ID:

dmo_1899

 Coordinate:

scaffold_6540:10767675-10767825 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-27.2 -27.0 -26.9

Flybase annnotation

CDS [Dmoj\GI23204-cds]; exon [dmoj_GLEANR_8355:2]; intron [Dmoj\GI23204-in]

Repeatable elements

NameClassFamilyStrand
Homo6DNAhAT-Pegasus-
mature
  1. scaffold_4183:4251-4274 +
  2. scaffold_6438:39-62 +
  3. scaffold_6458:491-514 +
  4. scaffold_6482:1633265-1633288 +
  5. scaffold_6482:1748581-1748604 +
  6. scaffold_6496:24008417-24008440 +
  7. scaffold_6496:25691299-25691322 +
  8. scaffold_6496:26818208-26818231 +
  9. scaffold_6498:371980-372003 +
  10. scaffold_6498:691285-691308 +
  11. scaffold_6498:3289930-3289953 +
  12. scaffold_6500:14563243-14563266 +
  13. scaffold_6500:27881285-27881308 +
  14. scaffold_6500:29314944-29314967 +
  15. scaffold_6500:30233156-30233179 +
  16. scaffold_6500:30830599-30830622 +
  17. scaffold_6500:32217345-32217368 +
  18. scaffold_6540:754244-754267 +
  19. scaffold_6540:2254825-2254848 +
  20. scaffold_6680:24278541-24278564 +
  21. scaffold_6331:39212-39235 +
  22. scaffold_6331:44152-44175 +
  23. scaffold_6331:45826-45849 +
  24. scaffold_6359:996413-996436 +
  25. scaffold_6359:4277547-4277570 +
  26. scaffold_6496:23899136-23899159 +
  27. scaffold_6498:417606-417629 +
  28. scaffold_6500:11845604-11845627 +
  29. scaffold_6500:15579005-15579028 +
  30. scaffold_6500:22313157-22313180 +
  31. scaffold_6500:23745920-23745943 +
  32. scaffold_6500:23984098-23984121 +
  33. scaffold_6500:28676505-28676528 +
  34. scaffold_6500:30641087-30641110 +
  35. scaffold_6540:12402909-12402932 +
  36. scaffold_6540:17622224-17622247 +
  37. scaffold_6540:30928378-30928401 +
  38. scaffold_6654:2024210-2024233 +
  39. scaffold_6680:19904049-19904072 +
  40. scaffold_6680:21130825-21130848 +
  41. scaffold_2227:1443-1466 -
  42. scaffold_4719:2721-2744 -
  43. scaffold_6308:2381743-2381766 -
  44. scaffold_6473:8404794-8404817 -
  45. scaffold_6473:11165602-11165625 -
  46. scaffold_6491:346433-346456 -
  47. scaffold_6496:24190923-24190946 -
  48. scaffold_6496:26028279-26028302 -
  49. scaffold_6500:7656444-7656467 -
  50. scaffold_6500:9973338-9973361 -
  51. scaffold_6500:17361785-17361808 -
  52. scaffold_6500:25194140-25194163 -
  53. scaffold_6500:25594921-25594944 -
  54. scaffold_6500:30983926-30983949 -
  55. dmo_1899  scaffold_6540:10767768-10767791 -
  56. dmo_1951  scaffold_6540:15371469-15371492 -
  57. scaffold_6540:23945386-23945409 -
  58. scaffold_6541:319337-319360 -
  59. scaffold_6680:19729655-19729678 -
  60. scaffold_6680:22241202-22241225 -
  61. scaffold_6473:10353964-10353987 +
star

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GCATGTGTATGTATGTGTGCATAAAAATGCAGAATGATTAGAATATCAGCTTAGAGGGTTCAGGGTATCTCCTAGTCGAGCAGTCTCGACTAGAGCCTTCTTACTTGTTTGTTTTTAGTTTCTTTATTTCTCTTTTTGACTTTTGCTTTCTGTCTCATTCATATATTAATGCAGCCTCACTTTGGCAATGTTTTCTTTCAGCCCTGCTGGCGGCCACCTTGCGGACGTACCAGCGTGCCGGATGCGATTCA
**************************************************..(((((((((.(((....)))((((((((....)))))))))))))))))....................................(((..(((((...((.((((((........)))).))...))....))))).))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M060
embryo
 M046
female body
 V110
male body
....................................................................................CTCGACTAGAGCCTTCTTACTTGT............................................................................................................................................... 24 0 20 0.25 5 5 0 0
...................................................................TCTCCTAGTCGAGCAGTCTCGACTAG.............................................................................................................................................................. 26 0 20 0.10 2 0 2 0
.....................................................................................TCGACTAGAGCCTTCTTACTTGTTTG............................................................................................................................................ 26 0 17 0.06 1 0 1 0
.............................................TCAGCTTAGAGGGTTCAGGGTATC...................................................................................................................................................................................... 24 0 20 0.05 1 0 1 0
...............TGTGCATAAAAATGCAGAATGATTTG.................................................................................................................................................................................................................. 26 1 20 0.05 1 0 1 0
..................................TGATTAGAATATCAGCTTAGAGGGTTC.............................................................................................................................................................................................. 27 0 20 0.05 1 0 1 0
..........GTATGTGTGCATAAAAATGCAGAAT........................................................................................................................................................................................................................ 25 0 20 0.05 1 1 0 0
...........................................TATCAGCTTAGAGGGTTCAGG........................................................................................................................................................................................... 21 0 20 0.05 1 0 0 1
...........................................................................TCGAGCAGTCTCGACTAGAGCCTTCT...................................................................................................................................................... 26 0 20 0.05 1 1 0 0

Anti-sense strand reads

CGTACACATACATACACACGTATTTTTACGTCTTACTAATCTTATAGTCGAATCTCCCAAGTCCCATAGAGGATCAGCTCGTCAGAGCTGATCTCGGAAGAATGAACAAACAAAAATCAAAGAAATAAAGAGAAAAACTGAAAACGAAAGACAGAGTAAGTATATAATTACGTCGGAGTGAAACCGTTACAAAAGAAAGTCGGGACGACCGCCGGTGGAACGCCTGCATGGTCGCACGGCCTACGCTAAGT
**************************************************..(((((((((.(((....)))((((((((....)))))))))))))))))....................................(((..(((((...((.((((((........)))).))...))....))))).))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body		 V041
embryo
 V056
head
...................................................................................................................................................AAGACAGAGTAGGTATATA..................................................................................... 19 1 2 0.50 1 1 0 0 0 0
.......................TTTTACGTCTTACTAATCTTATAGT........................................................................................................................................................................................................... 25 0 20 0.45 9 9 0 0 0 0
........................TTTACGTCTTACTAATCTTATAGT........................................................................................................................................................................................................... 24 0 20 0.25 5 0 4 0 1 0
.....................................................................................................................................................................................................................GTTGGAACGCCAGCATGA.................... 18 3 20 0.10 2 2 0 0 0 0
.....................................................................................AGCTGATCTCGGAAGAATGAAC................................................................................................................................................ 22 0 20 0.10 2 2 0 0 0 0
.....................ATTTTTACGTCTTACTAATCTTATAG............................................................................................................................................................................................................ 26 0 20 0.10 2 2 0 0 0 0
.........................................................................TCAGCTCGTCAGAGCTGATCT............................................................................................................................................................. 21 0 20 0.10 2 0 2 0 0 0
........................TTTACGTCTTACTAATCTTATAG............................................................................................................................................................................................................ 23 0 20 0.10 2 2 0 0 0 0
.................................................................................................................................................AGAAGACAGAGTAGGTATATA..................................................................................... 21 3 13 0.08 1 0 0 1 0 0
........................................................................................TGATCTCGGAAGAATGAACAAAC............................................................................................................................................ 23 0 19 0.05 1 1 0 0 0 0
........................................CTTATAGTCGAATCTCCCAAGTCCCAT........................................................................................................................................................................................ 27 0 20 0.05 1 1 0 0 0 0
................CACGTATTTTTACGTCTTACTAATCTTA............................................................................................................................................................................................................... 28 0 20 0.05 1 1 0 0 0 0
................................................CGAATCTCCCAAGTCCCAT........................................................................................................................................................................................ 19 0 20 0.05 1 0 1 0 0 0
..............................TCTTACTAATCTTATAGTCGAATCT.................................................................................................................................................................................................... 25 0 20 0.05 1 0 1 0 0 0
............................................................................GCTCGTCAGAGCTGATCTCGG.......................................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 1
..........................................................................CAGCTCGTCAGAGCTGATCTCG........................................................................................................................................................... 22 0 20 0.05 1 1 0 0 0 0
...............................CTTACTAATCTTATAGTCGAATC..................................................................................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0
........................................................CCAAGTCCCATAGAGGATCAGCTC........................................................................................................................................................................... 24 0 20 0.05 1 0 1 0 0 0
...........................................................................AGCTCGTCAGAGCTGATCTCGGAA........................................................................................................................................................ 24 0 20 0.05 1 1 0 0 0 0
...................................................................AGAGGATCAGCTCGTCAGAGCTG................................................................................................................................................................. 23 0 20 0.05 1 1 0 0 0 0
.......ATACATACACACGTATTTTTAC.............................................................................................................................................................................................................................. 22 0 20 0.05 1 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6540:10767625-10767875 - dmo_1899 GCAT-GTGTATGTATGT-GTGCATAAA----AATGCAGAATGATTAGAATATCAG-----CTTAGAGGGTTCAGGGTATCTCCTAGTCGAGCAGTCTCGACTAGAGCCTTCTTACTTGTTTG-------------------T----------------------------------T-----------------TTTAGTTTCTTT-ATT-------TCTCTTTTT----------GACTTTT-------------------GCTTTCTGTCTCAT---T--CATATATTAATGC--AG-------------------------------------------------------------------------------------------------------------------------------------------CCTCACTTTGGCAATGTTTTCTTTCAGCCC------------------TGCTGGCGGCCACCTTGCGGACGTACCAGCGTGCCGGATGCGATTCA
droVir3 scaffold_13047:13525808-13525960 - TTGC-CTGTTTGCAT----------------------------------------------------------------TTGATATGC-------------------------------------------------------------------------------------------------------------------GTT-ATATA------TTTTTTGT----------TACTTTC-------------------GCTTTGTGCTTCAT---T--TATATATTAATGC--AG-------------------------------------------------------------------------------------------------------------------------------------------CCCGATTTCGGCGTTGTTTGCTTTTAGCTC------------------TCCTAGCGGCCACCTTGCGGACGTACCAGCGTGCCGGATGCGATTCA
droGri2 scaffold_14906:10136697-10136877 - TGCA-GAATATATTT--------------------------------A------------ACAGCTGCGTTCAGGGTAAATCGTAGTCGAGCTCACTCGACTACAGCACTCTTACTTGTTTG-------------------T----------------------------------T-----------------GTTGTTGC-CGT-ATT-------TCGCGGCGT--------------------------------------GTTATTGTTAAT---T--TAAACAGTGCTGC--TGCCG----------------------------------------------C----AC---TTTGAGGGATGAACG---------------------------------------------------------------------------------TT--CTAGCTGTCTGATTGACGGCCAGACTGC-----------------------------------------------
droWil2 scf2_1100000004943:13718029-13718244 + GGCT-TCT-------------------------------------------------------------------------TGTTGTCCACC-AACTTCGTTT--GGCTTCATATTTGCTTG-------------------C----------------------------------T----------------GTTC--------------------------------------------------------------------------------TCGTA-------------------TACAATTTTTTGAAGATTCTCTTTCATTTTTGTGTGTTTGTGGACTTTTGCTATGTCCTTCATCTATTAACGCTTCTATGTCTTT--------------------CT--------------------------------TCTTTTTGG--CCGTTTGCTTTCAGCTC------------------TTCTTGCAGCCACCTTACGAACGTACCAGCGCGCCGGATGCGATTCT
dp5 XR_group6:12605648-12605848 - GTGT-GTGTATCCAC----------------------------------------------------------------CTGATAGGCCGAG-GTGTGG----GTGC----TCCCT-GCCA-TTAGCTGTTATCCCTGTCATGTCAGGGCGCTATCCCTGTTCCTACTTAACCCACTTTGCTTTTTGCTCTTC-GTTGGTGTC----G---------------TTT----------TGTTTTT-------------------GTTTTGCTTTTCTTATTGCA-------------------CAT-------------------------------------------------------------AATTTAT----TT-------------------------------------ATTGG--------------TGTT---------TGTGAAATTTTCTTTCGG----------------GCCTG-----------------------------------------------
droPer2 scaffold_6:366994-367065 + CTTT-GTCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCTTGTTTTCAGCTC------------------TCCTGGCCGCCACCTTGAGAACGTACCAGCGCGCAGGATGCGACTCG
droAna3 scaffold_13340:23227100-23227216 + CTTT-TTTTAT------------------------------------------------------------------------TGTT-------------------TGTTGTTTGTTGTTTT-------------------T----------------------------------T-----------------TTTTTTTTT----T----TT------------------------------------------------------TTTTT-----------------------------------------------------------------------------------------------------TGTTATTATTTGTTTAACGCTTTTTTGATTTTGTTTTTT-----------------------------------------------T-TT-----------------TTTT-TGCGAGCGTCCGCCTTTTGGGC-------------------------
droBip1 scf7180000394425:5039-5187 + GTAT-GTATATGTATAT-ATGCATATG----TATATTA------------------------------------------ATGCAATT-----AAATTGATTATGAA----------------------------------------------------------------------------------------------------AT--------AAAAGTTTT----------A-------------------------------------------------------------------------------------ATCTATCTTTGTGTACTAGTTGTTTTT----AT---TCTTATTATTTAATATTGTTATGTTATCTC------TATCTTCTATTTGTTTTAC--------------------------------------------------------------------CTTCT-----------------------------------------------
droKik1 scf7180000302697:418978-419129 - CTCA-GTCA------------------------------------------------------------------------AGTT--C----AGTTCTTCCTAGAGAACACTT----GTCTC--------------AATTAT----------------------------------T-----------------TTAGTTTTGCTT-ATT-------TCTTTATTT----------TATTTTT-------------------AATTTATTTTTCTT---A--TTTATTTTA-------------------------------------------------------------------------------------------------------------------------------AT-------------------------TTAAAAATGTTTCCCTTGGTGTT------------------ATCTGGCATACATTTTG-GAATGCACC--------------------
droFic1 scf7180000453924:881243-881345 + G-------------------------------------------------------------------------GGTATCCCAACCTCAAGC-AAAAACACTGGAGCGTTCTTTCTTGTTTT-------------------T----------------------------------TTT---------------TCGCATTTATTT-ATTTA------TCTTTTTT----------TGTTTTA-------------------GCTGCTTGCTTT-----------------------------------------------------------------------------------------------------------------------------------------CT--------------------------------------------------------------------TTTTC-----------------------------------------------
droEle1 scf7180000490706:28363-28464 + GGCTTGTGCTTGCATA--------------------------------------------------------------------------------------------TTTTCTTTCTTTTT-------------------T----------------------------------T-------------------------AATT-TTTT-------TTCTTTTT----------TTTTTTT-------------------GTTTTCTTTTCTTT---T--CATTT--------------------------------------------------------------------------------------------------------------------------------AATAT--------------TCAT---------AGTAATATTCCCTTTAA---------------------G-----------------------------------------------
droRho1 scf7180000777206:23593-23799 + GCAT-ATGTATTTACATTGTACACAGTTGCAATTGCCCGGCAATTATAATATTAAGTTGTTTAGCTGAGTAACGGGTATCTAATAGTCGAGG-AACTCGACTACACCGTTCTCTCTTGTTTT-------------------T----------------------------------TG----------------GTCAGTTTCTA--C----TT---ACTTTTTGT----------AAATTTT-------------------G--------------TTGTG-------------------TA-------------------------------------------------------------AAATTAATATTTCTG----ATT------------------TCTAAACTCCA---T--------------------------TTTAAAATATT-------------------------TTCTT-----------------------------------------------
droBia1 scf7180000302126:1541963-1542093 - G-------------------------------------------------------------------------GGTATCTGACAGTCGAGG-CACTCGACTATAGCGTTCTTCCTTCTTTT-------------------T----------------------------------G-----------------TTCTGTTTACAAAAT--------TATAATCTT----------GACCTTC-------------------ATTTTTACCTG------------------------------------------------------------------------------------------------------------------------------------------TA-----ATATTATATTTATAAATTAT------ATTGACCTTGTTTTA-------------------------TT-----------------------------------------------
droTak1 scf7180000414002:7826-7962 + G-------------------------------------------------------------------------GGTATCTGATAGTCGGGG-CACCCGACTATAGCGTTCTCTCTTGTTTA-------------------A----------------------------------T-----------------GTTAGTTTTGGT-AGT-------C-----GTTGCTTTTGGTTGGGTTTT----------------------------------TAT--CATAAAAAAATCCAC-----------------------------------------------------------------------TAACT-------------------------------TTGCGATTTTT---T---------------------------------------TTTTAAAACT------------GGTTAG-----------------------------------------------
droEug1 scf7180000409181:151471-151597 - G-------------------------------------------------------------------------GGTATCTTATGGTCGCGG-CACTCGACTATAGCGTTTCCTCTTGTTTT-------------------A----------------------------------T-----------------TTGTATTTCT-------------------TTT----------TATTTTT-------------------ATATCATTTT---------------------------------------------------------------------------------AT---TTTTATAAATTAATATTTTTATATCATT-----------------------------------------------------------TT--TAATGTATAT----------------------TTTTA-----------------------------------------------
dm3 chrX:22004306-22004405 + G-------------------------------------------------------------------------GGTATCTGATAGTCGGGG-AACTCGACTATAGCATTCTTTCTTGTTAC-------------------T----------------------------------T-----------------TTTATTATTATT-ATT-------ATTAT-TAT----------TATTATT-------------------GTTATTACTTT------------------------------------------------------------------------------------------------------------------------------------------TA-----TT-------------------------------------------------------------ATTAT-----------------------------------------------
droSim2 3l:22773371-22773493 + GT---------------------------------------------------------------------------ATCTGATAATCGGGG-AACTCGACTATTGCTTTCTCTCGTGTTTC-------------------T----------------------------------A-----------------TTTATTTAATTT-ATT-------ATTATTATT----------ATTTTTT-------------------TTTTTTTTTT--------------------------------------------------------------------------------------------------------TTATCA---------------------------------ACAAT--------------TT-----------AAAGAAGTT--TTAATTG----------------ATCAA-----------------------------------------------
droSec2 scaffold_1:9535242-9535332 + GACG-GTA---------------------------------------------------------------ACGGGTATCTGATAGTCGGGG-AACTCGACTATAGCATTCTCTCTTGTTTT-------------------T----------------------------------T-----------------TTTTATAT----------------------------------A----------------------------------------------------GATTCCGC-----------------------------------------------------------------------TTTC---------------------------------TG--------------------------------------------CCGTT--------------------------TTCT-----------------------------------------------
droYak3 X:7410651-7410777 - G-------------------------------------------------------------------------GGTATCAGATAGTCGGGG-AACTCGACTATAGCGTTCTCTCTTGTTTT-------------------T----------------------------------T-----------------GTTTCTTTC----A----TTTTTG-----TTT----------AATTTGTGTGTTTATTTTTCGTTTTTAATCAGTGCTTT----CC--TTTGAATGATTCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTCA-----------------------------------------------
droEre2 scaffold_4690:12992015-12992170 - ATTT-GAACTTCCA----------------------------------------------CTAGCTGAGTAACGGGTATCTGATAGTCGGAA-AACTAG-CCATAGAATTCTATCTTGTTTT-------------------G----------------------------------T-----------------ATATCTTTT----A----TT---ATTCTGTTT----------GGATTTT-------------------GCTTTACGCCTCCT---T--CTG----------------------------------------------------------------------------------------------------------------------------GTTTTT---TT------TTT-AAACTTAGCCTGACGTTGACGAT--------------------------------G-----------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
GCAT-GTGTATGTATGT-GTGCATAAA----AATGCAGAATGATTAGAATATCAG-----CTTAGAGGGTTCAGGGTATCTCCTAGTCGAGCAGTCTCGACTAGAGCCTTCTTACTTGTTTG-------------------T----------------------------------T-----------------TTTAGTTTCTTT-ATT-------TCTCTTTTT----------GACTTTT-------------------GCTTTCTGTCTCAT---T--CATATATTAATGC--AG-------------------------------------------------------------------------------------------------------------------------------------------CCTCACTTTGGCAATGTTTTCTTTCAGCCC------------------TGCTGGCGGCCACCTTGCGGACGTACCAGCGTGCCGGATGCGATTCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...............................................................................................CTCGACTAGAGCCTTCTTACTTGT..............................................................................................................................................................................................................................................................................................................................................................................................................................24200.255000050
..............................................................................TCTCCTAGTCGAGCAGTCTCGACTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................26200.102200000
................................................................................................TCGACTAGAGCCTTCTTACTTGTTTG-------------------........................................................................................................................................................................................................................................................................................................................................................................................................26170.061100000
...................................................TCAG-----CTTAGAGGGTTCAGGGTATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051100000
........................................TGATTAGAATATCAG-----CTTAGAGGGTTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
...........GTATGT-GTGCATAAA----AATGCAGAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000010
.................................................TATCAG-----CTTAGAGGGTTCAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000001
......................................................................................TCGAGCAGTCTCGACTAGAGCCTTCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000010
droVir3
TTGC-CTGTTTGCAT----------------------------------------------------------------TTGATATGC-------------------------------------------------------------------------------------------------------------------GTT-ATATA------TTTTTTGT----------TACTTTC-------------------GCTTTGTGCTTCAT---T--TATATATTAATGC--AG-------------------------------------------------------------------------------------------------------------------------------------------CCCGATTTCGGCGTTGTTTGCTTTTAGCTC------------------TCCTAGCGGCCACCTTGCGGACGTACCAGCGTGCCGGATGCGATTCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droGri2
TGCA-GAATATATTT--------------------------------A------------ACAGCTGCGTTCAGGGTAAATCGTAGTCGAGCTCACTCGACTACAGCACTCTTACTTGTTTG-------------------T----------------------------------T-----------------GTTGTTGC-CGT-ATT-------TCGCGGCGT--------------------------------------GTTATTGTTAAT---T--TAAACAGTGCTGC--TGCCG----------------------------------------------C----AC---TTTGAGGGATGAACG---------------------------------------------------------------------------------TT--CTAGCTGTCTGATTGACGGCCAGACTGC-----------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
GGCT-TCT-------------------------------------------------------------------------TGTTGTCCACC-AACTTCGTTT--GGCTTCATATTTGCTTG-------------------C----------------------------------T----------------GTTC--------------------------------------------------------------------------------TCGTA-------------------TACAATTTTTTGAAGATTCTCTTTCATTTTTGTGTGTTTGTGGACTTTTGCTATGTCCTTCATCTATTAACGCTTCTATGTCTTT--------------------CT--------------------------------TCTTTTTGG--CCGTTTGCTTTCAGCTC------------------TTCTTGCAGCCACCTTACGAACGTACCAGCGCGCCGGATGCGATTCTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
GTGT-GTGTATCCAC----------------------------------------------------------------CTGATAGGCCGAG-GTGTGG----GTGC----TCCCT-GCCA-TTAGCTGTTATCCCTGTCATGTCAGGGCGCTATCCCTGTTCCTACTTAACCCACTTTGCTTTTTGCTCTTC-GTTGGTGTC----G---------------TTT----------TGTTTTT-------------------GTTTTGCTTTTCTTATTGCA-------------------CAT-------------------------------------------------------------AATTTAT----TT-------------------------------------ATTGG--------------TGTT---------TGTGAAATTTTCTTTCGG----------------GCCTG-----------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
CTTT-GTCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCTTGTTTTCAGCTC------------------TCCTGGCCGCCACCTTGAGAACGTACCAGCGCGCAGGATGCGACTCGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
CTTT-TTTTAT------------------------------------------------------------------------TGTT-------------------TGTTGTTTGTTGTTTT-------------------T----------------------------------T-----------------TTTTTTTTT----T----TT------------------------------------------------------TTTTT-----------------------------------------------------------------------------------------------------TGTTATTATTTGTTTAACGCTTTTTTGATTTTGTTTTTT-----------------------------------------------T-TT-----------------TTTT-TGCGAGCGTCCGCCTTTTGGGC-------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................................................................................................................TTTT-------------------T----------------------------------T-----------------TTTTTTTTT----T----TT------------------------------------------------------TTTTT-----------------------------------------------------------------------------------------------------...............................................................................................................................................................23200.051100000
.........................................................................................................................T-------------------T----------------------------------T-----------------TTTTTTTTT----T----TT------------------------------------------------------TTTTT-----------------------------------------------------------------------------------------------------...............................................................................................................................................................20200.051000001
droBip1
GTAT-GTATATGTATAT-ATGCATATG----TATATTA------------------------------------------ATGCAATT-----AAATTGATTATGAA----------------------------------------------------------------------------------------------------AT--------AAAAGTTTT----------A-------------------------------------------------------------------------------------ATCTATCTTTGTGTACTAGTTGTTTTT----AT---TCTTATTATTTAATATTGTTATGTTATCTC------TATCTTCTATTTGTTTTAC--------------------------------------------------------------------CTTCT-----------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
CTCA-GTCA------------------------------------------------------------------------AGTT--C----AGTTCTTCCTAGAGAACACTT----GTCTC--------------AATTAT----------------------------------T-----------------TTAGTTTTGCTT-ATT-------TCTTTATTT----------TATTTTT-------------------AATTTATTTTTCTT---A--TTTATTTTA-------------------------------------------------------------------------------------------------------------------------------AT-------------------------TTAAAAATGTTTCCCTTGGTGTT------------------ATCTGGCATACATTTTG-GAATGCACC--------------------SizeHit CountTotal NormTotal
No Reads
droFic1
G-------------------------------------------------------------------------GGTATCCCAACCTCAAGC-AAAAACACTGGAGCGTTCTTTCTTGTTTT-------------------T----------------------------------TTT---------------TCGCATTTATTT-ATTTA------TCTTTTTT----------TGTTTTA-------------------GCTGCTTGCTTT-----------------------------------------------------------------------------------------------------------------------------------------CT--------------------------------------------------------------------TTTTC-----------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
GGCTTGTGCTTGCATA--------------------------------------------------------------------------------------------TTTTCTTTCTTTTT-------------------T----------------------------------T-------------------------AATT-TTTT-------TTCTTTTT----------TTTTTTT-------------------GTTTTCTTTTCTTT---T--CATTT--------------------------------------------------------------------------------------------------------------------------------AATAT--------------TCAT---------AGTAATATTCCCTTTAA---------------------G-----------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
GCAT-ATGTATTTACATTGTACACAGTTGCAATTGCCCGGCAATTATAATATTAAGTTGTTTAGCTGAGTAACGGGTATCTAATAGTCGAGG-AACTCGACTACACCGTTCTCTCTTGTTTT-------------------T----------------------------------TG----------------GTCAGTTTCTA--C----TT---ACTTTTTGT----------AAATTTT-------------------G--------------TTGTG-------------------TA-------------------------------------------------------------AAATTAATATTTCTG----ATT------------------TCTAAACTCCA---T--------------------------TTTAAAATATT-------------------------TTCTT-----------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
G-------------------------------------------------------------------------GGTATCTGACAGTCGAGG-CACTCGACTATAGCGTTCTTCCTTCTTTT-------------------T----------------------------------G-----------------TTCTGTTTACAAAAT--------TATAATCTT----------GACCTTC-------------------ATTTTTACCTG------------------------------------------------------------------------------------------------------------------------------------------TA-----ATATTATATTTATAAATTAT------ATTGACCTTGTTTTA-------------------------TT-----------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
G-------------------------------------------------------------------------GGTATCTGATAGTCGGGG-CACCCGACTATAGCGTTCTCTCTTGTTTA-------------------A----------------------------------T-----------------GTTAGTTTTGGT-AGT-------C-----GTTGCTTTTGGTTGGGTTTT----------------------------------TAT--CATAAAAAAATCCAC-----------------------------------------------------------------------TAACT-------------------------------TTGCGATTTTT---T---------------------------------------TTTTAAAACT------------GGTTAG-----------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
G-------------------------------------------------------------------------GGTATCTTATGGTCGCGG-CACTCGACTATAGCGTTTCCTCTTGTTTT-------------------A----------------------------------T-----------------TTGTATTTCT-------------------TTT----------TATTTTT-------------------ATATCATTTT---------------------------------------------------------------------------------AT---TTTTATAAATTAATATTTTTATATCATT-----------------------------------------------------------TT--TAATGTATAT----------------------TTTTA-----------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
G-------------------------------------------------------------------------GGTATCTGATAGTCGGGG-AACTCGACTATAGCATTCTTTCTTGTTAC-------------------T----------------------------------T-----------------TTTATTATTATT-ATT-------ATTAT-TAT----------TATTATT-------------------GTTATTACTTT------------------------------------------------------------------------------------------------------------------------------------------TA-----TT-------------------------------------------------------------ATTAT-----------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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G-------------------------------------------------------------------------GGTATCTGATAGTCGGGG-AAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................22201.603200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000020000000000000000000000000
................................................................................................TCGACTATAGCATTCTTTCTTGTTAC-------------------........................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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..............................................................................TCTGATAGTCGGGG-AACTCGAC................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.3570000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000100000000000000000000000000
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.......................................................................................CGGGG-AACTCGACTATAGCATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................22200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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..............................................................................TCTGATAGTCGGGG-AACTCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................GATAGTCGGGG-AACTCGACTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
G-------------------------------------------------------------------------GGTATCTGATAGTCGGGG-A.......................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................TGATAGTCGGGG-AACTCGAC................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1530000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................GGTATCTGATAGTCGGGG-AA......................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.................................................................................GATAGTCGGGG-AACTCGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.............................................................................ATCTGATAGTCGGGG-AACTCGAC................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000001000000000000000000
..............................................................................TCTGATAGTCGGGG-AACTCGACTATA............................................................................................................................................................................................................................................................................................................................................................................................................................................26200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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................................................................................................TCGACTATAGCATTCTTTCT.................................................................................................................................................................................................................................................................................................................................................................................................................................20100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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................................................................................TGATAGTCGGGG-AACTCGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.................................................................................GATAGTCGGGG-AACTCGAC................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.................................................................................................................................................................................................................T-------ATTAT-TAT----------TATTATT-------------------GTTATT.........................................................................................................................................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................TATCTGATAGTCGGGG-AACT....................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................ACTCGACTATAGCATTCTTT...................................................................................................................................................................................................................................................................................................................................................................................................................................20130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.............................................................................ATCTGATAGTCGGGG-AACT....................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................GTATCTGATAGTCGGGG-A.......................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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........................................................................................GGGG-AACTCGACTATAGCAT........................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................ATAGTCGGGG-AACTCGACTATAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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...............................................................................CTGATAGTCGGGG-AACTCGACT...............................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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G-------------------------------------------------------------------------GGTATCTGATAGTCGGGG-........................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................ATT-------ATTAT-TAT----------TATTATT-------------------GTTA...........................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.....................................................................................GTCGGGG-AACTCGACTATAGCATTC......................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................TCTGATAGTCGGGG-AACTCGACTATAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................27200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................GGTATCTGATAGTCGGGG-AACTCGACTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................28200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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...........................................................................GTATCTGATAGTCGGGG-AACTCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...........................................................................................G-AACTCGACTATAGCATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
G-------------------------------------------------------------------------GGTATCTGATAGTCGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
................................................................................................................................................................................................................TT-------ATTAT-TAT----------TATTATT-------------------GTTAT..........................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................GGTATCTGATAGTCGGGG-........................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................TCTGATAGTCGGGG-AACT....................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................GGGG-AACTCGACTATAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................GATAGTCGGGG-AACTCGACT...............................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...............................................................................CTGATAGTCGGGG-AACTCGACTAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................CTGATAGTCGGGG-AACTCGAC................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..........................................................................................GG-AACTCGACTATAGCATTCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................TAT-TAT----------TATTATT-------------------GTTATT.........................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................GTCGGGG-AACTCGACTATAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
G-------------------------------------------------------------------------GGTATCTGATAGTCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................17200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
G-------------------------------------------------------------------------GGTATCTGATAGTCGGGG-AA......................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................GGTATCTGATAGTCGGGG-AACTCGAC................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................AGTCGGGG-AACTCGACTATAGCAT........................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001
................................................................................................................................................................................................................TT-------ATTAT-TAT----------TATTATT-------------------GTTA...........................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
......................................................................................TCGGGG-AACTCGACTATAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................GGG-AACTCGACTATAGCATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................G-AACTCGACTATAGCATTCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................TCGGGG-AACTCGACTATAGCATTC......................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................T-------ATTAT-TAT----------TATTATT-------------------GTT............................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GT---------------------------------------------------------------------------ATCTGATAATCGGGG-AACTCGACTATTGCTTTCTCTCGTGTTTC-------------------T----------------------------------A-----------------TTTATTTAATTT-ATT-------ATTATTATT----------ATTTTTT-------------------TTTTTTTTTT--------------------------------------------------------------------------------------------------------TTATCA---------------------------------ACAAT--------------TT-----------AAAGAAGTT--TTAATTG----------------ATCAA-----------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................................TCTGATAATCGGGG-AACTCGACTAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................2585.6345006000520329000000
.T---------------------------------------------------------------------------ATCTGATAATCGGGG-AACTCGACTAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................2781.501210200034020000000
GT---------------------------------------------------------------------------ATCTGATAATCGGGG-A.......................................................................................................................................................................................................................................................................................................................................................................................................................................................18150.8713000001300000000000
.............................................................................ATCTGATAATCGGGG-AACTCGACTAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................2680.63500100002002000000
.T---------------------------------------------------------------------------ATCTGATAATCGGGG-AACTCGAC................................................................................................................................................................................................................................................................................................................................................................................................................................................2480.25200000000011000000
.................................................................................GATAATCGGGG-AACTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................16120.25300000000003000000
...............................................................................CTGATAATCGGGG-AACTCGACTAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................2480.13100000000001000000
................................................................................TGATAATCGGGG-AACTCGACTAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................2380.13100000000001000000
.................................................................................GATAATCGGGG-AACTCGACTAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................2280.13100000000001000000
..............................................................................TCTGATAATCGGGG-AACTCGACTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................2480.13100000001000000000
GT---------------------------------------------------------------------------ATCTGATAATCGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................16170.12200000000002000000
...........................................................................................................................................................................................................................TATTATT----------ATTTTTT-------------------TTTTTTTTTT--------------------------------------------------------------------------------------------------------.............................................................................................................................................................24140.07100000001000000000
..............................................................................TCTGATAATCGGGG-AACTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................19170.06100000000001000000
GT---------------------------------------------------------------------------ATCTGATAATCGGGG-T.......................................................................................................................................................................................................................................................................................................................................................................................................................................................18180.06100000000001000000
.................................................................................................................................................................................................................T-------ATTATTATT----------ATTTTTT-------------------TTTTTTTT.......................................................................................................................................................................................................................................................................25200.05100000000010000000
.................................................................................................................................................................................................................................................TT-------------------TTTTTTTTTT--------------------------------------------------------------------------------------------------------TTA..........................................................................................................................................................15200.05100000001000000000
............................................................................................................................................................................................................................................ATTTTTT-------------------TTTTTTTTTT--------------------------------------------------------------------------------------------------------TT...........................................................................................................................................................19200.05100000000001000000
droSec2
GACG-GTA---------------------------------------------------------------ACGGGTATCTGATAGTCGGGG-AACTCGACTATAGCATTCTCTCTTGTTTT-------------------T----------------------------------T-----------------TTTTATAT----------------------------------A----------------------------------------------------GATTCCGC-----------------------------------------------------------------------TTTC---------------------------------TG--------------------------------------------CCGTT--------------------------TTCT-----------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................................................................................CGACTATAGCATTCTCTCTTGTTTT-------------------........................................................................................................................................................................................................................................................................................................................................................................................................25200.0511000
...............................................................................................CTCGACTATAGCATTCTCTCTTGTT.............................................................................................................................................................................................................................................................................................................................................................................................................................25200.0511000
..........................................................................GGTATCTGATAGTCGGGG-AAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0511000
.......................................................................................CGGGG-AACTCGACTATAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0511000
droYak3
G-------------------------------------------------------------------------GGTATCAGATAGTCGGGG-AACTCGACTATAGCGTTCTCTCTTGTTTT-------------------T----------------------------------T-----------------GTTTCTTTC----A----TTTTTG-----TTT----------AATTTGTGTGTTTATTTTTCGTTTTTAATCAGTGCTTT----CC--TTTGAATGATTCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTCA-----------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................................CAGATAGTCGGGG-AACTCGACT...............................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05110000000000
droEre2
ATTT-GAACTTCCA----------------------------------------------CTAGCTGAGTAACGGGTATCTGATAGTCGGAA-AACTAG-CCATAGAATTCTATCTTGTTTT-------------------G----------------------------------T-----------------ATATCTTTT----A----TT---ATTCTGTTT----------GGATTTT-------------------GCTTTACGCCTCCT---T--CTG----------------------------------------------------------------------------------------------------------------------------GTTTTT---TT------TTT-AAACTTAGCCTGACGTTGACGAT--------------------------------G-----------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
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Generated: 05/18/2015 at 01:32 AM