ID:

dmo_1808

 Coordinate:

scaffold_6540:4089202-4089352 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-19.2 -19.0 -18.8

Flybase annnotation

CDS [Dmoj\GI23629-cds]; exon [dmoj_GLEANR_8755:3]; intron [Dmoj\GI23629-in]

Repeatable elements

NameClassFamilyStrand
Homo6DNAhAT-Pegasus-
mature
  1. scaffold_4007:36563-36585 -
  2. scaffold_6496:24535033-24535055 -
  3. scaffold_6500:29653795-29653817 +
  4. dmo_1808  scaffold_6540:4089298-4089320 -
  5. scaffold_6680:23673705-23673727 +
star
  1. scaffold_3970:989-1014 -
  2. scaffold_4138:6258-6283 +
  3. scaffold_6328:3315211-3315236 +
  4. scaffold_6498:1738612-1738637 -
  5. scaffold_6500:30007127-30007152 +
  6. dmo_1808  scaffold_6540:4089254-4089279 -
  7. scaffold_6540:33943938-33943963 +
  8. scaffold_6540:34054831-34054856 +
  9. scaffold_6541:2379435-2379460 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CAGCCAATGCGTGTTTATGCGTGCGTACGTATGTCTGTGTGTGTGCGTGTATGTGTACTCATGCGAATAATTATTGAAATATCAGTTGCTCGAAGAGTTCAGGGGATCTCGTAGTCGAGCAGTCTCGACTAGAGCTTTCTTACTTATTTAATTATAAATAATCACCACTAATTTTGAAATATGATTGATTTAAATTTTAAGATCGGAGAATACGAAAGCAAAAAATAATCAGAACCACGAAGGAAGAATCA
**********************************************************************************............((((..((((((.(((.((((((((....))))))))))).))))))))))....****************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body		 V041
embryo
...............................................................................................................................................................................................................................AATAATCAGAACCACGAAGGAAGA.... 24 0 1 1.00 1 1 0 0 0
......................................................................................................................................................................................................TAGATCGGAGAATACGAAAGC................................ 21 1 1 1.00 1 0 1 0 0
......................................................................................................................................................................................................AAGATCGAAGATTAGGAAAG................................. 20 3 13 0.62 8 4 0 4 0
.............................TATGTCTGTGTGTGTGCGTGT......................................................................................................................................................................................................... 21 0 20 0.30 6 0 0 0 6
..................................................................................CAGTTGCTCGAAGAGTTCAGGGG.................................................................................................................................................. 23 0 5 0.20 1 1 0 0 0
......................................................................................TGCTCGAAGAGTTCAGGGGATCTCGTAG......................................................................................................................................... 28 0 6 0.17 1 1 0 0 0
....................................................................................GTTGCTCGAAGAGTTCAGGG................................................................................................................................................... 20 0 6 0.17 1 0 0 1 0
...........................................................................................................................CTCGACTAGAGCTTTCTTACTTATTT...................................................................................................... 26 0 9 0.11 1 1 0 0 0
.........................................................................TTGAAATATCAGTTGCTCGAAGAG.......................................................................................................................................................... 24 0 9 0.11 1 1 0 0 0
................................................................................ATCAGTTGCTCGAAGAGTT........................................................................................................................................................ 19 0 10 0.10 1 0 1 0 0
...........................................................................................................................CTCGACTAGAGCTTTCTTACTTATT....................................................................................................... 25 0 17 0.06 1 1 0 0 0
............................................................................................................................TCGACTAGAGCTTTCTTACTTA......................................................................................................... 22 0 20 0.05 1 1 0 0 0
............................GTATGTCTGTGTGTGTGCGTG.......................................................................................................................................................................................................... 21 0 20 0.05 1 0 0 0 1
...........................................................................................................................CTCGACTAGAGCTTTCTTACTTA......................................................................................................... 23 0 20 0.05 1 1 0 0 0
..............................ATGTCTGTGTGTGTGCGTGT......................................................................................................................................................................................................... 20 0 20 0.05 1 1 0 0 0
.......................................................................TATTGAAATATCAGTTGCTCGAAG............................................................................................................................................................ 24 0 20 0.05 1 1 0 0 0

Anti-sense strand reads

GTCGGTTACGCACAAATACGCACGCATGCATACAGACACACACACGCACATACACATGAGTACGCTTATTAATAACTTTATAGTCAACGAGCTTCTCAAGTCCCCTAGAGCATCAGCTCGTCAGAGCTGATCTCGAAAGAATGAATAAATTAATATTTATTAGTGGTGATTAAAACTTTATACTAACTAAATTTAAAATTCTAGCCTCTTATGCTTTCGTTTTTTATTAGTCTTGGTGCTTCCTTCTTAGT
******************************************************************************************************............((((..((((((.(((.((((((((....))))))))))).))))))))))....********************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body		 V056
head
......................................................................................................................................................................................................TTCTAGCTTCTAATCCTTTC................................. 20 3 13 2.69 35 32 0 3 0
......................................................................................................................................................................................................TTCTAGCCTCTTATGCTTTCGT............................... 22 0 1 1.00 1 1 0 0 0
........................................................................................GAGCTTCTCAAGTCCCCTAGA.............................................................................................................................................. 21 0 11 0.18 2 2 0 0 0
.....................................................................................................CCCCTAGAGCATCAGCTCGTCAGAGC............................................................................................................................ 26 0 20 0.15 3 0 3 0 0
..........................................................................................................................................................................TAAAACTTAACACTAACTAA............................................................. 20 2 8 0.13 1 0 0 0 1
.......................................................................................CGAGCTTCTCAAGTCCCCTAGA.............................................................................................................................................. 22 0 9 0.11 1 1 0 0 0
.....................................................................................AACGAGCTTCTCAAGTCCCCT................................................................................................................................................. 21 0 10 0.10 1 1 0 0 0
.......................................................................................................................................................................................................TCTAGCTTCTAATCCTTTC................................. 19 3 20 0.10 2 2 0 0 0
.............................................................................................................................................................................................AGCTTCAAATTCTAGCCTC........................................... 19 3 13 0.08 1 0 1 0 0
............................................................................................TTCTCAAGTCCCCTAGAGCATCAGC...................................................................................................................................... 25 0 18 0.06 1 0 1 0 0
............................................................................................TTCTCAAGTCCCCTAGAGCATCAG....................................................................................................................................... 24 0 19 0.05 1 1 0 0 0
.............................................................ACGCTTATTAATAACTTTATAGTC...................................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0
.............................................................................................TCTCAAGTCCCCTAGAGCATCAGC...................................................................................................................................... 24 0 20 0.05 1 1 0 0 0
........................CATGCATACAGACACACACACG............................................................................................................................................................................................................. 22 0 20 0.05 1 1 0 0 0
...........ACAAATACGCACGCATGCATACAG........................................................................................................................................................................................................................ 24 0 20 0.05 1 0 1 0 0
......TACGCACAAATACGCACGCATGCAT............................................................................................................................................................................................................................ 25 0 20 0.05 1 1 0 0 0
................................CAGACACACACACGCACATAC...................................................................................................................................................................................................... 21 0 20 0.05 1 0 1 0 0
..........................TGCATACAGACACACACACGCACAT........................................................................................................................................................................................................ 25 0 20 0.05 1 1 0 0 0
......................................................................AATAACTTTATAGTCAACGAGCTT............................................................................................................................................................. 24 0 20 0.05 1 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6540:4089152-4089402 - dmo_1808 CAGCCAATGCGTGTTTATGCGTGCG--------------------TACGTAT--G----TCT----G----------TGTGT--GTGC--GTGTATGTGTACTCATGC-G----AATAA-----------------------------------------------------------------------------------TTATTGAAATATCAGTTG---CTCGAAGAGTTCAGGGGATCTCGTAGTCGAGCAG----TCTCGACTAGAGCT----------------------------------------------TTCTTACTTATTTAATT---------------ATAAATAATCAC-----------C-ACTAATT----TTGAAA--------TATGATTGATTTAAATT-----------------------------TT---------------------------------------------------------------------------------------AA--GATCGGA--GAATA-CGAAAGCAAAAAATAATCAGAACCACGAAGGAAGA------------------ATCA
droVir3 scaffold_12928:3387031-3387239 + AAGCACAGGAGTTGGCTAAACCGCG--------------------TGCG--CGTG----TGT----G----------TG--TGTGTGTGTG----TGTGGATGTAA-----G-------------------------------------CTAGAA--------------------------------TTCTTGTGAATG---------------TAGCTA---AGCGCAGGGTTCAGGGTATTTCTCAGTCGGGCAC----TCCCGATTAGAGCA-------------------------------------------CAGTTTATATTTATTTTATC---------------AG------TGTT-------------------T-CTTT------------------------CAAAT---GTT-----------------------------------------------------------------------------------------------------------------TA--AGTCAT-------------TCAA------------------------TATTTTAGCAAGACAAAATACGAAA
droGri2 scaffold_15116:1019806-1020045 - TAATCAA----------------TATATATATATA----------TATA------CATATAT----G----------CG--C--T------------TGTCG-CAT--GTCT---G---TGATTTC-A-GTT-CGGGCTTATTTTATTATAATAC--------------------------------ATTTTTAGAATA---------------TATTTA---ACAGCTGTGTTCTGGGTATATCGTAGTCGAGCTC----ACTTAACTACAGCG----------------------------------------------TTCCTACTTGTTTTTGC--------------------------------------------------TAATCAA--------T------------------TTTGAATTTATTGCTTTTAAGCA---------------------------------------AAAATTAGGCGAAAA----------------------------------AATTAAAA----GTACACGCAAAAAAG-----------------------------------------------TACATAA
droWil2 scf2_1100000004954:5001401-5001586 - GTATATA----------------TGTATGTACATA------TGTA----------TGT--AT----G--------------T--ATAC--G----TTTAT---------A----AATAA--------------------------------------------------------------------TTTTCGTAAGCATTATTTTAGAA-----------------------------------------------AACAACTCAAGTTGAGCCTAGTTTCTGAATTGAAATAAACAAATGAATTACTGTTAGAGTAC---------------------------------------------------------------------------------------------------------------------------AAAATTTATTTGGCTAT-------------------------------------------------------------TTTATTTATAAAAATTCTATTAGATTGA---------GGAA----------------------------------------------TACA-AA
dp5 XL_group1a:2493422-2493500 + CAGCAAAAGAGTG-C------AGTT--------TG------------TGTGT--G----TGT----G----------TGTGT--GTGT--GTGTGTGTGAAGCAATAA-T----AATAA--------------------------------------------------------------------TAT---------------TCGAAATAATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT
droPer2 scaffold_30:342818-342910 + CAGAGAGTCAGCG----------TT--------TGTGTGTG----TGTG--T--G----TGT----G----------TGTGT--GTGT--GTGTGTATGGGTGCAT-----ATGT------------------------------------------------------------------------------------------ATGGCTTATCAGTGG---CGTGCTGTGCTCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGG
droAna3 scaffold_12943:2331183-2331281 + CATCTTGACTGTGTGACTGCCTGCC--------------------TACC--TATG----GGT----G----------TGTGT--GTGT--GTGTGTGTGTTGTATTG--------------------------TGACGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----------------------------------GGATCCTAAA----ATCC--TCGAG-AAAT----CT-------------------------------------------GGAG
droBip1 scf7180000396674:5628-5774 + ATATATC----------------TATATATGTATT----------TATGTAT--G----TAT----A----------TGTGT--GTTT--ATGTATATGGCCATAC-----GTGAAATA-----------------------------------------------------------------------------------TTTATGAAATTAAAATTG---ATTATGAAATAAAAAG----TTGTAATCTATCTT----TGTGTACTAGTTG----------------------------------------------------------------------------------------------------------------------------------------------TTTTTTATT-------------------------------------------------------------------------------------------------------------------------CT-------------TATT------------------------A-----------------TTTA-AT
droKik1 scf7180000302373:186365-186547 - GAAATTTGAGTTTCT------CTAA--------TG------------AGCTT--C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTACGGGGTATCTCACAGTCGAGCAC----ACTCAGCAGTAGTT----------------------------------------------TTCTTACTAACTTG-CC---------------AT------------------------------------TCCC--------T------------------T---------------------------------------------TGCAAA-TGTGCAATACAAATTAAATAGAAATGTCGATGTAATATCATTTATATTATTTTTACAGATCCCAAA----ACAA--ACAAA-CAAA----CA-------------------------------------------ATAA
droFic1 scf7180000454072:2994610-2994721 + CACGCTTACAT---------------------------ACA----TATG--T--T----TGT----ATGCATGTATGTG--C--A----------TGCACGAGCAT--GTTG---C---CGAT------GTTGCTGCTG----------C-----TGCTGC------------------------------------------------------TGCTGTG-CTTGCAGAGCTCGTGGGCTCTTGTTTTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA
droEle1 scf7180000491272:1028357-1028439 - ATGCACG----------------TGTGTGTGTGTG------TGCG----------TGTGTAT----G----------TG--------T--G----TGTGTATTT----A-----AAT-CC--G------ATTTGAATAA----------T-----TACAAATTTC--------------------------------------------------AATTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACG-AA
droRho1 scf7180000765007:7140-7319 + GTATGTG----------------TGTAGGTATGTA------AGCA----------TAT--AC----A--------------T--A------------TTAAGT-------------------------------------------------------------------------------------------------------------T--------GTTTAGCTGAGTAACGGGTATCTAATAGTCGAGG-C----ACTCGACTATAGCG----------------------------------------------TTCTCCCTTGTTTTTTT---------------ATATTTAGTAAT-------------------T-ATTAAAAAA--------T------------------GTTGTTTTAATTGAGTTTTGGAGGAGGTTATG-------------------------------------------------------------------------------------AG----TTAG--TGAAA-TGGG----TA-------------------------------------------GAAC
droBia1 scf7180000301495:1119775-1119945 + GAGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGGTATCTGATAGTCGAGG-C----CCTCGACTATAGCG----------------------------------------------TTCTTCCTTATTTAACATAGGATGTTACGCTTGGAAATAA-----------CAT-G-TTTTAATTGGTTTTGAGTTTCGAAT-----------TAAATTTTATT-----------------------------------------------------------AAAATCGGACGACTA-----------TATCA-------------TATAGCTGCCA-------------------------------------TAAAAACGATCGGAAA------------------A-TT
droTak1 scf7180000414656:3846-3975 + GAGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGGTATTAAATAGTCGTGA-CACCAACCCGACTATAGCG----------------------------------------------TTCTCTCTTGTTTTATT---------------ATAAAAATTGGAGAATAATAATTATTTTCTAT------------TTATATTATTAT---------------------------ATTA----------------------------------------------------------------------------------------------------------------------------------------TAAACAAAATTGCAAA------------------ATAA
droEug1 scf7180000408984:295341-295475 - GCACTTG----------------TAAATTTCCTCT------CGCA----------AAA-----------------------------------------------------------CT-----------------------------------------------------------------------------------ATTTTAAAATT--------TTATAAAACAGTAACGGGTATCTTATAGTCGCGG-C----ACTCGACTATAGCG----------------------------------------------TTTCTTCTTGTTTTATC---------------ACAAATAACTAT-------------------T-ATTTAAAAA--------T------------------------------------------------------------------------------------------------------------------------------------------------------------A----------------------------------------------TATT-TG
dm3 chrX:19766629-19766768 - GAGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGGTATCTGATAGTCGCAGCA----ACTCGACTATAGCA----------------------------------------------TTCTCTCTTGTTTTATCTAGCA-------ACAGCAAACAAA----------AAT-A-TTTCAAT------------TCGAATTATTATTTATACACAAA-----------------------------TTATT-----------------------------------------------------------------------------------------GCTAAA--TGACA-TGAGAGTAAG-------------------------------------------AAAT
droSim2 2l:18639974-18640064 + TGCCCGTACATTC-G------TGTG--------TG------------TGCGT--G----TTT----G----------TGAGT--GTGT--GTGTGTTTGTGCG---------------------------------------------------------------------------------------------------------------------------------------------------------C----ACTTGGCTGC--CA----------------------------------------------TTGCTTATTGTTGTGTC---------------AT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT------------------------------------------------------------------TT-CG
droSec2 scaffold_8:2603253-2603337 + GCCTGTG----------------GGTGGGTGTGTGTGTGTG----TGTG--T--G----TGT----G----------TGTGT--GTGT--GTGTGTGTGTGTGTGTGTG-----GAT-GT--G------G---------------------------------------------------------------------------TTGCAATAGTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTG
droYak3 v2_chrUn_2865:15904-16084 - CATTTTTATACTC----------CGTCCG----TC------------TGTCC--G----TCCGTATG----------AA--------C--G----TCGA-----------------------G------ATCTCAGGAA----------C-----TACAAATGCTAGAAAGTTCAGATTAAGCATAC----------------------------AGACT---CCAG-------ATGGACTACAGATAGTCGGGG-A----ACTCGACTATAGCG----------------------------------------------TTCTCTCTTATTTAATT---------------TG------TAAT-------------------C-GTTA--------------------------AATTTTATT-------------------------------------------------------------------------------------------------------------------------AT-------------TCTG------------------------A------------------ACT-TT
droEre2 scaffold_4929:6967166-6967407 + ATGTGTG----------------TGTGTGTGTGTG------CGAG----------TGT--GT----G--------------T--A------------TAACGCCAT---AAT---G---GAAAAACTATTTTGCGAGGAACAAATGTTGTCAAAA--------------------------------AATTTGTGAATG-----------------------------------------------------------------------------------------CTAAAAAACAGTCAAGTGACTGTGAATAAAG---------------------------------------------------------------------------------------------------------------------------GAGGCGGGTCTGCGCTTCTGCCCTTCTGCAGAGTAAG-----CGACTGAAATAAAAAT-------------------------ATATTCAAATGCCAAA----CAAA--ACAAA-AAAACACAAAAAATTAAAAGCAAAACGAAAGCGGA---------------AG-CGGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
CAGCCAATGCGTGTTTATGCGTGCG--------------------TACGTAT--G----TCT----G----------TGTGT--GTGC--GTGTATGTGTACTCATGC-G----AATAA-----------------------------------------------------------------------------------TTATTGAAATATCAGTTG---CTCGAAGAGTTCAGGGGATCTCGTAGTCGAGCAG----TCTCGACTAGAGCT----------------------------------------------TTCTTACTTATTTAATT---------------ATAAATAATCAC-----------C-ACTAATT----TTGAAA--------TATGATTGATTTAAATT-----------------------------TT---------------------------------------------------------------------------------------AA--GATCGGA--GAATA-CGAAAGCAAAAAATAATCAGAACCACGAAGGAAGA------------------ATCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAATCAGAACCACGAAGGAAGA------------------....2411.001100000
.................................................TAT--G----TCT----G----------TGTGT--GTGC--GTGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.306060000
......................................................................................................................................................................................................................CAGTTG---CTCGAAGAGTTCAGGGG......................................................................................................................................................................................................................................................................................................................................................................................2350.201100000
..........................................................................................................................................................................................................................TG---CTCGAAGAGTTCAGGGGATCTCGTAG.............................................................................................................................................................................................................................................................................................................................................................................2860.171100000
........................................................................................................................................................................................................................GTTG---CTCGAAGAGTTCAGGG.......................................................................................................................................................................................................................................................................................................................................................................................2060.171000001
......................................................................................................................................................................................................................................................................CTCGACTAGAGCT----------------------------------------------TTCTTACTTATTT........................................................................................................................................................................................................................................................................................2690.111100000
.............................................................................................................................................................................................................TTGAAATATCAGTTG---CTCGAAGAG..............................................................................................................................................................................................................................................................................................................................................................................................2490.111100000
....................................................................................................................................................................................................................ATCAGTTG---CTCGAAGAGTT............................................................................................................................................................................................................................................................................................................................................................................................19100.101000010
......................................................................................................................................................................................................................................................................CTCGACTAGAGCT----------------------------------------------TTCTTACTTATT.........................................................................................................................................................................................................................................................................................25170.061100000
.......................................................................................................................................................................................................................................................................TCGACTAGAGCT----------------------------------------------TTCTTACTTA...........................................................................................................................................................................................................................................................................................22200.051100000
................................................GTAT--G----TCT----G----------TGTGT--GTGC--GTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051010000
......................................................................................................................................................................................................................................................................CTCGACTAGAGCT----------------------------------------------TTCTTACTTA...........................................................................................................................................................................................................................................................................................23200.051100000
..................................................AT--G----TCT----G----------TGTGT--GTGC--GTGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
...........................................................................................................................................................................................................TATTGAAATATCAGTTG---CTCGAAG................................................................................................................................................................................................................................................................................................................................................................................................24200.051100000
droVir3
AAGCACAGGAGTTGGCTAAACCGCG--------------------TGCG--CGTG----TGT----G----------TG--TGTGTGTGTG----TGTGGATGTAA-----G-------------------------------------CTAGAA--------------------------------TTCTTGTGAATG---------------TAGCTA---AGCGCAGGGTTCAGGGTATTTCTCAGTCGGGCAC----TCCCGATTAGAGCA-------------------------------------------CAGTTTATATTTATTTTATC---------------AG------TGTT-------------------T-CTTT------------------------CAAAT---GTT-----------------------------------------------------------------------------------------------------------------TA--AGTCAT-------------TCAA------------------------TATTTTAGCAAGACAAAATACGAAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAGACAAAATACGAAA1911.001000000000000000100000000000000000000000000000000000000000000000
.......................CG--------------------TGCG--CGTG----TGT----G----------TG--TGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000000000000100000000000000000000000000000
............................................................GT----G----------TG--TGTGTGTGTG----TGTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000100000000000000000000000000000000000000000000000000000
droGri2
TAATCAA----------------TATATATATATA----------TATA------CATATAT----G----------CG--C--T------------TGTCG-CAT--GTCT---G---TGATTTC-A-GTT-CGGGCTTATTTTATTATAATAC--------------------------------ATTTTTAGAATA---------------TATTTA---ACAGCTGTGTTCTGGGTATATCGTAGTCGAGCTC----ACTTAACTACAGCG----------------------------------------------TTCCTACTTGTTTTTGC--------------------------------------------------TAATCAA--------T------------------TTTGAATTTATTGCTTTTAAGCA---------------------------------------AAAATTAGGCGAAAA----------------------------------AATTAAAA----GTACACGCAAAAAAG-----------------------------------------------TACATAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
GTATATA----------------TGTATGTACATA------TGTA----------TGT--AT----G--------------T--ATAC--G----TTTAT---------A----AATAA--------------------------------------------------------------------TTTTCGTAAGCATTATTTTAGAA-----------------------------------------------AACAACTCAAGTTGAGCCTAGTTTCTGAATTGAAATAAACAAATGAATTACTGTTAGAGTAC---------------------------------------------------------------------------------------------------------------------------AAAATTTATTTGGCTAT-------------------------------------------------------------TTTATTTATAAAAATTCTATTAGATTGA---------GGAA----------------------------------------------TACA-AASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
CAGCAAAAGAGTG-C------AGTT--------TG------------TGTGT--G----TGT----G----------TGTGT--GTGT--GTGTGTGTGAAGCAATAA-T----AATAA--------------------------------------------------------------------TAT---------------TCGAAATAATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................TGTGT--G----TGT----G----------TGTGT--GTGT--GTGTGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.2550000050000
.......................TT--------TG------------TGTGT--G----TGT----G----------TGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000010000
droPer2
CAGAGAGTCAGCG----------TT--------TGTGTGTG----TGTG--T--G----TGT----G----------TGTGT--GTGT--GTGTGTATGGGTGCAT-----ATGT------------------------------------------------------------------------------------------ATGGCTTATCAGTGG---CGTGCTGTGCTCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................TGTG----TGTG--T--G----TGT----G----------TGTGT--GTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.204000004
droAna3
CATCTTGACTGTGTGACTGCCTGCC--------------------TACC--TATG----GGT----G----------TGTGT--GTGT--GTGTGTGTGTTGTATTG--------------------------TGACGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----------------------------------GGATCCTAAA----ATCC--TCGAG-AAAT----CT-------------------------------------------GGAGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................................................................GT--GTGT--GTGTGTGTGTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.255000005
.................................................................................T--GTGT--GTGTGTGTGTTGTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19110.091100000
......................................................G----GGT----G----------TGTGT--GTGT--GTGTGTGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000001
.....................................................TG----GGT----G----------TGTGT--GTGT--GTGTGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000001
droBip1
ATATATC----------------TATATATGTATT----------TATGTAT--G----TAT----A----------TGTGT--GTTT--ATGTATATGGCCATAC-----GTGAAATA-----------------------------------------------------------------------------------TTTATGAAATTAAAATTG---ATTATGAAATAAAAAG----TTGTAATCTATCTT----TGTGTACTAGTTG----------------------------------------------------------------------------------------------------------------------------------------------TTTTTTATT-------------------------------------------------------------------------------------------------------------------------CT-------------TATT------------------------A-----------------TTTA-ATSizeHit CountTotal NormTotal
No Reads
droKik1
GAAATTTGAGTTTCT------CTAA--------TG------------AGCTT--C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTACGGGGTATCTCACAGTCGAGCAC----ACTCAGCAGTAGTT----------------------------------------------TTCTTACTAACTTG-CC---------------AT------------------------------------TCCC--------T------------------T---------------------------------------------TGCAAA-TGTGCAATACAAATTAAATAGAAATGTCGATGTAATATCATTTATATTATTTTTACAGATCCCAAA----ACAA--ACAAA-CAAA----CA-------------------------------------------ATAASizeHit CountTotal NormTotal
No Reads
droFic1
CACGCTTACAT---------------------------ACA----TATG--T--T----TGT----ATGCATGTATGTG--C--A----------TGCACGAGCAT--GTTG---C---CGAT------GTTGCTGCTG----------C-----TGCTGC------------------------------------------------------TGCTGTG-CTTGCAGAGCTCGTGGGCTCTTGTTTTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GASizeHit CountTotal NormTotal
No Reads
droEle1
ATGCACG----------------TGTGTGTGTGTG------TGCG----------TGTGTAT----G----------TG--------T--G----TGTGTATTT----A-----AAT-CC--G------ATTTGAATAA----------T-----TACAAATTTC--------------------------------------------------AATTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACG-AASizeHit CountTotal NormTotal
No Reads
droRho1
GTATGTG----------------TGTAGGTATGTA------AGCA----------TAT--AC----A--------------T--A------------TTAAGT-------------------------------------------------------------------------------------------------------------T--------GTTTAGCTGAGTAACGGGTATCTAATAGTCGAGG-C----ACTCGACTATAGCG----------------------------------------------TTCTCCCTTGTTTTTTT---------------ATATTTAGTAAT-------------------T-ATTAAAAAA--------T------------------GTTGTTTTAATTGAGTTTTGGAGGAGGTTATG-------------------------------------------------------------------------------------AG----TTAG--TGAAA-TGGG----TA-------------------------------------------GAACSizeHit CountTotal NormTotal
No Reads
droBia1
GAGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGGTATCTGATAGTCGAGG-C----CCTCGACTATAGCG----------------------------------------------TTCTTCCTTATTTAACATAGGATGTTACGCTTGGAAATAA-----------CAT-G-TTTTAATTGGTTTTGAGTTTCGAAT-----------TAAATTTTATT-----------------------------------------------------------AAAATCGGACGACTA-----------TATCA-------------TATAGCTGCCA-------------------------------------TAAAAACGATCGGAAA------------------A-TTSizeHit CountTotal NormTotal
No Reads
droTak1
GAGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGGTATTAAATAGTCGTGA-CACCAACCCGACTATAGCG----------------------------------------------TTCTCTCTTGTTTTATT---------------ATAAAAATTGGAGAATAATAATTATTTTCTAT------------TTATATTATTAT---------------------------ATTA----------------------------------------------------------------------------------------------------------------------------------------TAAACAAAATTGCAAA------------------ATAASizeHit CountTotal NormTotal
No Reads
droEug1
GCACTTG----------------TAAATTTCCTCT------CGCA----------AAA-----------------------------------------------------------CT-----------------------------------------------------------------------------------ATTTTAAAATT--------TTATAAAACAGTAACGGGTATCTTATAGTCGCGG-C----ACTCGACTATAGCG----------------------------------------------TTTCTTCTTGTTTTATC---------------ACAAATAACTAT-------------------T-ATTTAAAAA--------T------------------------------------------------------------------------------------------------------------------------------------------------------------A----------------------------------------------TATT-TGSizeHit CountTotal NormTotal
No Reads
dm3
GAGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGGTATCTGATAGTCGCAGCA----ACTCGACTATAGCA----------------------------------------------TTCTCTCTTGTTTTATCTAGCA-------ACAGCAAACAAA----------AAT-A-TTTCAAT------------TCGAATTATTATTTATACACAAA-----------------------------TTATT-----------------------------------------------------------------------------------------GCTAAA--TGACA-TGAGAGTAAG-------------------------------------------AAATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................AAT------------TCGAATTATTATTTATAC.......................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................GTATCTGATAGTCGCAGCA----ACTCGACTATA......................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................TCTTGTTTTATCTAGCA-------AC......................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................TCGACTATAGCA----------------------------------------------TTCTCTCTTGTTT........................................................................................................................................................................................................................................................................................25200.60120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000440000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................TCGACTATAGCA----------------------------------------------TTCTCT...............................................................................................................................................................................................................................................................................................18200.551100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................TCGACTATAGCA----------------------------------------------TTCTCTCTTGT..........................................................................................................................................................................................................................................................................................23200.4080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................ACTCGACTATAGCA----------------------------------------------TTCTCTCTTGTT.........................................................................................................................................................................................................................................................................................26200.3570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
GAGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGGTATCTGATAGTCGC.........................................................................................................................................................................................................................................................................................................................................................................2430.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................CTCGACTATAGCA----------------------------------------------TTCTCTCTTGTT.........................................................................................................................................................................................................................................................................................25200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................A----ACTCGACTATAGCA----------------------------------------------TTCTCTCTTG...........................................................................................................................................................................................................................................................................................25200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................TCGACTATAGCA----------------------------------------------TTCTCTCT.............................................................................................................................................................................................................................................................................................20200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..GTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGGTATCTGATAGTCGC.........................................................................................................................................................................................................................................................................................................................................................................2240.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................TCGACTATAGCA----------------------------------------------TTCTCTCTTGTTTTA......................................................................................................................................................................................................................................................................................27150.2030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................A----ACTCGACTATAGCA----------------------------------------------TTCTC................................................................................................................................................................................................................................................................................................20200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................CTCGACTATAGCA----------------------------------------------TTCTCTCTTGTTT........................................................................................................................................................................................................................................................................................26200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGGTATCTGATAGTCGC.........................................................................................................................................................................................................................................................................................................................................................................2060.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.AGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGGTATCTGATAGTC...........................................................................................................................................................................................................................................................................................................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................A----ACTCGACTATAGCA----------------------------------------------TTCTCTCTTGTT.........................................................................................................................................................................................................................................................................................27200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..GTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGGTATCTGATAGT............................................................................................................................................................................................................................................................................................................................................................................19200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................CA----ACTCGACTATAGCA----------------------------------------------TTC..................................................................................................................................................................................................................................................................................................1970.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................A----ACTCGACTATAGCA----------------------------------------------TTCTCTCTTGT..........................................................................................................................................................................................................................................................................................26200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................ACTCGACTATAGCA----------------------------------------------TTCTCTCTTGTTT........................................................................................................................................................................................................................................................................................27200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................A----ACTCGACTATAGCA----------------------------------------------TTCTCTCTT............................................................................................................................................................................................................................................................................................24200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................A----ACTCGACTATAGCA----------------------------------------------TTCTCTC..............................................................................................................................................................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................ACTCGACTATAGCA----------------------------------------------TTCTCTCTTG...........................................................................................................................................................................................................................................................................................24200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
GAGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGGTATCTGATA..............................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................A----ACTCGACTATAGCA----------------------------------------------TTCTCTCT.............................................................................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
GAGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGGTATCTGATAGT............................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................TCGACTATAGCA----------------------------------------------TTCTCTCTTGTT.........................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
GAGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGGTATCTGATAGTC...........................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................CTCGACTATAGCA----------------------------------------------TTCTCTCT.............................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................TATAGCA----------------------------------------------TTCTCTCTTGTTT........................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................TCGACTATAGCA----------------------------------------------TTCTCTCTTGTTTT.......................................................................................................................................................................................................................................................................................26200.0510000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................ACTCGACTATAGCA----------------------------------------------TTCT.................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................CA----------------------------------------------TTCTCTCTTGTTTTAT.....................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TGCCCGTACATTC-G------TGTG--------TG------------TGCGT--G----TTT----G----------TGAGT--GTGT--GTGTGTTTGTGCG---------------------------------------------------------------------------------------------------------------------------------------------------------C----ACTTGGCTGC--CA----------------------------------------------TTGCTTATTGTTGTGTC---------------AT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT------------------------------------------------------------------TT-CGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
GCCTGTG----------------GGTGGGTGTGTGTGTGTG----TGTG--T--G----TGT----G----------TGTGT--GTGT--GTGTGTGTGTGTGTGTGTG-----GAT-GT--G------G---------------------------------------------------------------------------TTGCAATAGTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................................G----TGTG--T--G----TGT----G----------TGTGT--GTGT--GTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.2040004
.................................................................................T--GTGT--GTGTGTGTGTGTGTGTGTG-----....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.1530003
.............................TGTGTGTGTGTG----TGTG--T--G----TGT----....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1530003
...............................................................................TGT--GTGT--GTGTGTGTGTGTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1530300
.................................TGTGTGTG----TGTG--T--G----TGT----G----------TGTGT--GTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.1530003
.............................................................T----G----------TGTGT--GTGT--GTGTGTGTGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1530300
.............................................................................TGTGT--GTGT--GTGTGTGTGTGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1530300
.............................TGTGTGTGTGTG----TGTG--T--G----TGT----G----------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1020002
............................GTGTGTGTGTGTG----TGTG--T--G----T..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1020200
..............................................................................GTGT--GTGT--GTGTGTGTGTGTGTGTGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.1020200
...........................GGTGTGTGTGTGTG----TGTG--T--G----TGT----G----------T........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25160.0610100
.............................TGTGTGTGTGTG----TGTG--T--G----TGT----G----------T........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0511000
.............................................................T----G----------TGTGT--GTGT--GTGTGTGTGTGTGTGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.0510100
.................................TGTGTGTG----TGTG--T--G----TGT----G----------TG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510100
...................................................T--G----TGT----G----------TGTGT--GTGT--GTGTGTGTGTGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.0510100
...........................................................TGT----G----------TGTGT--GTGT--GTGTGTGTGTGTGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.0510100
droYak3
CATTTTTATACTC----------CGTCCG----TC------------TGTCC--G----TCCGTATG----------AA--------C--G----TCGA-----------------------G------ATCTCAGGAA----------C-----TACAAATGCTAGAAAGTTCAGATTAAGCATAC----------------------------AGACT---CCAG-------ATGGACTACAGATAGTCGGGG-A----ACTCGACTATAGCG----------------------------------------------TTCTCTCTTATTTAATT---------------TG------TAAT-------------------C-GTTA--------------------------AATTTTATT-------------------------------------------------------------------------------------------------------------------------AT-------------TCTG------------------------A------------------ACT-TTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................................CGA-----------------------G------ATCTCAGGAA----------C-----TACAAATGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................25130.08101000000000
..........................CCG----TC------------TGTCC--G----TCCGTATG----------AA--------C--G----T......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000000000
.......................................................................................................................................................................................................................................................................TCGACTATAGCG----------------------------------------------TTCTCTCTTATTT........................................................................................................................................................................................................................................................................................25200.05101000000000
......................................................................................................................................................................................................................................................................CTCGACTATAGCG----------------------------------------------TTCTCTCTTATTT........................................................................................................................................................................................................................................................................................26200.05101000000000
....................................................................................................................................................................TAGAAAGTTCAGATTAAGCATAC----------------------------AGA............................................................................................................................................................................................................................................................................................................................................................................................................26200.05101000000000
..............................................................................................................................................................................................................................................................G-A----ACTCGACTATAGCG----------------------------------------------TTCTCTCTTA...........................................................................................................................................................................................................................................................................................26200.05100100000000
droEre2
ATGTGTG----------------TGTGTGTGTGTG------CGAG----------TGT--GT----G--------------T--A------------TAACGCCAT---AAT---G---GAAAAACTATTTTGCGAGGAACAAATGTTGTCAAAA--------------------------------AATTTGTGAATG-----------------------------------------------------------------------------------------CTAAAAAACAGTCAAGTGACTGTGAATAAAG---------------------------------------------------------------------------------------------------------------------------GAGGCGGGTCTGCGCTTCTGCCCTTCTGCAGAGTAAG-----CGACTGAAATAAAAAT-------------------------ATATTCAAATGCCAAA----CAAA--ACAAA-AAAACACAAAAAATTAAAAGCAAAACGAAAGCGGA---------------AG-CGGASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...TGTG----------------TGTGTGTGTGTG------CGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000010

Generated: 05/18/2015 at 01:22 AM