dmo_1886

Name	Class	Family	Strand
T-rich	Low_complexity	Low_complexity	+

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## ATCATTAATTATTTAGTTTCTTTCTCGCATTAAATGGATATTTTTCTTTAATTACATTTGTGTAAATCTATTAATATTAATATTTTTTATTTTTATTATTATTGCCCTGCATTAATTTTTTTGTTTTATTATATTTACTATATGTAATTTTGTAAATTTTTATAATTATTTCTAATTATTTATATATTTCTTTTTGCGTAGGCTGAAAAGTTCACATTCCAAACGGAGGTGAATCGCATGATGAAGCTGAT ************************************************(((((((.((.((((((....(((((..((((.....))))..)))))(((.(((...))).))).................)))))))).)))))))..(((((((..(((.((....)).)))..))))))).................************************************************	Read size	Hit Count	Total Norm	Total	M046 female body	M060 embryo
....................................................................................................................................................................................................................................GTGAATCGCATGATGAAGCT...	20	1	2.00	2	2	0
......................................................................................................................................................................................................................................GAATCGCATGATGAAGCTG..	19	1	1.00	1	1	0
..........................................................................................................................................................................................................................CCAAACGGAGGTGAATCGC..............	19	1	1.00	1	0	1
.......................................................................................................................................................................................................................................AATCGCATGATGAAGCTGAT	20	1	1.00	1	1	0
...................................................................................................................................................................................................................................GGTGAATCGCATGATGAAGCT...	21	1	1.00	1	1	0
.................................................................................................ATTATTGCCCTGCATTAA........................................................................................................................................	18	1	1.00	1	1	0
.......................................................................................................................................................................................................................ATTCCAAACGGAGGTGAAT.................	19	1	1.00	1	1	0

TAGTAATTAATAAATCAAAGAAAGAGCGTAATTTACCTATAAAAAGAAATTAATGTAAACACATTTAGATAATTATAATTATAAAAAATAAAAATAATAATAACGGGACGTAATTAAAAAAACAAAATAATATAAATGATATACATTAAAACATTTAAAAATATTAATAAAGATTAATAAATATATAAAGAAAAACGCATCCGACTTTTCAAGTGTAAGGTTTGCCTCCACTTAGCGTACTACTTCGACTA ************************************************(((((((.((.((((((....(((((..((((.....))))..)))))(((.(((...))).))).................)))))))).)))))))..(((((((..(((.((....)).)))..))))))).................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M060 embryo
.................................................................................................................................................................................................................................CTCGACTTAGAGTACTACT.......	19	2	4	0.25	1	1

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6540:9805908-9806158 +	dmo_1886	ATCATTAA---------------------------------------------------TTATTTAG---TTTCTTT--------------------C-----------------------------------------TC-------------------GCA--------------------------------------------------------------------------------------------------------------------------TTAAATGGATATTTTTCTTTAATTACATTTGTGTAAATCTATTAATATTAATATTTTTTATTT---------------------------------------------------------------------------------------------------TTATTATT-A--TTGCCCTG-CAT--------------------TAATTTTTTTGTTTTATTATATTTACTATATGTAATTTTGTA-AATTTTTATA---------------------------------------------------------------------------ATTATTTC---TAAT-----T----ATTTATATATTTCTTTTTGCGTAGGCTGAAAAGTTCACATTCCAAACGGAGGTGAATCGCATGATGAAGCTGAT
droVir3	scaffold_12855:3383954-3384163 -		CCCAGCTG---------------------------------------------------TTAGCTGG---CTT------------------------------------------AATAT--GCATTTGAACTTCCTTCTGCACAATAAAATAAAACCCCACACTAAAAAAGAGTTTAGTGTTTTTGGTGTTTGCCATTAACGTGTTTGGTCTCATTTAG-------------------------------------------------------------------------------------------------------------------------------------------AGTAACTTTGTTTTCTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTTCTTTT-------------TCCCCTCTCAGGCTGAGAAGTTCACATTCCAAACGGAGGTCAATCGCATGATGAAGCTGAT
droGri2	scaffold_14906:6066708-6066926 -		ATCTATCA---------------------------------------------------AAATCATTGAGCTTTAAACAATTAGAATAGGTTAATTGAAATTAATTAAATTGCTCAATATAAGACTGTAAATTTTTTTCTCGCCAAGAA---------------------AAT-------ATTTGTGACGTGTCCAAC---------TGGACTTATTTAAATCTTATCTTATGTTAATTGATTATTGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTTGCAGGCGGAAAAGTTTACATTCCAAACGGAGGTGAATCGCATGATGAAGCTGAT
droWil2	scf2_1100000004963:3773121-3773300 +		TTGTTAAG----------------------------------------------------GATTTTG---TTCCTTT--------------------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTTTTTTGTTGTTGTTGTTCATTATTATTATTATTATTATTATTATTATTA-TTATTATTATTATTATTATT-A--TT--------AT--------------------TATTATTATTATT-------------------------------------CTTATTATTATTATTATTATTATT-----------------------------------------------ATTATTAATT----TTTCTTCT------------------------------------------------------------GAATTTTCAATTTGTTCAAATATT
dp5	2:8313465-8313588 -		TATATATG--------------------------------GTACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--ATTGAATA-----------------------------------------------TTGTATATATATTTATTAATTTTTTTTTTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGTATTTCT-------------TTCGTGGGCAGGCGGAGAAGTTCACTTTCCAGACAGAAGTGAACCGCATGATGAAACTGAT
droPer2	scaffold_0:2148984-2149083 -		TTGTATGA---------------------------------------------------ATATTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTTGCGTATTTCT-------------TTTGTGGGCAGGCGGAGAAGTTCACTTTCCAGACAGAAGTGAACCGCATGATGAAACTGAT
droAna3	scaffold_13340:21909438-21909571 +		TTTCTTTTTTTTTGTATATCT-TGTATTATGATCCGTAAAGTACA-----CG---------------------------------------------------------------------------------------------------TAAGACTTTGAATTAAATAAAT-------ATTT----------------------------------------------------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTTGACCAGGCCGAGAAGTTCACTTTCCAAACCGAAGTGAACCGAATGATGAAGCTCAT
droBip1	scf7180000396583:296345-296476 -		TGTTTCATTTTTTTTATTTTTCT---GTATAATCCGTAAAGTACA-----CG---------------------------------------------------------------------------------------------------TAAGAGTTTGTATTTAACAAAT-------ATTA----------------------------------------------------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTTGGACAGGCCGAAAAGTTCACTTTCCAAACCGAAGTGAACCGAATGATGAAGCTCAT
droKik1	scf7180000302610:1543678-1543932 +		TACATATTTT--------------------------------TCAGTTTATGTATTTATTTAATTTTTA-TTAAAT--------------------TTATTTAGTTATATTAATTTATATATATTTATTAATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTT---------------------------------------------------------------------------------------------------CATTTTT--------TATTTATTAACGTATT-TATTGATTGATATTTTTCTTTATTTTTTAATTTTTGTTTTTAAATATATTTAT--------------------------T-------------------CGTATAGCAACAAGTTTTTAGAATTTTTTTTTAGAGTAATTATTTTAGAATA----ATTATTTT----------------------------------------------------------TTATAATATAAATTTTGATTTTCTTATTTCAAA
droFic1	scf7180000453826:161034-161124 -		TATGATCA---------------------------------------------------GTGTTTCC---TTTGTTT--------------------C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------TTTTTTTTCTGCAGGCAGAGAAGTTCACTTTCCAAACGGAGGTCAACCGCATGATGAAGCTAAT
droEle1	scf7180000491280:4256075-4256143 -		TTTCCTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTCTCGGCAGGCGGAGAAGTTCACCTTCCAAACGGAGGTCAACCGCATGATGAAGCTGAT
droRho1	scf7180000775259:1107-1299 -		ATTATTAA---------------------------------------------------TTATTAAT---TATTAAT--------------------T-----------------------------------------AT--------------------TA--------------------------------------------------------------------------------------------------------------------------ATTATTAATTATTAATTATTAATTATTAATTA-TTAATTATTAATTATTAATTAT--------------------------------------------------------------------------------------------TAATTAT--------TAATTATTAA--TTATTAAT-TAT--------------------TAATTATTAATTATTAAT-TATTAATTATTAATTATTAATT-----------------------------TATTA----------------------------------------------ATTATTAATT--------------------------------------------------------------------ATTAATTATTAATTATTAATTATTAATT
droBia1	scf7180000302075:3041092-3041145 -		----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGGCCGAGAAGTTTACCTTCCAGACGGAGGTCAACCGCATGATGAAGCTCAT
droTak1	scf7180000415177:109855-109906 +		------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCCGAGAAATTCACCTTCCAAACGGAGGTGAACCGCATGATGAAGCTGAT
droEug1	scf7180000409277:935392-935517 +		GAATATGT---------------------------------------------------AATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCACTATTGTAACAGTTTATATACAACAAAATGCAA--------------------------------------------------ATCAAAGTGTTGCGTTTACCTTATCT----------------------------------------------------------------------------------------------------------------CT--------------------CACCTCTTATGTTTTATTATGTCTATTATCTATAATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCAACACTTTTA
dm3	chrUextra:7927277-7927471 +		ATATTTAT---------------------------------------------------ATAACTTTAA-TTTAATA--------------------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT---ACATAT--TTGGTATATATATATATATATATATATATATATATATTTATAT---------------------------------------------------------------------------------------------------TTACATA--------TATATATATTTATATA-CATTTATTAATATATATGTATATATACATATATATATATATATACATATATAT--------------------------A-------------------CAT--------------------------------------------------------ATATA----------------------------------------------------------TATATATATATATATATATATATATAGGTTAAA
droSim2	3r:23176852-23176928 +		TTCTTTGTCT---------------------------------------------------TT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTGTGCAGGCTGAGAAGTTCACTTTCCAAACGGAGGTCAACCGCATGATGAAGCTGAT
droSec2	scaffold_41:90519-90636 -		TCATTGATT---------------------------------------------------TCTTTTC-------------------------------------------------------------------------A-------------------------------------------------------------------------------------------------------------------AAAC-TAAAGTATTTCAAGATCCAAAGCATAT--CTGGCTTG-----------------------------------------------TTTAATTTACATCTAT---TTC------TTTCTTTTAGTATTTTCGTTACT-----------------------------------------------------------------GTAATA-AAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATTTACTCG
droYak3	3R:22722403-22722485 -		TTTCCCTTTTTCTTTGTCTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTATGCAGGCCGAGAAGTTCACTTTCCAAACGGAGGTGAACCGCATGATGAAGCTGAT
droEre2	scaffold_4690:7671573-7671734 +		TTATTTATTTAGTATATTTATCA---GTGCAAATTATTATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTATTTGTTATTATTATTATTATTATTATTATTATTG-TTA--------------------------------------------------------TGTTATTATTATATTATATTATTATTATATTATTATATTATATTATTATT---------------------------------------------------------------------------------------------------------------------------------------------ATTATTATATTATTATTATTATTATTATTTGTG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

ATCATTAA---------------------------------------------------TTATTTAG---TTTCTTT--------------------C-----------------------------------------TC-------------------GCA--------------------------------------------------------------------------------------------------------------------------TTAAATGGATATTTTTCTTTAATTACATTTGTGTAAATCTATTAATATTAATATTTTTTATTT---------------------------------------------------------------------------------------------------TTATTATT-A--TTGCCCTG-CAT--------------------TAATTTTTTTGTTTTATTATATTTACTATATGTAATTTTGTA-AATTTTTATA---------------------------------------------------------------------------ATTATTTC---TAAT-----T----ATTTATATATTTCTTTTTGCGTAGGCTGAAAAGTTCACATTCCAAACGGAGGTGAATCGCATGATGAAGCTGAT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATCGCATGATGAAGCT...	20	1	2.00	2	2	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCGCATGATGAAGCTG..	19	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAACGGAGGTGAATCGC..............	19	1	1.00	1	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGCATGATGAAGCTGAT	20	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAATCGCATGATGAAGCT...	21	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATT-A--TTGCCCTG-CAT--------------------TAA................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCAAACGGAGGTGAAT.................	19	1	1.00	1	1	0	0	0	0	0

droVir3

CCCAGCTG---------------------------------------------------TTAGCTGG---CTT------------------------------------------AATAT--GCATTTGAACTTCCTTCTGCACAATAAAATAAAACCCCACACTAAAAAAGAGTTTAGTGTTTTTGGTGTTTGCCATTAACGTGTTTGGTCTCATTTAG-------------------------------------------------------------------------------------------------------------------------------------------AGTAACTTTGTTTTCTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTTCTTTT-------------TCCCCTCTCAGGCTGAGAAGTTCACATTCCAAACGGAGGTCAATCGCATGATGAAGCTGAT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAATCGCATGATGAAGCT...	20	1	4.00	4	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTCCAAACGGAGGTCAAT.................	22	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCAATCGCATGATGAAGCT...	21	1	2.00	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCCAAACGGAGGTCAAT.................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGGAGGTCAATCGCATGAT.........	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCGCATGATGAAGCT...	18	1	2.00	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGGAGGTCAATCGCATGATGAA......	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAGGTCAATCGCATGATGAAGC....	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................AATAT--GCATTTGAACTTCCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGAGGTCAATCGCATGATGAAGCT...	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAACGGAGGTCAATCGCATGATGAAGCT...	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCCAAACGGAGGTCAATCGCATGAT.........	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGAGGTCAATCGCATGATG........	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................AAAAGAGTTTAGTGTTTTTGGTGTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAACGGAGGTCAATCGCATGATGAAGC....	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGGAGGTCAATCGCATGATGAAGCT...	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTCCAAACGGAGGT.....................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCAAACGGAGGTCAATCGCAT............	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................CAATAAAATAAAACCCCACACT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................GTTTAGTGTTTTTGGTGTTTGCCATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTCCAAACGGAGGTCAAT.................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGCATGATGAAGCTGAT	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGCATGATGAAGCTGA.	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTTCACATTCCAAACGGAGGTCAAT.................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCAAACGGAGGTCAAT.................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAACGGAGGTCAATCGCATGATGA.......	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAACGGAGGTCAATCGCATGAT.........	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCACATTCCAAACGGAGGTCA...................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAATCGCATGATGAAGCTGAT	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCAAACGGAGGTCAATCGCATGAT.........	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCAATCGCATGATGAA......	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGTCAATCGCATGATGAAGCT...	24	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

ATCTATCA---------------------------------------------------AAATCATTGAGCTTTAAACAATTAGAATAGGTTAATTGAAATTAATTAAATTGCTCAATATAAGACTGTAAATTTTTTTCTCGCCAAGAA---------------------AAT-------ATTTGTGACGTGTCCAAC---------TGGACTTATTTAAATCTTATCTTATGTTAATTGATTATTGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTTGCAGGCGGAAAAGTTTACATTCCAAACGGAGGTGAATCGCATGATGAAGCTGAT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...........................................................................................................................................................................................................................................AATTGATTATTGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTTGCA...................................................	21	1	1.00	1	0	1
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTGAATCGCATGATGAAGCT...	23	1	1.00	1	1	0

droWil2

TTGTTAAG----------------------------------------------------GATTTTG---TTCCTTT--------------------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTTTTTTGTTGTTGTTGTTCATTATTATTATTATTATTATTATTATTATTA-TTATTATTATTATTATTATT-A--TT--------AT--------------------TATTATTATTATT-------------------------------------CTTATTATTATTATTATTATTATT-----------------------------------------------ATTATTAATT----TTTCTTCT------------------------------------------------------------GAATTTTCAATTTGTTCAAATATT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

dp5

TATATATG--------------------------------GTACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--ATTGAATA-----------------------------------------------TTGTATATATATTTATTAATTTTTTTTTTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGTATTTCT-------------TTCGTGGGCAGGCGGAGAAGTTCACTTTCCAGACAGAAGTGAACCGCATGATGAAACTGAT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCAGACAGAAGTGAACCGCATGATGA.......	28	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGACAGAAGTGAACCGCATGAT.........	27	1	2.00	2	0	1	0	0	0	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCAGACAGAAGTGAACCGCATGAT.........	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGACAGAAGTGAACCGCAT............	24	1	2.00	2	0	1	0	0	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGAACCGCATGATGA.......	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCAGACAGAAGTGAACCGCATGATG........	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGACAGAAGTGAACCG...............	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGAAGTGAACCGCATGA..........	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGAACCGCATGATGA.......	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGACAGAAGTGAACCGCATG...........	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

TTGTATGA---------------------------------------------------ATATTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTTGCGTATTTCT-------------TTTGTGGGCAGGCGGAGAAGTTCACTTTCCAGACAGAAGTGAACCGCATGATGAAACTGAT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGACAGAAGTGAACCGCATGATGA.......	29	1	7.00	7	7	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCAGACAGAAGTGAACCGCATGATGA.......	28	1	2.00	2	2	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACCGCATGATGAAACTG..	21	1	2.00	2	2	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGACAGAAGTGAACCGCATGATGG.......	29	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCAGACAGAAGTGAACCGCATGAT.........	26	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTTTCCAGACAGAAGTGAACC................	23	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAGAAGTGAACCGCATGATGAAAC....	27	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTCCAGACAGAAGTGAACCGCATGAC.........	28	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGAAGTGAACCGCATGATGA.......	23	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCAGACAGAAGTGAACCGCATG...........	24	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGACAGAAGTGAACCGCATGAT.........	27	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCGGAGAAGTTCACTTTC................................	20	1	1.00	1	0	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTCACTTTCCAGACAGAAGT.....................	24	1	1.00	1	0	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGAAGTGAACCGCATGATGG.......	23	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAGACAGAAGTGAACCGCATGAC.........	27	1	1.00	1	1	0	0	0	0	0
............................................................TATTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTT......................................................................................	18	15	0.07	1	0	0	1	0	0	0

droAna3

TTTCTTTTTTTTTGTATATCT-TGTATTATGATCCGTAAAGTACA-----CG---------------------------------------------------------------------------------------------------TAAGACTTTGAATTAAATAAAT-------ATTT----------------------------------------------------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTTGACCAGGCCGAGAAGTTCACTTTCCAAACCGAAGTGAACCGAATGATGAAGCTCAT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAAACCGAAGTGAACCGAATGATG........	28	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGAACCGAATGATGAAGCTCA.	25	1	1.00	1	0	0	0	0	0	1
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAAACCGAAGTGAACCGAATG...........	25	1	1.00	1	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCGAATGATGAAGCTCAT	20	1	1.00	1	0	0	0	0	1	0

droBip1

TGTTTCATTTTTTTTATTTTTCT---GTATAATCCGTAAAGTACA-----CG---------------------------------------------------------------------------------------------------TAAGAGTTTGTATTTAACAAAT-------ATTA----------------------------------------------------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTTGGACAGGCCGAAAAGTTCACTTTCCAAACCGAAGTGAACCGAATGATGAAGCTCAT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TACATATTTT--------------------------------TCAGTTTATGTATTTATTTAATTTTTA-TTAAAT--------------------TTATTTAGTTATATTAATTTATATATATTTATTAATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTT---------------------------------------------------------------------------------------------------CATTTTT--------TATTTATTAACGTATT-TATTGATTGATATTTTTCTTTATTTTTTAATTTTTGTTTTTAAATATATTTAT--------------------------T-------------------CGTATAGCAACAAGTTTTTAGAATTTTTTTTTAGAGTAATTATTTTAGAATA----ATTATTTT----------------------------------------------------------TTATAATATAAATTTTGATTTTCTTATTTCAAA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TATGATCA---------------------------------------------------GTGTTTCC---TTTGTTT--------------------C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------TTTTTTTTCTGCAGGCAGAGAAGTTCACTTTCCAAACGGAGGTCAACCGCATGATGAAGCTAAT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TTTCCTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTCTCGGCAGGCGGAGAAGTTCACCTTCCAAACGGAGGTCAACCGCATGATGAAGCTGAT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ATTATTAA---------------------------------------------------TTATTAAT---TATTAAT--------------------T-----------------------------------------AT--------------------TA--------------------------------------------------------------------------------------------------------------------------ATTATTAATTATTAATTATTAATTATTAATTA-TTAATTATTAATTATTAATTAT--------------------------------------------------------------------------------------------TAATTAT--------TAATTATTAA--TTATTAAT-TAT--------------------TAATTATTAATTATTAAT-TATTAATTATTAATTATTAATT-----------------------------TATTA----------------------------------------------ATTATTAATT--------------------------------------------------------------------ATTAATTATTAATTATTAATTATTAATT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGGCCGAGAAGTTTACCTTCCAGACGGAGGTCAACCGCATGATGAAGCTCAT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCCGAGAAATTCACCTTCCAAACGGAGGTGAACCGCATGATGAAGCTGAT	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GAATATGT---------------------------------------------------AATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCACTATTGTAACAGTTTATATACAACAAAATGCAA--------------------------------------------------ATCAAAGTGTTGCGTTTACCTTATCT----------------------------------------------------------------------------------------------------------------CT--------------------CACCTCTTATGTTTTATTATGTCTATTATCTATAATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCAACACTTTTA	Size	Hit Count	Total Norm	Total
No Reads

dm3

ATATTTAT---------------------------------------------------ATAACTTTAA-TTTAATA--------------------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT---ACATAT--TTGGTATATATATATATATATATATATATATATATATTTATAT---------------------------------------------------------------------------------------------------TTACATA--------TATATATATTTATATA-CATTTATTAATATATATGTATATATACATATATATATATATATACATATATAT--------------------------A-------------------CAT--------------------------------------------------------ATATA----------------------------------------------------------TATATATATATATATATATATATATAGGTTAAA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATATATAT--------------------------A-------------------CAT--------------------------------------------------------ATATA----------------------------------------------------------T................................	21	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------------------------A-------------------CAT--------------------------------------------------------ATATA----------------------------------------------------------TATATATATATA.....................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT--------------------------A-------------------CAT--------------------------------------------------------ATATA----------------------------------------------------------TATATAT..........................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATATATATATACATATATAT--------------------------A-------------------...........................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATATATATATATACA................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATATATATATATATATAC.................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TTCTTTGTCT---------------------------------------------------TT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTGTGCAGGCTGAGAAGTTCACTTTCCAAACGGAGGTCAACCGCATGATGAAGCTGAT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCGCATGATGAAGCTG..	18	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAACGGAGGTCAACCGCATGATGA.......	27	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGAAGTTCACTTTCCAAACGGA........................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACTTTCCAAACGGAGGTCAACCGCA.............	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCAACCGCATGATGAAGCTG..	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCGCATGATGAAGCTGA.	19	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTGAGAAGTTCACTTTCCAAACGGA........................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

TCATTGATT---------------------------------------------------TCTTTTC-------------------------------------------------------------------------A-------------------------------------------------------------------------------------------------------------------AAAC-TAAAGTATTTCAAGATCCAAAGCATAT--CTGGCTTG-----------------------------------------------TTTAATTTACATCTAT---TTC------TTTCTTTTAGTATTTTCGTTACT-----------------------------------------------------------------GTAATA-AAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATTTACTCG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

TTTCCCTTTTTCTTTGTCTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTATGCAGGCCGAGAAGTTCACTTTCCAAACGGAGGTGAACCGCATGATGAAGCTGAT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCGCATGATGAAGCTGAT	21	1	3.00	3	0	0	0	0	0	0	3	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTCCAAACGGAGGTGAACCGCATGAC.........	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTTCCAAACGGAGGTGAACCGCATGA..........	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCGCATGATGAAGCTGAT	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCACTTTCCAAACGGAGGT.....................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTCCAAACGGAGGTGAACCGCATGA..........	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

TTATTTATTTAGTATATTTATCA---GTGCAAATTATTATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTATTTGTTATTATTATTATTATTATTATTATTATTG-TTA--------------------------------------------------------TGTTATTATTATATTATATTATTATTATATTATTATATTATATTATTATT---------------------------------------------------------------------------------------------------------------------------------------------ATTATTATATTATTATTATTATTATTATTTGTG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dmo_1886

scaffold_6540:9805958-9806108 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-13.3	-13.2	-13.2