ID:

dmo_1761

 Coordinate:

scaffold_6540:1244833-1244983 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-8.6 -8.1 -8.1 -7.8

Flybase annnotation

CDS [Dmoj\GI23821-cds]; exon [dmoj_GLEANR_9012:4]; intron [Dmoj\GI23821-in]

Repeatable elements

NameClassFamilyStrand
Homo6DNAhAT-Pegasus-
mature
star
  1. scaffold_2468:843-863 +
  2. scaffold_2712:356-376 +
  3. scaffold_3533:785-805 +
  4. scaffold_4298:2108-2128 +
  5. scaffold_6482:621549-621569 +
  6. scaffold_6482:2428163-2428183 +
  7. scaffold_6482:2628722-2628742 +
  8. scaffold_6496:25473453-25473473 +
  9. scaffold_6500:30239421-30239441 +
  10. dmo_1761  scaffold_6540:1244861-1244881 +
  11. scaffold_6540:1389365-1389385 +
  12. scaffold_6540:1657094-1657114 +
  13. scaffold_6540:25941367-25941387 +
  14. scaffold_6540:30641961-30641981 +
  15. scaffold_6541:978478-978498 +
  16. scaffold_6541:2194573-2194593 +
  17. scaffold_6541:2283103-2283123 +
  18. scaffold_6541:2361605-2361625 +
  19. scaffold_6680:23794561-23794581 +
  20. scaffold_6680:24398300-24398320 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CAAGCTTATATATACTTTGTGGGGTCTGCCACGCCTCCTTCTGCCTGTTACATACATTTCAACAAAACCATTATACCCTGATTTCCCATTGAAAATGGGTTCAGGGTATAAAAAGAAAATACTTATACGTATAAAATATAAAAAATACAAAGAATATATGTATTTATTTTCTTTACTAATGTATAATTTACGATATTTTAGTTTAATCCCTTAGAACAGTTGATGGGAGTGTTTCCAGCAGCCAGCAGTTC
******************************************************************************................(((.((.....((((.........))))....)).)))*********************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M060
embryo
 V110
male body		 M046
female body
...............TTTGTGGGGTCTGCCACGCCTCC..................................................................................................................................................................................................................... 23 0 20 6.70 134 134 0 0
.......................................................................................................................................................................................................................ACAGTTGATGGGAGTGTTTCC............... 21 0 1 1.00 1 0 1 0
..AGCTTATATATACTTTGTGGGGT.................................................................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0
.................................................................................................................................................................................................................CTTAGAACAGTTGATGGGAGTGTTT................. 25 0 1 1.00 1 0 1 0
.......................................................................................................................................................................................................................ACAGTTGATGGGAGTGTTTCCA.............. 22 0 1 1.00 1 0 1 0
............................................................................................................TAAAAAGAAAATACTTATACGTAT....................................................................................................................... 24 0 1 1.00 1 1 0 0
.....................................................................................CCATTGAAAATGGGTTCAGGGT................................................................................................................................................ 22 0 20 0.35 7 0 0 7
...........................................CCTGTTACATACATTTCAAC............................................................................................................................................................................................ 20 0 20 0.10 2 0 0 2
.....................GGGTCTGCCACGCCTCCTTCT................................................................................................................................................................................................................. 21 0 20 0.10 2 0 0 2
......................................................................................................................................................................................................................ACGGGTTGATGGGAGTGTT.................. 19 3 13 0.08 1 0 1 0
..............................................................................TGATTTCCCATTGAAAATGGG........................................................................................................................................................ 21 0 20 0.05 1 0 0 1
..................................................................................................................................................................................................................TGCGGACAGTTGATGGGA....................... 18 3 20 0.05 1 0 0 1
................................................................................ATTTCCCATTGAAAATGGGTTCAGGG................................................................................................................................................. 26 0 20 0.05 1 0 0 1

Anti-sense strand reads

GTTCGAATATATATGAAACACCCCAGACGGTGCGGAGGAAGACGGACAATGTATGTAAAGTTGTTTTGGTAATATGGGACTAAAGGGTAACTTTTACCCAAGTCCCATATTTTTCTTTTATGAATATGCATATTTTATATTTTTTATGTTTCTTATATACATAAATAAAAGAAATGATTACATATTAAATGCTATAAAATCAAATTAGGGAATCTTGTCAACTACCCTCACAAAGGTCGTCGGTCGTCAAG
***********************************************************************************************************************................(((.((.....((((.........))))....)).)))****************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M060
embryo
 V041
embryo
............................GGTGCGGAGGAAGACGGACAAT......................................................................................................................................................................................................... 22 0 20 0.05 1 0 1
.............................................................TGTTTTGGTAATATGGGACTA......................................................................................................................................................................... 21 0 20 0.05 1 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6540:1244783-1245033 + dmo_1761 CAAGCTTATATATACTTTGTGGGGTCT-GCCACGCCTCCTTCTGCCT---------GTTACATACATT-------TCAACAAAACCATTATACCCTGATTTCCCATTGAAAATGGGTT--------CAGGGTATAAAAAGAAAA--------------T-----ACT------------------------------------------------------------------------TATA---------------CG-------------------TATAAAATAT--------A--------------AAAAATACAAAGAATAT------------A---T-------------------------------------------------------------------------------------------GTAT-------------------------TTAT---------------------------------------------------TTTCTTTACTAA-T--GTATAATTTA---------C------------GATATTTTAGTTTAATC----------CCTTA----------------------------------------------------------------------GA-ACAG-----TT-GAT------------GGG-----AGT------------------------------GTTTCCAGC----------------------AGC------CAGCAGTTC
droVir3 scaffold_13052:897110-897350 - CAAGAATATATACACTTTATGGGGTCG-GAGATGCTTCCTTCTGCCA---------GTTACATACATTTGGATTTTGCACAAATACAATATACCCTTATACC-CATTTTTAATGGGTT--------CAGGGTATAAAAAGAGTG--------------T-----ATA----------------------------------------------------CACGT-TTTGTATAGGAGTA------------------------------------------------------------------------------TAGAAGCAGTAG----------------------------------------------TAAAATTTATA------GTCTT-------------------AAAT---------------------------------------------------------------------------------------------------------------------T-------------------------TAT---AGTCT--------TTCAAGTCTCTAGTTCTTA---------------------------------------------------------------A-----AGTTTCCG-------------------AGATCAA-----A--------------------------------GTTCTCAAC----------------------AGA------CGGC-----
droGri2 scaffold_14588:1106-1321 + TATCCTGATATATGCTCTATGGAGCCG-GAGATGCTTCCGTCTGCCT---------GTTACATACATT-------TGCACAAAACCATTATACCTTTTTTACTCATATTCATTGGGTA--------CAGGGTGTAAAAACATAA--------------A-----ATAT--TTTAATT--------CATATA-------------------------------------------------------------GAGAGAGA-------------------TATATAGCATAATCTTTT-CCATTTAC------TATAATATTCTGATCGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----------------------------------------------------------------------TA-TCAG-----GA-AAT------------AAG-----GGG------------------------------GTATCC----------------------------------AGTA-----
droWil2 scf2_1100000004854:38334-38574 + CAAGAATATATATACTTTGTGGGGTCG-GAGATGCTTCCTTCTGCCT---------GTTACATACATT-------TTGGCGACTTTAATATACCATTTCACC-C------TATGGGTG--------TATGGTATAACAACAACT--------------A-----AAAT---------------------------------------------------CACTTATTTATGTAAATGGA------------------------------------------------------------------------------TAGAATCAATATAAAATTACAGGGTATGC------------------ATATTCGGTG------------TTA--GA-------------------------ATATTTTT----------------------------------------TTAT---------------------------------------------------T-------------------------TTCTTTTCT---------TTCC---------TTAAAAAC----------A-----------------------------------------------------------------------------GCAG-----TACGGA------------GAG-----AGC------------------------------GCTTTC-----------------------------------GAC-----
dp5 Unknown_group_6:48410-48633 - CAAGAATATATATACTTTATGGGGTCG-GAAACGATTCCTTCTGGAC---------GTTACACACATCCACTTTTACCACAAATCTAATATACCCCAATACT-CAT----TTTGAGTA--------TCGGGTATAAAAAGTCAG--------------A-----AAACGTATAAAATGGC----------CAACAGATGGAAAAAA----CT---------------------------A-------------------------------------------------------------------------------A-------------------------------------------T--AA-------TATTTTTTTTACATAAGTT----TTCAGAATTT------------------------------------------------------------TTTTT-------------------------------------------------------------------------A---------C------------GACCTTTAAGTTTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCATT---CTT---AAAA-----
droPer2 scaffold_205:47490-47746 - CAAGAATATATATACTTTATGGGGTCG-GAAACGATTCCTTCTGGAC---------GTTACACACATCCACTTTCACCACAAATCTAATATACCCCAATACT-CAT----TTTGAGTA--------TCGGGTATATATAAT-----------AT-AACC-TAATAATGAA-----A-----------------------TATAATATAAT--ATATATT--------------------TATA---------------TA-------------------TATATATTAT--------A----------------------------------------------------------------------------------------------------------------------AAACCTATAATT-ATATATATGTA-TATAATATATAATTAATGTAAAATT-------------------------------------------------------------------------------AA---------CTTTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTCCCCAAAGCGTTCAGGCAAT------CGA------TGGG-----
droAna3 scaffold_12911:1526827-1527082 - CAAGAATATATATACTTTATAGGGTCG-GAGATGTCTCCTTCTTCTTGTCTCTTGCGTTGCAAACTTT-------TGACCAAAATCATAATACCCTC-------------TGCA-------------AGGGTATAAAAATGGC-----------------------------------------------TGCAGGAAGTGTAATA----GT---------------------------CATTATTTTTTTTTATATAAT-------------------TTTGTAATATTTTTGTTC-GTAAAAAA----------------------------------------------------TTTATTGTATTAGTTA-------TTTTGTTA--CA-------------------------ATCTTTTT-------------------------------------------------------------------------------------------------------------------------TTTTT------TTTAATTTACC-----------------------------CTA----------------------------------------------------------------------AA-ACA---A--TT-AAT------------AG------AG--------------------------------TC-------------------------------TCACGCATCCAG---
droBip1 scf7180000396714:1033226-1033454 - CAAGAATATATATACTTTATAGGGTCG-GAGATGTCTCCTTCACTGC---------GTTGCACACTTT-------TGACCAAAATTATAATACCCTC-------------TGCA-------------AGGGTATAAAAAACAAA--------------A-----AT-------------------------------------------------------------------------CATAAATAC----------------------------------CCTTT-----------TTAAAAAATCCAGG-----------AAAAAT------------A---T--------------------A------------------------------------------------------------------------------------------------------------TATTGGGCTTTGTTTTCACGTTCAAAAGTGACCCTTTAAATTTCAATGT-------------T-------------------------TAT-----------AGCGTAACA----------ACTTATAAATTGTGA-----------------------------------------------------------------------------T------------TGA-----TGT----------------------------------------------------------------------ATTT-----
droKik1 scf7180000302270:429064-429270 + CAAGAATATATATACTTTATAGGGTCG-GAAACGTCTCCTTCACTGC---------GTTGCAAACTTC-------TGACTGAAATTATAATACCCTGC---------------A-------------AGGGTATAAAAATGTAT--------------A-----AAAT-----------------------------------------------------------------------CATTAGAAATGTATGAATACG-------------------ATTATAATATATTTATTT-TAAATAAATATAGG------------------------------------------------------------------------------------------------------------------------------TA----------------------------AATATTATTTTGG--------TTTAAG------------------------------------------------------------------------------------------T-------------------------------------------------------------------CCAAAAT------------------------------------------TA-----AGT------------------------------GTTGGCATG----------------------AGT------TTTT-----
droFic1 scf7180000454107:1347343-1347568 + CAAGAATATATACACTTTATGGGGTCT-GAGGTGTCTCCTTCACTGC---------GTTGCAAACTTC-------TGACTGAAACTATAATACCCT-TTGCT-C------TGCA-------------AGGGTAAAAAAACTAAG--------------T-----ATA------------------------------------TA----------TA-----------------------------------------AT-------------------TT--------------------------------------------------TA---AGCCAC---CGTTCTTAAACTGATAAAA--AA--GATGAG-ATTTTTTTGTTCAAGA-ATACAGTTTACTATATATTTT--------------------------------------------------------AA-------------------------------------------------------------------------------------------------------------------------------A----------------------------------------------------------------------CA-ACA---A--TT-A----------AC--CG------TG--------------------------------------------------------TCTATT---TCCAGAAAACAG---
droEle1 scf7180000490168:4399-4626 + CAAGAATATATATACTTTATAGGGTCG-GAGATGTCTCCTTCACTGC---------GTTGCAAACTTC-------TGACTGAAATTATAATACCCTC-------------TGCA-------------AGGGTATAAAAATAATA--------------A-----ATT------------------AAAATTAAAAGAAGAATAAGA----AT---------------------------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTTGTGC----------CCTTT-----------AAATAGTTTATAAGTTAGTTTTTAAAGCGCGTTTCATTTCTTATACATTTAAT-----ATT-G----------------------CT--TGGGACGTT---------------------------------ATTCCAAT----------------------AGC------GAGCAG---
droRho1 scf7180000780218:40147-40393 + CAAGAATATATATACTTTATAGGGTCG-GAAACGCTTCCTTCTAGCT---------GTTACATACTTT-------TGCACGAATACAATATACCCTTTTACT-C------TACGAGTA--------ACGGGTATAATAAATTATCTATCAATAC-AAAT-----ATA------------------------------------------------------------------------T---------------ATACT-------------------TATAAAATAT--------A--------------TATAACATTTTGAATAT------------A---T------------------------GTTT-------TTTTATGAGAAA-------------------------ATA-------------------------------------------------TATCCTTTTGT--------TCTTTG--------------------------------------------------------------------------------TCAGTATAAAC----------ACTCA----------------------------------------------------------------------TA-ACTG-------------------ACTGTGAGCT---GT----------------------------------TTTTC-T---------------------AG------TAGC-----
droBia1 scf7180000302262:177501-177732 + CAAGAATATATATACTTTATGAGGTCG-GAAACGCTTCCTTCTACCC---------GTTACATACTTT-------CCGACGAATCTAGTATACCCTTTTACT-C------TACGAGTA--------ACGGGTATAAAGAGGAAA--------------T-----ATA------------------------------------AT----------TAAT--------------------TATGAGTAT----------------------------------TTATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-------------------------------------------------------------------------A---------C------------CAATTTTAAGTT------------------------------------------AAGTTTATTTTTTTAACGCATAGTAAATATAGTAAATACATT-----AGA-ACA---A--GA-A-A------------GGA-----AGT------------------------------TACTTCGGC----------------------AAG------CCGAAGTTT
droTak1 scf7180000414066:13181-13435 + CAAGAATATATATACTTTATGGGGTCG-GAAACGCTTCCTTCTAGCT---------GTTACATACTTT-------TGCACGAATCTAATATACCCTTTTACT-C------TACGAGTA--------ACGGGTATAAAAATTTAA--------------A-----ATA------------------------------------AG-------TCTTATT--------------------CTCCAA----------------------------------TGTTTATTAT--------A--------------CAAATTAA-------------------------------------------A--AA-------TAAGTCTTATAC------TC---------------------------------------------------------------------------------------------------------------------------CAATTT-------------G-------------------------TATACC---CT--------TGCAGA-----GGGTATTATAATTTCTGTC---------------AGATGTTTGCAAC----------------------------------GCA------GT-GAA------------GGA-----GAC------------------------------GTTTCCGAC----------------------CAC------ATAAAGTAT
droEug1 scf7180000408984:245979-246225 + CAAGAATTTATATACTTTTTAGGGTCG-GAAACGCTTCTTTCTACCT---------GGTACATACTTT-------TCAACGAATTGAATATACCATTTTACT-A------TACGCGTA--------ACGGCTATAAAAAGATAG--------------T-----ACT------------------CATATT-------------------------------------------------------------------------------------------------------------------------------------------AAAACCCAACATTGGA------------------ATCGTAAATC---TTTTTATTATTTAAAA-TTATTACCGTATATTTATTTCAAATCCTTTTTTAAATGCCTATCCA-TTTAATAAAAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAA-----GAAGAA------------GTA-----AG--------------------------------TT----------------------------AGC------CGAC-----
dm3 chr2R:1678031-1678280 - T------------ACTTCATATGGTCG-GAAACGATTCCTTCTGCCT---------GTTACATACTTT-------TCAGCGAATCAAGTATACTCCTTTACT-C------TACAAGTT--------ACGGGTATAATAATAAAA--------------G-----AAG--------------------------------TACAT-----------------------------------TATATGTAT----------------------------------GTATT-----------TT-------------------------------TA---AAACGTTGGC------------------ATT-------------------------------TTCTGAGTGT------------------------------------------------------------TATT---------------------------------------------------------------------------TTCGTTTAA---------ATTA---------CTA--------------------------------------------------------AAAGAATACTAAATATATTATATGAATTATAGTAGA-ATA---CAATAAGATGTAATTTGAC--TGG-----AAT------------------------------GCTTTCAAC----------------------AGA------TAGC-----
droSim2 3r:2789747-2789951 - CAAGAATATATAGA-TTTATATAGTCGGGAAACGTTTCCTTCTGCCT---------GTTACATACTTT-------TCAACGAATCTAGTATACCCTTTTATA-T------TTGGAATATTCTTCCAACGGAAATACTAAAT-----------GC-AACTATATCAATAAA-----G-----------------------TACATTAT---------------------------------------------------------------------------TAAGTAAATTA--------------------------------------------------------------------------------------TTTTTTATTTAAAGTATC-------------------GAAC---------------------------------------------------------------------------------------------------------------------T-------TA---------C------------GACGT---------------------------------------------------------------------------------------------------------------------------------------TG--------------------------------------------------------TGGATC---TCTACCTTGCAA---
droSec2 scaffold_67:138772-138994 - CAAGAATATATATACTTTATATGGTCG-GAAGCGCTTCGTTCTGCTT---------TTTACATACTTT-------TCAACGAATCTAGTATACCCTTTTACT-T------TACGAGTA--------GCGGGTATAAATACATAA--------------A-----AATT---------------------------------------------------CAATT-TATTTATAGGCTT----------------------------------------------------------------------------------------------------------------------------------------------ATTTTACTTAAATT----------------------------ATTATT-AT-----------------------------------TCATTTTCCCCTTTC--------TATTTG-------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTATATTTAAT-----AGTAACTC-------------------AATTTAATTT------------------------------------AT-TTTAA-A---------------------AC------CGTT-----
droYak3 2R:2504762-2504995 + CAAGAATATATATACTTTATATGGTCG-GAAACGCTTCCTTCTGCCT---------GTTACATACTTT-------TCAACGAATCTAGTATACCCTTTTACT-C------TACGAGTA--------ACGGGTATAACTAGT-----------GTTGTCC-CAGTAATTTAATAAAATAATTTACTAAAA-------------------------------------------------------------------------------------------------------------------TA----------------------------------------------------ATAAAAATATTAGTTG-------CTTTACAA--AA------------------------------------------------------------------------------------------------------------------------------------------------GTATTATT--TTCTA----T--AATGCCTAAC-----------------------------TTT----------------------------------------------------------------------GA-ATAGAGA--T----T------------TAA-----AGT------------------------------GATTGCAGC----------------------AGA------TTGCA----
droEre2 scaffold_4929:25948562-25948856 - CAAGAATATATATACTTTATATGGTCG-GCAAGGCTTCCTTCTGCCT---------GTTACATACTTT-------TCAACGAATCTAGTATACCGTTTTGCT-C------TACGACCA--------ACGGGTATACATAACTAGGAATTTATAC-AAGC-----AAA------------------------------------------------------------------------T---------------AGACAAGAAAATATATATAAAAAGTAAAATATAT--------A--------------AAATATATAAAATATGA------------A---A-------------------------------------------------------------------------------------------GTAT-------------------------CCAT---------------------------------------------------AATATTCATAATATGCT-------------------------TGA-----------AGGATAATA----------AAGTATGAAAAATAA-----------------------------------------------------------------------------A------------TGA-----TATTTACTAAAAATTGAAACAGAAAAATTATATACCCCCAAA---A-----AGACAG-TGGAT-------------C-----

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
CAAGCTTATATATACTTTGTGGGGTCT-GCCACGCCTCCTTCTGCCT---------GTTACATACATT-------TCAACAAAACCATTATACCCTGATTTCCCATTGAAAATGGGTT--------CAGGGTATAAAAAGAAAA--------------T-----ACT------------------------------------------------------------------------TATA---------------CG-------------------TATAAAATAT--------A--------------AAAAATACAAAGAATAT------------A---T-------------------------------------------------------------------------------------------GTAT-------------------------TTAT---------------------------------------------------TTTCTTTACTAA-T--GTATAATTTA---------C------------GATATTTTAGTTTAATC----------CCTTA----------------------------------------------------------------------GA-ACAG-----TT-GAT------------GGG-----AGT------------------------------GTTTCCAGC----------------------AGC------CAGCAGTTCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...............TTTGTGGGGTCT-GCCACGCCTCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23206.7013400001340
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAG-----TT-GAT------------GGG-----AGT------------------------------GTTTCC...........................................2111.001000001
..AGCTTATATATACTTTGTGGGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTA----------------------------------------------------------------------GA-ACAG-----TT-GAT------------GGG-----AGT------------------------------GTTT.............................................2511.001000001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAG-----TT-GAT------------GGG-----AGT------------------------------GTTTCCA..........................................2211.001000001
.....................................................................................................................................TAAAAAGAAAA--------------T-----ACT------------------------------------------------------------------------TATA---------------CG-------------------TAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000010
......................................................................................................CCATTGAAAATGGGTT--------CAGGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.357700000
............................................CCT---------GTTACATACATT-------TCAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.102200000
.....................GGGTCT-GCCACGCCTCCTTCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102200000
...............................................................................................TGATTTCCCATTGAAAATGGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
.................................................................................................ATTTCCCATTGAAAATGGGTT--------CAGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
droVir3
CAAGAATATATACACTTTATGGGGTCG-GAGATGCTTCCTTCTGCCA---------GTTACATACATTTGGATTTTGCACAAATACAATATACCCTTATACC-CATTTTTAATGGGTT--------CAGGGTATAAAAAGAGTG--------------T-----ATA----------------------------------------------------CACGT-TTTGTATAGGAGTA------------------------------------------------------------------------------TAGAAGCAGTAG----------------------------------------------TAAAATTTATA------GTCTT-------------------AAAT---------------------------------------------------------------------------------------------------------------------T-------------------------TAT---AGTCT--------TTCAAGTCTCTAGTTCTTA---------------------------------------------------------------A-----AGTTTCCG-------------------AGATCAA-----A--------------------------------GTTCTCAAC----------------------AGA------CGGC-----SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................TACATTTGGATTTTGCACAAATACAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27201.15230000000000000000000000000001500800000000000000000000000000000000
.....................................................................................................C-CATTTTTAATGGGTT--------CAGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.55110000000000000000000000000000001100000000000000000000000000000000
CAAGAATATATACACTTTATGGGGTCG-...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.204000000000000000000000000030010000000000000000000000000000000000
............................GAGATGCTTCCTTCTGCCA---------GTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22140.142000000000000000000000000000000000200000000000000000000000000000
...................TGGGGTCG-GAGATGCTTCCTTCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.102000002000000000000000000000000000000000000000000000000000000000
................................TGCTTCCTTCTGCCA---------GTTACATACAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26100.101000000000000000000000000000000010000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------TTCAAGTCTCTAGTTCT................................................................................................................................................................................................18200.051000000000000000000000000000000000000000000000010000000000000000
................TTATGGGGTCG-GAGATGCTTCCTTCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000100000000000000000000000000000000000
CAAGAATATATACACTTTATGGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000001000000000000000000000000000000000
..............................................................TACATTTGGATTTTGCACAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
.........ATACACTTTATGGGGTCG-GA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000000000000001000000000000000000000000
droGri2
TATCCTGATATATGCTCTATGGAGCCG-GAGATGCTTCCGTCTGCCT---------GTTACATACATT-------TGCACAAAACCATTATACCTTTTTTACTCATATTCATTGGGTA--------CAGGGTGTAAAAACATAA--------------A-----ATAT--TTTAATT--------CATATA-------------------------------------------------------------GAGAGAGA-------------------TATATAGCATAATCTTTT-CCATTTAC------TATAATATTCTGATCGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----------------------------------------------------------------------TA-TCAG-----GA-AAT------------AAG-----GGG------------------------------GTATCC----------------------------------AGTA-----SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
CAAGAATATATATACTTTGTGGGGTCG-GAGATGCTTCCTTCTGCCT---------GTTACATACATT-------TTGGCGACTTTAATATACCATTTCACC-C------TATGGGTG--------TATGGTATAACAACAACT--------------A-----AAAT---------------------------------------------------CACTTATTTATGTAAATGGA------------------------------------------------------------------------------TAGAATCAATATAAAATTACAGGGTATGC------------------ATATTCGGTG------------TTA--GA-------------------------ATATTTTT----------------------------------------TTAT---------------------------------------------------T-------------------------TTCTTTTCT---------TTCC---------TTAAAAAC----------A-----------------------------------------------------------------------------GCAG-----TACGGA------------GAG-----AGC------------------------------GCTTTC-----------------------------------GAC-----SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCC---------TTAAAAAC----------A-----------------------------------------------------------------------------GCAG-----TACGGA------------GAG-----AG................................................................................2821.50303000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC----------A-----------------------------------------------------------------------------GCAG-----TACGGA------------GAG-----AGC------------------------------G................................................2121.50302010
...............................................................................................................................................................................................................................................................................................................................................................................TTCGGTG------------TTA--GA-------------------------ATATTTTT----------------------------------------TTAT---------------------------------------------------T-------------------------T...................................................................................................................................................................................................................................................2641.25502030
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC----------A-----------------------------------------------------------------------------GCAG-----TACGGA------------GAG-----AGC------------------------------GCTT.............................................2421.00202000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGGA------------GAG-----AGC------------------------------GCTTTC-----------------------------------GAC-----2111.00101000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC----------A-----------------------------------------------------------------------------GCAG-----TACGGA------------GAG-----AGC------------------------------GC...............................................2221.00202000
...................................TTCCTTCTGCCT---------GTTACATACATT-------T...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.8016016000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAAC----------A-----------------------------------------------------------------------------GCAG-----TACGGA------------GAG-----AGC------------------------------GCT..............................................2720.50101000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCC---------TTAAAAAC----------A-----------------------------------------------------------------------------GCAG-----TACGGA------------GAG-----A.................................................................................2720.50100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC----------A-----------------------------------------------------------------------------GCAG-----TACGGA------------GAG-----AG................................................................................1920.50100100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAC----------A-----------------------------------------------------------------------------GCAG-----TACGGA------------GAG-----AGC------------------------------GC...............................................2520.50101000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG-----TACGGA------------GAG-----AGC------------------------------GCTTTC-----------------------------------........2220.50101000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAC----------A-----------------------------------------------------------------------------GCAG-----TACGGA------------GAG-----AGC------------------------------.................................................2320.50101000
................................................................................................................................................................................................................................................................................................................................................................................TCGGTG------------TTA--GA-------------------------ATATTTTT----------------------------------------TTAT---------------------------------------------------T-------------------------T...................................................................................................................................................................................................................................................2540.25101000
...............................................................................................................................................................................................................................................................................................................................................................................TTCGGTG------------TTA--GA-------------------------ATATTTTT----------------------------------------TTAT---------------------------------------------------T-------------------------....................................................................................................................................................................................................................................................2540.25100010
..................GTGGGGTCG-GAGATGCTTCCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.25500500
..........................................TGCCT---------GTTACATACATT-------TTGGCGACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.20404000
............................................CCT---------GTTACATACATT-------TTGGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.20404000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCC---------TTAAAAAC----------A-----------------------------------------------------------------------------GCAG-----TACGG.......................................................................................................22100.20202000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCT---------TTCC---------TTAAAAAC----------A-----------------------------------------------------------------------------GCAG-----TACG........................................................................................................26100.20200020
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCT---------TTCC---------TTAAAAAC----------A-----------------------------------------------------------------------------GCAG-----TACGGA------------G.........................................................................................27100.20201010
.................................................................................................................................................................................................................................................................................................................................................AGGGTATGC------------------ATATTCGGTG------------TTA--GA-------------------------A....................................................................................................................................................................................................................................................................................................................................................................................25200.20403010
........................................................................................................................................................................................................................................................................................................................................TAAAATTACAGGGTATGC------------------ATATTCGG...................................................................................................................................................................................................................................................................................................................................................................................................................................26180.17300030
.................................................................................................................................................................................................................................................................................................................................................AGGGTATGC------------------ATATTCGGTG------------TTA--G...............................................................................................................................................................................................................................................................................................................................................................................................................23200.15303000
...................................................................................................................................................................................................................................................................................................................................................GGTATGC------------------ATATTCGGTG------------TTA--GA-------------------------AT...................................................................................................................................................................................................................................................................................................................................................................................24200.15303000
...............................................................................................................................................................................................................................................................................................................................................................................TTCGGTG------------TTA--GA-------------------------ATATTTTT----------------------------------------TTAT---------------------------------------------------..............................................................................................................................................................................................................................................................................2490.11100001
.................TGTGGGGTCG-GAGATGCTTCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.10200020
.....................GGGTCG-GAGATGCTTCCTTCTGCCT---------G..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.10202000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCT---------TTCC---------TTAAAAAC----------A-----------------------------------------------------------------------------GCAG-----TACG........................................................................................................27100.10100010
.................................................................................................................................................................................................................................................................................................................................................AGGGTATGC------------------ATATTCGGTG------------TTA--GA-------------------------.....................................................................................................................................................................................................................................................................................................................................................................................24200.10202000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCC---------TTAAAAAC----------A-----------------------------------------------------------------------------GCAG-----TACGGA------------GA........................................................................................25100.10101000
....AATATATATACTTTGTGGGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.10202000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCC---------TTAAAAAC----------A-----------------------------------------------------------------------------GCAG-----TACG........................................................................................................21100.10101000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCT---------TTCC---------TTAAAAAC----------A-----------------------------------------------------------------------------GCAG-----TACGG.......................................................................................................26100.10100010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------TTCC---------TTAAAAAC----------A-----------------------------------------------------------------------------GCAG-----TACGG.......................................................................................................23100.10101000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT---------TTCC---------TTAAAAAC----------A-----------------------------------------------------------------------------GCAG-----TACG........................................................................................................23100.10101000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT---------TTCC---------TTAAAAAC----------A-----------------------------------------------------------------------------GCAG-----TACGGA------------G.........................................................................................26100.10101000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCC---------TTAAAAAC----------A-----------------------------------------------------------------------------GCAG-----TACGG.......................................................................................................21100.10100010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------TTCC---------TTAAAAAC----------A-----------------------------------------------------------------------------GCAG-----TACGGA------------GA........................................................................................26100.10101000
.................................................................................................................................................................................................................................................................................................................................ATCAATATAAAATTACAGGGTATGC------------------A..........................................................................................................................................................................................................................................................................................................................................................................................................................................26150.07100010
........................................................................................................................................................................................................................................................................................................................................TAAAATTACAGGGTATGC------------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................18180.06100010
..................................................................................................................................................................................................................................................................................................................................TCAATATAAAATTACAGGGTATGC------------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................24180.06101000
........................................................................................................................................................................................................................................................................................................................................TAAAATTACAGGGTATGC------------------ATA........................................................................................................................................................................................................................................................................................................................................................................................................................................21180.06100010
........................................................................................................................................................................................................................................................................................................................................TAAAATTACAGGGTATGC------------------ATATT......................................................................................................................................................................................................................................................................................................................................................................................................................................23180.06100010
......................................................................................................................................................................................................................................................................................................................................TATAAAATTACAGGGTATGC------------------ATATTCGG...................................................................................................................................................................................................................................................................................................................................................................................................................................28180.06101000
...................................................................................................................................................................................................................................................................................................................................CAATATAAAATTACAGGGTATGC------------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................23180.06100010
.............................................................................................................................................................................................................................................................................................................................................TTACAGGGTATGC------------------ATATTCGGTG------------TTA--G...............................................................................................................................................................................................................................................................................................................................................................................................................27190.05100010
.............................................................................................................................................................................................................................................................................................................................................TTACAGGGTATGC------------------ATATTCGGTG------------T....................................................................................................................................................................................................................................................................................................................................................................................................................24190.05101000
.............................................................................................................................................................................................................................................................................................................................................TTACAGGGTATGC------------------ATATTCGGTG------------TT...................................................................................................................................................................................................................................................................................................................................................................................................................25190.05100010
.............................................................................................................................................................................................................................................................................................................................................TTACAGGGTATGC------------------ATATTCGGTG------------TTA--................................................................................................................................................................................................................................................................................................................................................................................................................26190.05100010
....................................................................................................................................................................................................................................................................................................................................................GTATGC------------------ATATTCGGTG------------TTA--GA-------------------------ATA..................................................................................................................................................................................................................................................................................................................................................................................24200.05101000
.......................................................................................................................................................................................................................................................................................................................................................TGC------------------ATATTCGGTG------------TTA--GA-------------------------ATATTTTT----------------------------------------.....................................................................................................................................................................................................................................................................................................................................26200.05100010
............TACTTTGTGGGGTCG-GAGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100100
.............................................................................................................................................................................................................................................................................................................................................TTACAGGGTATGC------------------ATATTCGG...................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000
.................................................................................................................................................................................................................................................................................................................................................AGGGTATGC------------------ATATTCGGTG------------TTA--GA-------------------------AT...................................................................................................................................................................................................................................................................................................................................................................................26200.05100010
.......................................................................................................................................................................................................................................................................................................................................................TGC------------------ATATTCGGTG------------TTA--GA-------------------------AT...................................................................................................................................................................................................................................................................................................................................................................................20200.05100010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC----------A-----------------------------------------------------------------------------GCAG-----TACGGA------------GAT-----CC................................................................................18200.05100010
.......................................................................................................................................................................................................................................................................................................................................................TGC------------------ATATTCGGTG------------TTA--GA-------------------------ATAT.................................................................................................................................................................................................................................................................................................................................................................................22200.05101000
.....................................................................................................................................................................................................................................................................................................................................................TATGC------------------ATATTCGGTG------------TTA--GA-------------------------AT...................................................................................................................................................................................................................................................................................................................................................................................22200.05101000
..................................................................................................................................................................................................................................................................................................................................................GGGTATGC------------------ATATTCGGTG------------TTA--G...............................................................................................................................................................................................................................................................................................................................................................................................................22200.05101000
.................................................................................................................................................................................................................................................................................................................................................AGGGTATGC------------------ATATTCGGTG------------TTA--GA-------------------------AA...................................................................................................................................................................................................................................................................................................................................................................................26200.05100010
...................................................................................................................................................................................................................................................................................................................................................GGTATGC------------------ATATTCGGTG------------TTA--GA-------------------------ATAT.................................................................................................................................................................................................................................................................................................................................................................................26200.05101000
..................................................................................................................................................................................................................................................................................................................................................GGGTATGC------------------ATATTCGGTG------------TTA--GA-------------------------.....................................................................................................................................................................................................................................................................................................................................................................................23200.05101000
........TATATACTTTGTGGGGTCG-GAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05101000
............................................................................................................................................................................................................................................................................................................................................ATTACAGGGTATGC------------------ATATTCGGTG------------.....................................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000
dp5
CAAGAATATATATACTTTATGGGGTCG-GAAACGATTCCTTCTGGAC---------GTTACACACATCCACTTTTACCACAAATCTAATATACCCCAATACT-CAT----TTTGAGTA--------TCGGGTATAAAAAGTCAG--------------A-----AAACGTATAAAATGGC----------CAACAGATGGAAAAAA----CT---------------------------A-------------------------------------------------------------------------------A-------------------------------------------T--AA-------TATTTTTTTTACATAAGTT----TTCAGAATTT------------------------------------------------------------TTTTT-------------------------------------------------------------------------A---------C------------GACCTTTAAGTTTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCATT---CTT---AAAA-----SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................................................................................................TAAAATGGC----------CAACAGATGGAAAAAA----C....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000010
.................................GATTCCTTCTGGAC---------GTTACACACAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.3570700000000
...................TGGGGTCG-GAAACGATTCCTTCTGGAC---------GC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.3060060000000
.........................CG-GAAACGATTCCTTCTGGAC---------G..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.3060000000600
..........TATACTTTATGGGGTCG-GAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.2040400000000
...................................TTCCTTCTGGAC---------GTTACACACAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.1530000000030
....................GGGGTCG-GAAACGATTCCTTCTGGAC---------GT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.1020000000200
...............TTTATGGGGTCG-GAAACGATT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1021000010000
..............................AACGATTCCTTCTGGAC---------G..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.1020200000000
.........................................................................................................T----TTTGAGTA--------TCGGGTATAAAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510100000000
..................................................................TCCACTTTTACCACAAATCTAATAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510100000000
...................TGGGGTCG-GAAACGATTCCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510100000000
.......ATATATACTTTATGGGGTCG-GAAACGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.0510000001000
.........................CG-GAAACGATTCCTTCTGGAC---------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0511000000000
CAAGAATATATATACTTTATGGGGTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.0510100000000
.........................CG-GAAACGATTCCTTCTGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000010000
....................................TCCTTCTGGAC---------GTTACACACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000100
..............CTTTATGGGGTCG-GAAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000010
droPer2
CAAGAATATATATACTTTATGGGGTCG-GAAACGATTCCTTCTGGAC---------GTTACACACATCCACTTTCACCACAAATCTAATATACCCCAATACT-CAT----TTTGAGTA--------TCGGGTATATATAAT-----------AT-AACC-TAATAATGAA-----A-----------------------TATAATATAAT--ATATATT--------------------TATA---------------TA-------------------TATATATTAT--------A----------------------------------------------------------------------------------------------------------------------AAACCTATAATT-ATATATATGTA-TATAATATATAATTAATGTAAAATT-------------------------------------------------------------------------------AA---------CTTTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTCCCCAAAGCGTTCAGGCAAT------CGA------TGGG-----SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................................CTGGAC---------GTTACACACATCCACTTTCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051010000
..............................................C---------GTTACACACATCCACTTTCAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051010000
droAna3
CAAGAATATATATACTTTATAGGGTCG-GAGATGTCTCCTTCTTCTTGTCTCTTGCGTTGCAAACTTT-------TGACCAAAATCATAATACCCTC-------------TGCA-------------AGGGTATAAAAATGGC-----------------------------------------------TGCAGGAAGTGTAATA----GT---------------------------CATTATTTTTTTTTATATAAT-------------------TTTGTAATATTTTTGTTC-GTAAAAAA----------------------------------------------------TTTATTGTATTAGTTA-------TTTTGTTA--CA-------------------------ATCTTTTT-------------------------------------------------------------------------------------------------------------------------TTTTT------TTTAATTTACC-----------------------------CTA----------------------------------------------------------------------AA-ACA---A--TT-AAT------------AG------AG--------------------------------TC-------------------------------TCACGCATCCAG---SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................................................T-------TGACCAAAATCATAATACCCTC-------------TGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.102020000
...............TTTATAGGGTCG-GAGATGTCTCCTTCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27180.061000010
................................................................................AAAATCATAATACCCTC-------------TGCA-------------AGGGTAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051010000
...................................................................T-------TGACCAAAATCATAATACCCTC-------------TGCA-------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051010000
.......ATATATACTTTATAGGGTCG-GAGATGTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051010000
droBip1
CAAGAATATATATACTTTATAGGGTCG-GAGATGTCTCCTTCACTGC---------GTTGCACACTTT-------TGACCAAAATTATAATACCCTC-------------TGCA-------------AGGGTATAAAAAACAAA--------------A-----AT-------------------------------------------------------------------------CATAAATAC----------------------------------CCTTT-----------TTAAAAAATCCAGG-----------AAAAAT------------A---T--------------------A------------------------------------------------------------------------------------------------------------TATTGGGCTTTGTTTTCACGTTCAAAAGTGACCCTTTAAATTTCAATGT-------------T-------------------------TAT-----------AGCGTAACA----------ACTTATAAATTGTGA-----------------------------------------------------------------------------T------------TGA-----TGT----------------------------------------------------------------------ATTT-----SizeHit CountTotal NormTotal
No Reads
droKik1
CAAGAATATATATACTTTATAGGGTCG-GAAACGTCTCCTTCACTGC---------GTTGCAAACTTC-------TGACTGAAATTATAATACCCTGC---------------A-------------AGGGTATAAAAATGTAT--------------A-----AAAT-----------------------------------------------------------------------CATTAGAAATGTATGAATACG-------------------ATTATAATATATTTATTT-TAAATAAATATAGG------------------------------------------------------------------------------------------------------------------------------TA----------------------------AATATTATTTTGG--------TTTAAG------------------------------------------------------------------------------------------T-------------------------------------------------------------------CCAAAAT------------------------------------------TA-----AGT------------------------------GTTGGCATG----------------------AGT------TTTT-----SizeHit CountTotal NormTotal
No Reads
droFic1
CAAGAATATATACACTTTATGGGGTCT-GAGGTGTCTCCTTCACTGC---------GTTGCAAACTTC-------TGACTGAAACTATAATACCCT-TTGCT-C------TGCA-------------AGGGTAAAAAAACTAAG--------------T-----ATA------------------------------------TA----------TA-----------------------------------------AT-------------------TT--------------------------------------------------TA---AGCCAC---CGTTCTTAAACTGATAAAA--AA--GATGAG-ATTTTTTTGTTCAAGA-ATACAGTTTACTATATATTTT--------------------------------------------------------AA-------------------------------------------------------------------------------------------------------------------------------A----------------------------------------------------------------------CA-ACA---A--TT-A----------AC--CG------TG--------------------------------------------------------TCTATT---TCCAGAAAACAG---SizeHit CountTotal NormTotal
No Reads
droEle1
CAAGAATATATATACTTTATAGGGTCG-GAGATGTCTCCTTCACTGC---------GTTGCAAACTTC-------TGACTGAAATTATAATACCCTC-------------TGCA-------------AGGGTATAAAAATAATA--------------A-----ATT------------------AAAATTAAAAGAAGAATAAGA----AT---------------------------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTTGTGC----------CCTTT-----------AAATAGTTTATAAGTTAGTTTTTAAAGCGCGTTTCATTTCTTATACATTTAAT-----ATT-G----------------------CT--TGGGACGTT---------------------------------ATTCCAAT----------------------AGC------GAGCAG---SizeHit CountTotal NormTotal
No Reads
droRho1
CAAGAATATATATACTTTATAGGGTCG-GAAACGCTTCCTTCTAGCT---------GTTACATACTTT-------TGCACGAATACAATATACCCTTTTACT-C------TACGAGTA--------ACGGGTATAATAAATTATCTATCAATAC-AAAT-----ATA------------------------------------------------------------------------T---------------ATACT-------------------TATAAAATAT--------A--------------TATAACATTTTGAATAT------------A---T------------------------GTTT-------TTTTATGAGAAA-------------------------ATA-------------------------------------------------TATCCTTTTGT--------TCTTTG--------------------------------------------------------------------------------TCAGTATAAAC----------ACTCA----------------------------------------------------------------------TA-ACTG-------------------ACTGTGAGCT---GT----------------------------------TTTTC-T---------------------AG------TAGC-----SizeHit CountTotal NormTotal
No Reads
droBia1
CAAGAATATATATACTTTATGAGGTCG-GAAACGCTTCCTTCTACCC---------GTTACATACTTT-------CCGACGAATCTAGTATACCCTTTTACT-C------TACGAGTA--------ACGGGTATAAAGAGGAAA--------------T-----ATA------------------------------------AT----------TAAT--------------------TATGAGTAT----------------------------------TTATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-------------------------------------------------------------------------A---------C------------CAATTTTAAGTT------------------------------------------AAGTTTATTTTTTTAACGCATAGTAAATATAGTAAATACATT-----AGA-ACA---A--GA-A-A------------GGA-----AGT------------------------------TACTTCGGC----------------------AAG------CCGAAGTTTSizeHit CountTotal NormTotal
No Reads
droTak1
CAAGAATATATATACTTTATGGGGTCG-GAAACGCTTCCTTCTAGCT---------GTTACATACTTT-------TGCACGAATCTAATATACCCTTTTACT-C------TACGAGTA--------ACGGGTATAAAAATTTAA--------------A-----ATA------------------------------------AG-------TCTTATT--------------------CTCCAA----------------------------------TGTTTATTAT--------A--------------CAAATTAA-------------------------------------------A--AA-------TAAGTCTTATAC------TC---------------------------------------------------------------------------------------------------------------------------CAATTT-------------G-------------------------TATACC---CT--------TGCAGA-----GGGTATTATAATTTCTGTC---------------AGATGTTTGCAAC----------------------------------GCA------GT-GAA------------GGA-----GAC------------------------------GTTTCCGAC----------------------CAC------ATAAAGTATSizeHit CountTotal NormTotal
No Reads
droEug1
CAAGAATTTATATACTTTTTAGGGTCG-GAAACGCTTCTTTCTACCT---------GGTACATACTTT-------TCAACGAATTGAATATACCATTTTACT-A------TACGCGTA--------ACGGCTATAAAAAGATAG--------------T-----ACT------------------CATATT-------------------------------------------------------------------------------------------------------------------------------------------AAAACCCAACATTGGA------------------ATCGTAAATC---TTTTTATTATTTAAAA-TTATTACCGTATATTTATTTCAAATCCTTTTTTAAATGCCTATCCA-TTTAATAAAAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAA-----GAAGAA------------GTA-----AG--------------------------------TT----------------------------AGC------CGAC-----SizeHit CountTotal NormTotal
No Reads
dm3
T------------ACTTCATATGGTCG-GAAACGATTCCTTCTGCCT---------GTTACATACTTT-------TCAGCGAATCAAGTATACTCCTTTACT-C------TACAAGTT--------ACGGGTATAATAATAAAA--------------G-----AAG--------------------------------TACAT-----------------------------------TATATGTAT----------------------------------GTATT-----------TT-------------------------------TA---AAACGTTGGC------------------ATT-------------------------------TTCTGAGTGT------------------------------------------------------------TATT---------------------------------------------------------------------------TTCGTTTAA---------ATTA---------CTA--------------------------------------------------------AAAGAATACTAAATATATTATATGAATTATAGTAGA-ATA---CAATAAGATGTAATTTGAC--TGG-----AAT------------------------------GCTTTCAAC----------------------AGA------TAGC-----SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGATGTAATTTGAC--TGG-----AAT------------------------------GCTT.............................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................TT-------------------------------TA---AAACGTTGGC------------------ATT-------------------------------TTCTGAG..................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................AACGTTGGC------------------ATT-------------------------------TTCTGAGTG................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTTGAC--TGG-----AAT------------------------------GCTTTCAAC----------------------AGA------.........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................AAACGTTGGC------------------ATT-------------------------------TTCTGA...................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGTAGA-ATA---CAATAAGATGTAATT................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................TA---AAACGTTGGC------------------ATT-------------------------------TTCTGAGTGT------------------------------------------------------------...................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TATGGTCG-GAAACGATTCCTTCTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................TT-------TCAGCGAATCAAGTATACTCCTTTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................TATT-----------TT-------------------------------TA---AAACGTTGGC------------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................AAACGTTGGC------------------ATT-------------------------------TTCTGAG..................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................TGTAT----------------------------------GTATT-----------TT-------------------------------TA---AAACGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................T-------------------------------TA---AAACGTTGGC------------------ATT-------------------------------TTAC.....................................................................................................................................................................................................................................................................................................................................................................................................2030.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................ATATGGTCG-GAAACGAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1750.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................TTACATACTTT-------TCAGCGAATC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2150.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................AACGATTCCTTCTGCCT---------GTTACATACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2760.1710000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................ACGATTCCTTCTGCCT---------GTTACATACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2660.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................AAACGATTCCTTCTGCCT---------GTTACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2470.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................TCG-GAAACGATTCCTTCTGCCT---------GTTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2670.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................GATTCCTTCTGCCT---------GTTACAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2170.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................ACGATTCCTTCTGCCT---------GTTAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2170.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................AACGATTCCTTCTGCCT---------GTTACATAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2670.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................ATTCCTTCTGCCT---------GTTACATAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2270.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................TCG-GAAACGATTCCTTCTGCCT---------GT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2470.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................TCG-GAAACGATTCCTTCTGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2190.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................TCCTTCTGCCT---------GTTACATACTTT-------T...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................GAAACGATTCCTTCTGCCT---------GT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................AACGATTCCTTCTGCCT---------GT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................TTCCTTCTGCCT---------GTTACATAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................TTCCTTCTGCCT---------GTTACATACTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................TTCCTTCTGCCT---------GTTACATACTTT-------T...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................TCCTTCTGCCT---------GTTACATACTTT-------TCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................TCTGCCT---------GTTACATACTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................TCCTTCTGCCT---------GTTACATACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CAAGAATATATAGA-TTTATATAGTCGGGAAACGTTTCCTTCTGCCT---------GTTACATACTTT-------TCAACGAATCTAGTATACCCTTTTATA-T------TTGGAATATTCTTCCAACGGAAATACTAAAT-----------GC-AACTATATCAATAAA-----G-----------------------TACATTAT---------------------------------------------------------------------------TAAGTAAATTA--------------------------------------------------------------------------------------TTTTTTATTTAAAGTATC-------------------GAAC---------------------------------------------------------------------------------------------------------------------T-------TA---------C------------GACGT---------------------------------------------------------------------------------------------------------------------------------------TG--------------------------------------------------------TGGATC---TCTACCTTGCAA---SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA---------C------------GACGT---------------------------------------------------------------------------------------------------------------------------------------TG--------------------------------------------------------TGGATC---TCTACCTTGCA....2711.00100000010000000000
......................................................................................................................................................................................................................................................................................................................................................................................................AAGTATC-------------------GAAC---------------------------------------------------------------------------------------------------------------------T-------TA---------C------------GACGT---------------------------------------------------------------------------------------------------------------------------------------TG--------------------------------------------------------TGGA....................2611.00100000010000000000
......TATATAGA-TTTATATAGTCGGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000000000
............GA-TTTATATAGTCGGGAAACGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000000000
...GAATATATAGA-TTTATATAGTCGGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000010000000
.........................................................................................................................................................................................................................................................................................................................................................................................................TATC-------------------GAAC---------------------------------------------------------------------------------------------------------------------T-------TA---------C------------GACGT---------------------------------------------------------------------------------------------------------------------------------------TG--------------------------------------------------------TGGATC---TC.............2711.00100000001000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................TC-------------------GAAC---------------------------------------------------------------------------------------------------------------------T-------TA---------C------------GACGT---------------------------------------------------------------------------------------------------------------------------------------TG--------------------------------------------------------TGGATC---TCTACC.........2911.00100000010000000000
....................................................................................................................................................................................................................................................................................................................................................................................................TAAAGTATC-------------------GAAC---------------------------------------------------------------------------------------------------------------------T-------TA---------C------------GACGT---------------------------------------------------------------------------------------------------------------------------------------TG--------------------------------------------------------TGGA....................2811.00100000000010000000
......TATATAGA-TTTATATAGTCGGGAAACGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000000100000000
...............TTTATATAGTCGGGAAACGTTTCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000000000
..................................................................TT-------TCAACGAATCTAGTATACCCTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.9018000600100000002000
....................................TCCTTCTGCCT---------GTTACATACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.6012000000000120000000
..........................................TGCCT---------GTTACATACTTT-------TCAACGAATC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.5511000000001100000000
..................................................................TT-------TCAACGAATCTAGTATACCCTTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.45900000000900000000
...........................................................ACATACTTT-------TCAACGAATCTAGTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.45900000006030000000
..................................TTTCCTTCTGCCT---------GTTACATACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2340.25100000000010000000
....................................TCCTTCTGCCT---------GTTACATACTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.15300000000300000000
.........................................CTGCCT---------GTTACATACTTT-------TCAACGAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.15300000020000010000
...........................................................ACATACTTT-------TCAACGAATCTAGTAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.15300000000003000000
..........................................TGCCT---------GTTACATACTTT-------TCAACGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.10200000020000000000
..........................................TGCCT---------GTTACATACTTT-------TCAACG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.10200000000200000000
.......................................TTCTGCCT---------GTTACATACTTT-------TCAACGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05100100000000000000
..............................................T---------GTTACATACTTT-------TCAACGAATCTAGTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.05100000000010000000
....................................TCCTTCTGCCT---------GTTACATACTTT-------TCAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.05100000000010000000
.......................................TTCTGCCT---------GTTACATACTTT-------TCAACGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05100100000000000000
..............................................................TACTTT-------TCAACGAATCTAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100000010000000000
..........................................TGCCT---------GTTACATACTTT-------TCAACGAATCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.05100000000010000000
.............................................CT---------GTTACATACTTT-------TCAACGAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100010000000000000
.................................................................TTT-------TCAACGAATCTAGTATACCCTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100000000000010000
.............................................................ATACTTT-------TCAACGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15200.05100000000010000000
..........................................................TACATACTTT-------TCAACGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................17200.05100000000010000000
..........................................TGCCT---------GTTACATACTTT-------TCAACGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100000000010000000
......................................CTTCTGCCT---------GTTACATACTTT-------TCAACGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.05100000000010000000
droSec2
CAAGAATATATATACTTTATATGGTCG-GAAGCGCTTCGTTCTGCTT---------TTTACATACTTT-------TCAACGAATCTAGTATACCCTTTTACT-T------TACGAGTA--------GCGGGTATAAATACATAA--------------A-----AATT---------------------------------------------------CAATT-TATTTATAGGCTT----------------------------------------------------------------------------------------------------------------------------------------------ATTTTACTTAAATT----------------------------ATTATT-AT-----------------------------------TCATTTTCCCCTTTC--------TATTTG-------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTATATTTAAT-----AGTAACTC-------------------AATTTAATTT------------------------------------AT-TTTAA-A---------------------AC------CGTT-----SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................................................................T-------TCAACGAATCTAGTATACCCTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.1533000
.....ATATATATACTTTATATGGTCG-GA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510100
droYak3
CAAGAATATATATACTTTATATGGTCG-GAAACGCTTCCTTCTGCCT---------GTTACATACTTT-------TCAACGAATCTAGTATACCCTTTTACT-C------TACGAGTA--------ACGGGTATAACTAGT-----------GTTGTCC-CAGTAATTTAATAAAATAATTTACTAAAA-------------------------------------------------------------------------------------------------------------------TA----------------------------------------------------ATAAAAATATTAGTTG-------CTTTACAA--AA------------------------------------------------------------------------------------------------------------------------------------------------GTATTATT--TTCTA----T--AATGCCTAAC-----------------------------TTT----------------------------------------------------------------------GA-ATAGAGA--T----T------------TAA-----AGT------------------------------GATTGCAGC----------------------AGA------TTGCA----SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------------------------------------------------------------------GA-ATAGAGA--T----T------------TAA-----AGT------------------------------GATTGCAGC----------------------..................27206.351271665820000000
....................................................................................................................................ATAACTAGT-----------GTTGTCC-CAGTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
..........................................................................................................................................................TGTCC-CAGTAATTTAATAAAATA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------------------------------------------------------------------GA-ATAGAGA--T----T------------TAA-----AGT------------------------------GATTGCAG.........................................26200.8517017000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------------------------------------------------------------------GA-ATAGAGA--T----T------------TAA-----AGT------------------------------GATTGCAGC----------------------A.................28200.45909000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------------------------------------------------------------------GA-ATAGAGA--T----T------------TAA-----AGT------------------------------GATTGC...........................................24200.30606000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-ATAGAGA--T----T------------TAA-----AGT------------------------------GATTGCAG.........................................25200.30606000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--TTCTA----T--AATGCCTAAC-----------------------------TTT----------------------------------------------------------------------GA-ATAGA................................................................................................................2870.14101000000000
..................................................................................................TACT-C------TACGAGTA--------ACGGGTATAACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.10200200000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-ATAGAGA--T----T------------TAA-----AGT------------------------------GATTGCA..........................................24200.10211000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-ATAGAGA--T----T------------TAA-----AGT------------------------------GATTGCAGC----------------------..................25200.10202000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-ATAGAGA--T----T------------TAA-----AGT------------------------------GATTGCAGC----------------------..................26200.05100100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT----------------------------------------------------------------------GA-ATAGAGA--T----T------------TAA-----AGT------------------------------GATTGC...........................................26200.05100100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAGA--T----T------------TAA-----AGT------------------------------GATTGCAGC----------------------AGA------T........27200.05101000000000
..................................CTTCCTTCTGCCT---------GTTACATAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05110000000000
.................................GCTTCCTTCTGCCT---------GTTAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05101000000000
.........................................CTGCCT---------GTTACATACTTT-------TCAACGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05100100000000
droEre2
CAAGAATATATATACTTTATATGGTCG-GCAAGGCTTCCTTCTGCCT---------GTTACATACTTT-------TCAACGAATCTAGTATACCGTTTTGCT-C------TACGACCA--------ACGGGTATACATAACTAGGAATTTATAC-AAGC-----AAA------------------------------------------------------------------------T---------------AGACAAGAAAATATATATAAAAAGTAAAATATAT--------A--------------AAATATATAAAATATGA------------A---A-------------------------------------------------------------------------------------------GTAT-------------------------CCAT---------------------------------------------------AATATTCATAATATGCT-------------------------TGA-----------AGGATAATA----------AAGTATGAAAAATAA-----------------------------------------------------------------------------A------------TGA-----TATTTACTAAAAATTGAAACAGAAAAATTATATACCCCCAAA---A-----AGACAG-TGGAT-------------C-----SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
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Generated: 05/18/2015 at 01:15 AM