ID:

dmo_1871

 Coordinate:

scaffold_6540:8549981-8550265 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dmoj\GI23344-cds]; exon [dmoj_GLEANR_8486:2]; CDS [Dmoj\GI23344-cds]; exon [dmoj_GLEANR_8486:1]; intron [Dmoj\GI23344-in]

Repeatable elements

NameClassFamilyStrand
(TG)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AGAAGAAGCAGCAGCAGAAGCAGCAGCAGAAGAGGAGGCGCGAGGCAAGCGTAGCCTCGCCTGGCCGAGTTTAAGCATGATTTGTGCGTGTCTTTATGACATGAAACACATTCCCCATACGGGCGAATAACTTTATGTGTGACACACACACACACACACACACACACGCACACGCACACGCAGCGCAGTTACAGTTATAGATGGAAACGGAGATGGAGATGGGGAAGGAAGATGGAACTGGAGATACAGTTACACAGATAAAGAGATAGATATACACACACGCACACACACACAGCATGCGACAACGTTTGCTGCAGCTCAGACACTTTCGATAGGGCGCCTCCTGTCAGCAGCACCACCAACACCAACACCAACAGCAGCAGCT
**************************************************...(((......)))(((((((.(((.((...(((((((((((((((.............((((((((....(((..........((((((.........))))))..........)))...(((.......)))..(((.((........))..)))..........))))))))......((..((((......))))..))...)))))))..............))))))))......(((((.(((....))).)))))))))).))))....)))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total V110
male body		 V049
head
 M060
embryo
 V056
head
 M046
female body
.................................................................................................................................................................................................................................................................................................................................................CGCATCCTGTCCGCAGCGCCA........................... 21 3 4 2.25 9 5 0 3 1 0
...................................................................................................................................................................................................................................GAAGATGGAGCAAGAGATACA......................................................................................................................................... 21 3 9 1.89 17 17 0 0 0 0
...................................................................................................................................................................................................................................GAATATGGAACGGGAGATACGGTT...................................................................................................................................... 24 3 1 1.00 1 1 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................CGCCTCCTGTCAGTATCGCCA........................... 21 3 1 1.00 1 0 1 0 0 0
.....................................................................................................................................................................................................................................................................................................................................................TCCTGTCCGCAGCGCCA........................... 17 2 20 0.80 16 0 0 0 16 0
..................................................................................................................................................................................................................................................................................................................................................GAATCCTGTCCGCAGCACCA........................... 20 3 5 0.20 1 0 0 1 0 0
...................................................................................................................................................................................................................................................................................................................................................CCTCCTGTCCGCAGCGCCA........................... 19 2 7 0.14 1 0 0 1 0 0
....................................................................................................................................................................................................................................................................................................................................................CTCCTGTCCGCAGCCCCA........................... 18 2 8 0.13 1 0 1 0 0 0
.................................................................................................................................................................................................................................................................................................................................................CGAATCCTGTCAGCAGCGCCA........................... 21 3 20 0.10 2 2 0 0 0 0
............................GAAGAGGAGGGGCAAGGC................................................................................................................................................................................................................................................................................................................................................... 18 2 14 0.07 1 1 0 0 0 0
..........GCAGCAGAAGCAGCAGCAGA................................................................................................................................................................................................................................................................................................................................................................... 20 0 20 0.05 1 0 0 0 0 1

Anti-sense strand reads

TCTTCTTCGTCGTCGTCTTCGTCGTCGTCTTCTCCTCCGCGCTCCGTTCGCATCGGAGCGGACCGGCTCAAATTCGTACTAAACACGCACAGAAATACTGTACTTTGTGTAAGGGGTATGCCCGCTTATTGAAATACACACTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGCGTGTGCGTCGCGTCAATGTCAATATCTACCTTTGCCTCTACCTCTACCCCTTCCTTCTACCTTGACCTCTATGTCAATGTGTCTATTTCTCTATCTATATGTGTGTGCGTGTGTGTGTGTCGTACGCTGTTGCAAACGACGTCGAGTCTGTGAAAGCTATCCCGCGGAGGACAGTCGTCGTGGTGGTTGTGGTTGTGGTTGTCGTCGTCGA
**************************************************...(((......)))(((((((.(((.((...(((((((((((((((.............((((((((....(((..........((((((.........))))))..........)))...(((.......)))..(((.((........))..)))..........))))))))......((..((((......))))..))...)))))))..............))))))))......(((((.(((....))).)))))))))).))))....)))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V049
head
 V110
male body		 M060
embryo
................................................................................................................................TTGGGAGACACACTGTGTGTGT........................................................................................................................................................................................................................................... 22 3 1 1.00 1 0 1 0 0
...................................................................................................................................................................................................................................CTTCTACCTCGTTCTCTATGT......................................................................................................................................... 21 3 9 0.56 5 5 0 0 0
...........................................................................................................................................................................................................................................................................................TGTGTGGGTGTCGTACGGTGT................................................................................. 21 2 2 0.50 1 1 0 0 0
..............................................................................................................................................................................................................................................................................................................................................................GTCGTGGTGGTTGTGGTTGTGGTTG.......... 25 0 3 0.33 1 0 0 1 0
..................................................................................................................................................................GTGTGCGGGTGGGTGTGCGTCG......................................................................................................................................................................................................... 22 2 4 0.25 1 1 0 0 0
...................................................................................................CTACTGTGTGTAAGGGGTAG.......................................................................................................................................................................................................................................................................... 20 3 4 0.25 1 0 0 1 0
...........................................................................................................................................ACTGTGTGTGTGTGTGTGTGTGT............................................................................................................................................................................................................................... 23 0 20 0.05 1 1 0 0 0
..............................................................................................................................................................................................................................................................................ATATGTGTGTGCGTGTGT................................................................................................. 18 0 20 0.05 1 0 0 1 0
................................................................................................................................................................................................................................................................................ATGTGTGTGCGTGTGTGTGTGT........................................................................................... 22 0 20 0.05 1 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6540:8549931-8550315 - dmo_1871 A-----GAAGAAGCA-----GCAGCAGAAGCAGCAGCAGAAGAGGAGGCGCGAGGCAAGCGT---AGCCTCGCCTG------------------------GCCGAGTTTAAGCATGA-------------T--TTGTGCGTGTC---------------------TTTATGACATGAAACACATTCCCCAT-----------------ACGGGCGAATAACTTTATGTG----TG--AC--ACACA-CA----CACACACA------CAC----ACA---CACGC----------ACACGCACACG----------CAGCGCAGTTACAGTTATAGATGGAAACGGAGA-------------------------TGGAGATGG----------------------------------------------------------------------GGAAGGA-AGATGGAACTGGAGA------------TACAGTTACAC----AGATAAAGAGATAGATA------------------------------------------------------------------------------------------TACACACACGCACACACACACAGCATGCGACAACGTTTGCTGCAGCT----------------------------------------CA--GACACTTTCGA---------------------------------------TAGGGCGCCTCCTGTCAGCAGCACCACCAACACCAACACCAACAGCAGCAGC-------------------------------------T-----------------
droVir3 scaffold_12855:4201724-4201989 - A-----AGTAACAGGACACAGC---------------------------GCGA--------AGCAGGCGACGCCTG------------------------GCCCAGTTAAAGCATGA-------------T--TTGTGCGTGTC---------------------TTTATGACATGGAACACACTCCCCAA-----------------ACGCGCAAATAAC-----ACA----GG--ACACA--G-T------TACACATA------TATAG-----------------------------ATACA----------GATT-GAGATACAGATACAGCTA--------------------------------------------------------------TACA--------GAAATATTCTGG-----------------------------------------------------------------------------------------------------------------TACAGTTCCAGATACATATACGACAGC-------------------------------------------------------------------------------------TGCAGCT-------------------------------------------------------------------GGTTCACTAACAACCCCAACAATTGAGGGGGGTG--------------------TGTGCCTGTCACTAACACCACCAGC-------------------------------------T-----------------
droGri2 scaffold_14906:6800579-6800845 - A-----GGATACAGG-----ACTC----------------------------A----AGGATGTGAGCGTCGCCTG------------------------GCCGAGTTTAAGCATGA-------------T--TTGTGCGTGTC---------------------TTTATGACATGAGACACAATCCCCAT-----------------TCGCGCGAATAACTTTATGTGTGTATGGGAT--A--CT-CA----GACACAGA------TACAG--AT-----ACAG----ATACAGAT--ACTGTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCGATACAAATACAGTTAAAGTTAC--TGACGGCAAC-------------------------------------------------------------------------------------TGCAGCT-------------------------------------------------------------------GCTTCACTAACAACTCAAAAAGTATA-TGGGG-------------CGGCTCCCGAACGCCTGTCACTAACACCACAAGC-------------------------------------T-----------------
droWil2 scf2_1100000004515:1883392-1883572 - T-----AAAGGACTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCCAAA-----------------ACACACTAATAGATGCATGTC----AA--AC--ACT---TACACTTA--CCCT----CAC------ACACAC-ACAC--ACAC----------ACACA----------CAAAGACAC--------------------------------------------------------------------------------------------------TAACTTTGTA--ATG-----GGATAAGGGG----GTC-AAATTGA----------------------------------------------------------------------------------ACGAT---------------------------AGATCTTGACACAGTTAACTCCCAGACAACCACACACACACAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------ACATACAAAAT-------------------------------------G-----------------
dp5 2:19463280-19463519 + T-----TTGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTA----CG--GC--ACACA-CA----CACACACA------CAC-------------GC----------ACGCACACACTTATCCA----TGAGGCAGT------------------------TGCAGTTG------CAGCAGGCAGGAGGC--------------------------------------------------------AA-------------------GAGGCAG-GAGGGGCAGGAGTGGCAGGGAGGGAGA----------CG---GCAGA--------GACACAGACACCGACAAATGTACATTGT----ACGGC---------------------------GTACCT--------------------------------------------------------------TGTAGCTGACGTTCGTTTGGTGAA--------------------------------------TG-----CATCACACAGGGACAACA---A----------------------------AAGCAACAACAA---CAACAATCTGTGCAACAAC-------------------------------------T-----------------
droPer2 scaffold_17:950408-950673 - A-----GAGAAAACA-----GCAAAAGAGGAATGAGGAAAGAGAAATGCGAAAAGCGAGA---------------AAACAAGAACAAAACACTTGACTTGTCATTTTTGACATATAAATGGCGAAACAAATCTT--TGGATATTGTTTTAAA--TGAAGCACACA-----------------------------------------------------------------------------CA---TGCACACA--TACA----CAC------ACACAC-A--CACACAC----------ACACACAAAAACCC------------------------------------------------------------------------------------------------------------AGACAGAGAGAGAGA-------------------GGAAG-AAGGAGAGAAAGAGAACGAGAATGAGA----------CAGAGACAGA---------------------------------------------------GAGACG-------------------------------------------AACATAGATAGACAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGAC-------------------------------------A-----------------
droAna3 scaffold_13340:9518910-9519199 - A-----AAAGGA-----------------------------------------------------CCCTGGCACAG------------------------GCCGAGTTTAAGCATGA-------------T--TTGTGCGTGTC---------------------TTTATGACACGGAACACATTCGCCACCAGATTCCCCTCTCCATACTCG---GTATCCTTCT-------------------------------------------------------------------------------------------------------------------------------GCTGCTTCTGCTTCTGATACTTTTCATCGGGGAAGGACGACACAGTTGCAGA--------TACGAGTAGATATGGAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGATGACAAGCCGCTCGTTTCGCTAACAA---G----------------------------CAAAGTATCCGCTACTGACACCGCC------AGCTGTCGCTCAAGCTTTCCTTCTTGTTCACCACCCTCTCTCCAAAAAAATGAAGCAA
droBip1 scf7180000395529:117370-117544 + T-----GAAG-----------------------------------------------------------------------------------------------------------------------------------------------------CACATA----------------------------------------------------------------------------------------CACACACA------CACACAC-------ACTC----------GCTTACACTCG---------------------------CAGCCAAGGGACAGTCCTGCGCAG------CAGCAGATACACTTCCA-----------------------GA-----------------------------------------------------------------------------------TACAGATACAC----AGACAGAGACGGAGATA--------------GG--CAGGCATCTGAAACGAGAGCAGGCTGC--------------------------TGTGGTTGGCT--------TACACACATGCACAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACAC-------------------------------------A----------------G
droKik1 scf7180000302643:882934-883139 - G-----GAAGCAGCA-----GCAGCAACAGCAGCAGCAGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAG----------------------------------------------------------------------AAGCAGC-A-GCGCAGTAGCAGT-------------------------------------------------------------------TGCGCTCTGCAGCGACGTCA-----------------------------------------------------------------------------------------------------GTTTTGAGTACATAACAAATAAATGCTAAAATTTCACGAAATACCAAAAAACGCACACCCAA-------AAAT---G----------------------------CGCGCACACCAATGCAAACACA--C------AAATACAACACACACATACATACGCACGCGCCGCACTCACA-----------------
droFic1 scf7180000453800:1093797-1093872 + T-----TAAAAGCCG-----GCAG----------------------------A--------AGGACCAAGAACCTG------------------------ACTGAGTTTAAGCATGA-------------T--TTGTGCGTGTC---------------------TTTATGACACCGAACAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000491228:466661-466747 + T-----GTTT-----------------------------------------------------------------------------------------------------------------------------------------------------CACACA----------------------------------------------------------------------------------------CACACACA------CACACAC-------ACAC----ACACACAC--ACACAC-----------------ACTCGCAGAAATAGAGGGGGGCGGGGA-------------------------AGTGGCTTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAAG-------------------------------------A-----------------
droRho1 scf7180000779654:5388-5496 - G-----A--------------------------------------------------------------------------------------------------TTTGGAATGTGA-------------T--TTGGATATGGA--TTCGGATTTGGACCACACA--------------------C-ATGG-----------------GCAC-----TCGTGTTATGTG----TC--GCACA--CA-CA----CACACACA------CACAC--AC-----ACAC----------ACACACACACG----------C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----------------
droBia1 scf7180000302408:2648697-2648853 - G-----T---------------------------------------------------------------------------------------------GCGTCCTCGGGGCATAATTTCCCAA--------T--TGCAGGCTCATGTGCC--GCACACACACA-----------------------------------------------------------------------------CA---------TACACACA------CACACACACACAC-A--CACACAC----------ACACACACACACAC------------------------------------------------------------------------------------------------------------ACACACACACACACA----------------------------------------------------------CACACACACACACA---------------------------------------------------CACACA-------------------------------------------CACACACACACACAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACAC-------------------------------------A-----------------
droTak1 scf7180000414555:16872-16986 - A-----CACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA-CA----CACACACA------CAC----ACA---CACAC----------ACACACACACG----------TGTTGCAGG------------------------------------------------------------------------------------------AAAAATTCAGGGAAATGGGAAGCGGAAAAAGTGAGAAC----GGA-AAATGCA-------------------------------------ACAGA------------------------------------------------------------------------AA-------------------------------------------------------------------------------------------------------AACTAGCGACGC---------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409802:1405195-1405277 - CAACGTTAAAAGCCA-----GCAG----------------------------A--------AGGACACGGAACCTG------------------------GCTGAGTTTAAGAATGA-------------T--TTGTGCGTGTC------TC-------------TTTATGACACGCAGCAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chrX:13738524-13738737 + T-----GACT-----------------------------------------------------------------------------------------------------------------------------------------------------CACACA----------------------------------------------------------------------------------------CACACACA------CACACAC-------ACAC----------ACACACACACGCATGCACGCTGTGT---------------GTGGGTGAGAG-------TGAG------TTTCTT-----------TG-------------------GACATGGAAGTGGAAATATTTCACGGCGA---------TGACCAGTAAACGAGGTAAAC-G-AAGGCGCAAAAGT-------------------------------------------------------------------CAATGCATCCGACACACACACACACACACACACA------------------------------------------------------------------------------------------------------------------------------------CATAGGCATACATTTCACACACACGTTC---G----------------------------CAGGGGCGC--------------------------------------------------------------------------------
droSim2 x:18562035-18562299 - C-----ACAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCACACCCACACCCA------CACAC-----------------------------ACACG----------CATCCCAATCACAGTCACAGCCAGGACAGGAGCCACAGCAGCAGCAGCAGCAGCTCAATGGCCACGG----------------------------------------------------------------------AGGAGGC-G-GAGGAGCAGGAGC-------------------------------------------------------------------TGCGGGATCAGGAGCAGGCGGACGATCACCTGCATCAGCATCAACAGGC---------------------GTCG--------------------CAGCA----------------------------------------GTATCTGCTGGCGGCGC--GCCACTACCACAGCAGCACGCCCAACACGCTCAGCA---G----------------------------CAGCAACACCAATCCCAGCACGCCCAGCAGCAAC-------------------------------------T-----------------
droSec2 scaffold_21:431961-432204 - C-----ACAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCGAAACACACACA------CAC----ACA---CACGC----------GCGCGCACACA----------AAGT---------------GCAAGGACAGGCCAAGAAGAAG------CAGCAG--------------------------------TACA--------AAAAAGGATAAGTGCAACAGCAAGCATAAGAAGTAAGCCA------------------------------------------------------------------------------------------------------------------GGCAACTGCAACAGCAACATTTGCTGCAAGTGCAGCCCCCACAGCCGTCGCCGCCGCC------------------------------------------------------------------------------AAGTTCAAAATC--AACGCCTGACAATGACAAAG---G----------------------------CAGCAGCAGAAGCAGCAACAGCAACAGCAACAAC-------------------------------------A-----------------
droYak3 X:11678866-11679130 + C-----ACAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------CACACCCACACACAC-------------ACGC----------ACACGCACACG----------CATCCCAATCACAGTCTCAGCCAGGACAGGAGCCACAGCAG------CAGCAGCTCAATGGCCACGG----------------------------------------------------------------------AGGAGGC-G-GAGGAGCAGGAGC-------------------------------------------------------------------TGCGGGATCAGGAGCAGGCGGACGATCACCTGCATCAGCATCAGCAGGC---------------------GTCG--------------------CAGCA----------------------------------------GTATCTGCTGGCGGCGC--GCCATTACCACAGCAGCACGCCCAACACGCTCAGCA---G----------------------------CAGCAACACCAATCCCAGCACGCCCAGCAGCAAC-------------------------------------T-----------------
droEre2 scaffold_4690:9894875-9895127 - C-----ACAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------CACACACA------CACGC-----------------------------ACACG----------CATCCCAATCACAGTCACAGCCAGGACAGGAGCCACAGCAG------CAGCAGCTCAATGGCCACGG----------------------------------------------------------------------AGGAGGC-G-GAGGAGCAGGAGC-------------------------------------------------------------------TGCGGGATCAGGAGCAGGCGGACGATCACCTGCATCAGCATCAGCAGGC---------------------GTCT--------------------CAGCA----------------------------------------GTATCTGCTGGCGGCGC--GCCACTATCACAGCAGCACGCCCAACACGCTCAGCA---G----------------------------CAGCAACACCAATCCCAGCACGCCCAGCAGCAAC-------------------------------------T-----------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
A-----GAAGAAGCA-----GCAGCAGAAGCAGCAGCAGAAGAGGAGGCGCGAGGCAAGCGT---AGCCTCGCCTG------------------------GCCGAGTTTAAGCATGA-------------T--TTGTGCGTGTC---------------------TTTATGACATGAAACACATTCCCCAT-----------------ACGGGCGAATAACTTTATGTG----TG--AC--ACACA-CA----CACACACA------CAC----ACA---CACGC----------ACACGCACACG----------CAGCGCAGTTACAGTTATAGATGGAAACGGAGA-------------------------TGGAGATGG----------------------------------------------------------------------GGAAGGA-AGATGGAACTGGAGA------------TACAGTTACAC----AGATAAAGAGATAGATA------------------------------------------------------------------------------------------TACACACACGCACACACACACAGCATGCGACAACGTTTGCTGCAGCT----------------------------------------CA--GACACTTTCGA---------------------------------------TAGGGCGCCTCCTGTCAGCAGCACCACCAACACCAACACCAACAGCAGCAGC-------------------------------------T-----------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................GCAGCAGAAGCAGCAGCAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
droVir3
A-----AGTAACAGGACACAGC---------------------------GCGA--------AGCAGGCGACGCCTG------------------------GCCCAGTTAAAGCATGA-------------T--TTGTGCGTGTC---------------------TTTATGACATGGAACACACTCCCCAA-----------------ACGCGCAAATAAC-----ACA----GG--ACACA--G-T------TACACATA------TATAG-----------------------------ATACA----------GATT-GAGATACAGATACAGCTA--------------------------------------------------------------TACA--------GAAATATTCTGG-----------------------------------------------------------------------------------------------------------------TACAGTTCCAGATACATATACGACAGC-------------------------------------------------------------------------------------TGCAGCT-------------------------------------------------------------------GGTTCACTAACAACCCCAACAATTGAGGGGGGTG--------------------TGTGCCTGTCACTAACACCACCAGC-------------------------------------T-----------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................AATATTCTGG-----------------------------------------------------------------------------------------------------------------TACAGTTCC.......................................................................................................................................................................................................................................................................................................................1911.001000100000000000000000000000000000000000000000000000000000000000
droGri2
A-----GGATACAGG-----ACTC----------------------------A----AGGATGTGAGCGTCGCCTG------------------------GCCGAGTTTAAGCATGA-------------T--TTGTGCGTGTC---------------------TTTATGACATGAGACACAATCCCCAT-----------------TCGCGCGAATAACTTTATGTGTGTATGGGAT--A--CT-CA----GACACAGA------TACAG--AT-----ACAG----ATACAGAT--ACTGTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCGATACAAATACAGTTAAAGTTAC--TGACGGCAAC-------------------------------------------------------------------------------------TGCAGCT-------------------------------------------------------------------GCTTCACTAACAACTCAAAAAGTATA-TGGGG-------------CGGCTCCCGAACGCCTGTCACTAACACCACAAGC-------------------------------------T-----------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
T-----AAAGGACTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCCAAA-----------------ACACACTAATAGATGCATGTC----AA--AC--ACT---TACACTTA--CCCT----CAC------ACACAC-ACAC--ACAC----------ACACA----------CAAAGACAC--------------------------------------------------------------------------------------------------TAACTTTGTA--ATG-----GGATAAGGGG----GTC-AAATTGA----------------------------------------------------------------------------------ACGAT---------------------------AGATCTTGACACAGTTAACTCCCAGACAACCACACACACACAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------ACATACAAAAT-------------------------------------G-----------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
T-----TTGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTA----CG--GC--ACACA-CA----CACACACA------CAC-------------GC----------ACGCACACACTTATCCA----TGAGGCAGT------------------------TGCAGTTG------CAGCAGGCAGGAGGC--------------------------------------------------------AA-------------------GAGGCAG-GAGGGGCAGGAGTGGCAGGGAGGGAGA----------CG---GCAGA--------GACACAGACACCGACAAATGTACATTGT----ACGGC---------------------------GTACCT--------------------------------------------------------------TGTAGCTGACGTTCGTTTGGTGAA--------------------------------------TG-----CATCACACAGGGACAACA---A----------------------------AAGCAACAACAA---CAACAATCTGTGCAACAAC-------------------------------------T-----------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................................................................................................................................................................................................GC--ACACA-CA----CACACACA------CAC-------------G..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1020000000200
droPer2
A-----GAGAAAACA-----GCAAAAGAGGAATGAGGAAAGAGAAATGCGAAAAGCGAGA---------------AAACAAGAACAAAACACTTGACTTGTCATTTTTGACATATAAATGGCGAAACAAATCTT--TGGATATTGTTTTAAA--TGAAGCACACA-----------------------------------------------------------------------------CA---TGCACACA--TACA----CAC------ACACAC-A--CACACAC----------ACACACAAAAACCC------------------------------------------------------------------------------------------------------------AGACAGAGAGAGAGA-------------------GGAAG-AAGGAGAGAAAGAGAACGAGAATGAGA----------CAGAGACAGA---------------------------------------------------GAGACG-------------------------------------------AACATAGATAGACAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGAC-------------------------------------A-----------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
A-----AAAGGA-----------------------------------------------------CCCTGGCACAG------------------------GCCGAGTTTAAGCATGA-------------T--TTGTGCGTGTC---------------------TTTATGACACGGAACACATTCGCCACCAGATTCCCCTCTCCATACTCG---GTATCCTTCT-------------------------------------------------------------------------------------------------------------------------------GCTGCTTCTGCTTCTGATACTTTTCATCGGGGAAGGACGACACAGTTGCAGA--------TACGAGTAGATATGGAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGATGACAAGCCGCTCGTTTCGCTAACAA---G----------------------------CAAAGTATCCGCTACTGACACCGCC------AGCTGTCGCTCAAGCTTTCCTTCTTGTTCACCACCCTCTCTCCAAAAAAATGAAGCAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
T-----GAAG-----------------------------------------------------------------------------------------------------------------------------------------------------CACATA----------------------------------------------------------------------------------------CACACACA------CACACAC-------ACTC----------GCTTACACTCG---------------------------CAGCCAAGGGACAGTCCTGCGCAG------CAGCAGATACACTTCCA-----------------------GA-----------------------------------------------------------------------------------TACAGATACAC----AGACAGAGACGGAGATA--------------GG--CAGGCATCTGAAACGAGAGCAGGCTGC--------------------------TGTGGTTGGCT--------TACACACATGCACAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACAC-------------------------------------A----------------GSizeHit CountTotal NormTotal
No Reads
droKik1
G-----GAAGCAGCA-----GCAGCAACAGCAGCAGCAGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAG----------------------------------------------------------------------AAGCAGC-A-GCGCAGTAGCAGT-------------------------------------------------------------------TGCGCTCTGCAGCGACGTCA-----------------------------------------------------------------------------------------------------GTTTTGAGTACATAACAAATAAATGCTAAAATTTCACGAAATACCAAAAAACGCACACCCAA-------AAAT---G----------------------------CGCGCACACCAATGCAAACACA--C------AAATACAACACACACATACATACGCACGCGCCGCACTCACA-----------------SizeHit CountTotal NormTotal
No Reads
droFic1
T-----TAAAAGCCG-----GCAG----------------------------A--------AGGACCAAGAACCTG------------------------ACTGAGTTTAAGCATGA-------------T--TTGTGCGTGTC---------------------TTTATGACACCGAACAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
T-----GTTT-----------------------------------------------------------------------------------------------------------------------------------------------------CACACA----------------------------------------------------------------------------------------CACACACA------CACACAC-------ACAC----ACACACAC--ACACAC-----------------ACTCGCAGAAATAGAGGGGGGCGGGGA-------------------------AGTGGCTTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAAG-------------------------------------A-----------------SizeHit CountTotal NormTotal
No Reads
droRho1
G-----A--------------------------------------------------------------------------------------------------TTTGGAATGTGA-------------T--TTGGATATGGA--TTCGGATTTGGACCACACA--------------------C-ATGG-----------------GCAC-----TCGTGTTATGTG----TC--GCACA--CA-CA----CACACACA------CACAC--AC-----ACAC----------ACACACACACG----------C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----------------SizeHit CountTotal NormTotal
No Reads
droBia1
G-----T---------------------------------------------------------------------------------------------GCGTCCTCGGGGCATAATTTCCCAA--------T--TGCAGGCTCATGTGCC--GCACACACACA-----------------------------------------------------------------------------CA---------TACACACA------CACACACACACAC-A--CACACAC----------ACACACACACACAC------------------------------------------------------------------------------------------------------------ACACACACACACACA----------------------------------------------------------CACACACACACACA---------------------------------------------------CACACA-------------------------------------------CACACACACACACAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACAC-------------------------------------A-----------------SizeHit CountTotal NormTotal
No Reads
droTak1
A-----CACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA-CA----CACACACA------CAC----ACA---CACAC----------ACACACACACG----------TGTTGCAGG------------------------------------------------------------------------------------------AAAAATTCAGGGAAATGGGAAGCGGAAAAAGTGAGAAC----GGA-AAATGCA-------------------------------------ACAGA------------------------------------------------------------------------AA-------------------------------------------------------------------------------------------------------AACTAGCGACGC---------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
CAACGTTAAAAGCCA-----GCAG----------------------------A--------AGGACACGGAACCTG------------------------GCTGAGTTTAAGAATGA-------------T--TTGTGCGTGTC------TC-------------TTTATGACACGCAGCAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
T-----GACT-----------------------------------------------------------------------------------------------------------------------------------------------------CACACA----------------------------------------------------------------------------------------CACACACA------CACACAC-------ACAC----------ACACACACACGCATGCACGCTGTGT---------------GTGGGTGAGAG-------TGAG------TTTCTT-----------TG-------------------GACATGGAAGTGGAAATATTTCACGGCGA---------TGACCAGTAAACGAGGTAAAC-G-AAGGCGCAAAAGT-------------------------------------------------------------------CAATGCATCCGACACACACACACACACACACACA------------------------------------------------------------------------------------------------------------------------------------CATAGGCATACATTTCACACACACGTTC---G----------------------------CAGGGGCGC--------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
T-----GACT-----------------------------------------------------------------------------------------------------------------------------------------------------CACACA----------------------------------------------------------------------------------------CACACACA------CACACAC-------ACAC----------ACACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3515.0050000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATACATTTCACACACACGTT..........................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATACATTTCACACACACGT...........................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
................................................................................................................................................................................................................................................................................................................................................................................T-----------TG-------------------GACATGGAAGTGGAAATAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................CAC----------ACACACACACGCATGCAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACACACACACACACACA------------------------------------------------------------------------------------------------------------------------------------C....................................................................................................................................................20200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACACACACACACA------------------------------------------------------------------------------------------------------------------------------------CA...................................................................................................................................................18200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................CATGGAAGTGGAAATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................16200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................CAC----------ACACACACACGCATGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACACACACACA------------------------------------------------------------------------------------------------------------------------------------CATAGGC..............................................................................................................................................21100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACACACACACACACACACA.............................................................................................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................CAC----------ACACACACACGCATGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACACACACACACA------------------------------------------------------------------------------------------------------------------------------------CATAGG...............................................................................................................................................22140.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACACACACACACACACAC..............................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACACACACACA------------------------------------------------------------------------------------------------------------------------------------CATA.................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................CACACA----------------------------------------------------------------------------------------CACACACA------CACACAC-------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................CACACA----------------------------------------------------------------------------------------CACACACA------CACACAC-------ACAC----------ACACACACAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................35200.0510000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................CACACA------CACACAC-------ACAC----------ACACACACAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGACACACACACACACACA...............................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................CACACAC-------ACAC----------ACACACACACGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
C-----ACAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCACACCCACACCCA------CACAC-----------------------------ACACG----------CATCCCAATCACAGTCACAGCCAGGACAGGAGCCACAGCAGCAGCAGCAGCAGCTCAATGGCCACGG----------------------------------------------------------------------AGGAGGC-G-GAGGAGCAGGAGC-------------------------------------------------------------------TGCGGGATCAGGAGCAGGCGGACGATCACCTGCATCAGCATCAACAGGC---------------------GTCG--------------------CAGCA----------------------------------------GTATCTGCTGGCGGCGC--GCCACTACCACAGCAGCACGCCCAACACGCTCAGCA---G----------------------------CAGCAACACCAATCCCAGCACGCCCAGCAGCAAC-------------------------------------T-----------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGGGATCAGGAGCAGGCGGACGA..................................................................................................................................................................................................................................................................................................2511.00100000000000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGAGCAGGCGGACGATCACCT............................................................................................................................................................................................................................................................................................2411.00100000000000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAACAGGC---------------------GTCG--------------------CAGCA----------------------------------------GTATC...........................................................................................................................................................................2611.00100000001000000000
..............................................................................................................................................................................................................................................................................................................................................AGCCAGGACAGGAGCCACAGCAGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000001000000000
.........................................................................................................................................................................................................................................................................................................................................GTCACAGCCAGGACAGGAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000000100000
droSec2
C-----ACAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCGAAACACACACA------CAC----ACA---CACGC----------GCGCGCACACA----------AAGT---------------GCAAGGACAGGCCAAGAAGAAG------CAGCAG--------------------------------TACA--------AAAAAGGATAAGTGCAACAGCAAGCATAAGAAGTAAGCCA------------------------------------------------------------------------------------------------------------------GGCAACTGCAACAGCAACATTTGCTGCAAGTGCAGCCCCCACAGCCGTCGCCGCCGCC------------------------------------------------------------------------------AAGTTCAAAATC--AACGCCTGACAATGACAAAG---G----------------------------CAGCAGCAGAAGCAGCAACAGCAACAGCAACAAC-------------------------------------A-----------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCCCCCACAGCCGTCG.................................................................................................................................................................................................................................................2011.0011000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAAGCATAAGAAGTAAGCCA------------------------------------------------------------------------------------------------------------------G..................................................................................................................................................................................................................................................................................................2511.0010001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGCAGCAACAGCAACAG..............................................................2020.5010001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAAGCAGCAACAGCAACAGC.............................................................2220.5010100
...................................................................................................................................................................................................................................................................CA------CAC----ACA---CACGC----------GCGCGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2030.3311000
..................................................................................................................................................................................................................................................................ACA------CAC----ACA---CACGC----------GCGCGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2130.3310001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGAAGCAGCAAC......................................................................19200.2550050
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGAAGCAGCAACAG....................................................................21200.2041030
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGAAGCAGCAACAGCA..................................................................22200.1530030
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGAAGCAGCAACAGC...................................................................21200.1020020
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGAAGCAGCAACAGCA..................................................................20200.1020020
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGAAGCAGCAACAGCA..................................................................21200.1020020
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGAAGCAGCAACAGC...................................................................20200.0510010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGAAGCAGCAACAGC...................................................................22200.0510010
droYak3
C-----ACAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------CACACCCACACACAC-------------ACGC----------ACACGCACACG----------CATCCCAATCACAGTCTCAGCCAGGACAGGAGCCACAGCAG------CAGCAGCTCAATGGCCACGG----------------------------------------------------------------------AGGAGGC-G-GAGGAGCAGGAGC-------------------------------------------------------------------TGCGGGATCAGGAGCAGGCGGACGATCACCTGCATCAGCATCAGCAGGC---------------------GTCG--------------------CAGCA----------------------------------------GTATCTGCTGGCGGCGC--GCCATTACCACAGCAGCACGCCCAACACGCTCAGCA---G----------------------------CAGCAACACCAATCCCAGCACGCCCAGCAGCAAC-------------------------------------T-----------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................................................................................................................................................................................................................................................................................CCAGGACAGGAGCCACAGCAG------CAGCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-------------------------------------------------------------------TGCGGGATCAGGAGCAGGCGGA.....................................................................................................................................................................................................................................................................................................2311.00100100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGC-G-GAGGAGCAGGAGC-------------------------------------------------------------------TGCGGGATC..................................................................................................................................................................................................................................................................................................................2711.00100100000000
..............................................................................................................................................................................................................................................................................................................CACG----------CATCCCAATCACAGTCTCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-------------------------------------------------------------------TGCGGGATCAGGAGCAGGC........................................................................................................................................................................................................................................................................................................2011.00100010000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACACCAATCCCAGCACGCC.................................................................2111.00100100000000
............................................................................................................................................................................................................................................................................................................................CATCCCAATCACAGTCTCAGCCAGGACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000000000
..................................................................................................................................................................................................................................................................................................................................................................................TCAATGGCCACGG----------------------------------------------------------------------AGGAGGC-G-GAG........................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGGAGC-------------------------------------------------------------------TGCGGGATCAGGAGCAGGC........................................................................................................................................................................................................................................................................................................2811.00100100000000
............................................................................................................................................................................................................................................................................................................................................TCAGCCAGGACAGGAGCCAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGGAGC-------------------------------------------------------------------TGCGGGATCAGGAGCA...........................................................................................................................................................................................................................................................................................................2511.00100100000000
droEre2
C-----ACAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------CACACACA------CACGC-----------------------------ACACG----------CATCCCAATCACAGTCACAGCCAGGACAGGAGCCACAGCAG------CAGCAGCTCAATGGCCACGG----------------------------------------------------------------------AGGAGGC-G-GAGGAGCAGGAGC-------------------------------------------------------------------TGCGGGATCAGGAGCAGGCGGACGATCACCTGCATCAGCATCAGCAGGC---------------------GTCT--------------------CAGCA----------------------------------------GTATCTGCTGGCGGCGC--GCCACTATCACAGCAGCACGCCCAACACGCTCAGCA---G----------------------------CAGCAACACCAATCCCAGCACGCCCAGCAGCAAC-------------------------------------T-----------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCACAGCAGCACGCCCAACACGC...............................................................................................................................2511.0011000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGC-G-GAGGAGCAGGAGC-------------------------------------------------------------------TG.........................................................................................................................................................................................................................................................................................................................1911.0011000000
.........C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------CACACACA------CACGC-----------------------------ACAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000010

Generated: 05/18/2015 at 01:29 AM