............................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0
............................................................AAACAAACGGGGAAGTCTTG........................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0
...........................................................................................TTTCACTTGACTTTTGGTTTGGCTT....................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
.........................................................ATCAAACAAACGGGGAAG................................................................................................................................................................................ 18 0 1 1.00 1 1 0 0 0 0
....................................................AAATCATCAAACAAACGGGGAAG................................................................................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0
............................................................................................TTCACTTGACTTTTGGTTT............................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0
...........................................GCATATAATAAATCATCAAACAAACG...................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
...................................................................CGGGGAAGTCTTGTAATA...................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0
.......GCCACTAAGTTAGAGCTTG................................................................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0
.....................................................AATCATCAAACAAACGGGGA.................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0
.............................................ATATAATAAATCATCAAAC........................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0
.................TAGAGCTTGCGATTAAATAAATAAG................................................................................................................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0
.........................................................................................TATTTCACTTGACTTTTGG............................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0
.................................ATAAATAAGCGCATATAATA...................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0
..........................................................................................ATTTCACTTGACTTTTGGTTTGGCTTT...................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
............................................................................................................TTTGGCTTTGAAATAAACA............................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0
.................TAGAGCTTGCGATTAAATAAATAAGCGC.............................................................................................................................................................................................................. 28 0 1 1.00 1 0 1 0 0 0
..............................................TATAATAAATCATCAAACAAACGGGGAA................................................................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0
........................................................CATCAAACAAACGGGGAAG................................................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0
.........................................................................................................TGGTTTGGCTTTGAAATAAAC............................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0
....................................................................................AAAAGTATTTCACTTGACTTTTGGTTT............................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0
............................................................................................TTCACTTGACTTTTGGTTTGGCT........................................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0
..............................TAAATAAATAAGCGCATAT.......................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0
....................................................................................AAAAGTATTTCACTTGACTTTTGG............................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0
.....................................................................................AAAGTATTTCACTTGACTTTTG................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0
...................................................................CGGGGAAGTCTTGTAATAAAAGT................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0
....................................................................................................................................................................................................................................AAAAATGAAGCGCAATATGGGA. 22 3 4 0.25 1 0 1 0 0 0

Anti-sense strand reads

TCAGGTTCGGTGATTCAATCTCGAACGCTAATTTATTTATTCGCGTATATTATTTAGTAGTTTGTTTGCCCCTTCAGAACATTATTTTCATAAAGTGAACTGAAAACCAAACCGAAACTTTATTTGTCAATGTATATATGTATGTAAATTTTGACGTAATTTTACATTTAGATTAACTACGTAAGGTAAAACTTTATTATCGTTTCTACAGACCGGCAGAAGTTCGGTTTTCTACTTCTCGGTATACCCTC
*****************************************************************************************************************************.....((((((((((..(((((((..((((((....))))..))..))))))).)))))..))))).......***************************************************** 		Read size # Mismatch Hit Count Total Norm Total V056
head
 M046
female body
 V049
head
.......................................................................CTTCAGAACTTTAATTTCATAAT............................................................................................................................................................. 23 3 6 0.17 1 1 0 0
....................................................................CCCCTTCAGGACATGATC..................................................................................................................................................................... 18 3 18 0.06 1 0 1 0
..........................................................................................................CCAAACCGCAACTACATTT.............................................................................................................................. 19 3 20 0.05 1 0 1 0
...........................................................................AGAACATTATTGTCATGTA............................................................................................................................................................. 19 3 20 0.05 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6540:12951918-12952168 - dmo_1922 AGTC-CAAGCCAC-TAAGTT-AG-AG-CTTGCGATTAA-----ATAAATAAGCGCATATAATAA-AT---CATCAAACAAACGGGGAAGTCT-TGTAATAAAAGTA---TTTCAC-TTGACTTTTGGTTTGGCTTTGAAATAAACAGT--TACATATATA---CATACAT-----TT---------------------------------------------------------------------------------------------------------------------------A--------AAACTGCATT-A----AAA---------------TGTAAATC-TAATTGA-------------T----GCATTCCATTTTGAAATAATAGCAAAGATGTCTGGCCGTCTTCAAGCCAAAAGATGAAGAGCCATATGGGAG
droVir3 scaffold_13047:16643805-16644163 - dvi_17218 AGTC-CAAGGTGT-TAAGTC-TT-AGCCTTGAGATTAA--AACATTTGACAGTGCATAGATAAA-AT---ATTCTAACAAACGGGGAAGTCT-TGTAATTGAGTTA--TTTATAC-ATGACTTTTGGTTTGGCTTTGATACAAACATAT-T-----------TTATACAT-----TTTAAATTGTTTGCCTAACTATATTAATTTTACTTTTTGCATAAACAAAATTATTATTGAACTCTTGTTAATTTTCA-------------AAATCTATCAAAACCATTTTAGGTTTAGCTTAGAATATTGGGCT------------TATGCGTGTTAAT--A---AAATGTTAATTTTA------------------A----TTTG-------TCAAATTATAGCAGAGATGTCTGGCCGTCTTTAAGCCTAAGGATGAGGAGCCATATGGCAG
droGri2 scaffold_15116:1608683-1608944 - AATC-CAAGCTGT-CTAGTT-TA-AGCCTTGTGATTAGTTCGTCATAAATAGCGCACAGATTAA-CG---ATTCTAACAAACGGGGAAGTTT-TGCCATCAAGTTGT-TTTTTGC-AAAACTTTTGGTTTGGCTCTGATACAAAACAAA-T-----------A--A---TTACAATAAA------TAAT--------------------------------------------GAA----AGTTAAC--TCA-------------CAATCTT------------------------------------------------------------------TC---CAACATTT-TAAACGCTT---ATATA---T---TGCAT-----TTG------ATAGCACCGTTGCCTGGCCGTTTTTAAGCCCAAAGATGAGGAGCCCTATGGCAG
droWil2 scf2_1100000004943:3506499-3506704 + AGCC-CAAAACAT----------------------------------ATAGACGCATAGAGCAAATAT-AGTTCCAACAAACGGGGAAGTCC-TGCAATTGAGTTGAATTTTTAT-GGGACTTTTGGTTTAGATTGGACACATATT---------------------------------------------------------------------------------------------------------------------------GTG----------------------CATGTCATTCAATTA------------ACTAA---------------T-----------AATT---------TAATGTTGCTTATCC----TTAT---------TTAGCGCTGTGTTGCCGTATTTAAACCTAAAGATGAAGAGCCATACGGCCG
dp5 2:21209835-21210072 + GGGTTCTGGCCTAAAAAGTTGTG-GGTCCTGCAACCCA--AATAATAATCAACGCATAAATTAA-AG---ATTCTGGCAAACGGGGAAGTCCTTGCAATTTAGTTA---TTTTGC-AGAACTTTTGGTTTA-CCCAGATACAGTATCTC--------------CTT-----------------------------------------------------------------------------------------------------------------------------------GCCA--------GGGTTTCCTTAA----AGACAG-ATAT-----T-----------GATTGAACATT--TTA---T----GCT-------TT---------TCAGCAATGCCTGGCTGTGTTCAAGCCAAAGGATGAGGAACCCTATGGCCG
droPer2 scaffold_3:3988102-3988339 + GGGTTCTGGCCTAAAAAGTTGTG-GGCCCTGCAATCCA--AATAATAATCAACGCATAAATTAA-AG---ATTCTGGCAAACGGGGAAGTCCTTGCAATTTAGTTA---TTTTGC-AGAACTTTTGGTTTA-CCCAGATACAGTATCTC--------------CTT-----------------------------------------------------------------------------------------------------------------------------------GTCA--------GGGTTTCTTTAA----AGACAG-ATAT-----T-----------GATTGAACATT--TTA---T----GCT-------TT---------TCAGCAATGCCTGGCTATGTTCAAGCCAAAGGATGAGGATCCCTATGGCCG
droAna3 scaffold_13250:39091-39327 + AGCC-CTGGCCCT-CCATTT-TATTA-TTTTTTGCTC-----TGTTGGGCAGCGCACACATAAA--G---ATTCAGGCAATCGGGGAAGTCG-TGCACTGAAGCCA---GCTTGC-AGGACTTTTGGTTTGTTCCTGAGACAGCCTAGCTTAAGCTTAAATAT--A---T--------------------------------------------------------------------------------------------------------------------------------------------------------GCTAGACCTCAA-T----TG-----------ATGTAACT---AACC--CAT----GTTCCC--TAAT---------TTAGCATTGCTTGGCCGTTTTCAAGCCGAAAGATGAGGAACCCTACGGCAG
droBip1 scf7180000396413:593564-593680 + C-------------------------------------------TTGAGCAGCGCATACATTAA-AG---ATTCAGGCAATAGGGGAAGTCG-TGCACTAAAGATA---GCTTGC-AGGATTTTTGGTTTGTTCCTGGAACAGTTAATC-T-T----AAATAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCCTTATTTGA---------------------------
droKik1 scf7180000302461:807883-808107 - GCTT-TT-------------------------TTTTT-----TACTAATCCGCGCATATA--AT-AT--ACCTCAGGCAATCGGGGAAGTTT-TGCAATTAAGTCA--ACTTTGC-AGGACTTTTGGTTTGCACCTGAAACAGTCTAGC-A-G---------T--A---TTGTAGAGGG-----TTCTG------------------------------------------------------------CCGTTCTCG---------------------------------------GA--------------------------AAAGGCACC--AAAA---TAACG------AT---ACATT--TA---------CTTT----CCTT---------CTAGCACTGCCTAGCTGTGTTTAAGCCCAAGGACGAGGAGCCCTACGGCAG
droFic1 scf7180000453850:783923-784143 - AGAT-TGT----------------------------------AATTGATCTGCGCACATATAAA-TATCATATCAGGAAATCGGGGAAGTTC-TGCAGTTATTTTG--TT-TTGCGAGAACTTTTGGTTTGTTCCTGAAACAGTCAAC--TACGCTTGAAATT--A---TTTTTGGGTT------TTAC------------------------------------------------------------C----------------------------------------------------------------------A----AGATGCAAT-T----TG-----------ATGTGAATTTA--------T----TTTT----CCCC---------TTAGCAATGTCTGGCTGTTTTTAAGCCAAAGGATGAGGAGCCCTATGGCAG
droEle1 scf7180000491021:62639-62843 + AAT----------------------------------------------ACGCGCAAAGATAAA-CA---TGTCAGGAAATCGGGGAAGCCC-TGCAATTATGCTG--TTTTTGC-TGAGCTTTTGGTTTA-TCCTGAAACAGTCTAT--TATGCTTAAA--------------------------------------------------------------------------------------------------------------------------------------ATGGTCAATCGGTTC------------CACAAGATCCAAC--A---AT-----------AAGTAATTATA--------T----CTCT----CCGT---------TTAGCAATGCCTTGCTGTCTTCAAGCCAAAGGATGAGGAACCCTATGGCAG
droRho1 scf7180000776798:18166-18356 + A---------------------------------------------------------GATAAA-TA---TATCAGGAAATCGGGGAAGTTT-TGCAATTATGATG--TTTTTGC-AGATCTTTTGGGTTA-TCCTGCAACAGTCCATT-T--------------A---TTGTGATAAA------A------------------------------------------------------------------------------------------------------------ATGGTAAATCGGTTC------------CATAAGTTTTAAT--A---AT-----------------AAAT---------T----TTCT----CCGT---------TTAGCAATGTCTTGCTGTTTTCAAGCCAAAGGATGAGGAACCCTATGGCAG
droBia1 scf7180000302155:3388745-3388947 + AAT----------------------------------------------CCGCGCATAGACAAA-CA---AATCAGGAAATCGGGGAAGTCC-TGCAATTATGTTG--TTTTTGC-AGAACTTTTGGTTTA-TCCTGGGACATTATT---TACGCCTTTA---ATA-----------------------------------------------------------------------------------------------------------------------------------GTTA--------AGGCCTTCACAA----AGATAGCATT-----TT-----------AAATGGATTA---------T----TTCT----CTCT---------CAAGGAATGTCTGGCTGTATTCAAGCCCAAGGATGAGGAACCCTATGGCAG
droTak1 scf7180000415754:418855-419057 + AAT----------------------------------------------TTGCGCAAAGATAAA-TA---AATCAGGAATTCGGGGAAGTTC-TACAATTATGTTG--TTTTTGC-AGAACTTTTGGTTTATCCCTGAAACAGTCTAAC-T-A---------C--A---ATGTTTTATA------TCA----------------------------------------------------------------TTTACG-------TATTA---------------------------------------------------TGCTGGATT----------------------TAAGTAATT---TTT----------TCCT----TTCT---------TAAGCAATGCCTGGCTGTGTTCAAGCCTAAGGATGAGGAACCCTATGGCAG
droEug1 scf7180000409766:329080-329281 - ---------------------------------------------------GCGCAAAGATCAA-TT---AATCGGGAAATCGGGGAAGTCC-TGCAATCATGTTG--CCTTTGC-GGAACTTTTGGTTTATCTCTGAAACACTTTTAT-TAA---------T--C---TTGGAT-AGC------TTA------------------------------------------------------------------------------------------------------------------TCGATTA------------TATAAGACCCAAT-T----TC-----------TAGACATT---TACT----T----GTTT----TTCC---------TAAGCACTGTCTGGCTGTATTCAAGCCCAAGGATGAGGAACCCTATGGCAG
dm3 chr3R:1385478-1385692 - ---------------------------------------------------GCGCATAGATAAA-TA--AGATCGGGTAATCGGGGAAGTAC-TGCAAATATAAGG--CTTTTGC-AAAACTTTTGGTTTTTTCCTGAAACAGTTTCAA-A-A---------T--A---GTGAATTGTATATTGTTTAC------------------------------------------------------------CCGCTTATGCTCTATGTATTTAT------------------------------------------------------------------TA---TGCCA-----------TT---TCTTATGAT----GCTC----CCCC---------TTAGCAATGCCTGGCCGTATTTAAGCCAAAGGACGAGGAACCCTATGGCAG
droSim2 3r:1280659-1280865 - C--------------------------------------------------GCGCATAGATAAA-TA--AGATCAGGTAATCGGGGAAGTAC-TGCAAGTATAAGG--CTTTTGC-AAAACTTTTGGTTTTTTCCTGAAACAATTTCAA-A-A---------T--A---TTGTAGTGGA------TTAC------------------------------------------------------------CCGCTTATGCTTTACGTATTATT------------------------------------------------------------------TA---TGACA-----------TT---TCTTA---T----GCTT----TCCC---------CCAGCAATGCCTGGCCGTATTTAAGCCAAAGGACGAGGAACCCTATGGCAG
droSec2 scaffold_6:1500188-1500379 - ---------------------------------------------------GCGCATAGATAAA-TA--AGATCAGGTAATCGGGGAAGTAC-TGCAACTATAAGG--CTTTTGC-AAAACTTTTGGTTTTTTCCTGAAACAATTTCAA-A-A---------T--A---TTGTAGTGGA------TTAC------------------------------------------------------------CCG-------------TATTATT------------------------------------------------------------------TA---TGACA-----------TT---TCTTA---T----GCTT----TCCC---------CCAGCAATGCCTGGCCGTATTTAAGCCAAAGGACGAGGAACCCTAT-GCAG
droYak3 3R:17349273-17349486 - ---------------------------------------------------GCGCATAGATAAA-TA---AATCAGTTAATAGGGGAAGTTC-TGCAACTATAAG---CCTTTGC-AAAACTTTTGGTTTTTTTCTGAAACAGTAGAAA-A-A---------T--A---TTTTAGAAGA------ATAC------------------------------------------------------------CCGGTTATACTTTATATACTATT------------------------------------------------------------------TA---TTCCAATT-TAATCGATT---TCTTA---T----GTTT----TTCC---------TCAGCAATGTCTGGCTGTATTTAAGCCAAAGGACGAGGAGCCCTATGGTAG
droEre2 scaffold_4770:1654257-1654470 - ---------------------------------------------------GCGCATATATAAA-TA---AATCAGGTAATAGGGGAAGTGC-TGCAACTATAAGG--CTTTTGC-AAAACTTTTGGTTTTTTCCTGAAACAGTATAAA-A-A---------T--A---TTGTAATAGA------TGGC------------------------------------------------------------CGGGTTATACTAAATATATTATT------------------------------------------------------------------TT---TGTAATTT-TGAGTGATT---TCTT----T----GTAT----CCCC---------TCAGCAATGTCTGGCTGTATTTAAGCCGAAGGACGAGGAGCCCTATGGCAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
AGTC-CAAGCCAC-TAAGTT-AG-AG-CTTGCGATTAA-----ATAAATAAGCGCATATAATAA-AT---CATCAAACAAACGGGGAAGTCT-TGTAATAAAAGTA---TTTCAC-TTGACTTTTGGTTTGGCTTTGAAATAAACAGT--TACATATATA---CATACAT-----TT---------------------------------------------------------------------------------------------------------------------------A--------AAACTGCATT-A----AAA---------------TGTAAATC-TAATTGA-------------T----GCATTCCATTTTGAAATAATAGCAAAGATGTCTGGCCGTCTTCAAGCCAAAAGATGAAGAGCCATATGGGAGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................................................................................TTTGGTTTGGCTTTGAAATAAAC................................................................................................................................................................................................................................................................................................................23137.00372400319
..............................................................................................................................GTTTGGCTTTGAAATAAAC................................................................................................................................................................................................................................................................................................................19111.0011900002
.........................................................................................................................TTTTGGTTTGGCTTTGAAATAAAC................................................................................................................................................................................................................................................................................................................2418.008700001
........GCCAC-TAAGTT-AG-AG-CTTGCGATT.............................................................................................................................................................................................................................................................................................................................................................................................................................2417.007500002
.........CCAC-TAAGTT-AG-AG-CTTGCGATT.............................................................................................................................................................................................................................................................................................................................................................................................................................2314.004400000
...........................................................................................................................TTGGTTTGGCTTTGAAATAAAC................................................................................................................................................................................................................................................................................................................2214.004400000
...............................................................A-AT---CATCAAACAAACGGGGAAGTCT-TG..................................................................................................................................................................................................................................................................................................................................................................2713.003300000
.......................................................................................................................ACTTTTGGTTTGGCTTTGAAATAAAC................................................................................................................................................................................................................................................................................................................2613.003200001
............C-TAAGTT-AG-AG-CTTGCGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................1913.003300000
.......................................................................ATCAAACAAACGGGGAAGTCT-TGTA................................................................................................................................................................................................................................................................................................................................................................2513.003300000
......................................................................................................................GACTTTTGGTTTGGCTTTGAAATAAAC................................................................................................................................................................................................................................................................................................................2713.003200001
......................................................................CATCAAACAAACGGGGAAGTCT-TGT.................................................................................................................................................................................................................................................................................................................................................................2513.003300000
........................................................................................................TA---TTTCAC-TTGACTTTTGGTTT...............................................................................................................................................................................................................................................................................................................................2213.003300000
.........................................................................................................................TTTTGGTTTGGCTTTGAAATA...................................................................................................................................................................................................................................................................................................................2112.002200000
...................................................................................................AAAAGTA---TTTCAC-TTGACTTTTG...................................................................................................................................................................................................................................................................................................................................2312.002200000
.................................................................AT---CATCAAACAAACGGGGAAGTCT-TGT.................................................................................................................................................................................................................................................................................................................................................................2712.002200000
..............TAAGTT-AG-AG-CTTGCGATT.............................................................................................................................................................................................................................................................................................................................................................................................................................1912.002200000
....................................................CGCATATAATAA-AT---CATCAAAC...................................................................................................................................................................................................................................................................................................................................................................................2212.002200000
......................................................CATATAATAA-AT---CATCAAACA..................................................................................................................................................................................................................................................................................................................................................................................2112.002200000
...........................................................................AACAAACGGGGAAGTCT-TGT.................................................................................................................................................................................................................................................................................................................................................................2012.002100100
..........................................................................................CT-TGTAATAAAAGTA---TTTCAC-TTGACT.......................................................................................................................................................................................................................................................................................................................................2712.002200000
.................................................................................................ATAAAAGTA---TTTCAC-TTGACT.......................................................................................................................................................................................................................................................................................................................................2112.002200000
.....................................................................................................AAGTA---TTTCAC-TTGACTTTTGGTTT...............................................................................................................................................................................................................................................................................................................................2512.002200000
...................................TAA-----ATAAATAAGCGCATATAAT...................................................................................................................................................................................................................................................................................................................................................................................................2212.002100001
..................................................................................GGGGAAGTCT-TGTAATAAA...........................................................................................................................................................................................................................................................................................................................................................1912.002200000
..........CAC-TAAGTT-AG-AG-CTTGCGATT.............................................................................................................................................................................................................................................................................................................................................................................................................................2212.002100001
...............................................................................................................................TTTGGCTTTGAAATAAAC................................................................................................................................................................................................................................................................................................................1812.002200000
..........................................................................................................................TTTGGTTTGGCTTTGAAATAAACA...............................................................................................................................................................................................................................................................................................................2412.002000002
........................................................................................................................CTTTTGGTTTGGCTTTGAAATAAAC................................................................................................................................................................................................................................................................................................................2512.002100001
........................................................................................................TA---TTTCAC-TTGACTTTTGGTT................................................................................................................................................................................................................................................................................................................................2112.002200000
...........................CTTGCGATTAA-----ATAAATAAGCGC..........................................................................................................................................................................................................................................................................................................................................................................................................2312.002100001
.................................................................AT---CATCAAACAAACGGGGAA.........................................................................................................................................................................................................................................................................................................................................................................2012.002200000
........GCCAC-TAAGTT-AG-AG-CTTGCGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................2312.002200000
...................................................................................................AAAAGTA---TTTCAC-TTGACTTTTGGTT................................................................................................................................................................................................................................................................................................................................2612.002200000
............C-TAAGTT-AG-AG-CTTGCGATT.............................................................................................................................................................................................................................................................................................................................................................................................................................2012.002200000
.................GTT-AG-AG-CTTGCGATTAA-----......................................................................................................................................................................................................................................................................................................................................................................................................................1812.002200000
...........................................................AATAA-AT---CATCAAACAAACGGGGAA.........................................................................................................................................................................................................................................................................................................................................................................2511.001100000
.......AGCCAC-TAAGTT-AG-AG-CTTGCGATT.............................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
.............................................................................................................TTTCAC-TTGACTTTTGGTTT...............................................................................................................................................................................................................................................................................................................................2011.001100000
........................................................................................................................CTTTTGGTTTGGCTTTGAAAT....................................................................................................................................................................................................................................................................................................................2111.001100000
..................................................................T---CATCAAACAAACGGGGAAGTCT-TG..................................................................................................................................................................................................................................................................................................................................................................2511.001100000
.................................................................AT---CATCAAACAAACGGGGAAGTCT-TG..................................................................................................................................................................................................................................................................................................................................................................2611.001100000
..........CAC-TAAGTT-AG-AG-CTTGCGATTAA-----......................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
..........CAC-TAAGTT-AG-AG-CTTGCGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.................GTT-AG-AG-CTTGCGATTAA-----ATAAATAA..............................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
.................................................................................................................AC-TTGACTTTTGGTTTGGCTTT.........................................................................................................................................................................................................................................................................................................................2211.001100000
..........................................................................AAACAAACGGGGAAGTCT-TGTAAT..............................................................................................................................................................................................................................................................................................................................................................2411.001100000
....................................AA-----ATAAATAAGCGCATATA.....................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
..............................................................................................................................GTTTGGCTTTGAAATAAACA...............................................................................................................................................................................................................................................................................................................2011.001100000
.................................................................................CGGGGAAGTCT-TGTAATAAAAGTA---TT..................................................................................................................................................................................................................................................................................................................................................2611.001000001
.............................................................................CAAACGGGGAAGTCT-TGTAAT..............................................................................................................................................................................................................................................................................................................................................................2111.001100000
.......................................................................................................GTA---TTTCAC-TTGACTTTTGGT.................................................................................................................................................................................................................................................................................................................................2111.001100000
...............................................................A-AT---CATCAAACAAACGGGGAA.........................................................................................................................................................................................................................................................................................................................................................................2111.001000001
.........CCAC-TAAGTT-AG-AG-CTTGCGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.................................................................AT---CATCAAACAAACGGGGAAGTCT-TGTA................................................................................................................................................................................................................................................................................................................................................................2811.001100000
.......................................................................................................GTA---TTTCAC-TTGACTTTTGGTT................................................................................................................................................................................................................................................................................................................................2211.001100000
..............................................................................AAACGGGGAAGTCT-TGTAA...............................................................................................................................................................................................................................................................................................................................................................1911.001100000
.................GTT-AG-AG-CTTGCGATTAA-----ATAAATAAGC............................................................................................................................................................................................................................................................................................................................................................................................................2811.001000001
..............................................................................................................................GTTTGGCTTTGAAATAAA.................................................................................................................................................................................................................................................................................................................1811.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................TGTCTGGCCGTCTTCAAGC.........................1911.001010000
....................................................CGCATATAATAA-AT---CATCAAACAAACGG.............................................................................................................................................................................................................................................................................................................................................................................2811.001100000
...................................................................................................AAAAGTA---TTTCAC-TTGACT.......................................................................................................................................................................................................................................................................................................................................1911.001100000
.......................................................................ATCAAACAAACGGGGAAGT.......................................................................................................................................................................................................................................................................................................................................................................1911.001000001
.........CCAC-TAAGTT-AG-AG-CTTGCGATTAA-----......................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
..............................................................................AAACGGGGAAGTCT-TGTAATAAAAG.........................................................................................................................................................................................................................................................................................................................................................2511.001100000
......AAGCCAC-TAAGTT-AG-AG-CT....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
....................................................................................GGAAGTCT-TGTAATAAAA..........................................................................................................................................................................................................................................................................................................................................................1811.001100000
...........................................................................AACAAACGGGGAAGTCT-TGTA................................................................................................................................................................................................................................................................................................................................................................2111.001100000
...............AAGTT-AG-AG-CTTGCGATTAA-----......................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
......................................................................................................AGTA---TTTCAC-TTGACTTTTGG..................................................................................................................................................................................................................................................................................................................................2111.001100000
........................................................................................................TA---TTTCAC-TTGACTTTTGGT.................................................................................................................................................................................................................................................................................................................................2011.001100000
.........................................................................................................A---TTTCAC-TTGACTTTTGGTT................................................................................................................................................................................................................................................................................................................................2011.001100000
..........CAC-TAAGTT-AG-AG-CTTGCGATTAA-----A.....................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
.........................................................................................................A---TTTCAC-TTGACTTTTGGTTTGGCTTTG........................................................................................................................................................................................................................................................................................................................2811.001100000
.................................................................AT---CATCAAACAAACGGGGAAGTC......................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.........CCAC-TAAGTT-AG-AG-CTTGCG................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
..........................................................................AAACAAACGGGGAAGTCT-TGTA................................................................................................................................................................................................................................................................................................................................................................2211.001000001
.................................................................................................................AC-TTGACTTTTGGTTTGGCT...........................................................................................................................................................................................................................................................................................................................2011.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGGCCGTCTTCAAGCCAAAAG...................2411.001000001
............................................................ATAA-AT---CATCAAACAAACGGGGAAGT.......................................................................................................................................................................................................................................................................................................................................................................2611.001100000
................................................................................................AATAAAAGTA---TTTCAC-TTGACT.......................................................................................................................................................................................................................................................................................................................................2211.001100000
................AGTT-AG-AG-CTTGCGATTAA-----......................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
...........................................................................AACAAACGGGGAAGTCT-TGTAATAAAAG.........................................................................................................................................................................................................................................................................................................................................................2811.001100000
..........................................................................................................................TTTGGTTTGGCTTTGAAATA...................................................................................................................................................................................................................................................................................................................2011.001100000
..................................................................................................TAAAAGTA---TTTCAC-TTGACT.......................................................................................................................................................................................................................................................................................................................................2011.001100000
.........................................................................CAAACAAACGGGGAAGTCT-TGTA................................................................................................................................................................................................................................................................................................................................................................2311.001100000
..................................................................T---CATCAAACAAACGGGGAAGTCT-TGTA................................................................................................................................................................................................................................................................................................................................................................2711.001100000
...........................................................................................................................TTGGTTTGGCTTTGAAATAAACA...............................................................................................................................................................................................................................................................................................................2311.001000001
........................................................................................................TA---TTTCAC-TTGACTTTTGGTTTG..............................................................................................................................................................................................................................................................................................................................2311.001100000
.................GTT-AG-AG-CTTGCGATTAA-----ATAAAT................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
...........................................................AATAA-AT---CATCAAACAAAC...............................................................................................................................................................................................................................................................................................................................................................................1911.001100000
..............................................................AA-AT---CATCAAACAAACGGGGAAGT.......................................................................................................................................................................................................................................................................................................................................................................2411.001000001
...............................................................A-AT---CATCAAACAAACGGGGAAGTCT-TGT.................................................................................................................................................................................................................................................................................................................................................................2811.001100000
............................................................................................................................TGGTTTGGCTTTGAAATAAACA...............................................................................................................................................................................................................................................................................................................2211.001100000
..........................................................................................................................TTTGGTTTGGCTTTGAAAT....................................................................................................................................................................................................................................................................................................................1911.001100000
...................................TAA-----ATAAATAAGCGCATATAATA..................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
.......................................................................ATCAAACAAACGGGGAAGTCT-TGTAA...............................................................................................................................................................................................................................................................................................................................................................2611.001000001
....................................................................................................AAAGTA---TTTCAC-TTGACTTTTGGTT................................................................................................................................................................................................................................................................................................................................2511.001100000
..........................................................................AAACAAACGGGGAAGTCT-TG..................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.............................................................................................................TTTCAC-TTGACTTTTGGTTTGGCTT..........................................................................................................................................................................................................................................................................................................................2511.001100000
.......................................................................ATCAAACAAACGGGGAAG........................................................................................................................................................................................................................................................................................................................................................................1811.001100000
..............................................................AA-AT---CATCAAACAAACGGGGAAG........................................................................................................................................................................................................................................................................................................................................................................2311.001100000
..............................................................................................................TTCAC-TTGACTTTTGGTTT...............................................................................................................................................................................................................................................................................................................................1911.001100000
.....................................................GCATATAATAA-AT---CATCAAACAAACG..............................................................................................................................................................................................................................................................................................................................................................................2611.001100000
.................................................................................CGGGGAAGTCT-TGTAATA.............................................................................................................................................................................................................................................................................................................................................................1811.001100000
........GCCAC-TAAGTT-AG-AG-CTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
...............................................................A-AT---CATCAAACAAACGGGGA..........................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.......................................................ATATAATAA-AT---CATCAAAC...................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
...................T-AG-AG-CTTGCGATTAA-----ATAAATAAG.............................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
........................................................................................................TA---TTTCAC-TTGACTTTTGG..................................................................................................................................................................................................................................................................................................................................1911.001100000
...........................................ATAAATAAGCGCATATAATA..................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
.........................................................................................................A---TTTCAC-TTGACTTTTGGTTTGGCTTT.........................................................................................................................................................................................................................................................................................................................2711.001100000
...............................................................................................................................TTTGGCTTTGAAATAAACA...............................................................................................................................................................................................................................................................................................................1911.001100000
...................T-AG-AG-CTTGCGATTAA-----ATAAATAAGCGC..........................................................................................................................................................................................................................................................................................................................................................................................................2811.001000001
........................................................TATAATAA-AT---CATCAAACAAACGGGGAA.........................................................................................................................................................................................................................................................................................................................................................................2811.001100000
......................................................................CATCAAACAAACGGGGAAG........................................................................................................................................................................................................................................................................................................................................................................1911.001100000
............................................................................................................................TGGTTTGGCTTTGAAATAAAC................................................................................................................................................................................................................................................................................................................2111.001100000
...................................................................................................AAAAGTA---TTTCAC-TTGACTTTTGGTTT...............................................................................................................................................................................................................................................................................................................................2711.001100000
..............................................................................................................TTCAC-TTGACTTTTGGTTTGGCT...........................................................................................................................................................................................................................................................................................................................2311.001100000
...................................TAA-----ATAAATAAGCGCATAT......................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
...................................................................................................AAAAGTA---TTTCAC-TTGACTTTTGG..................................................................................................................................................................................................................................................................................................................................2411.001100000
....................................................................................................AAAGTA---TTTCAC-TTGACTTTTG...................................................................................................................................................................................................................................................................................................................................2211.001100000
.................................................................................CGGGGAAGTCT-TGTAATAAAAGT........................................................................................................................................................................................................................................................................................................................................................2311.001100000
droVir3
AGTC-CAAGGTGT-TAAGTC-TT-AGCCTTGAGATTAA--AACATTTGACAGTGCATAGATAAA-AT---ATTCTAACAAACGGGGAAGTCT-TGTAATTGAGTTA--TTTATAC-ATGACTTTTGGTTTGGCTTTGATACAAACATAT-T-----------TTATACAT-----TTTAAATTGTTTGCCTAACTATATTAATTTTACTTTTTGCATAAACAAAATTATTATTGAACTCTTGTTAATTTTCA-------------AAATCTATCAAAACCATTTTAGGTTTAGCTTAGAATATTGGGCT------------TATGCGTGTTAAT--A---AAATGTTAATTTTA------------------A----TTTG-------TCAAATTATAGCAGAGATGTCTGGCCGTCTTTAAGCCTAAGGATGAGGAGCCATATGGCAGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................................................................................TTTTGGTTTGGCTTTGATACAAAC................................................................................................................................................................................................................................................................................................................24119.00191020000000000000000000000000000000000000000000000000000000000115
..........................................................................................................................TTTGGTTTGGCTTTGATACAAAC................................................................................................................................................................................................................................................................................................................23116.0016006100000000000000000000000000000010000000000000000000000001016
........................................................................................................................CTTTTGGTTTGGCTTTGATACAAAC................................................................................................................................................................................................................................................................................................................2519.009000000000000000000000000000000000000000000000000000000000001008
......................................................................................................................GACTTTTGGTTTGGCTTTGATACAAAC................................................................................................................................................................................................................................................................................................................2718.008003100100000000100000000000001100000000000000000000000000000000
...........................................................................................................................TTGGTTTGGCTTTGATACAAAC................................................................................................................................................................................................................................................................................................................2216.006002000000000000000000000000000000000000000000000000000000000004
.......................................................................................................................ACTTTTGGTTTGGCTTTGATACAAAC................................................................................................................................................................................................................................................................................................................2614.004211000000000000000000000000000000000000000000000000000000000000
....................................................................................................................ATGACTTTTGGTTTGGCTTTGATACAAAC................................................................................................................................................................................................................................................................................................................2912.002000000000000000000000000000000000000000000000000000000000000002
.........................................................................CTAACAAACGGGGAAGTCT-T...................................................................................................................................................................................................................................................................................................................................................................2012.002001000000000000000000000000000000000000000000000000000000000010
.........................................................................................................................TTTTGGTTTGGCTTTGATACAAA.................................................................................................................................................................................................................................................................................................................2312.002000000000000000000000000000000000000000000000000000000000000002
.....................................................................................................................TGACTTTTGGTTTGGCTTTGATACAAAC................................................................................................................................................................................................................................................................................................................2812.002001000000000000000000000000000000000000000000000000000000010000
..............................................................................................................TATAC-ATGACTTTTGGTTTGGCTTTG........................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGGATGAGGAGCCATATGG...2111.001000000010000000000000000000000000000000000000000000000000000000
..............................................................................................................................GTTTGGCTTTGATACAAAC................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................TTTTGGTTTGGCTTTGAT......................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000001
....................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCTGGCCGTCTTTAAG..........................1911.001000000000000000000000000000000000000010000000000000000000000000
........GGTGT-TAAGTC-TT-AGCCTTGAGATT.............................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
.......................................................................................AGTCT-TGTAATTGAGTTA--TTTATAC-.............................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................TGGTTTGGCTTTGATACA...................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................TGACTTTTGGTTTGGCTTTGATA.....................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000001000
................................................................................................AATTGAGTTA--TTTATAC-ATGA.........................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAAGCCTAAGGATGAGGAGCCA........2511.001000000000010000000000000000000000000000000000000000000000000000
.........................................................................................................A--TTTATAC-ATGACTTTTGGT.................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000001
...................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGCCTAAGGATGAGGAGCCAT.......2311.001000000010000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCTAAGGATGAGGAGCCA........2011.001000000010000000000000000000000000000000000000000000000000000000
...........................................................................................................................TTGGTTTGGCTTTGATACAAACA...............................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000010000
...........GT-TAAGTC-TT-AGCCTTGAGATTAA--AAC......................................................................................................................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
...........................................ATTTGACAGTGCATAGATAAA-AT---...........................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000010000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................GATGTCTGGCCGTCTTTAAGCCTAAG....................2611.001000000000000000000000000000000000001000000000000000000000000000
.........GTGT-TAAGTC-TT-AGCCTTGAGATTAA--.........................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000100000000000000000000000000000000000000000000000000000000000
.......................................................................................................................ACTTTTGGTTTGGCTTTGATACAAA.................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTAAGGATGAGGAGCC.........1811.001000000001000000000000000000000000000000000000000000000000000000
.........................................................................................................A--TTTATAC-ATGACTTTTGGTTTGGC............................................................................................................................................................................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
.........................................................................................................................TTTTGGTTTGGCTTTGATACAAACA...............................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000001
...........................................................................AACAAACGGGGAAGTCT-TGT.................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
...............................................................................AACGGGGAAGTCT-TGTAATTGA...........................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
...........................................................................................................................................................................................................................................................................................................................................................................................................ATAGCAGAGATGTCTGGCCGTCTTTAA...........................2711.001000000000000000000000000000001000000000000000000000000000000000
...................................................GTGCATAGATAAA-AT---ATTCTAACAAACG..............................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000001000000000000000000000000000000000000000000000000
droGri2
AATC-CAAGCTGT-CTAGTT-TA-AGCCTTGTGATTAGTTCGTCATAAATAGCGCACAGATTAA-CG---ATTCTAACAAACGGGGAAGTTT-TGCCATCAAGTTGT-TTTTTGC-AAAACTTTTGGTTTGGCTCTGATACAAAACAAA-T-----------A--A---TTACAATAAA------TAAT--------------------------------------------GAA----AGTTAAC--TCA-------------CAATCTT------------------------------------------------------------------TC---CAACATTT-TAAACGCTT---ATATA---T---TGCAT-----TTG------ATAGCACCGTTGCCTGGCCGTTTTTAAGCCCAAAGATGAGGAGCCCTATGGCAGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
......................................................................................................................AACTTTTGGTTTGGCTCTGATACAAAA................................................................................................................................................................................................................................................................................................................2712.00211
.........................................................................................................................TTTTGGTTTGGCTCTGATACAAAA................................................................................................................................................................................................................................................................................................................2411.00101
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGATGAGGAGCCCTAT.....1911.00110
............................................ATAAATAGCGCACAGATTAA-CG---...........................................................................................................................................................................................................................................................................................................................................................................................2211.00110
..........................................................................TAACAAACGGGGAAGTTT-TGCCATC.............................................................................................................................................................................................................................................................................................................................................................2511.00110
droWil2
AGCC-CAAAACAT----------------------------------ATAGACGCATAGAGCAAATAT-AGTTCCAACAAACGGGGAAGTCC-TGCAATTGAGTTGAATTTTTAT-GGGACTTTTGGTTTAGATTGGACACATATT---------------------------------------------------------------------------------------------------------------------------GTG----------------------CATGTCATTCAATTA------------ACTAA---------------T-----------AATT---------TAATGTTGCTTATCC----TTAT---------TTAGCGCTGTGTTGCCGTATTTAAACCTAAAGATGAAGAGCCATACGGCCGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................................................................................................................TTTGGTTTAGATTGGACACATAT................................................................................................................................................................................................................................................................................................................23131.0031022306
................................................................................................AATTGAGTTGAATTTTTAT-GGGACT.......................................................................................................................................................................................................................................................................................................................................25113.001314800
.........................................................................................................................TTTTGGTTTAGATTGGACACATAT................................................................................................................................................................................................................................................................................................................24110.001002602
.......................................................................................................................ACTTTTGGTTTAGATTGGACACATAT................................................................................................................................................................................................................................................................................................................2616.00600222
.............................................................................................................................GGTTTAGATTGGACACATAT................................................................................................................................................................................................................................................................................................................2016.00600105
............................................................................................................................TGGTTTAGATTGGACACATAT................................................................................................................................................................................................................................................................................................................2116.00601005
........................................................................................................................CTTTTGGTTTAGATTGGACACATAT................................................................................................................................................................................................................................................................................................................2516.00601311
...........................................................................................................................TTGGTTTAGATTGGACACATAT................................................................................................................................................................................................................................................................................................................2215.00500203
....................................................CGCATAGAGCAAATAT-AGTTCCAACAAA................................................................................................................................................................................................................................................................................................................................................................................2814.00400013
..........................................................................................................................TTTGGTTTAGATTGGACACATATT---------------------------------------------------------------------------------------------------------------------------....................................................................................................................................................................................2413.00300210
..........................................................................................................................TTTGGTTTAGATTGGACACAT..................................................................................................................................................................................................................................................................................................................2113.00301200
................................................................................................AATTGAGTTGAATTTTTAT-GGGA.........................................................................................................................................................................................................................................................................................................................................2313.00300300
.........................................................................................................................TTTTGGTTTAGATTGGACACATATT---------------------------------------------------------------------------------------------------------------------------....................................................................................................................................................................................2513.00300021
.................................................................................................ATTGAGTTGAATTTTTAT-GGGACT.......................................................................................................................................................................................................................................................................................................................................2413.00300300
......................................................................................................................GACTTTTGGTTTAGATTGGACACATAT................................................................................................................................................................................................................................................................................................................2713.00301002
..........................................................................................................................TTTGGTTTAGATTGGACACATA.................................................................................................................................................................................................................................................................................................................2213.00310200
.........................................................................................................................TTTTGGTTTAGATTGGACACATA.................................................................................................................................................................................................................................................................................................................2312.00210001
.......................................................................................................................ACTTTTGGTTTAGATTGGACACAT..................................................................................................................................................................................................................................................................................................................2412.00200002
...........................................................................................................ATTTTTAT-GGGACTTTTGGT.................................................................................................................................................................................................................................................................................................................................2012.00200110
.............................................................................................................................GGTTTAGATTGGACACATATT---------------------------------------------------------------------------------------------------------------------------....................................................................................................................................................................................2112.00200002
.GCC-CAAAACAT----------------------------------ATAGACGCATAGAGCA..................................................................................................................................................................................................................................................................................................................................................................................................2712.00200200
.......................................................................................................................ACTTTTGGTTTAGATTGGACACATATT---------------------------------------------------------------------------------------------------------------------------....................................................................................................................................................................................2712.00200020
.................................................................TAT-AGTTCCAACAAACGGGGAA.........................................................................................................................................................................................................................................................................................................................................................................2211.00100100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AACCTAAAGATGAAGAGCCATACGGC..2611.00100100
...............................................................................................................................TTTAGATTGGACACATATT---------------------------------------------------------------------------------------------------------------------------....................................................................................................................................................................................1911.00100010
........................................................................................................................CTTTTGGTTTAGATTGGACACAT..................................................................................................................................................................................................................................................................................................................2311.00100100
....................................................................................................GAGTTGAATTTTTAT-GGGACT.......................................................................................................................................................................................................................................................................................................................................2111.00110000
...........................................................................................................................TTGGTTTAGATTGGACACATATT---------------------------------------------------------------------------------------------------------------------------....................................................................................................................................................................................2311.00100001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGATGAAGAGCCATACGGCC.2211.00100100
........................................................................................................................CTTTTGGTTTAGATTGGACACATATT---------------------------------------------------------------------------------------------------------------------------....................................................................................................................................................................................2611.00100010
.....................................................................................................AGTTGAATTTTTAT-GGGACTTTTGGT.................................................................................................................................................................................................................................................................................................................................2611.00100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................AAACCTAAAGATGAAGAGC..........1911.00100010
..................................................................AT-AGTTCCAACAAACGGGGAAGTCC-TGCA................................................................................................................................................................................................................................................................................................................................................................2911.00100100
....................................................CGCATAGAGCAAATAT-AGTTCCAACA..................................................................................................................................................................................................................................................................................................................................................................................2611.00100010
..................................................................AT-AGTTCCAACAAACGGGGAA.........................................................................................................................................................................................................................................................................................................................................................................2111.00100010
.......AAACAT----------------------------------ATAGACGCATAGAGCAA.................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
........................................................................................................TGAATTTTTAT-GGGACTTTTGGT.................................................................................................................................................................................................................................................................................................................................2311.00100100
..............................................................................................................................GTTTAGATTGGACACATA.................................................................................................................................................................................................................................................................................................................1811.00100001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGATGAAGAGCCATACGGC..2111.00100100
...........................................................................................................................TTGGTTTAGATTGGACACA...................................................................................................................................................................................................................................................................................................................1911.00110000
...........................................................................................C-TGCAATTGAGTTGAATTTTTAT-GGGAC........................................................................................................................................................................................................................................................................................................................................2811.00100100
...................................................................................................TGAGTTGAATTTTTAT-GGGA.........................................................................................................................................................................................................................................................................................................................................2011.00100100
......................................................................................AAGTCC-TGCAATTGAGTTGAA.....................................................................................................................................................................................................................................................................................................................................................2111.00100001
..............................................................................................................................GTTTAGATTGGACACATATT---------------------------------------------------------------------------------------------------------------------------G...................................................................................................................................................................................2111.00100001
..........................................................................................................................TTTGGTTTAGATTGGACACA...................................................................................................................................................................................................................................................................................................................2011.00101000
......................................................................................AAGTCC-TGCAATTGAGTTGA......................................................................................................................................................................................................................................................................................................................................................2011.00100001
..............................................................................................................................GTTTAGATTGGACACATAT................................................................................................................................................................................................................................................................................................................1911.00100100
.........................................................................................................................TTTTGGTTTAGATTGGACACAT..................................................................................................................................................................................................................................................................................................................2211.00100001
......................................................................................................GTTGAATTTTTAT-GGGACT.......................................................................................................................................................................................................................................................................................................................................1911.00100100
..............................................................AAATAT-AGTTCCAACAAACGGGGAAGTC......................................................................................................................................................................................................................................................................................................................................................................2811.00100100
...............................................................AATAT-AGTTCCAACAAACGGGGAAGTC......................................................................................................................................................................................................................................................................................................................................................................2711.00100100
.................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAACCTAAAGATGAAGAG...........2111.00101000
.................................................................................................ATTGAGTTGAATTTTTAT-GGGACTT......................................................................................................................................................................................................................................................................................................................................2511.00100100
...............................................................................................................................TTTAGATTGGACACATAT................................................................................................................................................................................................................................................................................................................1811.00100001
..........................................................................................................................TTTGGTTTAGATTGGACACATATT---------------------------------------------------------------------------------------------------------------------------GTG----------------------C..........................................................................................................................................................2811.00101000
.....................................................................................................................GGACTTTTGGTTTAGATTGGACACAT..................................................................................................................................................................................................................................................................................................................2611.00100001
..............................................................................................................................GTTTAGATTGGACACATATT---------------------------------------------------------------------------------------------------------------------------....................................................................................................................................................................................2011.00100001
dp5
GGGTTCTGGCCTAAAAAGTTGTG-GGTCCTGCAACCCA--AATAATAATCAACGCATAAATTAA-AG---ATTCTGGCAAACGGGGAAGTCCTTGCAATTTAGTTA---TTTTGC-AGAACTTTTGGTTTA-CCCAGATACAGTATCTC--------------CTT-----------------------------------------------------------------------------------------------------------------------------------GCCA--------GGGTTTCCTTAA----AGACAG-ATAT-----T-----------GATTGAACATT--TTA---T----GCT-------TT---------TCAGCAATGCCTGGCTGTGTTCAAGCCAAAGGATGAGGAACCCTATGGCCGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....................................................CGCATAAATTAA-AG---ATTCTGGCAAAC...............................................................................................................................................................................................................................................................................................................................................................................2622.5050050000000
....................................................CGCATAAATTAA-AG---ATTCTGGCAAACGG.............................................................................................................................................................................................................................................................................................................................................................................2822.0041010000002
.......................................................................TTCTGGCAAACGGGGAAGTCCTTGC.................................................................................................................................................................................................................................................................................................................................................................2521.5030000102000
...................................................ACGCATAAATTAA-AG---ATTCTGGCAAAC...............................................................................................................................................................................................................................................................................................................................................................................2721.0020001001000
....................................................CGCATAAATTAA-AG---ATTCTGGCAAA................................................................................................................................................................................................................................................................................................................................................................................2521.0020100000001
..........CTAAAAAGTTGTG-GGTCCTGCAACCC............................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100000
..........................................................................................................................TTTGGTTTA-CCCAGATACAGTAT...............................................................................................................................................................................................................................................................................................................2321.0020100100000
..................................................AACGCATAAATTAA-AG---ATTCTGGCAAA................................................................................................................................................................................................................................................................................................................................................................................2721.0020200000000
.........................................................................................................A---TTTTGC-AGAACTTTTGGT.................................................................................................................................................................................................................................................................................................................................1920.5010010000000
.......................................................................TTCTGGCAAACGGGGAAG........................................................................................................................................................................................................................................................................................................................................................................1820.5010100000000
.......................................................................TTCTGGCAAACGGGGAAGTCT.....................................................................................................................................................................................................................................................................................................................................................................2120.5010000001000
................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGCCAAAGGATGAGGA............2120.5010100000000
.................................................................................................ATTTAGTTA---TTTTGC-AGAAC........................................................................................................................................................................................................................................................................................................................................2020.5011000000000
................................................................................................AATTTAGTTA---TTTTGC-AGAACT.......................................................................................................................................................................................................................................................................................................................................2220.5010100000000
..................................................AACGCATAAATTAA-AG---ATTCTGGCAAAC...............................................................................................................................................................................................................................................................................................................................................................................2820.5011000000000
......................................................................ATTCTGGCAAACGGGGAAGTCCTTGC.................................................................................................................................................................................................................................................................................................................................................................2620.5010010000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCAAGCCAAAGGATGAGG.............2120.5010000001000
....................................................CGCATAAATTAA-AG---ATTCTGGCAAACG..............................................................................................................................................................................................................................................................................................................................................................................2720.5010100000000
....................................................CGCATAAATTAA-AG---ATTCTGGCAAACGGG............................................................................................................................................................................................................................................................................................................................................................................2920.5010010000000
.....................................................GCATAAATTAA-AG---ATTCTGGCAA.................................................................................................................................................................................................................................................................................................................................................................................2320.5010100000000
.........................................................................................................A---TTTTGC-AGAACTTTTGGTTTA-CCCA.........................................................................................................................................................................................................................................................................................................................2620.5010100000000
..........................................................................................................................TTTGGTTTA-CCCAGATACAGTA................................................................................................................................................................................................................................................................................................................2220.5010100000000
....................................................CGCATAAATTAA-AG---ATTCTGGCAA.................................................................................................................................................................................................................................................................................................................................................................................2420.5010100000000
................................................TCAACGCATAAATTAA-AG---ATTCTGGCAA.................................................................................................................................................................................................................................................................................................................................................................................2820.5010100000000
.....................................................GCATAAATTAA-AG---ATTCTGGCA..................................................................................................................................................................................................................................................................................................................................................................................2220.5010100000000
droPer2
GGGTTCTGGCCTAAAAAGTTGTG-GGCCCTGCAATCCA--AATAATAATCAACGCATAAATTAA-AG---ATTCTGGCAAACGGGGAAGTCCTTGCAATTTAGTTA---TTTTGC-AGAACTTTTGGTTTA-CCCAGATACAGTATCTC--------------CTT-----------------------------------------------------------------------------------------------------------------------------------GTCA--------GGGTTTCTTTAA----AGACAG-ATAT-----T-----------GATTGAACATT--TTA---T----GCT-------TT---------TCAGCAATGCCTGGCTATGTTCAAGCCAAAGGATGAGGATCCCTATGGCCGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................................................................ATTTAGTTA---TTTTGC-AGAACT.......................................................................................................................................................................................................................................................................................................................................21310.33313100000
................................................................................................AATTTAGTTA---TTTTGC-AGAACT.......................................................................................................................................................................................................................................................................................................................................2237.67232300000
................................................................................................AATTTAGTTA---TTTTGC-AGAAC........................................................................................................................................................................................................................................................................................................................................2132.006600000
....................................................................................................................AGAACTTTTGGTTTA-CCC..........................................................................................................................................................................................................................................................................................................................1831.334400000
.......................................................................TTCTGGCAAACGGGGAAGTCCTTGC.................................................................................................................................................................................................................................................................................................................................................................2531.334002101
....................................................CGCATAAATTAA-AG---ATTCTGGCAAACGGG............................................................................................................................................................................................................................................................................................................................................................................2931.003300000
.............................................................................................................TTTTGC-AGAACTTTTGGTTTA-CCC..........................................................................................................................................................................................................................................................................................................................2431.003300000
..........CTAAAAAGTTGTG-GGCCCTGC.................................................................................................................................................................................................................................................................................................................................................................................................................................2130.672200000
..............................................................................................................TTTGC-AGAACTTTTGGTT................................................................................................................................................................................................................................................................................................................................1830.672200000
.........................................................AAATTAA-AG---ATTCTGGCAAA................................................................................................................................................................................................................................................................................................................................................................................2030.672200000
.......................................................ATAAATTAA-AG---ATTCTGGC...................................................................................................................................................................................................................................................................................................................................................................................1930.672200000
.....................................................................................................................GAACTTTTGGTTTA-CCCAGATACAGTA................................................................................................................................................................................................................................................................................................................2730.672020000
.......................................................................TTCTGGCAAACGGGGAAGTCCTTGCAA...............................................................................................................................................................................................................................................................................................................................................................2730.672000002
...........................................................................................................................TTGGTTTA-CCCAGATACAGTA................................................................................................................................................................................................................................................................................................................2130.672001001
....................................................CGCATAAATTAA-AG---ATTCTGGCA..................................................................................................................................................................................................................................................................................................................................................................................2330.672000002
..................................................................................................TTTAGTTA---TTTTGC-AGAACT.......................................................................................................................................................................................................................................................................................................................................2030.672200000
..............................................................................................................TTTGC-AGAACTTTTGGTTTA-CC...........................................................................................................................................................................................................................................................................................................................2230.672200000
....................................................CGCATAAATTAA-AG---ATTCTGGCAAACGG.............................................................................................................................................................................................................................................................................................................................................................................2830.672200000
.............................................................................................................................................................................................................................................................................................................................................................................................................................TATGTTCAAGCCAAAGGATG................2020.501010000
.............AAAAGTTGTG-GGCCCTGCAATC.............................................................................................................................................................................................................................................................................................................................................................................................................................2220.501100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGCCAAAGGATGAGGATCC.........2120.501000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................TATGTTCAAGCCAAAGGATGAGG.............2320.501000001
................................................................................................................TGC-AGAACTTTTGGTTTA-CCCA.........................................................................................................................................................................................................................................................................................................................2230.331010000
...............................................................................................CAATTTAGTTA---TTTTGC-AGAACT.......................................................................................................................................................................................................................................................................................................................................2330.331100000
...................................................ACGCATAAATTAA-AG---ATTCTGGCAAA................................................................................................................................................................................................................................................................................................................................................................................2630.331010000
........................................................................................................TA---TTTTGC-AGAACTTTTGGT.................................................................................................................................................................................................................................................................................................................................2030.331010000
................................................................................................AATTTAGTTA---TTTTGC-AGAACTTTTGGTT................................................................................................................................................................................................................................................................................................................................2930.331100000
......................................................................ATTCTGGCAAACGGGGAAGTCCTTGC.................................................................................................................................................................................................................................................................................................................................................................2630.331000001
....................................................................................................................AGAACTTTTGGTTTA-CCCAGATACAGTA................................................................................................................................................................................................................................................................................................................2830.331001000
.......................................................ATAAATTAA-AG---ATTCTGGCA..................................................................................................................................................................................................................................................................................................................................................................................2030.331100000
...........................................................ATTAA-AG---ATTCTGGCAAA................................................................................................................................................................................................................................................................................................................................................................................1830.331100000
.....................................................GCATAAATTAA-AG---ATTCTGGCAAA................................................................................................................................................................................................................................................................................................................................................................................2430.331010000
....................................................CGCATAAATTAA-AG---ATTCTGGCAAA................................................................................................................................................................................................................................................................................................................................................................................2530.331010000
.............................................................TAA-AG---ATTCTGGCAAACGG.............................................................................................................................................................................................................................................................................................................................................................................1930.331000001
............................................................TTAA-AG---ATTCTGGCAAACGG.............................................................................................................................................................................................................................................................................................................................................................................2030.331100000
................................................................................................AATTTAGTTA---TTTTGC-AGAACC.......................................................................................................................................................................................................................................................................................................................................2230.331100000
..........................................................................................................................TTTGGTTTA-CCCAGATACAGTAT...............................................................................................................................................................................................................................................................................................................2330.331001000
.........................................................................CTGGCAAACGGGGAAGTCCTTGC.................................................................................................................................................................................................................................................................................................................................................................2330.331001000
...................................................................................................TTAGTTA---TTTTGC-AGAACT.......................................................................................................................................................................................................................................................................................................................................1930.331100000
..................................................AACGCATAAATTAA-AG---ATTCTGGCAAA................................................................................................................................................................................................................................................................................................................................................................................2730.331010000
...................................................ACGCATAAATTAA-AG---ATTCTGGCAAACG..............................................................................................................................................................................................................................................................................................................................................................................2830.331010000
....................................................CGCATAAATTAA-AG---ATTCTGGCAAACG..............................................................................................................................................................................................................................................................................................................................................................................2730.331010000
droAna3
AGCC-CTGGCCCT-CCATTT-TATTA-TTTTTTGCTC-----TGTTGGGCAGCGCACACATAAA--G---ATTCAGGCAATCGGGGAAGTCG-TGCACTGAAGCCA---GCTTGC-AGGACTTTTGGTTTGTTCCTGAGACAGCCTAGCTTAAGCTTAAATAT--A---T--------------------------------------------------------------------------------------------------------------------------------------------------------GCTAGACCTCAA-T----TG-----------ATGTAACT---AACC--CAT----GTTCCC--TAAT---------TTAGCATTGCTTGGCCGTTTTCAAGCCGAAAGATGAGGAACCCTACGGCAGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................................................................................................TTTGGTTTGTTCCTGAGACAGCC................................................................................................................................................................................................................................................................................................................23112.0012290001
..............................................................................................................................GTTTGTTCCTGAGACAGCC................................................................................................................................................................................................................................................................................................................1917.007020005
.....................................................GCACACATAAA--G---ATTCAGGCAATC...............................................................................................................................................................................................................................................................................................................................................................................2416.006010104
......................................................................................................................GACTTTTGGTTTGTTCCTGAGACAGCC................................................................................................................................................................................................................................................................................................................2716.006330000
.....................................................GCACACATAAA--G---ATTCAGGCAATCGG.............................................................................................................................................................................................................................................................................................................................................................................2615.005410000
.......................................................................................................................ACTTTTGGTTTGTTCCTGAGACAGCC................................................................................................................................................................................................................................................................................................................2614.004100003
....................................................CGCACACATAAA--G---ATTCAGGCAATC...............................................................................................................................................................................................................................................................................................................................................................................2514.004130000
.........................................................................................................................TTTTGGTTTGTTCCTGAGACAGCC................................................................................................................................................................................................................................................................................................................2413.003020001
..............................................................................................................................GTTTGTTCCTGAGACAGCCT...............................................................................................................................................................................................................................................................................................................2012.002020000
...........................................................................................................................TTGGTTTGTTCCTGAGACAGCC................................................................................................................................................................................................................................................................................................................2212.002000002
.....................................................GCACACATAAA--G---ATTCAGGCAAT................................................................................................................................................................................................................................................................................................................................................................................2312.002200000
.......................................................................................AGTCG-TGCACTGAAGCCA---GCTTGC-AG...........................................................................................................................................................................................................................................................................................................................................2612.002000002
........................................................................................GTCG-TGCACTGAAGCCA---GCT.................................................................................................................................................................................................................................................................................................................................................2012.002100001
.....................................................GCACACATAAA--G---ATTCAGGCAATCGGG............................................................................................................................................................................................................................................................................................................................................................................2711.001010000
................................................................................................ACTGAAGCCA---GCTTGC-AGGAC........................................................................................................................................................................................................................................................................................................................................2111.001010000
.....................................................................................................................GGACTTTTGGTTTGTTCCTGAGACAGCC................................................................................................................................................................................................................................................................................................................2811.001010000
.....................................................GCACACATAAA--G---ATTCAGGCAA.................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
...........................................................................GGCAATCGGGGAAGTCG-TGCAC...............................................................................................................................................................................................................................................................................................................................................................2211.001000001
.......................................................ACACATAAA--G---ATTCAGGCAATC...............................................................................................................................................................................................................................................................................................................................................................................2211.001000001
.......................................................................TTCAGGCAATCGGGGAAGTCG-TGC.................................................................................................................................................................................................................................................................................................................................................................2411.001000001
............................................................................................................................TGGTTTGTTCCTGAGACAGCC................................................................................................................................................................................................................................................................................................................2111.001100000
..................................................AGCGCACACATAAA--G---ATTCAGGCAATC...............................................................................................................................................................................................................................................................................................................................................................................2711.001000001
......................................................................................AAGTCG-TGCACTGAAGCCA---GCTTGC-AG...........................................................................................................................................................................................................................................................................................................................................2711.001100000
....................................................CGCACACATAAA--G---ATTCAGGCAAT................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGAAAGATGAGGAACCCT.......2111.001000001
...................................................................................................GAAGCCA---GCTTGC-AGGACC.......................................................................................................................................................................................................................................................................................................................................1911.001010000
...........................................................................................................................TTGGTTTGTTCCTGAGACAGC.................................................................................................................................................................................................................................................................................................................2111.001000001
.....................................................................................GAAGTCG-TGCACTGAAGCCA---GCTTGC-A............................................................................................................................................................................................................................................................................................................................................2711.001000001
.................................................................................CGGGGAAGTCG-TGCACTG.............................................................................................................................................................................................................................................................................................................................................................1811.001000001
...........................................................ATAAA--G---ATTCAGGCAATCGGG............................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.......................................................................................AGTCG-TGCACTGAAGCCA---GCTTGC-A............................................................................................................................................................................................................................................................................................................................................2511.001100000
......................................................................ATTCAGGCAATCGGGGAAGTCG-TG..................................................................................................................................................................................................................................................................................................................................................................2411.001100000
.............................................................................................................................GGTTTGTTCCTGAGACAGCC................................................................................................................................................................................................................................................................................................................2011.001000001
........................................................................................................................................GAGACAGCCTAGCTTAAA.......................................................................................................................................................................................................................................................................................................1811.001000001
...............................................................................................................................TTTGTTCCTGAGACAGCC................................................................................................................................................................................................................................................................................................................1811.001000001
.............................................................................................................................GGTTTGTTCCTGAGACAGT.................................................................................................................................................................................................................................................................................................................1911.001000001
...................................................................................................GAAGCCA---GCTTGC-AGGACT.......................................................................................................................................................................................................................................................................................................................................1911.001010000
droBip1
C-------------------------------------------TTGAGCAGCGCATACATTAA-AG---ATTCAGGCAATAGGGGAAGTCG-TGCACTAAAGATA---GCTTGC-AGGATTTTTGGTTTGTTCCTGGAACAGTTAATC-T-T----AAATAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCCTTATTTGA---------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
GCTT-TT-------------------------TTTTT-----TACTAATCCGCGCATATA--AT-AT--ACCTCAGGCAATCGGGGAAGTTT-TGCAATTAAGTCA--ACTTTGC-AGGACTTTTGGTTTGCACCTGAAACAGTCTAGC-A-G---------T--A---TTGTAGAGGG-----TTCTG------------------------------------------------------------CCGTTCTCG---------------------------------------GA--------------------------AAAGGCACC--AAAA---TAACG------AT---ACATT--TA---------CTTT----CCTT---------CTAGCACTGCCTAGCTGTGTTTAAGCCCAAGGACGAGGAGCCCTACGGCAGSizeHit CountTotal NormTotal
No Reads
droFic1
AGAT-TGT----------------------------------AATTGATCTGCGCACATATAAA-TATCATATCAGGAAATCGGGGAAGTTC-TGCAGTTATTTTG--TT-TTGCGAGAACTTTTGGTTTGTTCCTGAAACAGTCAAC--TACGCTTGAAATT--A---TTTTTGGGTT------TTAC------------------------------------------------------------C----------------------------------------------------------------------A----AGATGCAAT-T----TG-----------ATGTGAATTTA--------T----TTTT----CCCC---------TTAGCAATGTCTGGCTGTTTTTAAGCCAAAGGATGAGGAGCCCTATGGCAGSizeHit CountTotal NormTotal
No Reads
droEle1
AAT----------------------------------------------ACGCGCAAAGATAAA-CA---TGTCAGGAAATCGGGGAAGCCC-TGCAATTATGCTG--TTTTTGC-TGAGCTTTTGGTTTA-TCCTGAAACAGTCTAT--TATGCTTAAA--------------------------------------------------------------------------------------------------------------------------------------ATGGTCAATCGGTTC------------CACAAGATCCAAC--A---AT-----------AAGTAATTATA--------T----CTCT----CCGT---------TTAGCAATGCCTTGCTGTCTTCAAGCCAAAGGATGAGGAACCCTATGGCAGSizeHit CountTotal NormTotal
No Reads
droRho1
A---------------------------------------------------------GATAAA-TA---TATCAGGAAATCGGGGAAGTTT-TGCAATTATGATG--TTTTTGC-AGATCTTTTGGGTTA-TCCTGCAACAGTCCATT-T--------------A---TTGTGATAAA------A------------------------------------------------------------------------------------------------------------ATGGTAAATCGGTTC------------CATAAGTTTTAAT--A---AT-----------------AAAT---------T----TTCT----CCGT---------TTAGCAATGTCTTGCTGTTTTCAAGCCAAAGGATGAGGAACCCTATGGCAGSizeHit CountTotal NormTotal
No Reads
droBia1
AAT----------------------------------------------CCGCGCATAGACAAA-CA---AATCAGGAAATCGGGGAAGTCC-TGCAATTATGTTG--TTTTTGC-AGAACTTTTGGTTTA-TCCTGGGACATTATT---TACGCCTTTA---ATA-----------------------------------------------------------------------------------------------------------------------------------GTTA--------AGGCCTTCACAA----AGATAGCATT-----TT-----------AAATGGATTA---------T----TTCT----CTCT---------CAAGGAATGTCTGGCTGTATTCAAGCCCAAGGATGAGGAACCCTATGGCAGSizeHit CountTotal NormTotal
No Reads
droTak1
AAT----------------------------------------------TTGCGCAAAGATAAA-TA---AATCAGGAATTCGGGGAAGTTC-TACAATTATGTTG--TTTTTGC-AGAACTTTTGGTTTATCCCTGAAACAGTCTAAC-T-A---------C--A---ATGTTTTATA------TCA----------------------------------------------------------------TTTACG-------TATTA---------------------------------------------------TGCTGGATT----------------------TAAGTAATT---TTT----------TCCT----TTCT---------TAAGCAATGCCTGGCTGTGTTCAAGCCTAAGGATGAGGAACCCTATGGCAGSizeHit CountTotal NormTotal
No Reads
droEug1
---------------------------------------------------GCGCAAAGATCAA-TT---AATCGGGAAATCGGGGAAGTCC-TGCAATCATGTTG--CCTTTGC-GGAACTTTTGGTTTATCTCTGAAACACTTTTAT-TAA---------T--C---TTGGAT-AGC------TTA------------------------------------------------------------------------------------------------------------------TCGATTA------------TATAAGACCCAAT-T----TC-----------TAGACATT---TACT----T----GTTT----TTCC---------TAAGCACTGTCTGGCTGTATTCAAGCCCAAGGATGAGGAACCCTATGGCAGSizeHit CountTotal NormTotal
No Reads
dm3
---------------------------------------------------GCGCATAGATAAA-TA--AGATCGGGTAATCGGGGAAGTAC-TGCAAATATAAGG--CTTTTGC-AAAACTTTTGGTTTTTTCCTGAAACAGTTTCAA-A-A---------T--A---GTGAATTGTATATTGTTTAC------------------------------------------------------------CCGCTTATGCTCTATGTATTTAT------------------------------------------------------------------TA---TGCCA-----------TT---TCTTATGAT----GCTC----CCCC---------TTAGCAATGCCTGGCCGTATTTAAGCCAAAGGACGAGGAACCCTATGGCAGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................................................CGCATAGATAAA-TA--AGATCGGGTAAT................................................................................................................................................................................................................................................................................................................................................................................26126.002600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000111001301300000000000000000000000000000000000000000000000000000000000000000001000000100000000000001000000000000
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........................................................................................................................CTTTTGGTTTTTTCCTGAAACAGTT................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002
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...........................................................................GGTAATCGGGGAAGTAC-T...................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
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...........................................................ATAAA-TA--AGATCGGGTAATCGGG............................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.....................................................GCATAGATAAA-TA--AGATCGGGTAA.................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000
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.............................................................AAA-TA--AGATCGGGTAATCGGG............................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
...........................................................................................................................TTGGTTTTTTCCTGAAACAGTT................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.....................................................GCATAGATAAA-TA--AGATCGGGTAATC...............................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.....................................................GCATAGATAAA-TA--AGATCGGGT...................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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........................................................................TCGGGTAATCGGGGAAGT.......................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................C---------TTAGCAATGCCTGGCCGTAT...............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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...............................................................................................................................................................................................................................................................................................................................................................................................................................TATTTAAGCCAAAGGACGAGGAACCC........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................TCGGGTAATCGGGGAAGTAC-TGCA................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................ATCGGGGAAGTAC-TGCAA...............................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................ATCGGGTAATCGGGGAAGTAC-TGC.................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGACGAGGAACCCTATG....2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................G--CTTTTGC-AAAACTTTTGGT.................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGGACGAGGAACCCTAT.....2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTAAGCCAAAGGACGAGGAACC.........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCGTATTTAAGCCAAAGGACGAG..............2611.0010000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................TGGTTTTTTCCTGAAACAGTT................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................GATAAA-TA--AGATCGGGTA..................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..................................................................A--AGATCGGGTAATCGGGGAAGTAC-TGC.................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTAAGCCAAAGGACGAGGAACCCATC.....3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................AGATAAA-TA--AGATCGGGTA..................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.....................................................................................GAAGTAC-TGCAAATATAAGG--.....................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................GCGCATAGATAAA-TA--AGATCGGGT...................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................CGGGTAATCGGGGAAGTAC-T...................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................ATAGATAAA-TA--AGATCGGGT...................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTAAGCCAAAGGACGAGGAACC.........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................A-TA--AGATCGGGTAATCGGG............................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGGACGAGGAACCCTATGGC..2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................CGGGTAATCGGGGAAGTA......................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................AGATCGGGTAATCGGGG...........................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................TTTGC-AAAACTTTTGGTTTTTTCCTGAA......................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................GCATAGATAAA-TA--AGATCGGGTAATCG..............................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.......................................................ATAGATAAA-TA--AGATCGGGTAATC...............................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
..............................................................AA-TA--AGATCGGGTAATCGGG............................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
..........................................................................GGGTAATCGGGGAAGTAC-TGC.................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................TGGTTTTTTCCTGAAACAGTTT...............................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................GGTTTTTTCCTGAAACAGTT................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................AA-TA--AGATCGGGTAATCGGGGA..........................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAGCCAAAGGACGAGGA............2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...................................................GCGCATAGATAAA-TA--AGATCGGGTA..................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..........................................................................GGGTAATCGGGGAAGTAC-TG..................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................GCGCATAGATAAA-TA--AGATCGGGTAATCGG.............................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................CGCATAGATAAA-TA--AGATC.......................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................ATCGGGGAAGTAC-TGCAAATA............................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................GGTAATCGGGGAAGTAC-TGCA................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................TATTTAAGCCAAAGGACGAGGAACC.........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................CATAGATAAA-TA--AGATCGGGTAATCGG.............................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................GTAATCGGGGAAGTAC-TGC.................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
............................................................................GTAATCGGGGAAGTAC-TGCA................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGACGAGGAACCCTAT.....1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................ACTTTTGGTTTTTTCCTGAAACAGTTT...............................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................GCGCATAGATAAA-TA--AGATCGGGTAATC...............................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...........................................................................GGTAATCGGGGAAGTAC-TGCAA...............................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................GGGTAATCGGGGAAGTAC-T...................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAGCCAAAGGACGAGGAACCCTATG....2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................GATAAA-TA--AGATCGGGTAATCGGATC..........................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................TCGGGTAATCGGGGAAGTA......................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................CGCATAGATAAA-TA--AGATCGGGTAAG................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................ATAAA-TA--AGATCGGGTAATCGGGG...........................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTAAGCCAAAGGACGAGGAACATC.......2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................CGCATAGATAAA-TA--AGAT........................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.............................................................................TAATCGGGGAAGTAC-TGCAAATATAAG........................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAAGGACGAGGAAC..........1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................GGGGAAGTAC-TGCAAATA............................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................CGCATAGATAAA-TA--AGATCGGGTGG.................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
C--------------------------------------------------GCGCATAGATAAA-TA--AGATCAGGTAATCGGGGAAGTAC-TGCAAGTATAAGG--CTTTTGC-AAAACTTTTGGTTTTTTCCTGAAACAATTTCAA-A-A---------T--A---TTGTAGTGGA------TTAC------------------------------------------------------------CCGCTTATGCTTTACGTATTATT------------------------------------------------------------------TA---TGACA-----------TT---TCTTA---T----GCTT----TCCC---------CCAGCAATGCCTGGCCGTATTTAAGCCAAAGGACGAGGAACCCTATGGCAGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................AACTTTTGGTTTTTTCCTGAAACAATT................................................................................................................................................................................................................................................................................................................2715.00500050000000000000
..........................................................................................................................TTTGGTTTTTTCCTGAAACAATT................................................................................................................................................................................................................................................................................................................2312.00200020000000000000
....................................................CGCATAGATAAA-TA--AGATCAGGTAATCG..............................................................................................................................................................................................................................................................................................................................................................................2812.00201000100000000000
.......................................................................................................................ACTTTTGGTTTTTTCCTGAAACAATT................................................................................................................................................................................................................................................................................................................2612.00210010000000000000
...............................................................................ATCGGGGAAGTAC-TGCAAGTAT...........................................................................................................................................................................................................................................................................................................................................................2211.00100000000000000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AGGACGAGGAACCCTATGGC..2011.00100000010000000000
...................................................GCGCATAGATAAA-TA--AGATCAGGTA..................................................................................................................................................................................................................................................................................................................................................................................2511.00110000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................TATTTAAGCCAAAGGACGAGGAACCC........2611.00101000000000000000
..................................................................................GGGGAAGTAC-TGCAAGTATAA.........................................................................................................................................................................................................................................................................................................................................................2111.00100001000000000000
........................................................................................................................CTTTTGGTTTTTTCCTGAAACAATT................................................................................................................................................................................................................................................................................................................2511.00101000000000000000
....................................................................................................................AAAACTTTTGGTTTTTTCCTGAAACAATT................................................................................................................................................................................................................................................................................................................2911.00100010000000000000
.....................................................................................GAAGTAC-TGCAAGTATAAGG--.....................................................................................................................................................................................................................................................................................................................................................2011.00100010000000000000
............................................................TAAA-TA--AGATCAGGTAATCGGGGA..........................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCAAAGGACGAGGAACCC........2011.00100000001000000000
...............................................................A-TA--AGATCAGGTAATCGGG............................................................................................................................................................................................................................................................................................................................................................................1911.00100010000000000000
C--------------------------------------------------GCGCATAGATAAA-TA--AGATCAG.....................................................................................................................................................................................................................................................................................................................................................................................2311.00110000000000000000
.........................................................................................................................TTTTGGTTTTTTCCTGAAACAATT................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
....................................................CGCATAGATAAA-TA--AGATCAGGTA..................................................................................................................................................................................................................................................................................................................................................................................2411.00110000000000000000
....................................................CGCATAGATAAA-TA--AGATCAGGTAATC...............................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000000000
.................................................................................CGGGGAAGTAC-TGCAAGTATA..........................................................................................................................................................................................................................................................................................................................................................2111.00100000001000000000
...............................................................................................................................TTTTTTCCTGAAACAATT................................................................................................................................................................................................................................................................................................................1811.00100000000001000000
.......................................................................ATCAGGTAATCGGGGAA.........................................................................................................................................................................................................................................................................................................................................................................1720.50100000001000000000
droSec2
---------------------------------------------------GCGCATAGATAAA-TA--AGATCAGGTAATCGGGGAAGTAC-TGCAACTATAAGG--CTTTTGC-AAAACTTTTGGTTTTTTCCTGAAACAATTTCAA-A-A---------T--A---TTGTAGTGGA------TTAC------------------------------------------------------------CCG-------------TATTATT------------------------------------------------------------------TA---TGACA-----------TT---TCTTA---T----GCTT----TCCC---------CCAGCAATGCCTGGCCGTATTTAAGCCAAAGGACGAGGAACCCTAT-GCAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................................................AA-TA--AGATCAGGTAATCGGGGAA.........................................................................................................................................................................................................................................................................................................................................................................2311.0011000
......................................................................GATCAGGTAATCGGGGAAGTAC-....................................................................................................................................................................................................................................................................................................................................................................2211.0010010
.........................................................................CAGGTAATCGGGGAAGTAC-TGC.................................................................................................................................................................................................................................................................................................................................................................2211.0010010
...............................................................................................................................................TTTCAA-A-A---------T--A---TTGTAGTGGA------TTAC------------------------------------------------------------CCG-------------........................................................................................................................................................................................2711.0010001
......................................................................GATCAGGTAATCGGGGAAGTAC-TGC.................................................................................................................................................................................................................................................................................................................................................................2511.0010010
...................................................GCGCATAGATAAA-TA--AGATCAGGTAA.................................................................................................................................................................................................................................................................................................................................................................................2611.0010001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGACGAGGAACCCTAT-GGCA2311.0010100
droYak3
---------------------------------------------------GCGCATAGATAAA-TA---AATCAGTTAATAGGGGAAGTTC-TGCAACTATAAG---CCTTTGC-AAAACTTTTGGTTTTTTTCTGAAACAGTAGAAA-A-A---------T--A---TTTTAGAAGA------ATAC------------------------------------------------------------CCGGTTATACTTTATATACTATT------------------------------------------------------------------TA---TTCCAATT-TAATCGATT---TCTTA---T----GTTT----TTCC---------TCAGCAATGTCTGGCTGTATTTAAGCCAAAGGACGAGGAGCCCTATGGTAGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................................................................TA---AATCAGTTAATAGGGGAAGTTC-TGC.................................................................................................................................................................................................................................................................................................................................................................2712.00200100010000
......................................................................................................................AACTTTTGGTTTTTTTCTGAAACAGTA................................................................................................................................................................................................................................................................................................................2712.00202000000000
..........................................................................AGTTAATAGGGGAAGTTC-TGC.................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
.......................................................................ATCAGTTAATAGGGGAAGTTC-....................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
......................................................................AATCAGTTAATAGGGGAAGTTC-TGC.................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
.............................................................AAA-TA---AATCAGTTAATAGGGGAA.........................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
............................................................TAAA-TA---AATCAGTTAATAGGGGAA.........................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
..................................................................A---AATCAGTTAATAGGGGAAGTTC-TGC.................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
...........................................................................GTTAATAGGGGAAGTTC-TGC.................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
..............................................................AA-TA---AATCAGTTAATAGGGGAAGTTC-TGC.................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000
droEre2
---------------------------------------------------GCGCATATATAAA-TA---AATCAGGTAATAGGGGAAGTGC-TGCAACTATAAGG--CTTTTGC-AAAACTTTTGGTTTTTTCCTGAAACAGTATAAA-A-A---------T--A---TTGTAATAGA------TGGC------------------------------------------------------------CGGGTTATACTAAATATATTATT------------------------------------------------------------------TT---TGTAATTT-TGAGTGATT---TCTT----T----GTAT----CCCC---------TCAGCAATGTCTGGCTGTATTTAAGCCGAAGGACGAGGAGCCCTATGGCAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........................................................................................................................TTTTGGTTTTTTCCTGAAACAGTT................................................................................................................................................................................................................................................................................................................2415.0050000005
.......................................................................................................................................................................................................................................................................................................................................................................................................................TCTGGCTGTATTTAAGCCGAAGGACGAG..............2811.0011000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTAAGCCGAAGGACGAGGA............2311.0010000100
......................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAAGGACGAGGAGCCCTATGG...2411.0010001000
......................................................................AATCAGGTAATAGGGGAAGTGC-TGC.................................................................................................................................................................................................................................................................................................................................................................2511.0010100000
.......................................................................ATCAGGTAATAGGGGAAGTGC-....................................................................................................................................................................................................................................................................................................................................................................2111.0010001000
..............................................................................................................................................................................................................................................................................TT------------------------------------------------------------------TT---TGTAATTT-TGAGTGAT.........................................................................................2011.0010000100
...................................................GCGCATATATAAA-TA---AATCAGGTA..................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
...................................................................................................................................................................................................................................................................................................................................................................................................CC---------TCAGCAATGTCTGGCTGT.................................2011.0011000000
................................................................................TAGGGGAAGTGC-TGCAACTAT...........................................................................................................................................................................................................................................................................................................................................................2111.0010000100
...............................................................A-TA---AATCAGGTAATAGGGGAAGTGC-TGC.................................................................................................................................................................................................................................................................................................................................................................2811.0010100000
.......................................................................ATCAGGTAATAGGGGAAGT.......................................................................................................................................................................................................................................................................................................................................................................1911.0010001000

Generated: 05/18/2015 at 01:32 AM