ID:

dmo_183

 Coordinate:

scaffold_6482:591152-591227 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-18.1 -18.1 -18.0

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
Helitron-1_DVirRCHelitron+

Sense Strand Reads

GTCAAAGCACAATTAGATATAGAAGATTTAATATAAATATTGATAGATGTAATTACTTTAGAGAAGTCGTAATGCTATACTTTCCTTGGAGAAATGAGCACATAGACTTAGTTATGAGGGATTGCGAAACGTTTTGTTGTCAAAACCTTGAAACTAAAAATATGAATCGTAAATGT
***********************************............(((((((.(((((...(((((....((((....((((....))))....))))....))))).....))))))))))))...............*********************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body		 V041
embryo
..................................................AATTACTTTAGAGAAGTCGTAATGC..................................................................................................... 25 0 1 18.00 18 11 6 1 0
........................................................................................................GACTTAGTTATGAGGGATTGCGA................................................. 23 0 1 10.00 10 8 0 2 0
........................................................................................................GACTTAGTTATGAGGGATTGCGAAACG............................................. 27 0 1 8.00 8 7 0 1 0
........................................................................................................GACTTAGTTATGAGGGATTGCGAA................................................ 24 0 1 6.00 6 5 1 0 0
........................................................................................................GACTTAGTTATGAGGGATTGCG.................................................. 22 0 1 6.00 6 5 0 1 0
........................................................................................................GACTTAGTTATGAGGGATTGC................................................... 21 0 1 5.00 5 0 1 1 3
..................................................AATTACTTTAGAGAAGTCGTAATGCTA................................................................................................... 27 0 1 4.00 4 4 0 0 0
........................................................................................................GACTTAGTTATGAGGGATTGCGAAAC.............................................. 26 0 1 4.00 4 3 0 1 0
..................................................AATTACTTTAGAGAAGTCGTAAT....................................................................................................... 23 0 1 3.00 3 3 0 0 0
...........................................................................................................TTAGTTATGAGGGATTGCGAAACGT............................................ 25 0 1 2.00 2 2 0 0 0
........................................................................................................GACTTAGTTATGAGGGATTGCGAAA............................................... 25 0 1 2.00 2 2 0 0 0
.........................................................................................................ACTTAGTTATGAGGGATTGCGAAAC.............................................. 25 0 1 2.00 2 2 0 0 0
........................................................................................................GACATAGTTATGAGGGATTGCGATT............................................... 25 3 1 1.00 1 0 1 0 0
.....................................................................TAATGCTATACTTTCCTTGGA...................................................................................... 21 0 1 1.00 1 1 0 0 0
.........................................................................................................ACTTAGTTATGAGGGATTGCGAAACG............................................. 26 0 1 1.00 1 1 0 0 0
...................................................ATTACTTTAGAGAAGTCGTAATGCTA................................................................................................... 26 0 1 1.00 1 1 0 0 0
..................................................AATTACTTTAGAGAAGTCGTAATGCTAA.................................................................................................. 28 1 1 1.00 1 0 1 0 0
........................................................................................................GACTTAGTTATGAGGGATTGCGAAAA.............................................. 26 1 1 1.00 1 1 0 0 0
.TCAAAGCACAATTAGATATAGAAGATT.................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0
........................................................................................................GACTTAGTTATGAGGGATTG.................................................... 20 0 1 1.00 1 1 0 0 0
...........................................................................................................TTAGTTATGAGGGATTGCGAAACGTTA.......................................... 27 1 1 1.00 1 1 0 0 0
........................................................................................................GACTTAGTTTTGAGGGTTTGCG.................................................. 22 2 1 1.00 1 0 0 0 1
...................................................ATTACTTTAGAGAAGTCGTAATGC..................................................................................................... 24 0 1 1.00 1 1 0 0 0
..................................................AATTACTTTAGAGAAGTCGTAATGCTAT.................................................................................................. 28 0 1 1.00 1 1 0 0 0
..................................................AATTACTTTAGAGAAGTCGTAA........................................................................................................ 22 0 1 1.00 1 0 1 0 0
..................................................AATTACTTTAGAGAAGTCGTAATGCT.................................................................................................... 26 0 1 1.00 1 0 1 0 0
...........................................................................................................TTAGTTATGAGGGATTGCGA................................................. 20 0 1 1.00 1 0 0 1 0
........................................................................................................GGCTTAGTTATGAGGGATTGCA.................................................. 22 2 1 1.00 1 0 1 0 0
...........................................................................................................TTAGTTATGAGGGATTGCGAAACGTT........................................... 26 0 1 1.00 1 1 0 0 0
...........................................................................................................TTAGTTATGAGGGATTGCGAAACGTTT.......................................... 27 0 1 1.00 1 1 0 0 0
..................................................AATTACTTTACAGAAGTCGTAAT....................................................................................................... 23 1 1 1.00 1 1 0 0 0
.........................................................TTAGAGAAGTCGTAATGCTAT.................................................................................................. 21 0 1 1.00 1 1 0 0 0
........................................................................................................GACTTAGTTATAAGGGATTGCG.................................................. 22 1 1 1.00 1 1 0 0 0
..................................................ATTTACTTTAGAGAAGTCGTAATGC..................................................................................................... 25 1 1 1.00 1 0 1 0 0
..................................................AATTACTTTAGAGAAGTCGTAATG...................................................................................................... 24 0 1 1.00 1 1 0 0 0
.....................................................................TAATGCTAGACTTTCATTGAA...................................................................................... 21 3 13 0.08 1 0 0 0 1
....................................................................................................................AGGGAGGGCGAGACGTTTT......................................... 19 3 20 0.05 1 0 0 0 1

Anti-sense strand reads

CAGTTTCGTGTTAATCTATATCTTCTAAATTATATTTATAACTATCTACATTAATGAAATCTCTTCAGCATTACGATATGAAAGGAACCTCTTTACTCGTGTATCTGAATCAATACTCCCTAACGCTTTGCAAAACAACAGTTTTGGAACTTTGATTTTTATACTTAGCATTTACA
***********************************............(((((((.(((((...(((((....((((....((((....))))....))))....))))).....))))))))))))...............*********************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V041
embryo
 V110
male body
..................................TTTATAACTATCTACATTAATGAAAT.................................................................................................................... 26 0 1 137.00 137 51 83 2 1
..........................................................................................CTTTACTCGTGTATCTGAATCAAT.............................................................. 24 0 1 119.00 119 65 51 3 0
.......................................................................................CCTCTTTACTCGTGTATCTGAATCAAT.............................................................. 27 0 1 96.00 96 47 47 2 0
....TTCGTGTTAATCTATATCTTCTAAAT.................................................................................................................................................. 26 0 1 86.00 86 34 51 1 0
...................................TTATAACTATCTACATTAATGAAAT.................................................................................................................... 25 0 1 68.00 68 53 15 0 0
.........................................................................................TCTTTACTCGTGTATCTGAATCAAT.............................................................. 25 0 1 51.00 51 39 11 0 1
........................................................................................CTCTTTACTCGTGTATCTGAATCAAT.............................................................. 26 0 1 48.00 48 34 13 1 0
.................................................................................................................................................GGAACTTTGATTTTTATACTTAGCATT.... 27 0 1 24.00 24 23 1 0 0
.................................ATTTATAACTATCTACATTAATGAAAT.................................................................................................................... 27 0 1 24.00 24 23 0 1 0
......................................................................................ACCTCTTTACTCGTGTATCTGAATCAAT.............................................................. 28 0 1 23.00 23 18 5 0 0
..........................................................................................CTTTACTCGTGTATCTGAATCAATACT........................................................... 27 0 1 21.00 21 14 7 0 0
............................................................................................TTACTCGTGTATCTGAATCAATACT........................................................... 25 0 1 12.00 12 8 4 0 0
.....TCGTGTTAATCTATATCTTCTAAAT.................................................................................................................................................. 25 0 1 12.00 12 5 7 0 0
.....................................................................................AACCTCTTTACTCGTGTATCTGAATCAAT.............................................................. 29 0 1 11.00 11 11 0 0 0
CAGTTTCGTGTTAATCTATATCTTCT...................................................................................................................................................... 26 0 1 8.00 8 5 3 0 0
.......................................................................................CCTCTTTACTCGTGTATCTGAATCAA............................................................... 26 0 1 7.00 7 7 0 0 0
.................................................................................................................................................GGAACTTTGATTTTTATACTTAGCAT..... 26 0 1 7.00 7 7 0 0 0
................................................................................................................................................TGGAACTTTGATTTTTATACTTAGCATT.... 28 0 1 7.00 7 6 1 0 0
....CTCGTGTTAATCTATATCTTCTAAAT.................................................................................................................................................. 26 1 1 7.00 7 0 7 0 0
................................................................TCAGCATTACGATATGAAAGGAACCT...................................................................................... 26 0 1 7.00 7 4 3 0 0
.................................................................CAGCATTACGATATGAAAGGAACCT...................................................................................... 25 0 1 6.00 6 1 4 1 0
..................................CTTATAACTATCTACATTAATGAAAT.................................................................................................................... 26 1 1 6.00 6 0 6 0 0
.............................................................................................TACTCGTGTATCTGAATCAATACT........................................................... 24 0 1 6.00 6 3 3 0 0
....................................TATAACTATCTACATTAATGAAAT.................................................................................................................... 24 0 1 5.00 5 2 2 1 0
...................................TTATAACTATCTACATTAATGAAA..................................................................................................................... 24 0 1 5.00 5 5 0 0 0
.....................................................................................................................CCCTAACGCTTTGCAAAACAACAGT.................................. 25 0 1 5.00 5 4 1 0 0
.....................................ATAACTATCTACATTAATGAAAT.................................................................................................................... 23 0 1 5.00 5 5 0 0 0
.................................................................................................................................................GGAACTTTGATTTTTATACTTAGCATTT... 28 0 1 5.00 5 5 0 0 0
..........................................................................................CTTTACTCGTGTATCTGAATCAA............................................................... 23 0 1 5.00 5 5 0 0 0
.......................................................................................CCTCTTTACTCGTGTATCTGAATCAGT.............................................................. 27 1 1 5.00 5 0 5 0 0
..................................TTTATAACTATCTACATTAATGAAGT.................................................................................................................... 26 1 1 5.00 5 0 5 0 0
...........................................................................................TTTACTCGTGTATCTGAATCAAT.............................................................. 23 0 1 4.00 4 2 2 0 0
.....CCGTGTTAATCTATATCTTCTAAAT.................................................................................................................................................. 25 1 1 4.00 4 0 4 0 0
...............................................................................................................................................TTGGAACTTTGATTTTTATACTTAGCATT.... 29 0 1 4.00 4 3 1 0 0
....TTCGTGTTAATCTATATCTTC....................................................................................................................................................... 21 0 1 4.00 4 0 4 0 0
......CGTGTTAATCTATATCTTCTAAAT.................................................................................................................................................. 24 0 1 4.00 4 2 2 0 0
........................................................................................CTCTTTACTCGCGTATCTGAATCAAT.............................................................. 26 1 2 3.50 7 4 0 0 3
.................................................................CAGCATTACGATATGAAAGGAACCTCTT................................................................................... 28 0 1 3.00 3 3 0 0 0
..............................................................................................ACTCGTGTATCTGAATCAAT.............................................................. 20 0 1 3.00 3 3 0 0 0
..........................................................................................CTTTACTCGTGTATCTGAATCAGT.............................................................. 24 1 1 3.00 3 0 3 0 0
..................................TTTATAACTATCTACATTAATGAAATC................................................................................................................... 27 0 1 3.00 3 0 3 0 0
.............................................................................................TACTCGTGTATCTGAATCAATACTCCCT....................................................... 28 0 1 3.00 3 1 2 0 0
...................................TTATAACTATCTACATTAATGAAATA................................................................................................................... 26 1 1 3.00 3 3 0 0 0
.....................................................................................AACCTCTTTACTCGTGTATCTGAATCAA............................................................... 28 0 1 3.00 3 3 0 0 0
...................................................TAATGAAATCTCTTCAGCATTACGATAT................................................................................................. 28 0 1 3.00 3 3 0 0 0
................................................................................................................................................TGGAACTTTGATTTTTATACTTAGCATTT... 29 0 1 3.00 3 3 0 0 0
....TTCGTGTTAATCTATATCTTCTTAAT.................................................................................................................................................. 26 1 1 3.00 3 0 3 0 0
.AGTTTCGTGTTAATCTATATCTTCTAAAT.................................................................................................................................................. 29 0 1 2.00 2 2 0 0 0
.......GTGTTAATCTATATCTTCTAAATTAT............................................................................................................................................... 26 0 1 2.00 2 2 0 0 0
.....................................................................................................................CCCTAACGCTTTGCAAAACAACAGTTT................................ 27 0 1 2.00 2 2 0 0 0
....CTCGTGTTAATCTATATCTTCTAAATT................................................................................................................................................. 27 1 1 2.00 2 0 2 0 0
............................................................................................TTACTCGTGTATCTGAATCAATACTCCCT....................................................... 29 0 1 2.00 2 1 1 0 0
..................................TTTATAACTATCTACATTAA.......................................................................................................................... 20 0 1 2.00 2 0 2 0 0
.................................................................CAGCATTACGATATGAAAGGAACCTCT.................................................................................... 27 0 1 2.00 2 2 0 0 0
.....................................................................................................................CCCTAACGCTTTGCAAAACAACAGTT................................. 26 0 1 2.00 2 1 1 0 0
....................................................................................................................................................ACTTTGATTTTTATACTTAGCAT..... 23 0 1 2.00 2 2 0 0 0
................................................................TCAGCATTACGATATGAAAGGAACC....................................................................................... 25 0 1 2.00 2 2 0 0 0
....TGCGTGTTAATCTATATCTTCTAAAT.................................................................................................................................................. 26 1 1 2.00 2 0 2 0 0
.AGTTTCGTGTTAATCTATATCTTCT...................................................................................................................................................... 25 0 1 2.00 2 2 0 0 0
......................................................................................................................CCTAACGCTTTGCAAAACAACAGTT................................. 25 0 1 2.00 2 1 1 0 0
....................................................................................................................TCCCTAACGCTTTGCAAAACAACAGTTT................................ 28 0 1 2.00 2 1 1 0 0
CAGTTTCGTGTTAATCTATAT........................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0
..................................TTTATAACTATCTACATTAATGAAA..................................................................................................................... 25 0 1 2.00 2 2 0 0 0
...................................................................................................................CTCCCTAACGCTTTGCAAAACAACAGTT................................. 28 0 1 2.00 2 2 0 0 0
.....................................................................................................................CCCTAACGCTTTGCAAAACAACAGTTTT............................... 28 0 1 2.00 2 1 1 0 0
.....................................................ATGAAATCTCTTCAGCATTACGATAT................................................................................................. 26 0 1 2.00 2 2 0 0 0
...................................CTATAACTATCTACATTAATGAAAT.................................................................................................................... 25 1 1 2.00 2 0 2 0 0
..........................................................................................CTTTACTCGTGTATCTGAATTAAT.............................................................. 24 1 1 2.00 2 0 2 0 0
..............................................................CTTCAGCATTACGATATGAAAGGAACCT...................................................................................... 28 0 1 2.00 2 0 2 0 0
.......................................................................................................................CTAACGCTTTGCAAAACAACAGTT................................. 24 0 2 1.50 3 2 1 0 0
.......................................................................................CCTCTTTACTCATGTATCTGTATC................................................................. 24 2 1 1.00 1 0 1 0 0
.................................................................................................................................................GGAACTTTGATTTTTATACTTAGCA...... 25 0 1 1.00 1 1 0 0 0
..GTTTCGTGTTAATCTATATCTTCTAAA................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0
....................................................AATGAAATCTCTTCAGCATTACGATAT................................................................................................. 27 0 1 1.00 1 1 0 0 0
.............................................................TCTTCAGCATTACGATATGAAATG........................................................................................... 24 1 1 1.00 1 0 1 0 0
.......................................................................................CCTCTTCACTCGTGTATCTGAATCAAT.............................................................. 27 1 1 1.00 1 0 1 0 0
.......................................................................................CCTCTTTACTCGTGTATCTGAATCAAC.............................................................. 27 1 1 1.00 1 0 1 0 0
............................................................................................TTACTCGTGTATCTGAATCAAT.............................................................. 22 0 1 1.00 1 0 1 0 0
.....................................................................................................................................................CTTTGATTTTTATACTTAGCA...... 21 0 1 1.00 1 0 1 0 0
............................................................CTCTTCAGCATTACGATATGAAATG........................................................................................... 25 1 1 1.00 1 0 1 0 0
...................................................................................................................CTCCCTAACGCTTTGCAAAACAACAGT.................................. 27 0 1 1.00 1 1 0 0 0
...................................TTATAACTATCTACATTAACGAAAT.................................................................................................................... 25 1 1 1.00 1 0 1 0 0
...............................................................................................CTCGTGTATCTGAATCAATACT........................................................... 22 0 1 1.00 1 0 1 0 0
.....CCGTGTTAATCTATATCTTC....................................................................................................................................................... 20 1 1 1.00 1 0 1 0 0
......................................................................................ACCTCTTTACTCGTGTATCTGAATCAA............................................................... 27 0 1 1.00 1 1 0 0 0
.................................................................................AAGGAACCTCTTTACTCGTGTATCTGAAT.................................................................. 29 0 1 1.00 1 1 0 0 0
...................................TTATAACTATCTACATTAA.......................................................................................................................... 19 0 1 1.00 1 1 0 0 0
...................................TTATAACTATCTACCTTAATGAAAT.................................................................................................................... 25 1 1 1.00 1 0 1 0 0
.....................................................................................................................CCCTAACGCTTTGCAAAACAACAG................................... 24 0 1 1.00 1 0 1 0 0
..........................................................................................CTTTACTCGTTTATCTGAATCAATACT........................................................... 27 1 1 1.00 1 0 1 0 0
...........................................................................................TTTACTCGTGTATCTGAATCAATA............................................................. 24 0 1 1.00 1 1 0 0 0
............................................................CTCTTCAGCATTACGATATGAAAGG........................................................................................... 25 0 1 1.00 1 0 1 0 0
........................................................................................CTCTTTACTTGTGTATCTGAATCAAT.............................................................. 26 1 1 1.00 1 1 0 0 0
....TTCGTGTTAATCTATATCTTCTATATT................................................................................................................................................. 27 1 1 1.00 1 0 1 0 0
..................................TTTATAACTATATAAATTAATGAAAT.................................................................................................................... 26 2 1 1.00 1 0 1 0 0
..................................TTTATAACTATCTACATTAATGTAAT.................................................................................................................... 26 1 1 1.00 1 0 1 0 0
..................................TTTATAACTATCTACATT............................................................................................................................ 18 0 1 1.00 1 1 0 0 0
.......................................................................................CCTCTTTACTCTTGTATCTGAATCAAT.............................................................. 27 1 1 1.00 1 0 1 0 0
.....TCGTGTTAATCTATATCTTCTAAATT................................................................................................................................................. 26 0 1 1.00 1 0 1 0 0
..................................TTTATAACTATCTACATCCATGAAAT.................................................................................................................... 26 2 1 1.00 1 0 1 0 0
.................................................................................................................................................GTAACTTTGATTTTTATACTTAGCAT..... 26 1 1 1.00 1 0 1 0 0
............................................................................................CTACTCGTGTATCTGAATCAATACT........................................................... 25 1 1 1.00 1 0 1 0 0
..AAATCGTGTTAATCTATATCTTCTAAAT.................................................................................................................................................. 28 3 1 1.00 1 1 0 0 0
........................................................................................................CTGAATCAATACTCCCTAACGCTTTGCA............................................ 28 0 1 1.00 1 0 1 0 0
....TTCGTGTTAATCTATATCTGC....................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0
..................................TTTATAACTATCTACGTTAATGAAAT.................................................................................................................... 26 1 1 1.00 1 1 0 0 0
.....................................ATAACTATCTACATTAATGAAATCTCTT............................................................................................................... 28 0 1 1.00 1 1 0 0 0
....TTCGTGTTAATCTATATCTT........................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0
..................................................................................................................................................GAACTTTGATTTTTATACTTAGCATT.... 26 0 1 1.00 1 0 1 0 0
......................................................................................ACCTCTTTACTCGTGTGTCTGAATCAAT.............................................................. 28 1 1 1.00 1 1 0 0 0
CCTTTTCGTGTTAATCTATGTCTT........................................................................................................................................................ 24 3 1 1.00 1 0 0 1 0
....TTCGTGTTAATCTATATCTTCTAATT.................................................................................................................................................. 26 1 1 1.00 1 0 1 0 0
....TTCGTGTTAATCTATATCTTCTGAAT.................................................................................................................................................. 26 1 1 1.00 1 1 0 0 0
..................................TTTATAACTATCTACATTA........................................................................................................................... 19 0 1 1.00 1 0 1 0 0
....TTCGTGTTAATCTATATCTTCCAAAT.................................................................................................................................................. 26 1 1 1.00 1 0 1 0 0
.............................................................................................TACTCGTGTATCTGAATCAATACTCC......................................................... 26 0 1 1.00 1 1 0 0 0
....TTCGTGTTAATCTATATCTTCTAAA................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0
..................................TTTATAACTATCTACATCAA.......................................................................................................................... 20 1 1 1.00 1 0 1 0 0
..................................................................................................................ACTCCCTAACGCTTTGCAAAACAACAGT.................................. 28 0 1 1.00 1 1 0 0 0
.........................................................................................TCTTTACTCGTGTATCTGAATCAATACT........................................................... 28 0 1 1.00 1 1 0 0 0
.....................................................................................AACCTCTCTACTCGTGTATCTGAATCAAT.............................................................. 29 1 1 1.00 1 1 0 0 0
.................................CTTTATAACTATCTACATTAATGAAAT.................................................................................................................... 27 1 1 1.00 1 1 0 0 0
.....................................................................................................................CCCTAACGCTTTGCAAAACAACAGGT................................. 26 1 1 1.00 1 0 1 0 0
....TTCGTGTTAATCTATATCTTCTAAGT.................................................................................................................................................. 26 1 1 1.00 1 0 1 0 0
....TACGTGTTAATCTATATCTTCTAAAT.................................................................................................................................................. 26 1 1 1.00 1 0 1 0 0
.....................................................................................AACCTCTTTACTCGTGTGTCTGAATCAAT.............................................................. 29 1 1 1.00 1 1 0 0 0
.......................................................................................CCTCTTTACTCGTGTATCTGAATCAATC............................................................. 28 1 1 1.00 1 0 1 0 0
........................................................................................CTCTTTACTCGTGTATCTGAATCAA............................................................... 25 0 1 1.00 1 1 0 0 0
..................................................................AGCATTACGATATGAAAGGAACCTCTT................................................................................... 27 0 1 1.00 1 1 0 0 0
............................................................CTCTTCAGCATTACGATATGAAAG............................................................................................ 24 0 1 1.00 1 0 1 0 0
..........................................................................................CTTTACTCGTGTATCTGAATCAAC.............................................................. 24 1 1 1.00 1 0 1 0 0
........................................................................................CTCTTTACTCGTGAATCTGAATCAAT.............................................................. 26 1 1 1.00 1 0 1 0 0
.................................ATTTATAACTATCTACATTAA.......................................................................................................................... 21 0 1 1.00 1 1 0 0 0
CAGTTTCGTGTTAATCTATATCTTC....................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0
..........................................................................................CTTTACTCGTGTATCTGAATCAATCT............................................................ 26 2 1 1.00 1 0 1 0 0
..................................TTTATAACTATCTACATTAATGAA...................................................................................................................... 24 0 1 1.00 1 0 1 0 0
..........................................................................................CTTTACTCGTGTATCTGAA................................................................... 19 0 1 1.00 1 0 0 1 0
.......................................................................................CCTCTTTACTCGTGTATCTGAATCGAT.............................................................. 27 1 1 1.00 1 0 1 0 0
..................................CTTATAACTATCTACATTAATGAAATC................................................................................................................... 27 1 1 1.00 1 0 1 0 0
............................................................................................TTACTCGTGTATCTGAATCAATAC............................................................ 24 0 1 1.00 1 1 0 0 0
.................................................................................................CGTGTATCTGAATCAATACT........................................................... 20 0 1 1.00 1 1 0 0 0
......................................................................................................ATCTGAATCAATACTCCCTAACGCT................................................. 25 0 1 1.00 1 1 0 0 0
.......................................................................................CCTCTTTACTCGTGTATCTGAATTAAT.............................................................. 27 1 1 1.00 1 0 1 0 0
............................................................................................TTACTCGTGTATCTGAATCAATACTC.......................................................... 26 0 1 1.00 1 1 0 0 0
................................................................................................................ATACTCCCTAACGCTTTGCAAAACAA...................................... 26 0 1 1.00 1 0 1 0 0
.............................................CTACATTAATGAAATCTCTTCAGCAT......................................................................................................... 26 0 1 1.00 1 1 0 0 0
...................................................................................................................CTCCCTAACGCTTTGCAAAAC........................................ 21 0 1 1.00 1 1 0 0 0
..................................TTGATAACTATCTACATTAATGAAAT.................................................................................................................... 26 1 1 1.00 1 0 1 0 0
.......................................................................................CCTCTTTACTCGTGTATCT...................................................................... 19 0 1 1.00 1 0 1 0 0
...............................................................................................................................................TTGGAACTTTGATTTTTATACTTAGCAT..... 28 0 1 1.00 1 0 1 0 0
..........................................................................................CTTTACTCGTGTATCTGAATCAATACTC.......................................................... 28 0 1 1.00 1 1 0 0 0
.....................................ATAACTATCTACATTAATGAAATCT.................................................................................................................. 25 0 1 1.00 1 1 0 0 0
..................................TTTATAACTATCTACACTAATGAAAT.................................................................................................................... 26 1 1 1.00 1 0 1 0 0
.................................................................................................................AACTCCCTAACGCTTTGCAAAACA....................................... 24 1 1 1.00 1 1 0 0 0
..........................................................................................CTTTACTCGTGTATCTGAATCAATC............................................................. 25 1 1 1.00 1 0 1 0 0
....TTCGTGTTAATCTATATCTTCTAAATT................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0
...................................................TAATGAAATCTCTTCAGCA.......................................................................................................... 19 0 1 1.00 1 1 0 0 0
...CATCGTGTTAATCTATATCTTCTAAAGT................................................................................................................................................. 28 3 1 1.00 1 0 1 0 0
...............................................................................................CTCGTGTATCTGAATCAAT.............................................................. 19 0 1 1.00 1 1 0 0 0
.................................ATTTATAACTATCTACATTAATGAAA..................................................................................................................... 26 0 1 1.00 1 1 0 0 0
.....GCGTGTTAATCTATATCTTCTAAAT.................................................................................................................................................. 25 1 1 1.00 1 0 1 0 0
......................................................................................ACCTCTTTACTCGTGTATCTGAATCAGT.............................................................. 28 1 1 1.00 1 0 1 0 0
...TTTCGTGTTAATCTATAT........................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0
CAGTTTCGTGTTAATCTATATCTT........................................................................................................................................................ 24 0 1 1.00 1 0 0 0 1
..........................................................................................CTTTACTCGTGTATCTGAATCATT.............................................................. 24 1 1 1.00 1 0 1 0 0
.....................................................................................................................................AACAACAGTTTTGGAACTTTGATTT.................. 25 0 1 1.00 1 1 0 0 0
.......................................................................................................TCTGAATCAATACTCCCTAACGCTTTG.............................................. 27 0 1 1.00 1 1 0 0 0
..................................TTTATAACTATCTACATTAATGAAATCTA................................................................................................................. 29 1 1 1.00 1 0 1 0 0
..................................TTTATAACTATCTGCATTAATGAAA..................................................................................................................... 25 1 1 1.00 1 1 0 0 0
..GTTTCGTGTTAATCTATATCTTCTAAAT.................................................................................................................................................. 28 0 1 1.00 1 1 0 0 0
...TTTCGTGTTAATCTATATCTTCT...................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0
.....TCGTGTTAATCTATATCTT........................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0
....CTCGTGTTAATCTATATCTTCTTAAT.................................................................................................................................................. 26 2 1 1.00 1 0 1 0 0
.....TCGTGTTAATCTATATCTTC....................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0
.........................................................................................TCTTTACTCGTGTATCTGACTCAAT.............................................................. 25 1 1 1.00 1 0 0 1 0
....................................................................................................................CCCCTAACGCTTTGCAAAACAACATT.................................. 26 2 1 1.00 1 0 1 0 0
...TTTCGTGTTAATCTATATCTTCTAAAT.................................................................................................................................................. 27 0 1 1.00 1 0 1 0 0
...............................................................................................................................TTGCAAAACAACAGTTTTGGAACTTT....................... 26 0 1 1.00 1 1 0 0 0
.........................................................................................CCTTTACTCGTGTATCTGAATCAAT.............................................................. 25 1 1 1.00 1 0 1 0 0
................................................................CCAGCATTACGATATGAAAGGAACCTCTT................................................................................... 29 1 1 1.00 1 0 1 0 0
.........................................................................................TCTTTACTCGTGTATCTGAATCATT.............................................................. 25 1 1 1.00 1 0 1 0 0
.........................................................................................TCTTTACTCGTGTATCTGAATCAA............................................................... 24 0 1 1.00 1 1 0 0 0
.......................................................................................................................CTAACGCTTTTCAAAACAACAGTT................................. 24 1 2 0.50 1 0 1 0 0
.......................................................................................................................CTAACGCTTTGCAAAACAACAGGT................................. 24 1 2 0.50 1 0 1 0 0
.........................................................................................TCTTTACTCGAGTATCTGAATTAAT.............................................................. 25 2 2 0.50 1 0 1 0 0
........................................................................................TTCTTTACTCGTTTATCAGAATCAAT.............................................................. 26 3 2 0.50 1 0 0 1 0
.......................................................................................................................CTAACGCTTTGCAAAACAACAGTTTT............................... 26 0 2 0.50 1 1 0 0 0
.......................................................................................................................CTAACGCTTTGCAAAACAACAGTTT................................ 25 0 2 0.50 1 1 0 0 0
.......................................................................................CCTCTTTACTCGCGTATCTGAATCAAT.............................................................. 27 1 2 0.50 1 1 0 0 0
......................................................................................CCCTCTTTACTCGCGTATCTGAATCAAT.............................................................. 28 2 2 0.50 1 1 0 0 0
......CGTTTTAATCTATATCTTCTAAATTATA.............................................................................................................................................. 28 1 2 0.50 1 1 0 0 0
...................................TTTATACTATCTACATTAATGAAAT.................................................................................................................... 25 3 2 0.50 1 0 1 0 0
.........................................................................................................................CCCGCTTTGCAAAACAACAGTT................................. 22 2 2 0.50 1 1 0 0 0
.....ACGTCTTAATCTATATCTTCTAAATT................................................................................................................................................. 26 2 2 0.50 1 0 1 0 0
..GGTTCGTGTTAATCTATATCTTCTAAAT.................................................................................................................................................. 28 1 2 0.50 1 1 0 0 0
....TTCGTGTTAATCTATATCTTCTACAT.................................................................................................................................................. 26 1 2 0.50 1 0 1 0 0
.....................................................................................CGCATCTTTACTCGTGTATCTGAATCAAT.............................................................. 29 3 2 0.50 1 1 0 0 0
.TGTTTCGTATTAATCTATAT........................................................................................................................................................... 20 2 8 0.13 1 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6482:591102-591277 + dmo_183 GTCAAAGC---ACAATTAGATATAGAAGATTT--------AATATAAATATTGATAGATGTAATTACTTTAGAGAAGTCGTAATGCTATACTTTCCTTGGAGAAATGAGCACATAGACTTA-GTTATGAGGGATTGCGAAACGTTTTGTTGTCAAAACCTTGAAA-CTAAAAATATGAATC-----------GT------AAATGT---
droVir3 scaffold_12108:3884-4076 - CTCCTATT---ATAATTAGGTATAGGAGATTT--------AATATTAATACTGATAGGAGCAATTATTTTCGAGAATTAGTTATGTTGTATGTCCCATGGAGGGATGAAAACGTAGAACTA-GTAGCAAGAGACTGCGAATCGTTTTGCGGCCAGAATCATGAGT-TAATTGAGAGCAATCGCAGGAAATACAATAGCTTAAATGA---
droGri2 scaffold_15203:1022754-1022881 + GC-----------------------------------------------------------AACTCTTTTCGCTAGCTAGTTATGTTATATGTTCCGTGGAAATATGAGGATTTGGAATTA-ATCACGCGGGATTGCGAACTTTTATGCAGCTAAACTCTAGACA-TAATTGAAACCAATC-----------GAA------GAAAA---
droWil2 scf2_1100000000229:3450-3627 + GGCCTTGC---ACAATCAGGTATAGGAAATAT--------AATATTAACACTGATAGGCAGAATTACTTTAGGGAATTAGTTATGTTGTATTTTCCATGGAGGGACGAGCAAATTGAATTA-GTTCAGAGAAATTGTGAGGAGTTTTACAATGAACATGAGGAAA-TTATTAGGGCCGGGT---------TCATC------AAATA---
dp5 Unknown_singleton_871:14267-14444 + AGCCGTCC---ATTTTAAAATATATGAGGTTT--------AATATAAATACAGATAGGTCAAACTATTTTAGAGCATTAGCTATGCTGTTTTATCCGTGGAGAGATGAAGAGAAAGATTTA-GTGAGCGTAAATTGCGAGGATCTTTATAATAATCATCAGGAGT-TGGTAAATTCAAATT---------TCCAA------AAATT---
droPer2 scaffold_111:65451-65628 + AGCCGTCC---ATTTTAAAATATATGAGGTTT--------AATATAAATACAGATAGGTCAAACTATTTTAGAGCATTAGCTATGCTGTTTTATCCGTGGAGAGATGAAGAGAAAGATTTA-GTGAGCGTAAATTGCGAGGATCTTTATAATAATCATCAGGAGT-TGGTAAATTCAAATT---------TCCAA------AAATT---
droAna3 scaffold_8683:11559-11751 - ATCCCCTG---ATTCTTAGATGGGTTCGCTTT--------AGCATTAACTATTCACCATCGGATTATTTCCGAGAGCATTTAATGCTCTTCTATCCTTGGCGAAATTAAGAAGCTGAACTT-CTTTCCAACGACGTTGAAAACACATTTAGAACTAATCATGAAT-CTATTAGGATCATGAAAAGAAACTATGATGTGTTTGATGA---
droBip1 scf7180000396421:4531-4726 + GGCATCCCCTGATTCTAAGGTGGGTTCGCTTT--------AGCATTAACTCTTCACCTTCCGATTATTTCCGAGAGCATTTAATGCTCTTCTATCCTTGGCGAAATGAAGAAGCTGAACTT-CTTTCCAACGACATTGAAGACACATTCCGAGTAAACCATGAAG-CCATTAAGGACAAAAAAAGGAACTATGATGTGTTTGATGA---
droKik1 scf7180000302543:57128-57324 + AGCATGCCTTAATTCTTAGATGGGTTCGCTTT--------AGCATAAACTCTTCCCCTTCTGATTATTTCAGAGAGCACGTAATGCTTTTCTTCCCATGGAGAAATGAAGAGACTGAACTT-CTTTCGAATGACAATGAAATGACATTCAGAAATAATCATGAAATTCATTAAGCGCAACAAAGAGCAATATGATGTGTTTGATGA---
droFic1 scf7180000453728:7712-7883 - AGCATGCCCTAATCCTCCGATGGGTCCGATTT--------AGCTTAAATTTTTCCCCATCCGACTATTTTCGAGAGCACGTAATGCTTTTCTTTCCGTGGAGAAATGAAGATACTGAACTC-ATATCAAACGATAACGAGAGCACCTTCAGAAACAACTATGAGC-TAATTAAACGCAAC------------------------AA---
droEle1 scf7180000490686:10028-10174 - ATTT---------------------------------------------------------GAATATACTAGAGAGCATGTAATGCTTTTCTTCCCGTGGAGGAGTGAGGAAAGGGACCTA-ATTTCAAATGATAATGAAGGAACATTCGGAAATAATTTTGAAA-TAATCAAGGCCAACAAAGAGCAATATGATGTTTTTGATGA---
droRho1 scf7180000764099:577-760 + AGCCAAGT---ATCATTAGGTATAGCCCCTTT--------AATATTAATTCTGATAGGCCCAACTATTTTAGAGCATTAGTTATGCTATATTCTCCATGGAGAGATGAACAGGTAGAATTG-TTTCAGAGAAATTGTGAGGAGTTTTATTATGAGCACGAGGAGG-CTATTAAAGCCAACT---------TTGATAGGTATAATGC---
droBia1 scf7180000301229:25175-25343 + GGCCCAGT---ATTAATAGGTATAGCCCGTTC--------AATATTAACACAGATAAGTGGAATTATTTAAGAGCATTAGTTATGCTTTATTCTCCATGGAGAGACGAACCGATAGAATTA-ATATTCAGAAATTGTGACGAGTTTTACCAAGTAAATGAGGTGG-CTATTAAAGCCAATT---------T------------------
droTak1 scf7180000410943:10472-10655 - AGACGAGT---ATCATTAGGTATAGCCCCTTT--------AATATTAATTCTGATAGGCCCAACTATTTTAGAGTATTAGTTATGCTTTATTCTCCATGGAGAGATGAACAGGTAGAATTG-TTTCAGAGAAATTGTGAGGAGTTTTATCATGAGCACGAGGAGG-CTATTAAAGCCAACT---------TTGATTGGTATAATGT---
droEug1 scf7180000405794:2217-2393 + AGAAGAGT---ATAATTAGATATAGTCCTTTT--------AATGTAAACACAGAAAGGTCAAATTATTTCAGATCATTTGTTATGTTCTATGCTCCTTGGAGAAATGAGCAGGTAGAACTA-ATGGAAATAAATTGCGAGTAGTATTATACTCTTAATGAAGAGG-CTATTAAAGCCAATT---------TTGAA-------ACGT---
dm3 chr3L:23630458-23630615 - GT---------ATTATTATGTATAGTTCATTC--------AATATTAATACAGATAGGATAAACTATTTTAGATCTTTAGTATTGCTCTATTCTCCGTGGAGAAACGACCATCTAAAGTTTCATTCAACGAAAGTGTAAAGATTTTGACAGTGAGAATGAAAAGT-T---TAAAGCTA---------------------------T---
droSim2 3l:23063475-23063611 - A----------------------------TTT--------CATATTAATACAGAGAGGATAAACTATTTTAGATCATTAGTAATGCTCTATTCTCCGTGGTGAAATGAACAGGAAAAGTTT-ATTCA-CGAAATTGTAAAGATTTTTACAAGGAGAAT----------------------T---------TTGAAAAGTATAATGT---
droSec2 scaffold_51:127740-127876 - A----------------------------TTT--------AATATTAATACAGAGAGGATAAACTATTTTAGATCATTAGTAATGCTCTATTCTCTGTGGTGAAATGAACAGGAAAAGTTT-ATTCA-CGAAATTGTAAAGATTTTTACAAGGAGAAT----------------------T---------TTGAAAAGTATAATGT---
droYak3 v2_chrUn_299:92350-92533 + GGGCTAGT---ATTATTAGGTATAGGAAATTT--------AATATTAATACAGATAGGACTAACTATTTTAGAACACTAGTAATGCTCTTTTCTCCGTGGAGAAACGAACAGGTAGATTTG-ATTCAAAGAAATTGCGAGGAATTTTACAATGAGAATGAGGAGG-CTATTAAAGCCAACT---------TTGAAAAGTATAATGC---
droEre2 scaffold_4784:24247579-24247747 - AGAGAAT---------TAAATAAGGCTAGTATTATACGTTAAAA----------------TTATTATTGTAGATAATTAGTAACGCTGTATTCTCCGAGGAGAAACGAGCCGGTAGAGTTA-ATTCAGGGAAATAGTGAAGAATTTTGCAATGAGAATGAGGAGG-CTA----AGGCAAGT---------TCGAAAAGTAAATTGCCAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
GTCAAAGC---ACAATTAGATATAGAAGATTT--------AATATAAATATTGATAGATGTAATTACTTTAGAGAAGTCGTAATGCTATACTTTCCTTGGAGAAATGAGCACATAGACTTA-GTTATGAGGGATTGCGAAACGTTTTGTTGTCAAAACCTTGAAA-CTAAAAATATGAATC-----------GT------AAATGT---SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............................................................AATTACTTTAGAGAAGTCGTAATGC...........................................................................................................................25118.00181100061
...................................................................................................................GACTTA-GTTATGAGGGATTGCGA......................................................................23110.0010800002
...................................................................................................................GACTTA-GTTATGAGGGATTGCGAAACG..................................................................2718.008700001
...................................................................................................................GACTTA-GTTATGAGGGATTGCGAA.....................................................................2416.006500010
...................................................................................................................GACTTA-GTTATGAGGGATTGCG.......................................................................2216.006500001
...................................................................................................................GACTTA-GTTATGAGGGATTGC........................................................................2115.005030011
.............................................................AATTACTTTAGAGAAGTCGTAATGCTA.........................................................................................................................2714.004400000
...................................................................................................................GACTTA-GTTATGAGGGATTGCGAAAC...................................................................2614.004300001
.............................................................AATTACTTTAGAGAAGTCGTAAT.............................................................................................................................2313.003300000
......................................................................................................................TTA-GTTATGAGGGATTGCGAAACGT.................................................................2512.002200000
...................................................................................................................GACTTA-GTTATGAGGGATTGCGAAA....................................................................2512.002200000
....................................................................................................................ACTTA-GTTATGAGGGATTGCGAAAC...................................................................2512.002200000
................................................................................TAATGCTATACTTTCCTTGGA............................................................................................................2111.001100000
....................................................................................................................ACTTA-GTTATGAGGGATTGCGAAACG..................................................................2611.001100000
..............................................................ATTACTTTAGAGAAGTCGTAATGCTA.........................................................................................................................2611.001100000
.............................................................AATTACTTTAGAGAAGTCGTAATGCTAA........................................................................................................................2811.001000010
...................................................................................................................GACTTA-GTTATGAGGGATTGCGAAAA...................................................................2611.001100000
.TCAAAGC---ACAATTAGATATAGAAGATT..................................................................................................................................................................................2711.001100000
...................................................................................................................GACTTA-GTTATGAGGGATTG.........................................................................2011.001100000
......................................................................................................................TTA-GTTATGAGGGATTGCGAAACGTTA...............................................................2711.001100000
..............................................................ATTACTTTAGAGAAGTCGTAATGC...........................................................................................................................2411.001100000
.............................................................AATTACTTTAGAGAAGTCGTAATGCTAT........................................................................................................................2811.001100000
.............................................................AATTACTTTAGAGAAGTCGTAA..............................................................................................................................2211.001000010
.............................................................AATTACTTTAGAGAAGTCGTAATGCT..........................................................................................................................2611.001000010
......................................................................................................................TTA-GTTATGAGGGATTGCGA......................................................................2011.001000001
......................................................................................................................TTA-GTTATGAGGGATTGCGAAACGTT................................................................2611.001100000
......................................................................................................................TTA-GTTATGAGGGATTGCGAAACGTTT...............................................................2711.001100000
....................................................................TTAGAGAAGTCGTAATGCTAT........................................................................................................................2111.001100000
.............................................................AATTACTTTAGAGAAGTCGTAATG............................................................................................................................2411.001100000
droVir3
CTCCTATT---ATAATTAGGTATAGGAGATTT--------AATATTAATACTGATAGGAGCAATTATTTTCGAGAATTAGTTATGTTGTATGTCCCATGGAGGGATGAAAACGTAGAACTA-GTAGCAAGAGACTGCGAATCGTTTTGCGGCCAGAATCATGAGT-TAATTGAGAGCAATCGCAGGAAATACAATAGCTTAAATGA---SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................................TAGAACTA-GTAGCAAGAGACTGCGAA.....................................................................26102.70270000000000000000000010000201016110050000000000000000000000000000
.................................................................................................................TAGAACTA-GTAGCAAGAGACTGCGAAT....................................................................27102.70270000000000000000000000000302011030050300000000000000000000000000
.................................................................................................................TAGAACTA-GTAGCAAGAGACTGCGA......................................................................25102.3023000000000000000000000000080207020030100000000000000000000000000
.............................................................................................................................................................TCATGAGT-TAATTGAGAGCAATCGCAG........................2792.0018000030000000100000000000151011110000102000000000000000000000000
.............................................................................................................................................................TCATGAGT-TAATTGAGAGCAATCGCA.........................2691.4413002000000000100000000000021102021010000000000000000000000000000
..................................................................TTTTCGAGAATTAGTTATGTTGTATGT....................................................................................................................27191.2123006100000000000000000000107211002000010100000000000000000000000
..................................................................TTTTCGAGAATTAGTTATGTTGTATG.....................................................................................................................26191.1622004001000000000000000003002260010000011000000000000000000000010
...............................................................................................................CGTAGAACTA-GTAGCAAGAGACTGCGA......................................................................2711.001000000000000000000000000000010000000000000000000000000000000000
.....................................................................................................................ACTA-GTAGCAAGAGACTGCGA......................................................................21110.829000002000000000000001000000020210000000100000000000000000000000
............................................................................TTAGTTATGTTGTATGTCCCATGGAGG..........................................................................................................27150.609000000000000000000000000040005000000000000000000000000000000000
................................................................................................................GTAGAACTA-GTAGCAAGAGACTGCGAA.....................................................................2770.574000000000000000000000000000000040000000000000000000000000000000
.............................................................................................................................................................TCATGAGT-TAATTGAGAGCAATCGC..........................2590.565000000000000000000001001000010000000101000000000000000000000000
............................................................................TTAGTTATGTTGTATGTCCCATGGAG...........................................................................................................26150.538000000000000000000000000040004000000000000000000000000000000000
.............................................................................................................................................................TCATGAGT-TAATTGAGAGCAATCGCAGG.......................2880.504001000000000000000000000011000000000010000000000000000000000000
.................................................................................................................TAGAACTA-GTAGCAAGAGACTGCG.......................................................................24110.455000000010010000000000000010002000000000000000000000000000000000
..................................................................TTTTCGAGAATTAGTTATGTTG.........................................................................................................................22190.428001010300000000000000000101010000000000000000000000000000000000
..................................................................TTTTCGAGAATTAGTTATGTTGT........................................................................................................................23190.428002020300000000000000000001000000000000000000000000000000000000
..................................................................TTTTCGAGAATTAGTTATGTTGTAT......................................................................................................................25190.428002000000000000000000000201200000000010000000000000000000000000
..................................................................................................................AGAACTA-GTAGCAAGAGACTG.........................................................................21120.425000000000000000000000002000020010000000000000000000000000000000
..................................................................TTTTCGAGAATTAGTTATGTTGTA.......................................................................................................................24190.377002000000000000000000000201000010000001000000000000000000000000
..................................................................................................................AGAACTA-GTAGCAAGAGACTGCG.......................................................................23120.334000000000000000000001000000020000000000000000000000000000000010
.............................................................................................................................................................TCATGAGT-TAATTGAGAGCAATCG...........................24100.303000000000000000000000000011010000000000000000000000000000000000
................................................TACTGATAGGAGCAATTATTTTCGAGA......................................................................................................................................27180.285000000000000000000000000020002000010000000000000000000000000000
.....................................................................................................................ACTA-GTAGCAAGAGACTGCG.......................................................................20120.253000000000000000000000000000000000010000200000000000000000000000
.....................................................................................................................ACTA-GTAGCAAGAGACTG.........................................................................18120.253000001000000000000000000000010000000000100000000000000000000000
......................................................................................................................................................................TAATTGAGAGCAATCGCAGGAAATACA................2780.252000000000000000000000000010000000000001000000000000000000000000
...................................................................................................................................................GCGGCCAGAATCATGAGT-TAATTGA....................................25130.233000000000000000000000000000011001000000000000000000000000000000
..............................................................................................................................................................CATGAGT-TAATTGAGAGCAATCGCAG........................2690.222000000000000000000000000000000000000001000000000100000000000000
................................................TACTGATAGGAGCAATTATTTTCGAGAA.....................................................................................................................................28180.224000000000000000000000000030001000000000000000000000000000000000
............................................................................TTAGTTATGTTGTATGTCCCATGGA............................................................................................................25150.203001000000000000000000000000002000000000000000000000000000000000
.....................................................................................................................ACTA-GTAGCAAGAGACTGCGAATC...................................................................24110.182000000000000000000000000000100000000000100000000000000000000000
.....................................................................................................................ACTA-GTAGCAAGAGACTGCGAATCGT.................................................................26110.182000000000000000000000001000000000000001000000000000000000000000
..................................................................................................................AGAACTA-GTAGCAAGAGACTGCGAAT....................................................................26110.182000000000000000000002000000000000000000000000000000000000000000
.....................................................................................................................ACTA-GTAGCAAGAGACTGCGAAT....................................................................23110.182000000000000000000000000000010000000010000000000000000000000000
..................................................................................................................AGAACTA-GTAGCAAGAGACTGCGA......................................................................24110.182000000000000000000000000000000010010000000000000000000000000000
...............................................................................................................................................TTTTGCGGCCAGAATCATGAGT-TAAT.......................................26120.172000000000000000000000000000001000000000000000000000000000010000
.....................................................................TCGAGAATTAGTTATGTTGTATGTCC..................................................................................................................26180.173000000000001000000000000000000000000002000000000000000000000000
.............................................................................................................................................................TCATGAGT-TAATTGAGAGCA...............................20120.172000000100000000000000000010000000000000000000000000000000000000
...................................................................TTTCGAGAATTAGTTATGTTGTATG.....................................................................................................................25190.163002000000000000000000000010000000000000000000000000000000000000
................................................TACTGATAGGAGCAATTATTTTCGA........................................................................................................................................25190.163000000000000000000000000000003000000000000000000000000000000000
................................................TACTGATAGGAGCAATTATTTTCGAT.......................................................................................................................................26190.163000000002000000000000000010000000000000000000000000000000000000
..................................................................TTTTCGAGAATTAGTTATG............................................................................................................................19190.163000000000000000000000000101100000000000000000000000000000000000
..................................................................TTTTCGAGAATTAGTTATGTTGTATC.....................................................................................................................26190.163000000100000000000000000001000100000000000000000000000000000000
.....................................................................TCGAGAATTAGTTATGTTGTATG.....................................................................................................................23190.163000010000000000000000000000000010000001000000000000000000000000
......................................................................................................................................................GCCAGAATCATGAGT-TAATTGAG...................................23130.152000000000000000000000000000000000100001000000000000000000000000
....................................................................................................................................................................T-TAATTGAGAGCAATCGCAGGAAATACA................2870.141000000000000000000000000000000001000000000000000000000000000000
..................................................................................................................................................................AGT-TAATTGAGAGCAATCGCAGGAAA....................2670.141000000000000000000000000000000000000100000000000000000000000000
.........................................................................................................................................................................TTGAGAGCAATCGCAGGAAATACAATA.............2770.141000000000000000000000000000000000001000000000000000000000000000
..............................................................................................................................................................CATGAGT-TAATTGAGAGCAATCGCAGGAAA....................3070.141000000000000000000000000000000000000000000000000010000000000000
................................................................................................................................................................TGAGT-TAATTGAGAGCAATCGCAGGA......................2670.141000000000000000000000000000000010000000000000000000000000000000
....................................................................................................................................................................T-TAATTGAGAGCAATCGCAGGAAAT...................2570.141000000000000000000000000000001000000000000000000000000000000000
.........................................................................................................................................................................TTGAGAGCAATCGCAGGAAATACAAT..............2670.141000000000000000000000000000000000000000000000000000000000000010
....................................................................................................................................................................T-TAATTGAGAGCAATCGCAGG.......................2180.131000000000000000000000000000000010000000000000000000000000000000
........................................................................................................................................................................ATTGAGAGCAATCGCAGGAAATACCC...............2680.131001000000000000000000000000000000000000000000000000000000000000
................................................................................TTATGTTGTATGTCCCATGGA............................................................................................................21170.122000000000000000000000000000000010010000000000000000000000000000
..............................................................................................................................................................CATGAGT-TAATTGAGAGCAATCGC..........................2490.111000000000000000000000000000000100000000000000000000000000000000
.............................................................................................................................................................TCATGAGT-TAATTGAGAGCAATCGCTTT.......................2890.111000000000000000000000000001000000000000000000000000000000000000
..............................................................................................................................................................CATGAGT-TAATTGAGAGCAATCGCA.........................2590.111000000000000000000000000000010000000000000000000000000000000000
................................................TACTGATAGGAGCAATTATTTTCGAG.......................................................................................................................................26180.112000000000000000000000000000001100000000000000000000000000000000
.....................................................................TCGAGAATTAGTTATGTTGTATGTC...................................................................................................................25180.112000010000000000000000000000000000100000000000000000000000000000
..................................................................................................................................................................................ATCGCAGGAAATACAATAGCTTAAATGA---2890.111000000000000000000000000000010000000000000000000000000000000000
................TAGGTATAGGAGATTT--------AATATTAATAC..............................................................................................................................................................2790.111000000000000000000000000000010000000000000000000000000000000000
...................................................................TTTCGAGAATTAGTTATGTTGTA.......................................................................................................................23190.112002000000000000000000000000000000000000000000000000000000000000
..................................................................TTTTCGAGAATTAGTTATGTTGTATCC....................................................................................................................27190.112002000000000000000000000000000000000000000000000000000000000000
..................................................................TTTTCGAGAATTAGTTATGTTGTCC......................................................................................................................25190.112000000000000000000000000001000000000000100000000000000000000000
..................................................................TTTTCGAGAATTAGTTATGT...........................................................................................................................20190.112000000100000000000000000000000000000010000000000000000000000000
................................................TACTGATAGGAGCAATTA...............................................................................................................................................18190.112000000000000000000000000010000000010000000000000000000000000000
...........................................................................ATTAGTTATGTTGTATCC....................................................................................................................18200.102000000000000000000000000000020000000000000000000000000000000000
..................................................................................................................................................................................ATCGCAGGAAATACAATAGCTTAAA......25100.101000000000000000000000000000000000000000100000000000000000000000
.................................................................................................................TAGAACTA-GTAGCAAGAGACTGCGAAAA...................................................................28100.101000000000000000000000000010000000000000000000000000000000000000
......................................................................................................................................................................TAATTGAGAGCAATCGCA.........................18100.101000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................................................................................ATCGCAGGAAATACAATAGCTTA........23100.101000000000000000000000000000100000000000000000000000000000000000
.................................................................................................................TAGAACTA-GTAGCAAGAGACTGCGAAA....................................................................27100.101000000000000000000000000010000000000000000000000000000000000000
.......................................................................................................................................................CCAGAATCATGAGT-TAATTGAGAGC................................25110.091000000000000000000000000000001000000000000000000000000000000000
.....................................................................................................................ACTA-GTAGCAAGAGACTGCGAATCG..................................................................25110.091001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................TCATGAGT-TAATTGAGAGCAATG............................23110.091000000000000000000000000001000000000000000000000000000000000000
......................................................................................................................................................GCCAGAATCATGAGT-TAATTGAGAGC................................26110.091000000000000000000000000000000000000001000000000000000000000000
.....................................................................................................................ACTA-GTAGCAAGAGACTGCGATA....................................................................23110.091001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................ACTA-GTAGCAAGAGACTGCGAATCTA.................................................................26110.091000000000000000000000000000000000000001000000000000000000000000
.............................................................................................................................................................TCATGAGT-TAATTGAGAGCAATC............................23110.091000000000000000000000000100000000000000000000000000000000000000
...............................................................................................................................................................ATGAGT-TAATTGAGAGCAATC............................21110.091000000000000000000000000000000000001000000000000000000000000000
.................................................................................................................TAGAACTA-GTAGCAAGAGACTGC........................................................................23110.091000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................AGAACTA-GTAGCAAGAGACTGCGATA....................................................................26110.091000000000000000000001000000000000000000000000000000000000000000
..............................................................................................................................................................CATGAGT-TAATTGAGAGCAA..............................20110.091000000000000100000000000000000000000000000000000000000000000000
.....................................................................................................................ACTA-GTAGCAAGAGACTGCGAATCGTC................................................................27110.091000000000000000000000001000000000000000000000000000000000000000
.............................................................................................................................................................TCATGAGT-TAATTGAGAGCAA..............................21110.091000000000000000000000000000000000000000100000000000000000000000
.....................................................................................................................ACTA-GTAGCAAGAGACTGCGAATCGTTT...............................................................28110.091000000000000000000000000000010000000000000000000000000000000000
.................................................................................................................TAGAACTA-GTAGCAAGAGA............................................................................19120.081000000000000000000000000010000000000000000000000000000000000000
..............................................................................................................................................GTTTTGCGGCCAGAATCATGAGT-TAATC......................................28120.081000000000000000000000000000001000000000000000000000000000000000
.....................................................................................................................ACTA-GTAGCAAGAGACTGC........................................................................19120.081000000000000000000000000000000100000000000000000000000000000000
.............................................................................................................................................................TCATGAGT-TAATTGAGAGC................................19120.081000000000000000000000000000000100000000000000000000000000000000
...............................................................................................................................................TTTTGCGGCCAGAATCATGAGT-TAATC......................................27120.081000000000000000000000000000001000000000000000000000000000000000
.................................................................................................................................................TTGCGGCCAGAATCATGAGT-TAATC......................................25120.081001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................AGAATCATGAGT-TAATTGAGAGC................................23120.081000000000000000000000000000000100000000000000000000000000000000
..................................................................................................................................................TGCGGCCAGAATCATGAGT-TAATTGAG...................................27120.081000000000000000000000000000001000000000000000000000000000000000
........................................................................................................................................................CAGAATCATGAGT-TAATTGAGAG.................................23120.081000000000100000000000000000000000000000000000000000000000000000
..................................................................................................................AGAACTA-GTAGCAAGAGACTGC........................................................................22120.081001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................AACTA-GTAGCAAGAGACTGCG.......................................................................21120.081000000000000000000000000000000000100000000000000000000000000000
..................................................................................................................................AGACTGCGAATCGTTTTGCGGCC........................................................23130.081000000000000000000000000000000000000000100000000000000000000000
...................................................................................................................................................GCGGCCAGAATCATGAGT-TAATTGAGA..................................27130.081000000000000000000000000010000000000000000000000000000000000000
..................................................................................................................................AGACTGCGAATCGTTTTGCGGC.........................................................22140.071000010000000000000000000000000000000000000000000000000000000000
.............................................................................TAGTTATGTTGTATGTCCCATGGAG...........................................................................................................25150.071000000000000000000000000000001000000000000000000000000000000000
.......................................................................................................................TA-GTAGCAAGAGACTGCGAATCGTT................................................................25150.071000000000000000000000000010000000000000000000000000000000000000
..............................TT--------AATATTAATACTGATAGGAGCAA..................................................................................................................................................25150.071000000000000000000000000000000100000000000000000000000000000000
............................................................................TTAGTTATGTTGTATGTCCCATGGAGGC.........................................................................................................28150.071000000000000000000000000000001000000000000000000000000000000000
............................................................................TTAGTTATGTTGTATGTCCCATGGAGGT.........................................................................................................28150.071000000000000000000000000010000000000000000000000000000000000000
............................................TTAATACTGATAGGAGCAATTATT.............................................................................................................................................24150.071000000000000000000000000000001000000000000000000000000000000000
.................................................................................TATGTTGTATGTCCCATGGAGGGATGAAA...................................................................................................29150.071000000000000000000000000000001000000000000000000000000000000000
............................................TTAATACTGATAGGAGCAATTA...............................................................................................................................................22150.071000000000000000000000000000000010000000000000000000000000000000
.......................................................................................................................TA-GTAGCAAGAGACTGCGAATCGTTT...............................................................26150.071000000000000000000000000000001000000000000000000000000000000000
.................................................ACTGATAGGAGCAATTATTTTCGAGAAT....................................................................................................................................28180.061000000000000000000000000000001000000000000000000000000000000000
..................................................................TTTTCGAGAATTAGTTATGTTGTATGTCC..................................................................................................................29180.061001000000000000000000000000000000000000000000000000000000000000
..................................................................TTTTCGAGAATTAGTTATGTTGTATGTC...................................................................................................................28180.061000000000000000000000000000000100000000000000000000000000000000
..................................................CTGATAGGAGCAATTATTTTCGAGAATT...................................................................................................................................28180.061001000000000000000000000000000000000000000000000000000000000000
.......................................................................GAGAATTAGTTATGTTGTATGTCCC.................................................................................................................25180.061000000000000000000000000000000100000000000000000000000000000000
.....................................................................TCGAGAATTAGTTATGTTGTATGTCCCC................................................................................................................28180.061000000000000000000000000000000000000001000000000000000000000000
...................................................................TTTCGAGAATTAGTTATGTTGTATGTC...................................................................................................................27180.061001000000000000000000000000000000000000000000000000000000000000
.....................................................................TCGAGAATTAGTTATGTTGTATGTCCCA................................................................................................................28180.061000010000000000000000000000000000000000000000000000000000000000
...................................................................TTTCGAGAATTAGTTATGTTGTATGT....................................................................................................................26190.051001000000000000000000000000000000000000000000000000000000000000
................................................TACTGATAGGAGCAATTAT..............................................................................................................................................19190.051000000000000000000000000010000000000000000000000000000000000000
...................................................................TTTCGAGAATTAGTTATGTTGT........................................................................................................................22190.051001000000000000000000000000000000000000000000000000000000000000
.......................................................................GAGAATTAGTTATGTTGTATGT....................................................................................................................22190.051000000000000000000000000100000000000000000000000000000000000000
................................................TACTGATAGGAGCAATTATTTTCGAA.......................................................................................................................................26190.051000000000000000000000000010000000000000000000000000000000000000
................................................TACTGATAGGAGCAATTATTTTC..........................................................................................................................................23190.051000000000000000000000000000001000000000000000000000000000000000
................................................TACTGATAGGAGCAATTATTC............................................................................................................................................21190.051000000000000000000000000000001000000000000000000000000000000000
..................................................................TTTTCGAGAATTAGTTATGTT..........................................................................................................................21190.051000000000000000000000000001000000000000000000000000000000000000
...................................................................TTTCGAGAATTAGTTATGT...........................................................................................................................19190.051000000000000000000000000000001000000000000000000000000000000000
............................................................................TTAGTTATGTTGTATGTCCCATGG.............................................................................................................24190.051000000000000000000000000010000000000000000000000000000000000000
..................................................................TTTTCGAGAATTAGTTAT.............................................................................................................................18190.051000000000000000000000000000010000000000000000000000000000000000
..............................................................................AGTTATGTTGTATGTCCT.................................................................................................................18190.051000000000000000000000000100000000000000000000000000000000000000
.....................................................................TCGAGAATTAGTTATGTTGTATGT....................................................................................................................24190.051000000000000000000000000000000000000001000000000000000000000000
..................................................................TTTTCGAGAATTAGTTATGTTGTATGC....................................................................................................................27190.051000100000000000000000000000000000000000000000000000000000000000
................................................TACTGATAGGAGCAATTATTTTCG.........................................................................................................................................24190.051000000000000000000000000010000000000000000000000000000000000000
............................................................................TTAGTTATGTTGTATGTCCC.................................................................................................................20190.051000000000000000000000000000000000000001000000000000000000000000
....................................................................TTCGAGAATTAGTTATGTTGTA.......................................................................................................................22190.051000000000000000000000000000001000000000000000000000000000000000
droGri2
GC-----------------------------------------------------------AACTCTTTTCGCTAGCTAGTTATGTTATATGTTCCGTGGAAATATGAGGATTTGGAATTA-ATCACGCGGGATTGCGAACTTTTATGCAGCTAAACTCTAGACA-TAATTGAAACCAATC-----------GAA------GAAAA---SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
GGCCTTGC---ACAATCAGGTATAGGAAATAT--------AATATTAACACTGATAGGCAGAATTACTTTAGGGAATTAGTTATGTTGTATTTTCCATGGAGGGACGAGCAAATTGAATTA-GTTCAGAGAAATTGTGAGGAGTTTTACAATGAACATGAGGAAA-TTATTAGGGCCGGGT---------TCATC------AAATA---SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................................................................................................................................................GAAA-TTATTAGGGCCGGGT---------TCA................2290.44404000
........................................................................................................................A-GTTCAGAGAAATTGTGAGGAGTT................................................................24150.40606000
........................................................................................................................A-GTTCAGAGAAATTGTGAGGAGTTT...............................................................25150.33502030
...........................................................................................................................TTCAGAGAAATTGTGAGGAGTTT...............................................................23150.27402020
........................................................................................................................A-GTTCAGAGAAATTGTGAGGAGT.................................................................23150.27404000
................................................................................TTATGTTGTATTTTCCATGGAGGGA........................................................................................................25160.19303000
......................................................................................................................TTA-GTTCAGAGAAATTGTGAGGAGTTT...............................................................27150.13201010
..........................................................................................................................GTTCAGAGAAATTGTGAGGAGTTT...............................................................24150.13202000
.......................................................................................................................TA-GTTCAGAGAAATTGTGAGG....................................................................21160.13201010
.................................................................................TATGTTGTATTTTCCATGGAGG..........................................................................................................22170.12202000
.........................................................................................................................................................AACATGAGGAAA-TTATTAGGGCCG...............................2490.11101000
..................................................................................................................................................................AAA-TTATTAGGGCCGGGT---------...................1890.11101000
.......................................................................................................................................................TGAACATGAGGAAA-TTATTAGGGC.................................2490.11100010
...............................................................................................................................................................AGGAAA-TTATTAGGGCCGGGT---------TCA................2490.11101000
.......................................................................................................................................................TGAACATGAGGAAA-TTATTAGGGCCGG..............................2790.11101000
.............................................................................................................................................................TGAGGAAA-TTATTAGGGCCGGGT---------TT.................2590.11100010
............................................................................................................................................................ATGAGGAAA-TTATTAGGGCCG...............................21100.10100010
.................................................................ACTTTAGGGAATTAGTTATGTTGT........................................................................................................................24140.07101000
.............................................................AATTACTTTAGGGAATTAGTTAT.............................................................................................................................23140.07101000
...........................................................AGAATTACTTTAGGGAATTAGTTAT.............................................................................................................................25140.07101000
.............................................................AATTACTTTAGGGAATTAGTTATG............................................................................................................................24140.07101000
.............................................................AATTACTTTAGGGAATTAGTTATGT...........................................................................................................................25140.07101000
.........................................................GCAGAATTACTTTAGGGAAT....................................................................................................................................20150.07100010
...................................................TGATAGGCAGAATTACTTTAGGGAAT....................................................................................................................................26150.07100010
...........................................................AGAATTACTTTAGGGAATTAGTT...............................................................................................................................23150.07101000
.................................................ACTGATAGGCAGAATTACTTT...........................................................................................................................................21150.07100010
...........................................................AGAATTACTTTAGGGAATTAGTTA..............................................................................................................................24150.07101000
...........................................................................................................................TTCAGAGAAATTGTGAGGAGT.................................................................21150.07101000
.......................................................................................................................TA-GTTCAGAGAAATTGTGAGGAGTTT...............................................................26150.07100100
......................................................................................................................TTA-GTTCAGAGAAATTGTGAGGAGTT................................................................26150.07101000
........................................................................................................................A-GTTCAGAGAAATTGTGAGGAG..................................................................22160.06101000
........................................................................................................................A-GTTCAGAGAAATTGTGA......................................................................18160.06100010
..........................................................................................................................GTTCAGAGAAATTGTGAGGAG..................................................................21160.06101000
......................................................................................................................TTA-GTTCAGAGAAATTGTGAGGA...................................................................23160.06101000
................................................................................TTATGTTGTATTTTCCATGGAGGG.........................................................................................................24160.06101000
.................................................................................................................TTGAATTA-GTTCAGAGAAATT..........................................................................21160.06100010
.................................................................................TATGTTGTATTTTCCATGGAGGG.........................................................................................................23160.06101000
................................................................................TTATGTTGTATTTTCCATGGAGGGACG......................................................................................................27160.06100100
............................................................................................TTCCATGGAGGGACGAGCAAATTGAAT..........................................................................................27170.06101000
...........................................................................................TTTCCATGGAGGGACGAGCAAATTGAAT..........................................................................................28170.06101000
...................................................................................TGTTGTATTTTCCATGGAGG..........................................................................................................20170.06100010
................................................................................TTATGTTGTATTTTCCATGGAGG..........................................................................................................23170.06101000
.............................................................................TAGTTATGTTGTATTTTCCATG..............................................................................................................22180.06101000
...................................................................TTTAGGGAATTAGTTATGTTGTA.......................................................................................................................23180.06101000
................................................................................TTATGTTGTATTTTCCATGC.............................................................................................................20180.06100010
............................................................................TTAGTTATGTTGTATTTTC..................................................................................................................19200.05100010
....................................................................TTAGGGAATTAGTTATGTTGTATTT....................................................................................................................25200.05100010
.....................................................................TAGGGAATTAGTTATGTTGTATTTTCC.................................................................................................................27200.05100010
dp5
AGCCGTCC---ATTTTAAAATATATGAGGTTT--------AATATAAATACAGATAGGTCAAACTATTTTAGAGCATTAGCTATGCTGTTTTATCCGTGGAGAGATGAAGAGAAAGATTTA-GTGAGCGTAAATTGCGAGGATCTTTATAATAATCATCAGGAGT-TGGTAAATTCAAATT---------TCCAA------AAATT---SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................................................................................GATTTA-GTGAGCGTAAATTGCGAG.....................................................................2490.7870700000000
...................................................................................................................GATTTA-GTGAGCGTAAATTGCGAGG....................................................................2590.6760500001000
..........................................................................................................................................AGGATCTTTATAATAATCATCAGG...............................................2480.6350500000000
.......................ATGAGGTTT--------AATATAAATACAGA...........................................................................................................................................................2390.5650100000400
...................................................................................................................GATTTA-GTGAGCGTAAATTGCGA......................................................................2390.5650300000110
...........................................................................................TATCCGTGGAGAGATGAAGAGAAAGAT...........................................................................................2770.4330300000000
..........................................................................................................................................AGGATCTTTATAATAATCATCAGGA..............................................2580.3830300000000
........................................................................................................ATGAAGAGAAAGATTTA-GTGAGC.................................................................................2380.3830300000000
...................................................................................TGCTGTTTTATCCGTGGAGAGATG......................................................................................................2480.3830300000000
....................TATATGAGGTTT--------AATATAAATACAGA...........................................................................................................................................................2690.3330000000300
..............................TT--------AATATAAATACAGATA.........................................................................................................................................................1890.3330000000300
....................................................................................................................................................TAATAATCATCAGGAGT-TGGTAAA....................................2460.3320000000020
.......................ATGAGGTTT--------AATATAAATACAGAT..........................................................................................................................................................2490.3330100000020
...................................................................................................................GATTTA-GTGAGCGTAAATTGCG.......................................................................2290.3330300000000
...........................................................................................TATCCGTGGAGAGATGAAGAGAAAGA............................................................................................2670.2920200000000
...........................................................................................TATCCGTGGAGAGATGAAGAGAAAGATT..........................................................................................2870.2920200000000
.......................................................................................................GATGAAGAGAAAGATTTA-GTGAG..................................................................................2380.2520200000000
...................................................................................TGCTGTTTTATCCGTGGAGAGAT.......................................................................................................2380.2520200000000
................................................................TATTTTAGAGCATTAGCTATGCTGT........................................................................................................................2580.2520100000010
...........................................................................................TATCCGTGGAGAGATGAAGAGA................................................................................................2280.2520100001000
.......................................................................................................GATGAAGAGAAAGATTTA-GTGA...................................................................................2280.2520100100000
..........................................................................................................................................AGGATCTTTATAATAATCATC..................................................2180.2520110000000
...................................................................................TGCTGTTTTATCCGTGGAGAGATGAA....................................................................................................2680.2520200000000
.......................ATGAGGTTT--------AATATAAATACAGATA.........................................................................................................................................................2590.2220200000000
.......................ATGAGGTTT--------AATATAAATACAGATAGG.......................................................................................................................................................2790.2220200000000
...................................................................................................................GATTTA-GTGAGCGTAAATTGCGAGGA...................................................................2690.2220200000000
.......................ATGAGGTTT--------AATATAAATACAGATAC........................................................................................................................................................2690.2220000000200
.......................ATGAGGTTT--------AATATAAATACAG............................................................................................................................................................2290.2220200000000
....................................................................................................................ATTTA-GTGAGCGTAAATTGCGAG.....................................................................23100.2020200000000
..........................................................................................................................................AGGATCTTTATAATAATCATCAGGAG.............................................2660.1710100000000
..............................................................................................................................................TCTTTATAATAATCATCAGGAGT-TGG........................................2660.1710000000010
....................................................................................................................................................TAATAATCATCAGGAGT-TGGT.......................................2160.1710000000010
...................................................................................................................................................ATAATAATCATCAGGAGT-TGG........................................2160.1710100000000
..........................................................TCAAACTATTTTAGAGCATTAGCTA..............................................................................................................................2570.1410100000000
.....................................................................................................GAGATGAAGAGAAAGATTTA-GTG....................................................................................2370.1410100000000
..........................................................................................TTATCCGTGGAGAGATGAAGAGAAAG.............................................................................................2670.1410100000000
..........................................................................................TTATCCGTGGAGAGATGAAGAGAAAGA............................................................................................2770.1410100000000
............................................................................................ATCCGTGGAGAGATGAAGAGAAAG.............................................................................................2470.1410100000000
.............................................................................................TCCGTGGAGAGATGAAGAGAAAGATT..........................................................................................2670.1410100000000
.........................................................................................................................................................................TAAATTCAAATT---------TCCAA------AAATT---2280.1310010000000
...................................................................................TGCTGTTTTATCCGTGGAGAGATGA.....................................................................................................2580.1310100000000
.........................................................................................................TGAAGAGAAAGATTTA-GTGA...................................................................................2080.1310100000000
..........................................................................................................................................AGGATCTTTATAATAATCATCA.................................................2280.1310100000000
.......................................................................................................GATGAAGAGAAAGATTTA-GTGAGCG................................................................................2580.1310100000000
..........................................................................................................................................AGGATCTTTATAATAATCATCAGGACA-...........................................2780.1310100000000
...............................................................................................................GAAAGATTTA-GTGAGCGTAAATTG.........................................................................2480.1310100000000
........................................................................................................ATGAAGAGAAAGATTTA-GTGAGCG................................................................................2480.1310100000000
....................................................................................GCTGTTTTATCCGTGGAGAGATGA.....................................................................................................2480.1310100000000
...........................................................................................TATCCGTGGAGAGATGAAGAGAAA..............................................................................................2480.1310100000000
...............................................................................................................GAAAGATTTA-GTGAGCGTAAAT...........................................................................2280.1310010000000
...........................................................................................................AAGAGAAAGATTTA-GTGAGCGTAAA............................................................................2580.1310100000000
..........................................................................................................................................AGGATCTTTATAATAATCATCAG................................................2380.1310100000000
...........................................................................................TATCCGTGGAGAGATGAAG...................................................................................................1980.1310100000000
................................................................TATTTTAGAGCATTAGCTATGCTGTTT......................................................................................................................2780.1310100000000
.......................................................................................................GATGAAGAGAAAGATTTA-GTGAGC.................................................................................2480.1310100000000
............................................................................................ATCCGTGGAGAGATGAAGAGAAA..............................................................................................2380.1310100000000
....................................................................................................................................ATTGCGAGGATCTTTATAATAATCA....................................................2590.1110100000000
...................................................................................TGCTGTTTTATCCGTGGAG...........................................................................................................1990.1110100000000
.........................................................................GCATTAGCTATGCTGTTTTATCCGT...............................................................................................................2590.1110100000000
............................GTTT--------AATATAAATACAGAT..........................................................................................................................................................1990.1110100000000
...................................................................................................................GATTTA-GTGAGCGTAAATT..........................................................................1990.1110100000000
...................................................................................................................GATTTA-GTGAGCGTAAATTGCGAGGATC.................................................................2890.1110100000000
........................TGAGGTTT--------AATATAAATACAGATAGG.......................................................................................................................................................2690.1110100000000
.......................ATGAGGTTT--------AATATAAATACAGATAG........................................................................................................................................................2690.1110100000000
.........................................................................GCATTAGCTATGCTGTTTTATCCG................................................................................................................2490.1110100000000
........................................................................................................................A-GTGAGCGTAAATTGCGAGGAT..................................................................22100.1010100000000
....................................................................................................................ATTTA-GTGAGCGTAAATTGCGAGG....................................................................24100.1010100000000
......................................................................................................................................TGCGAGGATCTTTATAATAATC.....................................................22100.1010100000000
..........................................................................................................................GTGAGCGTAAATTGCGAGGATC.................................................................22100.1010100000000
...........................................................................................................................TGAGCGTAAATTGCGAGGATCTTT..............................................................24100.1010100000000
...........................................................................................................................TGAGCGTAAATTGCGAGGATCTT...............................................................23100.1010000000100
droPer2
AGCCGTCC---ATTTTAAAATATATGAGGTTT--------AATATAAATACAGATAGGTCAAACTATTTTAGAGCATTAGCTATGCTGTTTTATCCGTGGAGAGATGAAGAGAAAGATTTA-GTGAGCGTAAATTGCGAGGATCTTTATAATAATCATCAGGAGT-TGGTAAATTCAAATT---------TCCAA------AAATT---SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................................TATCCGTGGAGAGATGAAGAGA................................................................................................22170.295000005
.......................................................................................................GATGAAGAGAAAGATTTA-GTGAGC.................................................................................24190.163000003
...........................................................................................TATCCGTGGAGAGATGAAGAGAA...............................................................................................23170.061010000
........................................................................................................ATGAAGAGAAAGATTTA-GTGAGC.................................................................................23190.051000001
.........................GAGGTTT--------AATATAAATACAGATAG........................................................................................................................................................24190.051010000
..........................................................................................................................................AGGATCTTTATAATAATCATCAGG...............................................24200.051010000
.................................................................................TATGCTGTTTTATCCGTGGA............................................................................................................20200.051000001
........................TGAGGTTT--------AATATAAATACAGAT..........................................................................................................................................................23200.051010000
droAna3
ATCCCCTG---ATTCTTAGATGGGTTCGCTTT--------AGCATTAACTATTCACCATCGGATTATTTCCGAGAGCATTTAATGCTCTTCTATCCTTGGCGAAATTAAGAAGCTGAACTT-CTTTCCAACGACGTTGAAAACACATTTAGAACTAATCATGAAT-CTATTAGGATCATGAAAAGAAACTATGATGTGTTTGATGA---SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................................................................................................TT-CTTTCCAACGACGTTGAA.....................................................................20200.051100000
droBip1
GGCATCCCCTGATTCTAAGGTGGGTTCGCTTT--------AGCATTAACTCTTCACCTTCCGATTATTTCCGAGAGCATTTAATGCTCTTCTATCCTTGGCGAAATGAAGAAGCTGAACTT-CTTTCCAACGACATTGAAGACACATTCCGAGTAAACCATGAAG-CCATTAAGGACAAAAAAAGGAACTATGATGTGTTTGATGA---SizeHit CountTotal NormTotal
No Reads
droKik1
AGCATGCCTTAATTCTTAGATGGGTTCGCTTT--------AGCATAAACTCTTCCCCTTCTGATTATTTCAGAGAGCACGTAATGCTTTTCTTCCCATGGAGAAATGAAGAGACTGAACTT-CTTTCGAATGACAATGAAATGACATTCAGAAATAATCATGAAATTCATTAAGCGCAACAAAGAGCAATATGATGTGTTTGATGA---SizeHit CountTotal NormTotal
No Reads
droFic1
AGCATGCCCTAATCCTCCGATGGGTCCGATTT--------AGCTTAAATTTTTCCCCATCCGACTATTTTCGAGAGCACGTAATGCTTTTCTTTCCGTGGAGAAATGAAGATACTGAACTC-ATATCAAACGATAACGAGAGCACCTTCAGAAACAACTATGAGC-TAATTAAACGCAAC------------------------AA---SizeHit CountTotal NormTotal
No Reads
droEle1
ATTT---------------------------------------------------------GAATATACTAGAGAGCATGTAATGCTTTTCTTCCCGTGGAGGAGTGAGGAAAGGGACCTA-ATTTCAAATGATAATGAAGGAACATTCGGAAATAATTTTGAAA-TAATCAAGGCCAACAAAGAGCAATATGATGTTTTTGATGA---SizeHit CountTotal NormTotal
No Reads
droRho1
AGCCAAGT---ATCATTAGGTATAGCCCCTTT--------AATATTAATTCTGATAGGCCCAACTATTTTAGAGCATTAGTTATGCTATATTCTCCATGGAGAGATGAACAGGTAGAATTG-TTTCAGAGAAATTGTGAGGAGTTTTATTATGAGCACGAGGAGG-CTATTAAAGCCAACT---------TTGATAGGTATAATGC---SizeHit CountTotal NormTotal
No Reads
droBia1
GGCCCAGT---ATTAATAGGTATAGCCCGTTC--------AATATTAACACAGATAAGTGGAATTATTTAAGAGCATTAGTTATGCTTTATTCTCCATGGAGAGACGAACCGATAGAATTA-ATATTCAGAAATTGTGACGAGTTTTACCAAGTAAATGAGGTGG-CTATTAAAGCCAATT---------T------------------SizeHit CountTotal NormTotal
No Reads
droTak1
AGACGAGT---ATCATTAGGTATAGCCCCTTT--------AATATTAATTCTGATAGGCCCAACTATTTTAGAGTATTAGTTATGCTTTATTCTCCATGGAGAGATGAACAGGTAGAATTG-TTTCAGAGAAATTGTGAGGAGTTTTATCATGAGCACGAGGAGG-CTATTAAAGCCAACT---------TTGATTGGTATAATGT---SizeHit CountTotal NormTotal
No Reads
droEug1
AGAAGAGT---ATAATTAGATATAGTCCTTTT--------AATGTAAACACAGAAAGGTCAAATTATTTCAGATCATTTGTTATGTTCTATGCTCCTTGGAGAAATGAGCAGGTAGAACTA-ATGGAAATAAATTGCGAGTAGTATTATACTCTTAATGAAGAGG-CTATTAAAGCCAATT---------TTGAA-------ACGT---SizeHit CountTotal NormTotal
No Reads
dm3
GT---------ATTATTATGTATAGTTCATTC--------AATATTAATACAGATAGGATAAACTATTTTAGATCTTTAGTATTGCTCTATTCTCCGTGGAGAAACGACCATCTAAAGTTTCATTCAACGAAAGTGTAAAGATTTTGACAGTGAGAATGAAAAGT-T---TAAAGCTA---------------------------T---SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................TTAATACAGATAGGATAAACT................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
.............................................TAATACAGATAGGATAAG..................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
droSim2
A----------------------------TTT--------CATATTAATACAGAGAGGATAAACTATTTTAGATCATTAGTAATGCTCTATTCTCCGTGGTGAAATGAACAGGAAAAGTTT-ATTCA-CGAAATTGTAAAGATTTTTACAAGGAGAAT----------------------T---------TTGAAAAGTATAATGT---SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
A----------------------------TTT--------AATATTAATACAGAGAGGATAAACTATTTTAGATCATTAGTAATGCTCTATTCTCTGTGGTGAAATGAACAGGAAAAGTTT-ATTCA-CGAAATTGTAAAGATTTTTACAAGGAGAAT----------------------T---------TTGAAAAGTATAATGT---SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
GGGCTAGT---ATTATTAGGTATAGGAAATTT--------AATATTAATACAGATAGGACTAACTATTTTAGAACACTAGTAATGCTCTTTTCTCCGTGGAGAAACGAACAGGTAGATTTG-ATTCAAAGAAATTGCGAGGAATTTTACAATGAGAATGAGGAGG-CTATTAAAGCCAACT---------TTGAAAAGTATAATGC---SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............................................................................TAGTAATGCTCTTTTCTCCGTGGAGAAT........................................................................................................28160.6310000000000010
...............................................................................................................GGTAGATTTG-ATTCAAAGAAATTGCG.......................................................................26110.09100000100000
..........................................................................CACTAGTAATGCTCTTTTCTCCG................................................................................................................23130.08101000000000
..............................................................................................CCGTGGAGAAACGAACAGGTAGAT...........................................................................................24160.06100000010000
droEre2
AGAGAAT---------TAAATAAGGCTAGTATTATACGTTAAAA----------------TTATTATTGTAGATAATTAGTAACGCTGTATTCTCCGAGGAGAAACGAGCCGGTAGAGTTA-ATTCAGGGAAATAGTGAAGAATTTTGCAATGAGAATGAGGAGG-CTA----AGGCAAGT---------TCGAAAAGTAAATTGCCATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/15/2015 at 02:38 PM