ID:

dmo_1815

 Coordinate:

scaffold_6540:4746535-4746611 +

 Confidence:

confident

 Class:

Mirtron

 Genomic Locale:

intron

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-22.6

Flybase annnotation

intron [Dmoj\GI24013-in]; CDS [Dmoj\GI24013-cds]; CDS [Dmoj\GI24013-cds]

No Repeatable elements found

Sense Strand Reads

CTAATCATGGGCGTGGCGCTGCTGACGCTGGCGCTCTGGGCATACATCAGGTGGGTATCGGCAACTGAAAGCCCAACAGGTGAGCGAGCTCCCAAACTAACTCTCCATCCATTTGCCATACCCACAGGTATAGCGGCGAGCTGAGCGATTTCGGCGGAAAGCTGGATGAGTTTGCAA

**************************************************((((((((.(((((.((...........((.(((..((........))..))).))...)).)))))))))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M060

embryo

 M046

female body

 V041

embryo

 V056

head

 V049

head

 V110

male body
.........................................................................................................CATCCATTTGCCATACCCACAG.................................................. 22 0 1 505.00 505 308 135 40 11 10 1
.........................................................................................................CATCCATTTGCCATACCCACAGT................................................. 23 1 1 320.00 320 219 17 36 28 14 6
.........................................................................................................CATCCATTTGCCATACCCACA................................................... 21 0 1 98.00 98 48 42 2 4 1 1
...........................................................................................................TCCATTTGCCATACCCACAGT................................................. 21 1 1 93.00 93 41 19 13 13 6 1
.........................................................................................................CATCCATTTGCCATACCCACAGA................................................. 23 1 1 56.00 56 39 13 4 0 0 0
...........................................................................................................TCCATTTGCCATACCCACAG.................................................. 20 0 1 55.00 55 25 22 2 2 3 1
.........................................................................................................CATCCATTTGCCATACCCACAGC................................................. 23 1 1 47.00 47 47 0 0 0 0 0
..........................................................................................................ATCCATTTGCCATACCCACAG.................................................. 21 0 1 32.00 32 8 22 0 1 1 0
..................................................GTGGGTATCGGCAACTGAAAGCC........................................................................................................ 23 0 1 28.00 28 15 2 1 2 0 8
.........................................................................................................CATCCATTTGCCATACCCAC.................................................... 20 0 1 28.00 28 16 11 0 1 0 0
..........................................................................................................ATCCATTTGCCATACCCACAGT................................................. 22 1 1 25.00 25 13 8 3 1 0 0
.........................................................................................................CGTCCATTTGCCATACCCACAGT................................................. 23 2 1 19.00 19 19 0 0 0 0 0
..................................................GTGGGTATCGGCAACTGAAAGC......................................................................................................... 22 0 1 19.00 19 12 1 0 3 0 3
.........................................................................................................CATCCATTTGCCATACCCACAC.................................................. 22 1 1 16.00 16 15 1 0 0 0 0
.........................................................................................................CGTCCATTTGCCATACCCACAG.................................................. 22 1 1 13.00 13 13 0 0 0 0 0
...........................................................................................................TCCATTTGCCATACCCACAGC................................................. 21 1 1 12.00 12 12 0 0 0 0 0
...........................................................................................................TCCATTTGCCATACCCACAGTT................................................ 22 1 1 11.00 11 5 6 0 0 0 0
.........................................................................................................CATTCATTTGCCATACCCACAG.................................................. 22 1 1 11.00 11 11 0 0 0 0 0
...........................................................................................................TCCATTTGCCATACCCACAGA................................................. 21 1 1 10.00 10 3 7 0 0 0 0
..................................................GGGGGTATCGGCAACTGAAAGCC........................................................................................................ 23 1 1 10.00 10 10 0 0 0 0 0
.........................................................................................................CATTCATTTGCCATACCCACAGT................................................. 23 2 1 10.00 10 10 0 0 0 0 0
.........................................................................................................CATCCATTTGCCATACCCACAGTT................................................ 24 1 1 8.00 8 5 2 0 1 0 0
.........................................................................................................CACCCATTTGCCATACCCACAGT................................................. 23 2 1 8.00 8 8 0 0 0 0 0
.........................................................................................................CACCCATTTGCCATACCCACAG.................................................. 22 1 1 7.00 7 7 0 0 0 0 0
.............................................................................................................CATTTGCCATACCCACAGT................................................. 19 1 1 6.00 6 4 0 1 0 1 0
..........................................................................................................ATCCATTTGCCATACCCACA................................................... 20 0 1 6.00 6 1 5 0 0 0 0
.........................................................................................................CGTCCATTTGCCATACCCACAGC................................................. 23 2 1 6.00 6 6 0 0 0 0 0
.............................................................................................................CATTTGCCATACCCACAG.................................................. 18 0 1 6.00 6 1 4 0 1 0 0
.........................................................................................................CGTCCATTTGCCATACCCACA................................................... 21 1 1 6.00 6 6 0 0 0 0 0
........................................................................................................CCATCCATTTGCCATACCCACAGT................................................. 24 1 1 6.00 6 6 0 0 0 0 0
..........................................................................................................ATCCATTTGCCATACCCACAC.................................................. 21 1 1 6.00 6 3 3 0 0 0 0
.........................................................................................................CATCCATTTGCCCTACCCACAGT................................................. 23 2 1 5.00 5 4 0 0 0 1 0
..........................................................................................................ATCCATTTGCCATACCCACAGC................................................. 22 1 1 5.00 5 5 0 0 0 0 0
.........................................................................................................CATCCATTTGCCATACCCACAA.................................................. 22 1 1 5.00 5 2 3 0 0 0 0
........................................................................................................CCATCCATTTGCCATACCCACAG.................................................. 23 0 1 4.00 4 4 0 0 0 0 0
..................................................GGGGGTATCGGCAACTGAAAGC......................................................................................................... 22 1 1 4.00 4 4 0 0 0 0 0
......................................................................................................CTCCATCCATTTGCCATACCCACAG.................................................. 25 0 1 4.00 4 0 4 0 0 0 0
..................................................GTGGGTATCGGCAACTGAA............................................................................................................ 19 0 1 4.00 4 0 3 0 0 0 1
..........................................................................................................ATCCATTTGCCATACCCACAGA................................................. 22 1 1 4.00 4 0 4 0 0 0 0
.........................................................................................................CATCCACTTGCCATACCCACAGT................................................. 23 2 1 3.00 3 2 0 0 0 1 0
...........................................................................................................TCCATTTGCCATACCCACAGTA................................................ 22 2 1 3.00 3 3 0 0 0 0 0
.........................................................................................................CACCCATTTGCCATACCCACA................................................... 21 1 1 3.00 3 3 0 0 0 0 0
.........................................................................................................CATTCATTTGCCATACCCACA................................................... 21 1 1 3.00 3 3 0 0 0 0 0
..................................................GGGGGTATCGGCAACTGAAAGCCCAAC.................................................................................................... 27 1 1 3.00 3 3 0 0 0 0 0
............................................................................................................CCATTTGCCATACCCACAGT................................................. 20 1 1 3.00 3 0 2 1 0 0 0
.........................................................................................................TATCCATTTGCCATACCCACAGT................................................. 23 2 1 3.00 3 2 0 0 0 1 0
............................................................................................................CCATTTGCCATACCCACAG.................................................. 19 0 1 3.00 3 2 1 0 0 0 0
...........................................................................................................TCCTTTTGCCATACCCACAGT................................................. 21 2 1 2.00 2 2 0 0 0 0 0
.........................................................................................................CTTCCATTTGCCATACCCACAG.................................................. 22 1 1 2.00 2 2 0 0 0 0 0
.........................................................................................................TATCCATTTGCCATACCCACAGA................................................. 23 2 1 2.00 2 2 0 0 0 0 0
..................................................GTGGGTATCGGCAACTGAAAGCCC....................................................................................................... 24 0 1 2.00 2 1 0 0 0 0 1
.........................................................................................................CATTCATTTGCCATCCCCACAG.................................................. 22 2 1 2.00 2 2 0 0 0 0 0
.........................................................................................................TATCCATTTGCCATACCCACAG.................................................. 22 1 1 2.00 2 2 0 0 0 0 0
.........................................................................................................CATCCATTTGCCCTACCCACAGC................................................. 23 2 1 2.00 2 1 0 0 0 1 0
..................................................GTGGGTATCGGCAACTGAAAG.......................................................................................................... 21 0 1 2.00 2 0 1 0 0 0 1
.........................................................................................................CGTCCATTTGCCATACCCACAC.................................................. 22 2 2 2.00 4 4 0 0 0 0 0
.........................................................................................................CATCCATTTGCCATACCTACAG.................................................. 22 1 1 2.00 2 1 0 0 1 0 0
.........................................................................................................CATCCATTTGCCATACCCACACT................................................. 23 2 1 2.00 2 2 0 0 0 0 0
........................................................................................................GCATCCATTTGCCATACCCACAG.................................................. 23 1 1 2.00 2 1 1 0 0 0 0
...........................................................................................................TCCATTTGCCATACCCACAGTAA............................................... 23 2 1 2.00 2 1 1 0 0 0 0
.........................................................................................................CTTCCATTTGCCATACCCACAGT................................................. 23 2 1 2.00 2 2 0 0 0 0 0
...........................................................................................................TGCATTTGCCATACCCACAGT................................................. 21 2 2 1.50 3 3 0 0 0 0 0
...........................................................................................................TCAATTTGCCATACCCACAGT................................................. 21 2 2 1.50 3 3 0 0 0 0 0
..................................................GTGGGTATCGGCCACTGAAAGAC........................................................................................................ 23 2 1 1.00 1 1 0 0 0 0 0
..................................................GTCGGTATCGGCAACTGAAAGCC........................................................................................................ 23 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................................CATCCATTTGCAATACCCACAG.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................................CCTCCATTTGCCATACCCCCAGTT................................................ 24 3 1 1.00 1 0 0 0 1 0 0
...........................................................................................................TCCATTTGCCATACCCACAGTC................................................ 22 2 1 1.00 1 0 0 0 0 0 1
..........................................................................................................ATCCATTTGCCATACCCACACT................................................. 22 2 1 1.00 1 1 0 0 0 0 0
.........................................................................................................CATCCATTTGCCATACCCACACA................................................. 23 2 1 1.00 1 1 0 0 0 0 0
.........................................................................................................CATTCATTTGCCATACCCACAGC................................................. 23 2 1 1.00 1 1 0 0 0 0 0
.........................................................................................................CATCCATTTGCCATCCCCACCG.................................................. 22 2 1 1.00 1 0 0 1 0 0 0
...........................................................................................................TCCTTTTGCCATACCCACAG.................................................. 20 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................................CAGCCATTTGCCATACCCACAG.................................................. 22 1 1 1.00 1 0 0 0 0 1 0
........................................................................................................TCATCCATTTGCCATACCCACAG.................................................. 23 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................................ATCCATTTGCCATACGCACAGT................................................. 22 2 1 1.00 1 0 1 0 0 0 0
.........................................................................................................CATCCATTCGCCATACCCACAGT................................................. 23 2 1 1.00 1 1 0 0 0 0 0
..................................................GGGGGTATCGGCAACTGAAAG.......................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................................CATCCATCTGCCATACCCACCGC................................................. 23 3 1 1.00 1 0 0 0 1 0 0
........................................................................................................CCATCCATTTGCCATACCCAC.................................................... 21 0 1 1.00 1 1 0 0 0 0 0
.............TGGCGCTGCTGACGCTGGCGCTCTGGGCA....................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0
..........................................................................AACAGGTGAGCGAGCTCCC.................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................ATACATTTGCCATACCCACAG.................................................. 21 1 1 1.00 1 1 0 0 0 0 0
..................................................GTCGGTATCGGCAACTGAAAGC......................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..............................................................................GGTGAGCGAGCTCCCAAACTAACTCTC........................................................................ 27 0 1 1.00 1 0 1 0 0 0 0
.........................................................................................................CATCCATTTGCCATCCCCACAG.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................................CATCCATTTGCGATACCCAC.................................................... 20 1 1 1.00 1 0 1 0 0 0 0
.........................................................................................................CATCCATTTGACATACCCACAGC................................................. 23 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................................TCCATTTGCCATACCCACAGAA................................................ 22 2 1 1.00 1 1 0 0 0 0 0
...................................................TGGGTATCGGCAACTGAAAGCC........................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0
...............................................................AGTGAAAGCCCGACAGGTGAGCGT.......................................................................................... 24 3 1 1.00 1 0 0 1 0 0 0
..........................................................................................................ATCCATTTGCCATACCCACAT.................................................. 21 1 1 1.00 1 1 0 0 0 0 0
....................................................................................................CACTCCATCCAGTTGCCCTACCCACA................................................... 26 3 1 1.00 1 0 0 1 0 0 0
.........................................................................................................CATTCATTTGCCATACCCAC.................................................... 20 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................................AGCTATTTGCCATACCCACAG.................................................. 21 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................................AGCCATTTGCCATACCCACAGT................................................. 22 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................................GTCATCCATTTGCCATACCCACAGT................................................. 25 3 1 1.00 1 1 0 0 0 0 0
..................................................GGCGGTATCGGCAACTGAAAGCC........................................................................................................ 23 2 1 1.00 1 1 0 0 0 0 0
.........................................................................................................CATCCATTTACCATACCCACAGT................................................. 23 2 1 1.00 1 0 0 1 0 0 0
..........................................................................................................ATCCATTTGCCATACCCACAGTA................................................ 23 2 1 1.00 1 1 0 0 0 0 0
................................................................................TGAGCGAGCTCCCAAACTAACTCT......................................................................... 24 0 1 1.00 1 0 0 1 0 0 0
...............................................................................................................TTTGCCATACCCACAGAT................................................ 18 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................................CATCCATTTGCGATACCCACA................................................... 21 1 1 1.00 1 0 1 0 0 0 0
.........................................................................................................CATCCATTTGCCCTACCCACAG.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
............................................................................................................CCATTTGCCATACCCACAGA................................................. 20 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................................CGTCCATTTGCCATACCCACAGA................................................. 23 2 1 1.00 1 1 0 0 0 0 0
..................................................GTGGGGATCGGCAACTGAAAGC......................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................................TCAATTTGCCATACCCACAGC................................................. 21 2 1 1.00 1 0 0 1 0 0 0
..........................................................................AACAGGTGAGCGAGCTCC..................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................ATCCATTTGCCATAGCCACAGT................................................. 22 2 1 1.00 1 0 0 1 0 0 0
..................................................GTGGGTATCGGCAGCTGAAAGC......................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................................CATCCATTTGCCATACCCA..................................................... 19 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................................GATTTCGGCGGAAAGCTGGAT.......... 21 0 1 1.00 1 0 0 0 0 0 1
...........................................................................................................TCAATTTGCCATACCCACAG.................................................. 20 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................................CATCCGTTTGCCATACCCACAG.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................................AATCCATTTGCCATACCCACAG.................................................. 22 1 1 1.00 1 0 1 0 0 0 0
..............................................................................................................ATTTGCCATACCCACAGT................................................. 18 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................................CATCCATTTGCCATACCCATA................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................................CATCCATTTACCATACCCACAG.................................................. 22 1 1 1.00 1 0 0 1 0 0 0
............................................................................................................CCATTTGCCATACCCACAGC................................................. 20 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................................CATCCATTTGCTATACCCACAGT................................................. 23 2 1 1.00 1 0 1 0 0 0 0
.........................................................................................................CATCCATTTGCCATACCCACCGT................................................. 23 2 1 1.00 1 0 0 1 0 0 0
.........................................................................................................CATCAATTTGCCATACCCACACT................................................. 23 3 1 1.00 1 0 0 0 1 0 0
........................................................................................................CCATCCATTTGCCATACCCACA................................................... 22 0 1 1.00 1 0 1 0 0 0 0
.........................................................................................................CATCCATTTGCCCTACCCACA................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................................CATCCATTTGCCATACCCGCA................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................................CATCCATTTGCCATACCAAC.................................................... 20 1 1 1.00 1 0 0 0 1 0 0
..................................................GGGGGTATCGGCAACTGA............................................................................................................. 18 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................................TCCATTTGCCATACCCACACT................................................. 21 2 1 1.00 1 0 1 0 0 0 0
...........................................................................................................TCCATTTGCCAGACCCACAGT................................................. 21 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................................TCCATTTGCCATACCCAGAG.................................................. 20 1 1 1.00 1 0 0 1 0 0 0
.........................................................................................................CATCAATTTGCCATACCCACA................................................... 21 1 1 1.00 1 0 0 0 0 1 0
..................................................GTGGGTATCGGCAACTGA............................................................................................................. 18 0 1 1.00 1 0 1 0 0 0 0
.........................................................................................................CTTCCGTTTGCCATACCCACAG.................................................. 22 2 1 1.00 1 1 0 0 0 0 0
.........................................................................................................CATCCATTAGCCATACCCAC.................................................... 20 1 1 1.00 1 0 0 0 0 1 0
..................................................GTGGGTATCGGCCACTGAAAG.......................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0
.........................................................................................................CATCCATTTGCCATACCCACAGTTT............................................... 25 2 1 1.00 1 1 0 0 0 0 0
........................................................................................................CCATCCATTTGCCATACC....................................................... 18 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................TGCATTTGCCATACCCACAGTT................................................ 22 2 1 1.00 1 1 0 0 0 0 0
..................................................TTGGGTATCGGCAACTGAAAGCC........................................................................................................ 23 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TCCATCCATTTGCCATACCCACAG.................................................. 24 0 1 1.00 1 1 0 0 0 0 0
.....CATGGGCGTGGCGCTGCTG......................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0
....................................................................................................CTCTCCATCCATTTGCCATAC........................................................ 21 0 1 1.00 1 0 1 0 0 0 0
.........................................................................................................CAGCAATTTGCCATACCCACAGC................................................. 23 3 1 1.00 1 0 0 1 0 0 0
...........................................................................................................TCCATTTGCCATACCCACAC.................................................. 20 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................................CATCCATTTGCCATACCCCCAGT................................................. 23 2 1 1.00 1 0 0 0 1 0 0
...........................................................................................................TCCATTTGCCCTACCCACAG.................................................. 20 1 1 1.00 1 1 0 0 0 0 0
.....................................................GGTATCGGCAACTGAAAGCC........................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................CATCCATTTGCCATACCCACCG.................................................. 22 1 1 1.00 1 0 0 1 0 0 0
...........................................................................................................TCCATTTGCCAAACCCACAGT................................................. 21 2 1 1.00 1 0 1 0 0 0 0
...............................................................ACTGAAAGCCCAACAGGTGAG............................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0
.........................................................................................................CATCCATGTGCCATACCCACAG.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................................CATCCATTTGGCATACCCACAG.................................................. 22 1 1 1.00 1 0 1 0 0 0 0
........................................................................................................ACATCCATTTGCCATACCCACAG.................................................. 23 1 1 1.00 1 0 1 0 0 0 0
............................TGGCGCTCTGGGCATACATCAG............................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0
.........................................................................................................CATCCATTTGCCATACCCGCAGC................................................. 23 2 1 1.00 1 1 0 0 0 0 0
.......................GACGCTGGCGCTCTGGGCA....................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0
..........................................................................................................AGCCATTTGCCATACCCACAG.................................................. 21 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................................ATCCATTTGCCATACCCACAGAA................................................ 23 2 1 1.00 1 0 1 0 0 0 0
................................................................................TGAGCGAGCTCCCAAACTAAC............................................................................ 21 0 1 1.00 1 0 1 0 0 0 0
.........................................................................................................CATCCATTTGCCATACCCACAGAAAA.............................................. 26 3 1 1.00 1 0 1 0 0 0 0
.........................................................................................................CATCCGTTTGCCATACCCACAGT................................................. 23 2 1 1.00 1 1 0 0 0 0 0
.........................................................................................................CATCCATTTGCCATACCCACAGTTA............................................... 25 1 1 1.00 1 1 0 0 0 0 0
................................................................................TGAGCGAGCTCCCAAACTAACTC.......................................................................... 23 0 1 1.00 1 0 0 0 1 0 0
..........................................................................................................ATCCATTTGCCATACACACAG.................................................. 21 1 1 1.00 1 0 1 0 0 0 0
...........................................................................................................TCCATTTGCCATACCCAAAG.................................................. 20 1 1 1.00 1 0 0 0 0 1 0
..............GGCGCTGCTGACGCTGGCGCTCTGGGT........................................................................................................................................ 27 1 1 1.00 1 0 1 0 0 0 0
.........................................................................................................CATCCATTTGCAATACCCACAGT................................................. 23 2 1 1.00 1 1 0 0 0 0 0
.........................................................................................................CATCCATTTGACATACCCACAG.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................................ATCCATTTGCCATACCCACACAA................................................ 23 3 1 1.00 1 0 1 0 0 0 0
...........................................................................................................TGCATTTGCCATACCCACAG.................................................. 20 1 1 1.00 1 1 0 0 0 0 0
......................................................................................................GATCATCCATTTGCCATACCCACA................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..............................................................................................AACTAACTCTCCATCCATTTG.............................................................. 21 0 1 1.00 1 0 1 0 0 0 0
...................................................................................................ACGATCCATCCATTTGCCATACCCACAGT................................................. 29 3 1 1.00 1 1 0 0 0 0 0
.........................................................................................................CTTCCATTTGCCATACCCACAGA................................................. 23 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................................TCGATTTGCCATACCCACAGT................................................. 21 2 1 1.00 1 0 0 1 0 0 0
............................................................................................................................................................GAAAGCTGGATGAGTTTGCAA 21 0 1 1.00 1 0 0 0 0 0 1
.........................................................................................................CATTCATTTGCCATACCCACAGA................................................. 23 2 1 1.00 1 1 0 0 0 0 0
.....................................................GGTATCGGCAACTGAAAGCCCAACAGG................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0
............................................................................................................CCATTTGCCATACACACAG.................................................. 19 1 1 1.00 1 0 0 0 0 1 0
.........................................................................................................CACCCATTTGCCATACCCACAGTC................................................ 24 3 1 1.00 1 1 0 0 0 0 0
.........................................................................................................CATCCATTTGCCATACCCCCAG.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGGGTATCGGCAACTGAAA........................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................CATCCATTTGCCGTACCCACAG.................................................. 22 1 1 1.00 1 0 0 0 1 0 0
...........................................................................................................TCCATTTGCCCTACCCACAGT................................................. 21 2 2 0.50 1 0 0 0 0 1 0
..........................................................................................................ATACATTTGCCATACCCACAC.................................................. 21 2 2 0.50 1 1 0 0 0 0 0
.........................................................................................................CATCCGTTTGCCATACCCACAC.................................................. 22 2 2 0.50 1 1 0 0 0 0 0
..........................................................................................................AGACATTTGCCATACCCACAG.................................................. 21 2 2 0.50 1 1 0 0 0 0 0
.........................................................................................................CAGCAATTAGCCATACCCACAGG................................................. 23 3 2 0.50 1 0 0 1 0 0 0
...........................................................................................................TCAATTTGCCATACCCACAGTA................................................ 22 3 2 0.50 1 1 0 0 0 0 0
..........................................................................................................AGCTATTTGCCATACCCACA................................................... 20 2 2 0.50 1 1 0 0 0 0 0
.........................................................................................................CATCCATTTGCCATACCAACACT................................................. 23 3 2 0.50 1 0 0 0 1 0 0
.............................................................................................................CATTTGCCATACCCACAGC................................................. 19 1 2 0.50 1 1 0 0 0 0 0
.........................................................................................................CATTCATTTGCCATACCCACAC.................................................. 22 2 2 0.50 1 1 0 0 0 0 0
........................................................................................................CGATCCATTTGCCATACCCACAAC................................................. 24 3 2 0.50 1 1 0 0 0 0 0
..........................................................................................................AGCCATTTGCCATACCCACAC.................................................. 21 2 2 0.50 1 1 0 0 0 0 0
.........................................................................................................CATCCATTTGACATACACACAGT................................................. 23 3 5 0.40 2 0 0 1 0 1 0
...........................................................................................................TCAATTTGCCATACCCATAG.................................................. 20 2 3 0.33 1 1 0 0 0 0 0
............................................................................................................CCAATTGCCATACCCACAGC................................................. 20 2 3 0.33 1 1 0 0 0 0 0
.........................................................................................................CATTCATTTGCCATACCCACACT................................................. 23 3 3 0.33 1 1 0 0 0 0 0
..............................................................................................................ATTTGCCATACCCACAGC................................................. 18 1 3 0.33 1 1 0 0 0 0 0
...........................................................................................................TCCTTTTGCCATACCCACACC................................................. 21 3 4 0.25 1 1 0 0 0 0 0
...............................................TATGTGGGTATCGGCAAC................................................................................................................ 18 2 5 0.20 1 0 0 0 0 0 1
...........................................................................................................TCCATGTGCCATTCCCACAGT................................................. 21 3 6 0.17 1 0 0 0 0 1 0
...........................................................................................................TCAATTTGCCATACCCGCAGT................................................. 21 3 7 0.14 1 0 0 0 0 1 0
...........................................................................................................................................................AGAAAGCTGGGTTAGTTTGC.. 20 3 7 0.14 1 0 0 0 1 0 0
..........................................................................................................AGCTATTTGCCATACCCACAC.................................................. 21 3 8 0.13 1 1 0 0 0 0 0
.............................................................................................................CTTTTGCCATACCCACAGA................................................. 19 2 8 0.13 1 1 0 0 0 0 0
..............................................................................................................AGTTGCCATACCCACAGT................................................. 18 2 9 0.11 1 1 0 0 0 0 0
.............................................................................................................CGTTTGCCATACCCACAGTC................................................ 20 3 13 0.08 1 1 0 0 0 0 0
.............................................................................................................TCTTTGCCATACCCACAG.................................................. 18 2 15 0.07 1 1 0 0 0 0 0
..............................................TCAGCTGGGTATGGGCAAA................................................................................................................ 19 3 20 0.05 1 0 1 0 0 0 0

Anti-sense strand reads

GATTAGTACCCGCACCGCGACGACTGCGACCGCGAGACCCGTATGTAGTCCACCCATAGCCGTTGACTTTCGGGTTGTCCACTCGCTCGAGGGTTTGATTGAGAGGTAGGTAAACGGTATGGGTGTCCATATCGCCGCTCGACTCGCTAAAGCCGCCTTTCGACCTACTCAAACGTT

**************************************************((((((((.(((((.((...........((.(((..((........))..))).))...)).)))))))))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total V041

embryo

 V056

head

 M046

female body
.........................................................................................................................................GTCGCCTCGCTAAAGCCG...................... 18 2 3 0.33 1 1 0 0
........................................................................................................................................GCTAGACTCGATAAAGCCG...................... 19 2 9 0.11 1 0 1 0
...........................................................................................................AGGTAAAGGGGATGGGTG.................................................... 18 2 16 0.06 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droMoj3 scaffold_6540:4746485-4746661 + dmo_1815 confident CTAATCATGGGCGTGGCGCTGCTGACGCTGGCGCTCTGGGCATACATCAGGTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAGCCCAACAGGTGAG------CGAGCTCCC--------------A----AACTAA---CT-----CTCCATCCATTTGCCATACCCACAGGTATAGCGGCGAGCTGAGCGATTTCGGCGGAAAGCTGGATGAGTTTGCAA
droVir3 scaffold_13047:750738-750910 + dvi_68 confident CTGGTCATGGGTGTAGCGTTGCTGACGCTGGCACTCTGGGCGTACATTAGGTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----AC------TGAGCTTCC--------------A----AACTAA---TT-----CTCAATCCATTTGCCATACCCACAGATATAGCGGTGAGTTGAGCGACTTTGGTGGCAAGCTGGACGAATTTGCAA
droGri2 scaffold_14906:5563611-5563770 - CTGGTCATGGGTGTGGCGCTGCTAACACTGGCACTCTGGGCCTACATAAGGTGACTCTCCA----ATA-----------------------------------ACT------CT---------------------------------------------------------------TGGCTA-----------------------------------------AACATAATCACTA-----AACCGA---TT--C---CATATTC-----------GTATAGATATAGCGGCGAGCTGAGCGACTTTGGTGGCAAGCTGGACGACTTTGCCA
droWil2 scf2_1100000004902:9643172-9643331 - CTGGTTATGGGCGTGGCCCTACTGACCCTTGCCCTGTGGTCTTACATTAGGTAAGAGTTAA----T-------------------------------------------------------------------------------------------------CGAAT--------------------------GTTCGTAT-------------------------AAACATTT---ATTGAATTGG---CT--G---CTTTTATT----------TTACAGATACAGCGGTGAGTTGAGCGACTTTGGTGGCAAGCTGGATGACTTTGCCA
dp5 2:1779221-1779388 - CTGGTGATGGGCGTAGCCCTGCTGACGCTTGCACTCTGGGCGTACATCAGGTAAGAGCATTC-----------------------------------------------------------------------------------------------------GTAAA--------------------------ACCCGAAA-------------------------AAAGATTTCCCATCCAACTGA---GAGTCTCCTCGATCCA----------TTACAGGTACAGCGGCGAGTTGAGCGATTTCGGTGGCAAATTGGATGAGTTTGCCA
droPer2 scaffold_7:1932990-1933157 - CTGGTGATGGGCGTAGCCCTGCTGACGCTTGCACTCTGGGCGTACATCAGGTAAGAGCATTC-----------------------------------------------------------------------------------------------------GTAAA--------------------------ACCCGAAA-------------------------AGAGATTTCCCATCCAACTGA---GAGTCTCCTCGATCCA----------TTACAGGTACAGCGGCGAGTTGAGCGATTTCGGTGGCAAATTGGATGAGTTTGCCA
droAna3 scaffold_13340:4715779-4715938 - CTTGTGATGGGCGTGGCGCTGCTAACGCTGGCCCTATGGGCTTACATCAGGTAAGATTAAGAA--A----------------------------------------------------------------------------------------------------------------------------------------------------TAACCCTTTGTAGAAATATATCCT----AAG---AAAC---C---ATTATCAT----------TTACAGATACAGTGGCGAGCTGAGCGACTTTGGCGGCAAGTTGGATGACTTTGCAA
droBip1 scf7180000396359:474012-474176 + CTTGTGATGGGAGTGGCGTTGCTAACGCTAGCTCTATGGGCATACATCAGGTAAGTTTAAAAA--A-------------------------------------A----TACT------------------------------------------------------------------------------------------------------TATTGTTAAAAA---AATATTAAA----ACTTAC---CTCCA---CTTCTCCT----------TTACAGATACAGTGGAGAGCTGAGCGACTTTGGTGGCAAGCTGGACGACTTCGCAA
droKik1 scf7180000302388:1746441-1746626 - CTGGTCATGGGCGTGGCTCTGCTCACGCTGGCTTTGTGGGCCTATATCAGGTGAGTGTAGTAC----ATTTTTTGATCGGACTTATGTCTCTACCTCCTACTTG-----ACTCC--TTG------------------------------------------------------------------TGACTGA---------------------------------------------------CC---AATA---T---CCTTTCAT----------TTTCAGATATAGCGGCGAGCTGAGTGACTTTGGCGGCAAGTTGGATGATTTTGCCA
droFic1 scf7180000454106:1853720-1853875 - TTGGTTATGGGAGTCGCTCTGCTCACGCTGGCTTTGTGGGCCTACATTAGGTATGTTCTTATA----------------------------------------TGG------CT---------------------------------------------------------------ACGTTA----------------------------------------GACGATCA-----CT----AAT---CATT---T---AATTTCCT----------CTTTAGATATAGTGGCGAACTGAGCGACTTTGGTGGCAAGTTGGATGACTTTGCCA
droEle1 scf7180000491194:509212-509290 + AC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCACT----ATC---GATC---T---CATTTCCA----------TTTCAGATATAGCGGCGAGCTGAGCGATTTCGGTGGCAAGTTGGATGAGTTTGCCA
droRho1 scf7180000779488:553376-553587 + CTGGTCATGGGAGTGGCGCTGCTTACATTGGCTCTGTGGGCCTACATCAGGTAGGTTATTTT----------------------------------------GA--------------GGGGAGCCATTACAT--------TTT-----------------TCTTAAAAATAGGGCAAGGTCTGGCCATTAGTTGTTAATCCGGTGGTTTCACA-------------------TTGCT----ATT---TATC---T---CTTTTTTA----------TTATAGATACAGCGGCGAGCTGAGCGATTTTGGTGGCAAGTTGGATGATTTTGCCA
droBia1 scf7180000302402:4234745-4234800 + CTGGTCATGGGTGTGGCACTGCTGACGCTGGCTCTGTGGGCCTACATCAGGTGGGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415310:684862-685088 - CTGGTCATGGGTGTGGCGCTGCTCACGCTGGCTCTGTGGGCCTACATAAGGTGGGTTTAGATA----------------------------------------GGGATTACATAGCGTGACGGGTTGCACTTCTATTGTTCCCCACTCAAAGCTATATTACCTTTTGAAAATTGG----------TAACTGAAACTAAATGCAAATACTC----------------------------------------TA---C---CCTCTCTA----------TTTTAGATATAGCGGCGAGCTGAGTGACTTTGGCGGCAAGTTGGATGACTTTGCTA
droEug1 scf7180000409881:182755-182963 + CTGATTATGGGTGTGGCGCTGCTAACGCTGGCTCTGTGGGCCTATATCAGGTAAGTTCTATT----------------------------------------GGAAAATACTCT--TTGAGAAATTGCAATTT--------TTC-----------------ACTGAGAAAAAAGTTAATTGTTTAGAATTAATTGATTATTTAAATACCC----------------------------------------T----A---TATCTTCA----------TTTCAGATATAGCGGTGAGCTTAGTGACTTTGGGGGCAAGTTGGATGACTTTGCAA
dm3 chr3R:20459043-20459204 + CTGGTTATGGGTGTGGCGCTTCTAACGCTGGCTCTGTGGGCCTACATTAGGTAGGTTGATTTAGCT----------------------------------------------------------------------------------------------------------------------------------------------------TGAGCTTTTGATGATAATTTTGCC----AAC---GATG---T---TTTATCAA----------TTCCAGATATAGCGGAGAGCTCAGCGACTTTGGCGGCAAGTTGGATGACTTTGCAA
droSim2 3r:19988183-19988344 + TTGATCATGGGTGTGGCGCTTCTAACGCTGGCTCTGTGGGCTTACATTAGGTAGGTTGATGCAGCT----------------------------------------------------------------------------------------------------------------------------------------------------TGAGCTTTTGATGATAATCTTGCC----AAC---GATC---A---CTTTTCCA----------TTCCAGATATAGCGGAGAGCTCAGCGATTTTGGCGGCAAGTTGGATGACTTTGCAA
droSec2 scaffold_0:20793428-20793589 + TTGATCATGGGTGTGGCGCTTCTAACGCTGGCTCTGTGGGCCTACATTAGGTAGGTTGATGCAGCT----------------------------------------------------------------------------------------------------------------------------------------------------TGAGCTTTTGATGATAATCTTGCC----AAC---GATC---A---CTTTTCCA----------TTCCAGATATAGCGGAGAGCTCAGCGACTTTGGCGGCAAGTTGGATGACTTTGCAA
droYak3 3R:26038688-26038849 - CTGGTCATGGGTGTGGCGCTGCTCACGCTGGCTCTGTGGGCCTACATCAGGTAGGTTGATAA---C----------------------------------------------------------------------------------------------------------------------------------------------------TGAGTTTTGGTTGAGAATCTTGCC----AACTAA---CTTTA---CTTTTGAA----------TTGCAGATATAGCGGAGAGCTCAGTGACTTTGGCGGCAAGTTGGATGACTTTGCAA
droEre2 scaffold_4820:7599484-7599645 - CTGGTCATGGGTGTGGCGCTACTCACGCTGGCTCTGTGGGCTTACATCAGGTAGGTTGATAA---T----------------------------------------------------------------------------------------------------------------------------------------------------TGAGCTCTGGATGATAATCTTGCC----AACTAA---CTCTT---CTTTTGAA----------TTGCAGATATAGCGGAGAGCTCAGTGACTTTGGCGGCAAGTTGGATGACTTTGCTA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
CTAATCATGGGCGTGGCGCTGCTGACGCTGGCGCTCTGGGCATACATCAGGTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAGCCCAACAGGTGAG------CGAGCTCCC--------------A----AACTAA---CT-----CTCCATCCATTTGCCATACCCACAGGTATAGCGGCGAGCTGAGCGATTTCGGCGGAAAGCTGGATGAGTTTGCAASizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
.....................................................................................................................................................................................................................................................................CATCCATTTGCCATACCCACAG..................................................221505.005051354010113081
.....................................................................................................................................................................................................................................................................CATCCATTTGCCATACCCACAGT.................................................231320.00320173614282196
.....................................................................................................................................................................................................................................................................CATCCATTTGCCATACCCACA...................................................21198.009842214481
.......................................................................................................................................................................................................................................................................TCCATTTGCCATACCCACAGT.................................................21193.00931913613411
.....................................................................................................................................................................................................................................................................CATCCATTTGCCATACCCACAGA.................................................23156.005613400390
.......................................................................................................................................................................................................................................................................TCCATTTGCCATACCCACAG..................................................20155.005522232251
.....................................................................................................................................................................................................................................................................CATCCATTTGCCATACCCACAGC.................................................23147.00470000470
......................................................................................................................................................................................................................................................................ATCCATTTGCCATACCCACAG..................................................21132.00322201180
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAGCC........................................................................................................................................23128.00282102158
.....................................................................................................................................................................................................................................................................CATCCATTTGCCATACCCAC....................................................20128.002811001160
......................................................................................................................................................................................................................................................................ATCCATTTGCCATACCCACAGT.................................................22125.00258301130
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAGC.........................................................................................................................................22119.00191003123
.....................................................................................................................................................................................................................................................................CATCCATTTGCCATACCCACAC..................................................22116.00161000150
.......................................................................................................................................................................................................................................................................TCCATTTGCCATACCCACAGC.................................................21112.00120000120
.......................................................................................................................................................................................................................................................................TCCATTTGCCATACCCACAGA.................................................21110.0010700030
.........................................................................................................................................................................................................................................................................CATTTGCCATACCCACAGT.................................................1916.006011040
......................................................................................................................................................................................................................................................................ATCCATTTGCCATACCCACA...................................................2016.006500010
.........................................................................................................................................................................................................................................................................CATTTGCCATACCCACAG..................................................1816.006400110
....................................................................................................................................................................................................................................................................CCATCCATTTGCCATACCCACAGT.................................................2416.006000060
......................................................................................................................................................................................................................................................................ATCCATTTGCCATACCCACAC..................................................2116.006300030
......................................................................................................................................................................................................................................................................ATCCATTTGCCATACCCACAGC.................................................2215.005000050
.....................................................................................................................................................................................................................................................................CATCCATTTGCCATACCCACAA..................................................2215.005300020
....................................................................................................................................................................................................................................................................CCATCCATTTGCCATACCCACAG..................................................2314.004000040
..................................................................................................................................................................................................................................................................CTCCATCCATTTGCCATACCCACAG..................................................2514.004400000
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAA............................................................................................................................................1914.004300001
......................................................................................................................................................................................................................................................................ATCCATTTGCCATACCCACAGA.................................................2214.004400000
.......................................................................................................................................................................................................................................................................TCCATTTGCCATACCCACAGTA................................................2213.003000030
........................................................................................................................................................................................................................................................................CCATTTGCCATACCCACAGT.................................................2013.003210000
........................................................................................................................................................................................................................................................................CCATTTGCCATACCCACAG..................................................1913.003100020
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAGCCC.......................................................................................................................................2412.002000011
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAG..........................................................................................................................................2112.002100001
.....................................................................................................................................................................................................................................................................CATCCATTTGCCATACCCACACT.................................................2312.002000020
.......................................................................................................................................................................................................................................................................TCCATTTGCCATACCCACAGTC................................................2211.001000001
......................................................................................................................................................................................................................................................................ATCCATTTGCCATACCCACACT.................................................2211.001000010
.....................................................................................................................................................................................................................................................................CATCCATTTGCCATACCCACACA.................................................2311.001000010
....................................................................................................................................................................................................................................................................CCATCCATTTGCCATACCCAC....................................................2111.001000010
.............TGGCGCTGCTGACGCTGGCGCTCTGGGCA...................................................................................................................................................................................................................................................................................................2911.001000010
......................................................................................................................................................................................................AACAGGTGAG------CGAGCTCCC--------------................................................................................................1911.001000010
..........................................................................................................................................................................................................GGTGAG------CGAGCTCCC--------------A----AACTAA---CT-----CTC........................................................................2711.001100000
.......................................................................................................................................................................................................................................................................TCCATTTGCCATACCCACAGAA................................................2211.001000010
...................................................TGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAGCC........................................................................................................................................2211.001000010
......................................................................................................................................................................................................................................................................ATCCATTTGCCATACCCACAT..................................................2111.001000010
......................................................................................................................................................................................................................................................................ATCCATTTGCCATACCCACAGTA................................................2311.001000010
............................................................................................................................................................................................................TGAG------CGAGCTCCC--------------A----AACTAA---CT-----CT.........................................................................2411.001010000
........................................................................................................................................................................................................................................................................CCATTTGCCATACCCACAGA.................................................2011.001000010
......................................................................................................................................................................................................AACAGGTGAG------CGAGCTCC...............................................................................................................1811.001000010
.....................................................................................................................................................................................................................................................................CATCCATTTGCCATACCCA.....................................................1911.001000010
..............................................................................................................................................................................................................................................................................................................GATTTCGGCGGAAAGCTGGAT..........2111.001000001
..........................................................................................................................................................................................................................................................................ATTTGCCATACCCACAGT.................................................1811.001000010
........................................................................................................................................................................................................................................................................CCATTTGCCATACCCACAGC.................................................2011.001000010
....................................................................................................................................................................................................................................................................CCATCCATTTGCCATACCCACA...................................................2211.001100000
.......................................................................................................................................................................................................................................................................TCCATTTGCCATACCCACACT.................................................2111.001100000
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGA.............................................................................................................................................1811.001100000
....................................................................................................................................................................................................................................................................CCATCCATTTGCCATACC.......................................................1811.001000010
...................................................................................................................................................................................................................................................................TCCATCCATTTGCCATACCCACAG..................................................2411.001000010
.....CATGGGCGTGGCGCTGCTG.....................................................................................................................................................................................................................................................................................................................1911.001100000
...........................................................................................................................................................................................................................................................CT-----CTCCATCCATTTGCCATAC........................................................2111.001100000
.......................................................................................................................................................................................................................................................................TCCATTTGCCATACCCACAC..................................................2011.001000010
.....................................................GGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAGCC........................................................................................................................................2011.001000010
...........................................................................................................................................................................................ACTGAAAGCCCAACAGGTGAG------.......................................................................................................................2111.001010000
............................TGGCGCTCTGGGCATACATCAG...........................................................................................................................................................................................................................................................................................2211.001010000
.......................GACGCTGGCGCTCTGGGCA...................................................................................................................................................................................................................................................................................................1911.001100000
......................................................................................................................................................................................................................................................................ATCCATTTGCCATACCCACAGAA................................................2311.001100000
............................................................................................................................................................................................................TGAG------CGAGCTCCC--------------A----AACTAA---C.................................................................................2111.001100000
............................................................................................................................................................................................................TGAG------CGAGCTCCC--------------A----AACTAA---CT-----C..........................................................................2311.001000100
..............GGCGCTGCTGACGCTGGCGCTCTGGGT....................................................................................................................................................................................................................................................................................................2711.001100000
......................................................................................................................................................................................................................................................................ATCCATTTGCCATACCCACACAA................................................2311.001100000
..................................................................................................................................................................................................................................................AACTAA---CT-----CTCCATCCATTTG..............................................................2111.001100000
........................................................................................................................................................................................................................................................................................................................GAAAGCTGGATGAGTTTGCAA2111.001000001
.....................................................GGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAGCCCAACAGG.................................................................................................................................2711.001000010
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAA...........................................................................................................................................2011.001000010
.........................................................................................................................................................................................................................................................................CATTTGCCATACCCACAGC.................................................1920.501000010
..........................................................................................................................................................................................................................................................................ATTTGCCATACCCACAGC.................................................1830.331000010
droVir3
CTGGTCATGGGTGTAGCGTTGCTGACGCTGGCACTCTGGGCGTACATTAGGTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----AC------TGAGCTTCC--------------A----AACTAA---TT-----CTCAATCCATTTGCCATACCCACAGATATAGCGGTGAGTTGAGCGACTTTGGTGGCAAGCTGGACGAATTTGCAASizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.....................................................................................................................................................................................................................................................................AATCCATTTGCCATACCCACAG..................................................2212060.002060512487134212100021130433657562938283256379368901055511814613181911560000000000000000014231901427859391721233121118437
.....................................................................................................................................................................................................................................................................AATCCATTTGCCATACCCACAGT.................................................231811.00811114741320010010753814382420843432181634364950186267851023300100000010021010043311101910121123328100010
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCA......................................................................................................................................251650.00650720111000011000001010000102100211012000000010000000100001001220122303011010787721198100001
.....................................................................................................................................................................................................................................................................AATCCATTTGCCATACCCACA...................................................211436.00436561873100000000022835148015120412851012513022020010000000000010000042022000843233025112422
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACT........................................................................................................................................231377.003771327811161614501032340200213034262705001111001011000142223101143535055456211614221224845103
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTC.......................................................................................................................................241214.002143720000151300001030121301010310302010011000000000000000101202800000022391316313000200
.......................................................................................................................................................................................................................................................................TCCATTTGCCATACCCACAGT.................................................211139.0013900140000000000093495414412421071121621101032000000000000000000127100100110012000000
......................................................................................................................................................................................................................................................................ATCCATTTGCCATACCCACAG..................................................211133.0013300751000000000070153301403325731100000101000000000000000000001000100101001100000
.....................................................................................................................................................................................................................................................................AATCCATTTGCCATACCCACAGA.................................................231130.00130003701000000010544241035032464421200000000000000000000001000030015040120111011013
......................................................................................................................................................................................................................................................................ATCCATTTGCCATACCCACAGT.................................................221124.00124002140100000100904913103218516742000010100000000000000000000012500000123200400000
.....................................................................................................................................................................................................................................................................AATCCATTTGCCATACCCAC....................................................20185.0085123200100000000822430031100001130210010100000000000000000000005100000000000000000
.......................................................................................................................................................................................................................................................................TCCATTTGCCATACCCACAG..................................................20169.006900260000000000041053201300002242800101001000000000000000000002000000000001000000
.....................................................................................................................................................................................................................................................................AATCCATTTGCCATACCCACAC..................................................22152.005210231000000000021110003002141020100000100000000000000000000012000300001000000000
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAA...........................................................................................................................................20151.005100400000020000000210001000101303010000020000000000000000000032500000000010000010
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAA..........................................................................................................................................21144.004400800000030000042300017000210000000000000000000000000000000001300000000000000000
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAA.....................................................................................................................................26141.00410100211010000000000000101232101010502100000000000000000000000005101040004000000
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAAC.........................................................................................................................................22137.003700300111010000010101200001010110000000100000000000000000000111330000011000000000
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAAT....................................................................................................................................27135.00350230000000000000000000000131010100001000000000000000000000000001010164101500011
......................................................................................................................................................................................................................................................................ATCCATTTGCCATACCCACA...................................................20134.003410270000000000011010000000010000000000000000000000000000000002000000000000000000
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAA............................................................................................................................................19131.003100400400010000000100000000000203001000000000000000000000000001300000002000000000
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGA.............................................................................................................................................18123.00230031000000000000000000010010000000000000000000000000000000030000001064120000000
......................................................................................................................................................................................................................................................................ATCCATTTGCCATACCCACAGA.................................................22123.00230020000000000020020101000330220100001000000000000000000000001100000000000000001
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----AC------T......................................................................................................................31117.00170000000000000000000000000000000000000000000000000042111000800000000000000000000
.....................................................................................................................................................................................................................................................................AATCCATTTGCCATACCCA.....................................................19116.00160070000000000001001000202000010100100000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................CATTTGCCATACCCACAG..................................................18114.00140060000000000011200000001000002000100000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................CAATCCATTTGCCATACCCACAG..................................................23114.001400110000000000000001200000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................TCCATTTGCCATACCCACAGA.................................................21114.00140040000000000020000002000001210000000000000000000000000000000100000100000000000
.........................................................................................................................................................................................................................GCTTCC--------------A----AACTAA---TT-----CTC........................................................................18114.001401100000000000000000000000000000000000000000000000000000001200000000000000000000
........................................................................................................................................................................................................................................................................CCATTTGCCATACCCACAG..................................................19114.00140060000000000002020000000010000000001000000000000000000000000000000002000000000
.....................................................................................................................................................................................................................................................................AATCCATTTGCCATACCCACAGTC................................................24113.00130000020000000001000000100000123101000000000000000000000000000100000000000000000
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----...............................................................................................................................28110.00100000000000000000000000000000000000100120000000000000000000000000200000100010002
.........................................................TCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----AC------TGA....................................................................................................................2619.0090000000000000000000000000000000000100000000000000001000000000000000000021200002
.........................................................................................................................................................................................................................................................................CATTTGCCATACCCACAGT.................................................1919.0090040000000000000000011000100000000001000000000000000000000001000000000000000000
........................................................................................................................................................................................................................................................................CCATTTGCCATACCCACAGT.................................................2019.0090030000000000000020000000010001100000000000000000000000000001000000000000000000
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----AC------TGAGCTTCC--------------A----AACT.......................................................................................4418.0080000000000000000000000000000000000000000010000000010211010100000000000000000000
...................................................TGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACT........................................................................................................................................2217.0070060000000000000000000000000000000000000000000000000000000000000010000000000000
..........................................................CGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----AC------TGA....................................................................................................................2517.0071210000000000000000000000000000000000000000000000000000000000000000010020000000
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----AC------TGA....................................................................................................................3316.0060000000000000000000000000000000000000000000000000020011001100000000000000000000
.....................................................................................................................................................................................................................................................................AATCCATTTGCCATACCCACAA..................................................2225.50110001000000000000001000000000010000120000000000000000000000000000010000001001011
..........................................................................................................................................................................................................................................................................ATTTGCCATACCCACAGA.................................................1815.0050020000000000000000000000001000000000000000000000000000000000000000000002000000
.........................................................TCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----AC------.......................................................................................................................2315.0050000000000000000000000000000000000000000000000000000000000000000000005000000000
......................................................................................................................................................................................................................................................AA---TT-----CTCAATCCATTTGCCATACCCACAG..................................................2915.0050030000000000010000000000100000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................AATCCATTTGCCATACCCACAT..................................................2215.0050000000000000000001000200000000000000000000000000000000000010000000010000000000
........................................................................................................................................................................................................................................................................CCATTTGCCATACCCACA...................................................1814.0040040000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................GGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----AC------.......................................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000020002000000
.....................................................................................................................................................................................................................................................................AATCCATTTGCCATACCCACAGC.................................................2314.0040001000000000000001000000000000100000000000000000100000000000000000000000000000
..........................................................CGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----AC------TGAGC..................................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000101000000000000200
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----AC------TGAGC..................................................................................................................3514.0040000000000000000000000000000000000000000000000000001000100200000000000000000000
......................................................................................................................................................................................................................................................................ATCCATTTGCCATACCCACAC..................................................2114.0040040000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................T-----CTCAATCCATTTGCCATACCCACA...................................................2513.0030030000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................AA---TT-----CTCAATCCATTTGCCATACCCA.....................................................2613.0030020000000000000000000000001000000000000000000000000000000000000000000000000000
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----AC------TGAGCTT................................................................................................................3713.0030000000000000000000000000000000000000000000000001110000000000000000000000000000
.................GTTGCTGACGCTGGCACTCTGGGCGT..................................................................................................................................................................................................................................................................................................2613.0030010000000000000000000000000000000000000000000000000000000000000000000002000000
............................................................GCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----AC------.......................................................................................................................2013.0030100000000000000000000000000000000000000000000000000000000000000000000200000000
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----AC------.......................................................................................................................3013.0030000000000000000000000000000000000000000000000000110010000000000000000000000000
......................................................GTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACT........................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000200100000
.........................................................................................................................................................................................................................................................................CATTTGCCATACCCACAGA.................................................1913.0030030000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................TCCATTTGCCATACCCACAGTC................................................2213.0030000000000000000000000000001011000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................AGTTGAGCGACTTTGGTGGCAAGCTG.............2613.0030000000000000000000000000000030000000000000000000000000000000000000000000000000
.....................................................GGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAAC.........................................................................................................................................1913.0030100000000000000000000000000000000000000000000000000000000000000000020000000000
.......................................................................................................................................................................................................................................................................TCCATTTGCCATACCCACAC..................................................2022.5050011000000000000001002000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................ATCCATTTGCCATACCCAC....................................................1912.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................CAATCCATTTGCCATACCCACAC..................................................2312.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................CTAA---TT-----CTCAATCCATTTGCC............................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000020000000000
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----AC------TGAG...................................................................................................................3412.0020000000000000000000000000000000000000000000000000000010000100000000000000000000
.................GTTGCTGACGCTGGCACTCTGGG.....................................................................................................................................................................................................................................................................................................2312.0021000000000000000000000000000000000000000000000000000000000000000000000010000000
........................................................................................................................................................................................................................................................................CCATTTGCCATACCCACAGA.................................................2012.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................CGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----...............................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000002000000000
.....................................................................................................................................................................................................................................................................AATCCATTTGCCATACCCACAGTA................................................2412.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................AATCCATTTGCCATACCCACACC.................................................2312.0020010000000000000000000000000000000100000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................AATCCATTTGCCATACCCACAGAA................................................2412.0020000000000000000000000000000000000000000000000001000000000000000001000000000000
....................................................GGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACT........................................................................................................................................2112.0020000000000000000000000000000000001000000000000000000000000000000000000000100000
........................................................................................................................................................................................................TA----AC------TGAGCTTCC--------------A----AACTAA---TT-----CT.........................................................................2412.0020000000000000000000000100000000000100000000000000000000000000000000000000000000
........................................................ATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAAT....................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000200000000
.............................................................................................................................................................................................................................................................................................ATAGCGGTGAGTTGAGCGACTTTGGT......................2612.0020011000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................TCCATTTGCCATACCCACAGAA................................................2212.0020010000000000000000000100000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................CTCAATCCATTTGCCATACCCACAG..................................................2512.0021010000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................CAATCCATTTGCCATACCCACAGT.................................................2412.0020000000000000000000000000000100000001000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................AATCCATTTGCCATACCCACC...................................................2112.0020000000000000000000000000000000000000000000000000000000000002000000000000000000
...................TGCTGACGCTGGCACTCTGGGC....................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000200000000
............................................................................................................................................................................................................................................................T-----CTCAATCCATTTGCCATACCCACAG..................................................2612.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................CTTCC--------------A----AACTAA---TT-----CTCAATCCATTTGC.............................................................2812.0020000000000000000000000000000000000000000000000000000000000000002000000000000000
..........................................................CGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----AC------.......................................................................................................................2212.0020100000000000000000000000000000000000000000000000000000000000000000001000000000
..............................................................A----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----AC------TGAGCT.................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000200000000000000000
..............................................................A----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----AC------TGA....................................................................................................................2112.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................A---TT-----CTCAATCCATTTGCCATACCCA.....................................................2512.0020011000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................ATCCATTTGCCATACCCACAGTC................................................2312.0020000000000000000000000000000001100000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................ATTTGCCATACCCACAGT.................................................1812.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................CTAA---TT-----CTCAATCCATTTGCCATACCC......................................................2712.0020200000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................CAATA----AC------TGAGCTTCC--------------A----AACT.......................................................................................2112.0020000000000000000000000000000000000000000000000000000000200000000000000000000000
.........................................................TCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----AC------TGAGC..................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000001100000000000
....................................................................................................................................................................................................................................................................CAATCCATTTGCCATACCCAC....................................................2112.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................ATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCA......................................................................................................................................1912.0021000000000000000000000000000000000000000000000000000000000000000000000001000000
.......................................................................................................................................................................................................................................................A---TT-----CTCAATCCATTTGCCATACCCACAG..................................................2812.0020010000000000000000000100000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................TCAATCCATTTGCCATACCCACAG..................................................2412.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................CAATCCATTTGCCATACCCACA...................................................2212.0020010000000000000000000000000001000000000000000000000000000000000000000000000000
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAAC....................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000200000000000000
......................................................................................................................................................................................................................................................................ATCCATTTGCCATACCCACAA..................................................2121.5030000000000000000000000000000000000100000000000000000000000000000010000000000010
........................................................................................................................................................................................................................................................................CCATTTGCCATACCCACAC..................................................1921.5030030000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----AC------TGAGCTTC...............................................................................................................3811.0010000000000000000000000000000000000000000000000000000000000100000000000000000000
.....................................................................................................................................................................................................CAATA----AC------TGAGCTTCC--------------A----AACTAA---T.................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000100000000000000000
...................................................TGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTC.......................................................................................................................................2311.0010000000000000000000000010000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................CAATCCATTTGCCATACCCACAGAA................................................2511.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................TGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCA......................................................................................................................................2411.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
..................TTGCTGACGCTGGCACTCTGGG.....................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000010
.....................................................GGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCA......................................................................................................................................2211.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................GCTTCC--------------A----AACTAA---TT-----CTCA.......................................................................1911.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................GCTTCC--------------A----AACTAA---TT-----CTCAATCCAT.................................................................2511.0010000000000000000000000000000100000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................TCAATCCATTTGCCATACCCACAGT.................................................2511.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----AC------TGAGCTTCC--------------A----AAC........................................................................................4311.0010000000000000000000000000000000000000000000000000000000000100000000000000000000
.....................................................................................................................................................................................................................................................................................................GAGTTGAGCGACTTTGGTGGCAAGCT..............2611.0010000000000000000000000000000000000000000000000000000000000000100000000000000000
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----AC------TGAGCT.................................................................................................................3611.0010000000000000000000000000000000000000000000000000000000001000000000000000000000
..................................................................................................................................................................................................................................................................................................GGTGAGTTGAGCGACTTTGGT......................2111.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................T-----CTCAATCCATTTGCCATACCCACAGT.................................................2711.0010000000000000000000100000000000000000000000000000000000000000000000000000000000
.......................................................TATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----...............................................................................................................................2311.0010000000000000000000000100000000000000000000000000000000000000000000000000000000
....................................................GGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAAC.........................................................................................................................................2011.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................CAATCCATTTGCCATACCCA.....................................................2011.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................TAA---TT-----CTCAATCCATTTGCCA...........................................................2111.0010000000000000001000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................GCTTCC--------------A----AACTAA---TT-----CTCAATCCATTTGCCATACCCACAGT.................................................4111.0010000000000000000000000000000000000000000000001000000000000000000000000000000000
...........................CTGGCACTCTGGGCGTACATTAG...........................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000100000000
.......................................................................................................................................................................................................................................................................TCCATTTGCCATACCCACAGTA................................................2211.0010000000000000000000000000000100000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................CAATA----AC------TGAGCTTCC--------------A----AA.........................................................................................1911.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.TGGTCATGGGTGTAGCGTTGCTGACGCTG...............................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000100000000000
.......................................................................................................................................................................................................................................................................TCCATTTGCCATACCCACAGC.................................................2111.0010000000000000000000100000000000000000000000000000000000000000000000000000000000
..............................................................A----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----AC------TGAGC..................................................................................................................2311.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................GCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----AC------TGA....................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................A----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----AC------TGAGCTTCC--------------................................................................................................2711.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................AATCCATTTGCCATACCCACAGTCT...............................................2511.0010000000000000000000000100000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................GGTGAGTTGAGCGACTTTGGTGGC...................2411.0010000000000010000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................CTCAATCCATTTGCCATACCCACAGT.................................................2611.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................TCCATTTGCCATACCCACA...................................................1911.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGG.............................................................................................................................................1821.0020010000000000000000000000010000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................AACTCAATA----AC------TGAGCTTCC--------------A----AAC........................................................................................2411.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
..............................................................A----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----AC------TGAGCTT................................................................................................................2511.0010000000000000000000000100000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................A---TT-----CTCAATCCATTTGCCATACCCACAC..................................................2811.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.............TAGCGTTGCTGACGCTGGCACTCTGGGCG...................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000001000000000000000000000000
.....................................................................................................................................................................................................................................................TAA---TT-----CTCAATCCATTTGCCATACCCA.....................................................2711.0010000000000000010000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................GTTGAGCGACTTTGGTGGCAAGCTGGA...........2711.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................T-----CTCAATCCATTTGCCATACCCAC....................................................2411.0010000000000000000000000000000000000000000000000000000000000100000000000000000000
...................................................................................................................................................................................................................................................ACTAA---TT-----CTCAATCCATTTGCCATACC.......................................................2711.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................ACTAA---TT-----CTCAATCCATT................................................................1811.0010000000000000000000000000000000000000000000000000000000000000001000000000000000
.............TAGCGTTGCTGACGCTGGCACTC.........................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000010000
.......................................................................................................................................................................................................ATA----AC------TGAGCTTCC--------------A----AACT.......................................................................................1911.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................C--------------A----AACTAA---TT-----CTCAATCCATTTG..............................................................2311.0010000000000000010000000000000000000000000000000000000000000000000000000000000000
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----AC------TGAGAA.................................................................................................................3611.0010000000000000000000000000000000000000000000000000001000000000000000000000000000
......................................................GTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTC.......................................................................................................................................2011.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................TGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAAC.........................................................................................................................................2111.0010000000000100000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................ATA----AC------TGAGCTTCC--------------A----AACTAA---TT-----CTC........................................................................2611.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTA.......................................................................................................................................2411.0010000000000000000000000000001000000000000000000000000000000000000000000000000000
..................................................GTGGGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTG..............................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001
............................................................GCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----AC------TGAGCTT................................................................................................................2711.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................ACTAA---TT-----CTCAATCCATTTGCCA...........................................................2311.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................ATCCATTTGCCATACCCACAGAA................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000001000000000
........................................................................................................................................................................................................TA----AC------TGAGCTTCC--------------A----AACT.......................................................................................1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
............................................................GCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACTCAATA----AC------TGAGCTTCC--------------................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000100000000000000000000
.............................................................................................................................................................................................................................................................................................ATAGCGGTGAGTTGAGCGA.............................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010
.....................................................................................................................................................................................................................................................................AATCCATTTGCCATACCCACCC..................................................2211.0010000000000000001000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................ATCCATTTGCCATACCCA.....................................................1811.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................GGTATCGGCA----------------------------------------------------------------------------------------------------------------------------ACTGAAAACT........................................................................................................................................2011.0010000000000000000010000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................CTCAATCCATTTGCCATACCCACAGA.................................................2611.0010000000000000000000000000100000000000000000000000000000000000000000000000000000
droGri2
CTGGTCATGGGTGTGGCGCTGCTAACACTGGCACTCTGGGCCTACATAAGGTGACTCTCCA----ATA-----------------------------------ACT------CT---------------------------------------------------------------TGGCTA-----------------------------------------AACATAATCACTA-----AACCGA---TT--C---CATATTC-----------GTATAGATATAGCGGCGAGCTGAGCGACTTTGGTGGCAAGCTGGACGACTTTGCCASizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
..GGTCATGGGTGTGGCGCTGCTAACA..................................................................................................................................................................................................................................................................................................................2511.00110
...........................CTGGCACTCTGGGCCTACATAAG...........................................................................................................................................................................................................................................................................................2311.00110
......ATGGGTGTGGCGCTGCTAA....................................................................................................................................................................................................................................................................................................................1911.00101
droWil2
CTGGTTATGGGCGTGGCCCTACTGACCCTTGCCCTGTGGTCTTACATTAGGTAAGAGTTAA----T-------------------------------------------------------------------------------------------------CGAAT--------------------------GTTCGTAT-------------------------AAACATTT---ATTGAATTGG---CT--G---CTTTTATT----------TTACAGATACAGCGGTGAGTTGAGCGACTTTGGTGGCAAGCTGGATGACTTTGCCASizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
..........................................................................................................................................................................................................................................................................................GATACAGCGGTGAGTTGAGC...............................2013.00300030
.........................................................................................................................................................................................................................................................................................................................CAAGCTGGATGACTTTGCC.1912.00220000
.................................................................................................................................................................................................................................................................................................................TTTGGTGGCAAGCTGGATGACT......2211.00100001
.........................................................................................................................................................................................................................................TT---ATTGAATTGG---CT--G---CTTTTATT----------TTAC....................................................2711.00100001
....................ACTGACCCTTGCCCTGTGGTC....................................................................................................................................................................................................................................................................................................2111.00101000
............................................................................................................................................................................................................................................................................................TACAGCGGTGAGTTGAGC...............................1811.00100010
...........................................................................................................................................................................................................................................................................................ATACAGCGGTGAGTTGAGCGACTTT.........................2511.00100010
......................................................................................................................................................................................................................................................................................................AGTTGAGCGACTTTGGTGGC...................2011.00100010
...........................................................................................................................................................................................................................................................................................ATACAGCGGTGAGTTGAGCGACTT..........................2411.00100010
......ATGGGCGTGGCCCTACTGACCCTTGC.............................................................................................................................................................................................................................................................................................................2611.00101000
...........................................................................................................................................................................................................................................................................................ATACAGCGGTGAGTTGAGC...............................1911.00100010
......................................................................................................................................................................................................................................................................................................AGTTGAGCGACTTTGGTGG....................1911.00101000
.........................................................................................................................................................................................................................................................................................................TGAGCGACTTTGGTGGCAAGCT..............2211.00100100
....................................................................................................................................................................................................................................................................................................................GGTGGCAAGCTGGATGTGC......19200.05101000
dp5
CTGGTGATGGGCGTAGCCCTGCTGACGCTTGCACTCTGGGCGTACATCAGGTAAGAGCATTC-----------------------------------------------------------------------------------------------------GTAAA--------------------------ACCCGAAA-------------------------AAAGATTTCCCATCCAACTGA---GAGTCTCCTCGATCCA----------TTACAGGTACAGCGGCGAGTTGAGCGATTTCGGTGGCAAATTGGATGAGTTTGCCASizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
.......................................................................................................................................................................................................................................................................................................GTTGAGCGATTTCGGTGG....................1811.0010100000000
...........................................................................................................................................................................................................................................................................................GTACAGCGGCGAGTTGAGC...............................1911.0010100000000
.........GGCGTAGCCCTGCTGACGCTTGC.............................................................................................................................................................................................................................................................................................................2311.0010100000000
..............................GCACTCTGGGCGTACATCAG...........................................................................................................................................................................................................................................................................................2011.0010100000000
..........................................................................................................................................................................................................................................................................................GGTACAGCGGCGAGTTGAGC...............................2011.0010100000000
..........................GCTTGCACTCTGGGCGTAC................................................................................................................................................................................................................................................................................................1911.0010010000000
.................CCTGCTGACGCTTGCACTCTGGGC....................................................................................................................................................................................................................................................................................................2411.0010100000000
.............................................................................................................................................................................................................................................................................................ACAGCGGCGAGTTGAGCGATTTCGGT......................2611.0010010000000
droPer2
CTGGTGATGGGCGTAGCCCTGCTGACGCTTGCACTCTGGGCGTACATCAGGTAAGAGCATTC-----------------------------------------------------------------------------------------------------GTAAA--------------------------ACCCGAAA-------------------------AGAGATTTCCCATCCAACTGA---GAGTCTCCTCGATCCA----------TTACAGGTACAGCGGCGAGTTGAGCGATTTCGGTGGCAAATTGGATGAGTTTGCCASizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
.....................CTGACGCTTGCACTCTGGGCGT..................................................................................................................................................................................................................................................................................................2212.002200000
..............AGCCCTGCTGACGCTTGCACTCTGGGC....................................................................................................................................................................................................................................................................................................2712.002110000
.......................GACGCTTGCACTCTGGGC....................................................................................................................................................................................................................................................................................................1811.001100000
..........................................................................................................................................................................................................................................................................................................................AAATTGGATGAGTTTGCCA1911.001001000
...GTGATGGGCGTAGCCCTGCTGACGCTTGC.............................................................................................................................................................................................................................................................................................................2911.001100000
................................ACTCTGGGCGTACATCAG...........................................................................................................................................................................................................................................................................................1811.001100000
...........................................................................................................................................................................................................................................................................................GTACAGCGGCGAGTTGAGC...............................1911.001000001
droAna3
CTTGTGATGGGCGTGGCGCTGCTAACGCTGGCCCTATGGGCTTACATCAGGTAAGATTAAGAA--A----------------------------------------------------------------------------------------------------------------------------------------------------TAACCCTTTGTAGAAATATATCCT----AAG---AAAC---C---ATTATCAT----------TTACAGATACAGTGGCGAGCTGAGCGACTTTGGCGGCAAGTTGGATGACTTTGCAASizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.....GATGGGCGTGGCGCTGCTAAC...................................................................................................................................................................................................................................................................................................................2113.003010020
CTTGTGATGGGCGTGGCGCTGCTAACGCT................................................................................................................................................................................................................................................................................................................2911.001000010
.TTGTGATGGGCGTGGCGCTGCTAAC...................................................................................................................................................................................................................................................................................................................2511.001000001
......................................................................................................................................................................................................................................................................................................AGCTGAGCGACTTTGGCGGCAAGT...............2411.001010000
..................................................................................................................................................................................................................................................................................................GGCGAGCTGAGCGACTTTGGCGGCA..................2511.001100000
...GTGATGGGCGTGGCGCTGC.......................................................................................................................................................................................................................................................................................................................1911.001010000
................CGCTGCTAACGCTGGCCCTATGGG.....................................................................................................................................................................................................................................................................................................2411.001100000
.......................................................................................................................................................................................................................................................................................................GCTGAGCGACTTTGGCGGCA..................2011.001010000
.TTGTGATGGGCGTGGCGCTGCTAACGC.................................................................................................................................................................................................................................................................................................................2711.001000001
droBip1
CTTGTGATGGGAGTGGCGTTGCTAACGCTAGCTCTATGGGCATACATCAGGTAAGTTTAAAAA--A-------------------------------------A----TACT------------------------------------------------------------------------------------------------------TATTGTTAAAAA---AATATTAAA----ACTTAC---CTCCA---CTTCTCCT----------TTACAGATACAGTGGAGAGCTGAGCGACTTTGGTGGCAAGCTGGACGACTTCGCAASizeHit CountTotal NormTotal
No Reads
droKik1
CTGGTCATGGGCGTGGCTCTGCTCACGCTGGCTTTGTGGGCCTATATCAGGTGAGTGTAGTAC----ATTTTTTGATCGGACTTATGTCTCTACCTCCTACTTG-----ACTCC--TTG------------------------------------------------------------------TGACTGA---------------------------------------------------CC---AATA---T---CCTTTCAT----------TTTCAGATATAGCGGCGAGCTGAGTGACTTTGGCGGCAAGTTGGATGATTTTGCCASizeHit CountTotal NormTotal
No Reads
droFic1
TTGGTTATGGGAGTCGCTCTGCTCACGCTGGCTTTGTGGGCCTACATTAGGTATGTTCTTATA----------------------------------------TGG------CT---------------------------------------------------------------ACGTTA----------------------------------------GACGATCA-----CT----AAT---CATT---T---AATTTCCT----------CTTTAGATATAGTGGCGAACTGAGCGACTTTGGTGGCAAGTTGGATGACTTTGCCASizeHit CountTotal NormTotal
No Reads
droEle1
AC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCACT----ATC---GATC---T---CATTTCCA----------TTTCAGATATAGCGGCGAGCTGAGCGATTTCGGTGGCAAGTTGGATGAGTTTGCCASizeHit CountTotal NormTotal
No Reads
droRho1
CTGGTCATGGGAGTGGCGCTGCTTACATTGGCTCTGTGGGCCTACATCAGGTAGGTTATTTT----------------------------------------GA--------------GGGGAGCCATTACAT--------TTT-----------------TCTTAAAAATAGGGCAAGGTCTGGCCATTAGTTGTTAATCCGGTGGTTTCACA-------------------TTGCT----ATT---TATC---T---CTTTTTTA----------TTATAGATACAGCGGCGAGCTGAGCGATTTTGGTGGCAAGTTGGATGATTTTGCCASizeHit CountTotal NormTotal
No Reads
droBia1
CTGGTCATGGGTGTGGCACTGCTGACGCTGGCTCTGTGGGCCTACATCAGGTGGGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
CTGGTCATGGGTGTGGCGCTGCTCACGCTGGCTCTGTGGGCCTACATAAGGTGGGTTTAGATA----------------------------------------GGGATTACATAGCGTGACGGGTTGCACTTCTATTGTTCCCCACTCAAAGCTATATTACCTTTTGAAAATTGG----------TAACTGAAACTAAATGCAAATACTC----------------------------------------TA---C---CCTCTCTA----------TTTTAGATATAGCGGCGAGCTGAGTGACTTTGGCGGCAAGTTGGATGACTTTGCTASizeHit CountTotal NormTotal
No Reads
droEug1
CTGATTATGGGTGTGGCGCTGCTAACGCTGGCTCTGTGGGCCTATATCAGGTAAGTTCTATT----------------------------------------GGAAAATACTCT--TTGAGAAATTGCAATTT--------TTC-----------------ACTGAGAAAAAAGTTAATTGTTTAGAATTAATTGATTATTTAAATACCC----------------------------------------T----A---TATCTTCA----------TTTCAGATATAGCGGTGAGCTTAGTGACTTTGGGGGCAAGTTGGATGACTTTGCAASizeHit CountTotal NormTotal
No Reads
dm3
CTGGTTATGGGTGTGGCGCTTCTAACGCTGGCTCTGTGGGCCTACATTAGGTAGGTTGATTTAGCT----------------------------------------------------------------------------------------------------------------------------------------------------TGAGCTTTTGATGATAATTTTGCC----AAC---GATG---T---TTTATCAA----------TTCCAGATATAGCGGAGAGCTCAGCGACTTTGGCGGCAAGTTGGATGACTTTGCAASizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.........GGTGTGGCGCTTCTAACGCTG...............................................................................................................................................................................................................................................................................................................2114.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
..................................................................................................................................................................................................................................................................................................GGAGAGCTCAGCGACTTTGGCGGC...................2413.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....TTATGGGTGTGGCGCTTCTAACGCT................................................................................................................................................................................................................................................................................................................2512.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000
.....................CTAACGCTGGCTCTGTGGGCCTACATT.............................................................................................................................................................................................................................................................................................2712.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................AGCGGAGAGCTCAGCGACTTTGGC......................2412.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................TTTGGCGGCAAGTTGGATGA........2012.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.............................................................................................................................................................................................................................................................................................ATAGCGGAGAGCTCAGCGACT...........................2112.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000010000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................TTTGGCGGCAAGTTGGATGACTTTGCAA2812.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TATGGGTGTGGCGCTTCTAACGCTGGC.............................................................................................................................................................................................................................................................................................................2712.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................GGCAAGTTGGATGACTTTG...1912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000001000
......................TAACGCTGGCTCTGTGGGC....................................................................................................................................................................................................................................................................................................1912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.......................................................................................................................................................................................................................................TTTTGCC----AAC---GATG---T---TTTATCA...................................................................2212.002000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........GTGTGGCGCTTCTAACGCTG...............................................................................................................................................................................................................................................................................................................2012.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................GACTTTGGCGGCAAGTTG.............1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................GCTCAGCGACTTTGGCGGCAA.................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................CTTCTAACGCTGGCTCTGTGGGCCT..................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................AACGCTGGCTCTGTGGGC....................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TGGTTATGGGTGTGGCGCT.........................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
.................GCTTCTAACGCTGGCTCTGT........................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................GACTTTGGCGGCAAGTTGG............1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TAACGCTGGCTCTGTGGGCCT..................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................GATATAGCGGAGAGCTCAGCGACT...........................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............TGGCGCTTCTAACGCTGGCTCTGT........................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
...........................................................................................................................................................................................................................................................................................................AGCGACTTTGGCGGCAAGTTGGATGAC.......2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TCTAACGCTGGCTCTGTGGGC....................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
...........................................................................................................................................................................................................................................GCC----AAC---GATG---T---TTTATCAA----------TTCCAG..................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................GCTCAGCGACTTTGGCGGCAAGTTG.............2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................TTTGGCGGCAAGTTGGATGACTC.....2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
........GGGTGTGGCGCTTCTAACGCTG...............................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................GCTGGCTCTGTGGGCCTAC................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................GATATAGCGGAGAGCTCAGCGAC............................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................TCAGCGACTTTGGCGGCAAGTTGGATG.........2711.001000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................TCAGCGACTTTGGCGGCAAGTTGGATGAC.......2911.001000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................CTTCTAACGCTGGCTCTGTCT......................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......ATGGGTGTGGCGCTTCTAAC...................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
..............................................................................................................................................................................................................................................................................................TAGCGGAGAGCTCAGCGACTTTGGC......................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......TGGGTGTGGCGCTTCTAAC...................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
CTGGTTATGGGTGTGGCG...........................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
......................................................................................................................................................................................................................................................................................................AGCTCAGCGACTTTGGCGGC...................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................TTGGCGGCAAGTTGGATGACT......2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000
...............................................................................................................................................................................................................................................................................................................ACTTTGGCGGCAAGTTGG............1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..................................................GTAGGTTGATTTAGCT----------------------------------------------------------------------------------------------------------------------------------------------------TGAGC..................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................GACTTTGGCGGCAAGTTGGATGACTT.....2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............GCGCTTCTAACGCTGGCT............................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..GGTTATGGGTGTGGCGCTT........................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TCTAACGCTGGCTCTGTGGGCCT..................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TCTAACGCTGGCTCTGTGGG.....................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................AGTTGGATGACTTTGCAA1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.....TATGGGTGTGGCGCTTCTAACGC.................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................GGAGAGCTCAGCGACTTTGGCGGCAATC...............2811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................GATATAGCGGAGAGCTCAGC...............................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................CTAACGCTGGCTCTGTGGGC....................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....TTATGGGTGTGGCGCTTCTAAC...................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................TTTGGCGGCAAGTTGGATGACT......2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.........................................................................................................................................................................................................................................................................................................TCAGCGACTTTGGCGGCAAGTTGGA...........2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................CGCTTCTAACGCTGGCTCTGTGGGCCT..................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GTAGGTTGATTTAGCT----------------------------------------------------------------------------------------------------------------------------------------------------TGAGCTTTTGG............................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
.......................................................................................................................................................................................................................................................................................................GCTCAGCGACTTTGGCGGCAAGT...............2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................AGCGGAGAGCTCAGCGACT...........................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.....TATGGGTGTGGCGCTTCTAACGCT................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..GGTTATGGGTGTGGCGCTTCT......................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................TTTGGCGGCAAGTTGGATGACTTTG...2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........TGTGGCGCTTCTAACGCTGGCTCTGTGG......................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................TGATTTAGCT----------------------------------------------------------------------------------------------------------------------------------------------------TGAGCTAA...............................................................................................................18110.091000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
droSim2
TTGATCATGGGTGTGGCGCTTCTAACGCTGGCTCTGTGGGCTTACATTAGGTAGGTTGATGCAGCT----------------------------------------------------------------------------------------------------------------------------------------------------TGAGCTTTTGATGATAATCTTGCC----AAC---GATC---A---CTTTTCCA----------TTCCAGATATAGCGGAGAGCTCAGCGATTTTGGCGGCAAGTTGGATGACTTTGCAASizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
..............................................................................................................................................................................................................................................................................................................GATTTTGGCGGCAAGTTGGAT..........2112.00202000000000000000
..........................................................................................................................................................................................................................................................................................GATATAGCGGAGAGCTCAGCGATTTT.........................2612.00200000002000000000
......................................................................................................................................................................................................................................................................................................................CGGCAAGTTGGATGACTT.....1811.00110000000000000000
........................................................................................................................................................................................................................................................................................................CTCAGCGATTTTGGCGGC...................1811.00101000000000000000
...............................................................................................................................................................................................................................................................................................AGCGGAGAGCTCAGCGATTTTGGCGGC...................2711.00101000000000000000
.................................................................................................................................................................................................................................................................................................................TTTGGCGGCAAGTTGGATGA........2011.00100010000000000000
.......................AACGCTGGCTCTGTGGGC....................................................................................................................................................................................................................................................................................................1811.00100100000000000000
..........................................................................................................................................................................................................................................................................................................CAGCGATTTTGGCGGCAAGTTG.............2211.00100000000000100000
......................TAACGCTGGCTCTGTGGGCG...................................................................................................................................................................................................................................................................................................2020.50100100000000000000
droSec2
TTGATCATGGGTGTGGCGCTTCTAACGCTGGCTCTGTGGGCCTACATTAGGTAGGTTGATGCAGCT----------------------------------------------------------------------------------------------------------------------------------------------------TGAGCTTTTGATGATAATCTTGCC----AAC---GATC---A---CTTTTCCA----------TTCCAGATATAGCGGAGAGCTCAGCGACTTTGGCGGCAAGTTGGATGACTTTGCAASizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
................CGCTTCTAACGCTGGCTCTGTGGGC....................................................................................................................................................................................................................................................................................................2511.0011000
..................................................................................................................................................................................................................................................................................................................TTGGCGGCAAGTTGGATGACTT.....2211.0010010
.....CATGGGTGTGGCGCTTCTAACGCT................................................................................................................................................................................................................................................................................................................2411.0010010
...................................................................................................................................................................................................................................................................................................GAGAGCTCAGCGACTTTGGC......................2011.0010010
..................................................................................................................................................................................................................................................................................................................TTGGCGGCAAGTTGGATGACTTTGCA.2611.0010001
...................TTCTAACGCTGGCTCTGTGGGCCT..................................................................................................................................................................................................................................................................................................2411.0010010
droYak3
CTGGTCATGGGTGTGGCGCTGCTCACGCTGGCTCTGTGGGCCTACATCAGGTAGGTTGATAA---C----------------------------------------------------------------------------------------------------------------------------------------------------TGAGTTTTGGTTGAGAATCTTGCC----AACTAA---CTTTA---CTTTTGAA----------TTGCAGATATAGCGGAGAGCTCAGTGACTTTGGCGGCAAGTTGGATGACTTTGCAASizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
...........................................................................................................................................................................................................................................................................................ATATAGCGGAGAGCTCAGTGACTTTGGC......................2812.00200000020000
...........................................................................................................................................................................................................................................................................................ATATAGCGGAGAGCTCAGTG..............................2011.00100000010000
............GTGGCGCTGCTCACGCTGGCTCTGTGG......................................................................................................................................................................................................................................................................................................2711.00101000000000
..........................................................................................................................................................................................................................................................................................GATATAGCGGAGAGCTCAGT...............................2011.00100000010000
............................................................................................................................................................................................................................................................................................TATAGCGGAGAGCTCAGTGACTTT.........................2411.00101000000000
..................................................................................................................................................................................................................................................................................................GGAGAGCTCAGTGACTTTGGC......................2111.00101000000000
..........................................................................................................................................................................................................................................................................................................CAGTGACTTTGGCGGCAAG................1911.00100000010000
..........................................................................................................................................................................................................................................................................................GATATAGCGGAGAGCTCAGTGACTTTGGC......................2911.00100000010000
...........................................................................................................................................................................................................................................................................................ATATAGCGGAGAGCTCAGT...............................1911.00100000010000
.............................................................................................................................................................................................................................................................................................ATAGCGGAGAGCTCAGTGACTTT.........................2311.00100000010000
................................................................................................................................................................................................................................................................................................................CTTTGGCGGCAAGTTGGATGAC.......2211.00110000000000
............................................................................................................................................................................................................................................................................................TATAGCGGAGAGCTCAGTGACTTTGGC......................2711.00100000010000
...........................CTGGCTCTGTGGGCCTTA................................................................................................................................................................................................................................................................................................1820.50100000100000
droEre2
CTGGTCATGGGTGTGGCGCTACTCACGCTGGCTCTGTGGGCTTACATCAGGTAGGTTGATAA---T----------------------------------------------------------------------------------------------------------------------------------------------------TGAGCTCTGGATGATAATCTTGCC----AACTAA---CTCTT---CTTTTGAA----------TTGCAGATATAGCGGAGAGCTCAGTGACTTTGGCGGCAAGTTGGATGACTTTGCTASizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
..........................................................................................................................................................................................................................................................................................GATATAGCGGAGAGCTCAGTGA.............................2212.0020000110
..........................................................................................................................................................................................................................................................................................................................AAGTTGGATGACTTTGCTA1911.0011000000
.................GCTACTCACGCTGGCTCTGTGGGC....................................................................................................................................................................................................................................................................................................2411.0010100000
..............GGCGCTACTCACGCTGGCT............................................................................................................................................................................................................................................................................................................1911.0010100000
...............................................................................................................................................................................................................................................................................................AGCGGAGAGCTCAGTGACTTT.........................2111.0010000100
..............................................................................................................................................................................................................................................................................................................GACTTTGGCGGCAAGTTG.............1811.0010100000
..............................................................................................................................................................................................................................................................................................................GACTTTGGCGGCAAGTTGGAT..........2111.0011000000

Generated: 10/20/2015 at 07:30 PM