ID:

dmo_1747

 Coordinate:

scaffold_6540:654393-654543 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-6.5 -5.5

Flybase annnotation

CDS [Dmoj\GI23792-cds]; exon [dmoj_GLEANR_8927:5]; intron [Dmoj\GI23792-in]

Repeatable elements

NameClassFamilyStrand
Homo6DNAhAT-Pegasus+
mature
star
  1. scaffold_199:1152-1172 -
  2. scaffold_6359:4276880-4276900 -
  3. scaffold_6473:1199340-1199360 -
  4. scaffold_6473:6504180-6504200 -
  5. scaffold_6473:7130592-7130612 -
  6. scaffold_6473:14923888-14923908 -
  7. scaffold_6473:16421531-16421551 -
  8. scaffold_6482:1466019-1466039 -
  9. scaffold_6496:25795574-25795594 -
  10. scaffold_6498:379918-379938 -
  11. dmo_1374  scaffold_6498:1579562-1579582 -
  12. scaffold_6500:29765615-29765635 -
  13. scaffold_6500:29886916-29886936 -
  14. scaffold_6500:30013947-30013967 -
  15. dmo_1747  scaffold_6540:654492-654512 -
  16. scaffold_6540:2192790-2192810 -
  17. scaffold_6540:2454036-2454056 -
  18. scaffold_6541:1871105-1871125 -
  19. scaffold_6654:222588-222608 -
  20. scaffold_6680:18992228-18992248 -

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GACGGACGGACAGACTGACAGGGCTATATCAACTCAGCTCGTCGCCCTGATCAAGAATATATATACCTTATGGGGTCTGCGATGATTCCTTCTGCCTGTTACATACTTTTCACAAAACCATTATACCGTGATATACAAAACATTATTTGATTTGTATTCGTAAGACCGACCAATATTACATCGAAAATTTACATTTTTCAGAAGCCAATCATTTAAAGAGGATGACGGTACATGGAAAGGCAATGATGATG
*********************************************************************************...............................................(((.(((((((.((.....)).))))))))))..***************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V110
male body		 M046
female body
 M060
embryo
 V041
embryo
 V056
head
........................................................................................................................................AAAACATTATTTGATTTGTATTCGTA......................................................................................... 26 0 1 1.00 1 0 1 0 0 0
..................................................................................................................................................................................................................ATTTAAAGAGGATGACGGTA..................... 20 0 1 1.00 1 1 0 0 0 0
......................................................................................................................................................................................................CAGAAGCAGACCATTTAAAGA................................ 21 3 4 0.50 2 2 0 0 0 0
..........................TATCAACTCAGCTCGTCGCCC............................................................................................................................................................................................................ 21 0 9 0.11 1 0 0 1 0 0
GACGGACGGACAGACTGA......................................................................................................................................................................................................................................... 18 0 20 0.10 2 0 1 0 1 0
.........................................TCGCCCTGATCAAGAATATATATACC........................................................................................................................................................................................ 26 0 19 0.05 1 0 0 1 0 0
.................................................................................ATGATTCCTTCTGCCTGTTAC..................................................................................................................................................... 21 0 20 0.05 1 0 1 0 0 0
.........ACAGACTGACAGTGCTATATTT............................................................................................................................................................................................................................ 22 3 20 0.05 1 0 0 0 0 1
................................................GGTCAAGAATATATATACC........................................................................................................................................................................................ 19 1 20 0.05 1 0 0 1 0 0

Anti-sense strand reads

CTGCCTGCCTGTCTGACTGTCCCGATATAGTTGAGTCGAGCAGCGGGACTAGTTCTTATATATATGGAATACCCCAGACGCTACTAAGGAAGACGGACAATGTATGAAAAGTGTTTTGGTAATATGGCACTATATGTTTTGTAATAAACTAAACATAAGCATTCTGGCTGGTTATAATGTAGCTTTTAAATGTAAAAAGTCTTCGGTTAGTAAATTTCTCCTACTGCCATGTACCTTTCCGTTACTACTAC
*****************************************************************************************...............................................(((.(((((((.((.....)).))))))))))..********************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V041
embryo
 M060
embryo
..........................ATAGTTGAGTCGAGCAGCGGGACTAG....................................................................................................................................................................................................... 26 0 5 0.20 1 1 0 0
................................................................TGGAATACCCCAGACGCTA........................................................................................................................................................................ 19 0 5 0.20 1 1 0 0
..........................ATAGTTGAGTCGAGCAGCGGGACT......................................................................................................................................................................................................... 24 0 5 0.20 1 1 0 0
..........................ATAGTTGAGTCGAGCAGCGGGACTA........................................................................................................................................................................................................ 25 0 5 0.20 1 1 0 0
.................................AGTCGAGCAGCGGGACTAGTTCTTAT................................................................................................................................................................................................ 26 0 20 0.10 2 2 0 0
................................................CTAGTTCTTATATATATGGAATACCCCA............................................................................................................................................................................... 28 0 11 0.09 1 1 0 0
.................................AGTCGAGCAGCGGGACTAGTTCTT.................................................................................................................................................................................................. 24 0 20 0.05 1 1 0 0
......................CGATATAGTTGAGTCGAG................................................................................................................................................................................................................... 18 0 20 0.05 1 1 0 0
...................................................................................CTAAGGAAGACGGACAATGTAT.................................................................................................................................................. 22 0 20 0.05 1 0 0 1
...................................................................................................................................ATGTGTTTTGTAATATACTAT................................................................................................... 21 3 20 0.05 1 0 1 0
................................................................................................ACAATGTATGAAAAGTGTTTTGGTA.................................................................................................................................. 25 0 20 0.05 1 0 1 0
.............................................................................................CGGACAATGTATGAAAAGTG.......................................................................................................................................... 20 0 20 0.05 1 1 0 0
.....................................GAGCAGCGGGACTAGTTCTTATATA............................................................................................................................................................................................. 25 0 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6540:654343-654593 - dmo_1747 GACGGACGGACAGACTGACAGGGCTATATCAACTC-AGCTCGTCGCCCTGATCAAGAATATATATACCTTATGGGGTCTGCGATG---------------ATTCCTTCTGCCTG------TTACATACTTTT-------CA-CAAAACCATTATACCGTGATATAC-------------------AAAACA---------TTAT---T----------------------TGATTTGTATTCGTAAGACCGACCAAT--------------------------AT--------------------------------TA------CAT---CGAAAATTTA-CATTTTT----------------------------------------------------------------------------------------------------------CAG--------------------------------AAGCC-AATCATTTAAAGAGGATGACGGTA-----------------------------------------------------------------------C-------------ATGGA-----------AAGGCAATGA---TGATG
droVir3 scaffold_12936:104708-104959 - GACGGACAGACAGACGGACATGGCTAGATCGACTC-GGCTATTCATACTGATCAAGAATATATATACTTTATGGGGTCGGAGATG---------------CTTCCTTCTGCCTG------TTACATACATTTGGATTTTGCACAAATACAATATACCCTTATATCCA-------------------------------------TTTTTAAT--------GGGTT----------------------------------------------------------------------------------------------------------------------------CAGGGTATAATCAAATGAAATAATGCAAAATAAATATATGTTAA---------------GAAA-------------------------------------------------------------------------------AATTTAAAAATTTAAAATAAATGAATATA----------------------------------------------------------------------------------------AA----------G-TTATTAAAA---AAATA
droGri2 scaffold_15245:13076834-13077067 + ---------------------GGTTATATCGACTC-GCCTGTTGATCCTGATTAAGAATAAATATTATTTATGGGTTCGAAGAAG---------------CTTCTTCCTGCCTG------TTGCATACTTTT-------AAAGAAAACAATTATACATTTTGATAA--------------------A-----------------TTCTTCCT--------G-------GCTGATTGATATTAATA------------------------------------AAAG--------------------------------GCAATGA---------ATACTC--A--------------------------------------------------A---------------A-------------CTCAAACTCAAACAAAATTTGT---GGTATTTATTGAATGGGAAT------------------------------AAC----------------ATTA---------------------------TA--------------------------------------------------------GTTGT-----------AAGTCAATTG---TAATA
droWil2 scf2_1100000004902:4395164-4395425 + GACGGACGGACGGACGGACATGGCTATTTGAACTC-GTCTCGTCGTGCTGATCAAGAATATATATACTTTATATGGTCGGAGATG---------------CTTCCTTCTATGCG------TTGCATACTTTT-------GACCAAAATTAATATACCCTTTTT------GCA-----AGGGTATAAATATTA--------TGAATT------------------------GGATGTATGTTTTTA------------------------------------TAAA--------------------------------CTGTTGA---------ATTATA--T--------------------------------------------------A---------------C-------------CTATAGATTAGATTAAACACTTTAAAATAAC----AAAAAAGAAT------------------------------AAA----------------AGTA-----------------------------------------------------------------------A-------------ATGAA-----------GAATAAATAA---TAATA
dp5 Unknown_singleton_2163:1275-1524 + GACGGACAGACAGAC---CAGGGCTCAATCGTCTC-GGCTATTGATGCTGATCAAGAATATATATACTTTATGGGGTCGGAAATCGGAATCGGTCGGAATCGTTCTTCTGGACG------TTACACACATCCGTTTTCACCACAAATCTAATATACCCCTCTACTCATATTGAGTATCGGGTATAACAAA------ACT-GCAA-------TAGAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCATT----CG--------------------------------------------------------------------------------------------------------------------------------------------------AATTAAAAAGA---GTTGA--A--TGA-------------------------------------GTACGATGTGTATGC-GAGAAAGTGT---TGGTT
droPer2 scaffold_16:1818595-1818861 + GACGGACGGACAGACAGACAGGGCTCAATCGACTC-GGCTATTGATGCTGATCAAGAATATATATACTTTATAGGGTCGGAAACG---------------ATTCCTTCTGGACG------TTACACACATCCACTTTTACCACAAATCTAATATACCCCAATACTCATTTTGAGTATCGGGTATAATTAA--------CAAAAATT-----------------------------------------------------------------AGCACAA--------------------------------------------------------AAAT---------------------------------------------TGTATTACA-CGTTTTTTTGTTTTTAAAC-------------------------------------------------------------------------------ACCT-TATCGTTTTAAG---GTGTAAGAGTGA-AT-----------------------------------------------------------------T-------------TTCAT------AAA--A-----ATGTGAATGTTA
droAna3 scaffold_12926:182186-182444 - -----ACAGACAGACGGACATGCTTATATCGACTC-GG--GGTGATCCTGATCAAGAATATATATACTTTATAGGGTCGGAGATG---------------TCTCCTTCCCTGCG------TTGCACACTTTT-------GACCAAAATTATAATACCCTCT--------GCA-----AGGGTATAAAAATC-----------AATT---------------------------------------------------------------------------AAT-CTTATTT------------------------------------TATT--GTTT------------------------------------------------------------TAGCAC-----------------------TTTCAGTCAATATTTTT---------------------------------------------------------TTCTC---------------------------------------AATAAATGGAATAGCTCAAGAAACGGTCTTTAAAAAATCTGACAGCC-------------ATGGA-----------AAGTTAATGT---GTATG
droBip1 scf7180000396481:42520-42771 - GACAGACGGACAGACGGACATGCTCATATCAACTC-AGGAGGTGATCCTGATCAAGAATATATATACTTTATAGGGTCGGAGATG---------------TCTCCTTCACTGCG------TTGCACACTTTT-------GGACAAAATTATAATACCCTCT--------GCA-----AGGGTATAAAAAA------AGCATAGATTTTTTAT--------TTGTTT--AG---------------------------------GA----ATACAATTAAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTAGCAGTAA-AATGTTTTTCATATGCGAATCAATAAAA---ATTAA--T--CGACTGTA------------------C-------------TTGAA-----------ATGCCG-----------A
droKik1 scf7180000301178:534-775 - GACGGACGGACAGACGGACATGGCTAGATCGACTCTCGCTATTGATGCTGATCGAGAATATATATACTTTATAGGGTCGGAAACG---------------TCTCCTTCACTGCA------TTGCAAAATTCT-------GACTGAAATTATTATACCCT----------GCA-----AGGGTATAAAAACT----------AG-T--TTTAT--------TCGTTTGGGCTACACAGT----------------------------------------------------------------------------------------------------------------------------------------------------------------TTT---------------------------------------------------------------------ATTTCGGCATTTAAAAAAAAAAGCT-TATATCTCAAAGTAGCTGAAAATA-----------------------------------------------------------------------C-------------GTTGA-----------AAAACAACG--------A
droFic1 scf7180000454072:186464-186699 + GACAGGAGGACAGACGGACAGACGTATTTCGATTC-AGATGGTGATGCTGATCAAGAATATATATACTTTATCGGGTCTGAGGTG---------------CTTCCTTCACTGCG------TTGCAAACTTCT-------GACTGAAATTATAATACCCTTTTGCTC--TGCA-----AGGGTATAATAAA------AGCAAAGATT---------------------------------------------------TGCC----------------------T-CACATTT------------------------------------CTTT--GAATTTA-CATTTT----------------------------------------------------------------------------------------------------------GAAGC-CAA---------------------------------AATTATTCAC-------AACG----------------------------------------------------------------------------------------GTAGA-----------GAAA--AAGCGAATAAAA
droEle1 scf7180000491323:2195-2420 + -ACGGACGGACAGACGGACATGGCTAGATCGACTC-TGCTAGTGATGCTGATCAAGAATATATATACTTTATAGGGTCAGAAATG---------------TCTCCTTCACTGCG------TTGCAAACTTCT-------GACTGAAATTATAATACCCTCT-------------------GTATAAAAACA------TG-ACAA-------TAGACTCCA----------------------------------AAT--------------------------AT--------------------------------AA------CAT---CAAAAATT--C--------------------------------------------------A---------------GAAG-------------------------------------AATTTAACGA-CAAAATC------------------------------AAC----------------AACA-----------------------------------------------------------------------C-------------ATATA-----------TTGGCGACGA---TGAAA
droRho1 scf7180000767930:16769-17025 + GACAGACGGACAGACGGACATGGCTATATCAACTC-AGGAGGTGATCCTGATCAAGAATATATATACTTTATAGGGTCGGAGATG---------------TCTCCTTCACTGCG------TTGCACACTTTT-------GACCAAAATTATAATACCCTCT--------GCA-----AGGGTATAAAAATAT---------G--TA---------TTTCTTAGTTTTCGG-----------------------------------------------------------------------------------------------------TACAAACC--C--------------------------------------------------A---------------G-----------------AAGTGTGATTA-------------------TAA-CGTATACTTTATTTCGT-----------------G-AGTT-----------------------TG----------------ATTCGAAGAAA----------------------------------------ATGTGGATATGTG---------------GAAAACAGGGA---GAAGG
droBia1 scf7180000301689:10790-11050 - -ACGGACGGACATACGGACATGACTAGATCGACTC-GTCTTGTGACGCTGATTAAGAATATATATACTTTATGGGATCGGAAACG---------------TCTCCATCACTGCG------TTGCAAACTTCT-------GACTGAATTCATTATACCCTCT--------GCA-----AGGGTATAAAAAA------ATTATAGCTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGGGCTTTTAGACATATTATCTTATAATATTGAGAATATAATTTT---T------TAAGA-----------ATT-------------------TCG-AATT-----------------------CA----------------ATTTAATAAAA----------------------------------------GTGATAACATACA---------------GATGGCAAAAA---AAATG
droTak1 scf7180000415789:799187-799410 - GACAGACGGACAGACGGACATGGCTAGATCGACTC-GGCTAGTGATCCTGATCAAGAATATATATACTTTATGGGGTCGGAAACG---------------CTTCCTTCTCCCTG------TTACATACTTTT-------GCACGAATACAATATACCCTTTTACTC--TACGAGTAACGGGTATAAAAACAT---------CGATA---------TTTCTCAACATCTAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACTCAAATAGGGTGACCATT-----------------------------------------------------------------------T-------------TTAAA-----------AAATATACGA---TACTT
droEug1 scf7180000409432:4609-4842 + -----ACAGACAGACGGATACGGCTTAATCGACTT-CGCTATTGATACTGATCAAGAATATATATACTTTATAGGGCCAGAGAAG---------------CATCCTTCTACCTG------TTACATACTTTT-------CAACGAATCTAGTATACCCTTATACAC--TACGAGTATCGGGTATAAAAATAT-----ACAACAATT---------------------------------------------------------------------------AAAG--------------------------------AA------AAT---TAAAAACT--T--------------------------------------------------A---------------A-------------ATAAATTTCAGAAGAAATTTTT---TTAAA-------------------------------------------------------------------A-----------------------------------------------------------------------A-------------GTTGA-----------ATTGCAATAA---CAATA
dm3 chr3RHet:2150770-2150992 - -----ACGGACAGACGGAAATGGCCAGATCGACTC-GGCTATTAATCCCGATCAAGAATATATATGCCTCATAGGGCCGGAAACG---------------CGTC----TGCCTC------TAACCTACTTTT-------CAAAGAA-TTATAATAATATTT--------ATT-----ATATAATAATAAT----------------------------------------------------------------AAT--------------------------AT--------------------------------AA------TAC---AAAAAATTTA-CTTTTCT------------------------------------TACGATAG---------------GAAC-------------------------------------------------------------------------------AGCT-TATCATTTAAGATAAT----GAAA-----------------------------------------------------------------------C-------------ATGTA------ACGA-AA---TAGAT---TGATG
droSim2 2l:21395219-21395500 - -----ACGGACAGAAGGACATGGCCAGATCGACTC-GGCTATTGATCCTATTCAAGAATATATATACTTTATATGGTCGGGAACG---------------CTTCATTCTGCCTACTTCCTTTGCATACTTAT-------TAACAAATCTAGTATACCCTTTTACTC--TACGAGTAACGGGTATAATAAA------TCCATCAGTT---------------------------------------------------TACCAGGAGTAATTACTATTAAATAGAA--------------------------------ACC----------------GTTTA-CACTGCT--------------------------------------------CATAATCTTGTTATTGCAT------------------------------TTTATAATGTTTAAAGA---A----------------------------AGCT--ATC----------------TATG-----------------------------------------------------------------------C-------------TTAAA-----------ATGGAAATGC---AAATG
droSec2 scaffold_40:13484-13766 - dse_1317 -----ACGGACAGGCGGACATGGCTAGATCGACTC-GGCTATTGATCCTGATCAAGAATATATATACTTTATATAATCGGAAACG---------------CTTCCTTCTGACTG------TTACATACTTTT-------TAACGAGTCTAGTATACCCTTTTAATC--TACGAATAACGGGTATAACAATA------ACTGTAATT-----------------------------------------------------------------ACCGCTAAGT--GTTGCACTTCCTTTAGCGGACTGACAGGTATCTTATAATTAATACC--CTAGAATTTA-TATTTT----------------------------------------------------------------------------------------------------------AAAGA-TA-----------------------------AGCT-AATCATT----------------A-----------------------------------------------------------------------T-------------TTATGGTACATTTGC-AG---AGTAA---TGATG
droYak3 2R:20334883-20335135 - GACAGACGGACAGACGGACATGGTCATATCGACTC-GGCTATTGGTCCTGATCAAGAATATATATACTTTATATGGTCGGAAACC---------------CTTCCTTCTGCCTG------TTACATACTTTT-------CAACGAATCTAGTATACCCTTTTACTC--TACGAGTAACGGGTATAAATATAATGAATGCATAGGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCATC----TGAATTTT---------------------------------------------------------------------AGTTCCATACTTCAA-----AAACT-AACCCTTTTAAGCAAGTGTAAGAG-----------------------------------------------------------------------C-------------ATACA-----------ACAGTTTTTG---AGATG
droEre2 scaffold_4845:9059768-9059980 - GACGGACGGACAGACGGATATGGCCAGATAGACTC-GGCTATTGTTCCTGATCAAGAATATATATACTTTATATGATCGGAAACG---------------TTTCCTTCTGCCTG------TTACATACTTTT-------CAACGAATCTAGTATACGCTCTTACC------A-----AAGACACTAGAATA------------------------------------------ATAAGATGCGTAACGCCATACGATTTCCGAC-------------------AG--------------------------------TA------AGT---TAAA-------CATTCTTCAG-------------------------------------------------------------------------------------------------GCTTT------------------------------------------AA------------------------------------------------------------------------------------------------------------------------------------------TTA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
GACGGACGGACAGACTGACAGGGCTATATCAACTC-AGCTCGTCGCCCTGATCAAGAATATATATACCTTATGGGGTCTGCGATG---------------ATTCCTTCTGCCTG------TTACATACTTTT-------CA-CAAAACCATTATACCGTGATATAC-------------------AAAACA---------TTAT---T----------------------TGATTTGTATTCGTAAGACCGACCAAT--------------------------AT--------------------------------TA------CAT---CGAAAATTTA-CATTTTT----------------------------------------------------------------------------------------------------------CAG--------------------------------AAGCC-AATCATTTAAAGAGGATGACGGTA-----------------------------------------------------------------------C-------------ATGGA-----------AAGGCAATGA---TGATGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................................................................................................................................................................AAAACA---------TTAT---T----------------------TGATTTGTATTCGTA..........................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTAAAGAGGATGACGGTA-----------------------------------------------------------------------................................................2011.001000001
..........................TATCAACTC-AGCTCGTCGCCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2190.111000010
GACGGACGGACAGACTGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.102110000
..........................................TCGCCCTGATCAAGAATATATATACC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26190.051000010
..................................................................................ATG---------------ATTCCTTCTGCCTG------TTAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
droVir3
GACGGACAGACAGACGGACATGGCTAGATCGACTC-GGCTATTCATACTGATCAAGAATATATATACTTTATGGGGTCGGAGATG---------------CTTCCTTCTGCCTG------TTACATACATTTGGATTTTGCACAAATACAATATACCCTTATATCCA-------------------------------------TTTTTAAT--------GGGTT----------------------------------------------------------------------------------------------------------------------------CAGGGTATAATCAAATGAAATAATGCAAAATAAATATATGTTAA---------------GAAA-------------------------------------------------------------------------------AATTTAAAAATTTAAAATAAATGAATATA----------------------------------------------------------------------------------------AA----------G-TTATTAAAA---AAATASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................................CAAGAATATATATACTTTATGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.70140000000000000000000000000000000000140000000000000000000000000000
.............................................................................................................................TACATTTGGATTTTGCACAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.204000000000000000000004000000000000000000000000000000000000000000
....................................................................................................................................................................CCA-------------------------------------TTTTTAAT--------GGGTT----------------------------------------------------------------------------------------------------------------------------CAGGGTAT..........................................................................................................................................................................................................................................................................................24200.204000000000000000000000004000000000000000000000000000000000000000
........................................................AATATATATACTTTATGGGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102000000000000000000000000002000000000000000000000000000000000000
..............................................................TATACTTTATGGGGTCGGAGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.102000000000000000000002000000000000000000000000000000000000000000
.............................................TACTGATCAAGAATATATATACTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000001000000000000000000000000000000000000
.....................GGCTAGATCGACTC-GGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................17200.051000000000000000000000000000000000000000000000100000000000000000
..................................................ATCAAGAATATATATACTTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000100000000000000000000000000000000000000
...............................................................................GAGATG---------------CTTCCTTCTGCCTG------T......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000000000010000000000000000000000000
.......................................................................TGGGGTCGGAGATG---------------CTTCCTTCTGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000000100000000000000000000000000000000
.............................................TACTGATCAAGAATATATAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000100000000000000000000000000000000000000
................................................................................................................TG------TTACATACATTTGGATTTTGCACAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051000000000000000000000000000100000000000000000000000000000000000
..............................................................................................................................ACATTTGGATTTTGCACAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051001000000000000000000000000000000000000000000000000000000000000
.............................................TACTGATCAAGAATATATATACTTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000100000000000000000000000000000000000
................................................................TACTTTATGGGGTCGGAGATG---------------CTTCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................TCCA-------------------------------------TTTTTAAT--------GGGTT----------------------------------------------------------------------------------------------------------------------------CAGGGTA...........................................................................................................................................................................................................................................................................................24200.051001000000000000000000000000000000000000000000000000000000000000
...GGACAGACAGACGGACATGGCTAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000010000000000000000000000000000000000
......CAGACAGACGGACATGGCTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000001000000000000000000000000000000000
droGri2
---------------------GGTTATATCGACTC-GCCTGTTGATCCTGATTAAGAATAAATATTATTTATGGGTTCGAAGAAG---------------CTTCTTCCTGCCTG------TTGCATACTTTT-------AAAGAAAACAATTATACATTTTGATAA--------------------A-----------------TTCTTCCT--------G-------GCTGATTGATATTAATA------------------------------------AAAG--------------------------------GCAATGA---------ATACTC--A--------------------------------------------------A---------------A-------------CTCAAACTCAAACAAAATTTGT---GGTATTTATTGAATGGGAAT------------------------------AAC----------------ATTA---------------------------TA--------------------------------------------------------GTTGT-----------AAGTCAATTG---TAATASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
GACGGACGGACGGACGGACATGGCTATTTGAACTC-GTCTCGTCGTGCTGATCAAGAATATATATACTTTATATGGTCGGAGATG---------------CTTCCTTCTATGCG------TTGCATACTTTT-------GACCAAAATTAATATACCCTTTTT------GCA-----AGGGTATAAATATTA--------TGAATT------------------------GGATGTATGTTTTTA------------------------------------TAAA--------------------------------CTGTTGA---------ATTATA--T--------------------------------------------------A---------------C-------------CTATAGATTAGATTAAACACTTTAAAATAAC----AAAAAAGAAT------------------------------AAA----------------AGTA-----------------------------------------------------------------------A-------------ATGAA-----------GAATAAATAA---TAATASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................................................ACTTTATATGGTCGGAGATG---------------CTTCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.25505000
.....................................................................................................TTCCTTCTATGCG------TTGCATACTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2460.17100010
..........................TTTGAACTC-GTCTCGTCGTGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.15300030
...........................TTGAACTC-GTCTCGTCGTGCTGATC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.10202000
............................TGAACTC-GTCTCGTCGTGCTGATC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.10202000
.............................................................................CGGAGATG---------------CTTCCTTCTATGCG------TTGCAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28140.07100010
................................................................TACTTTATATGGTCGGAGATG---------------C..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05101000
........................TATTTGAACTC-GTCTCGTCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05110000
.......................................TCGTCGTGCTGATCAAGAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100100
......................................................................ATATGGTCGGAGATG---------------CTTCCTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05100100
dp5
GACGGACAGACAGAC---CAGGGCTCAATCGTCTC-GGCTATTGATGCTGATCAAGAATATATATACTTTATGGGGTCGGAAATCGGAATCGGTCGGAATCGTTCTTCTGGACG------TTACACACATCCGTTTTCACCACAAATCTAATATACCCCTCTACTCATATTGAGTATCGGGTATAACAAA------ACT-GCAA-------TAGAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCATT----CG--------------------------------------------------------------------------------------------------------------------------------------------------AATTAAAAAGA---GTTGA--A--TGA-------------------------------------GTACGATGTGTATGC-GAGAAAGTGT---TGGTTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................TCAAGAATATATATACTTTATGGGGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27201.102202200000000
............................................................................TCGGAAATCGGAATCGGTCGGAATC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000010
..CGGACAGACAGAC---CAGGGCTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000000
.............................................................................................TCGGAATCGTTCTTCTGGACG------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000100
...GGACAGACAGAC---CAGGGCTCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.........................................................ATATATATACTTTATGGGGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.751501500000000
........................................................................................................................................TCACCACAAATCTAATATACCCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.50100000000550
......................................CTATTGATGCTGATCAAGAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.4080800000000
............................................................TATATACTTTATGGGGTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.3060600000000
........................................................................................................................................TCACCACAAATCTAATATACC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.3060040000020
...................................................TCAAGAATATATATACTTTATGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.2550500000000
................................................TGATCAAGAATATATATACTTTATGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.1530300000000
..........................................TGATGCTGATCAAGAATAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1530300000000
.......................CTCAATCGTCTC-GGCTATTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2080.1310100000000
..................................................................................................................................................................ACTCATATTGAGTATCGGGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2090.1110100000000
........................................................................................................................................TCACCACAAATCTAATATAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1020200000000
.............................................................ATATACTTTATGGGGTCGGAAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23160.0610100000000
....................................GGCTATTGATGCTGATCAAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000001000
........................................................................................................................................TCACCACAAATCTAATATACCCCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510100000000
.......................................................GAATATATATACTTTATGGGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510100000000
.................................................GATCAAGAATATATATACTTTATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510100000000
..........................................................TATATATACTTTATGGGGTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000010000
......................................................................................................TTCTTCTGGACG------TTACACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510100000000
............................................................TATATACTTTATGGGGTCGGAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510010000000
......................................................................................................................................TTTCACCACAAATCTAATATACCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510010000000
.........................................................ATATATATACTTTATGGGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510100000000
...........................................................ATATATACTTTATGGGGTCGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000010000
....................................................CAAGAATATATATACTTTATGGGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510000100000
droPer2
GACGGACGGACAGACAGACAGGGCTCAATCGACTC-GGCTATTGATGCTGATCAAGAATATATATACTTTATAGGGTCGGAAACG---------------ATTCCTTCTGGACG------TTACACACATCCACTTTTACCACAAATCTAATATACCCCAATACTCATTTTGAGTATCGGGTATAATTAA--------CAAAAATT-----------------------------------------------------------------AGCACAA--------------------------------------------------------AAAT---------------------------------------------TGTATTACA-CGTTTTTTTGTTTTTAAAC-------------------------------------------------------------------------------ACCT-TATCGTTTTAAG---GTGTAAGAGTGA-AT-----------------------------------------------------------------T-------------TTCAT------AAA--A-----ATGTGAATGTTASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................................................................................................................................TACTCATTTTGAGTATCGGGTATAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.75150150000
....................................................................................................................................................TAATATACCCCAATACTCATTTTGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.459090000
....................................................................................................................................................TAATATACCCCAATACTCATTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051010000
droAna3
-----ACAGACAGACGGACATGCTTATATCGACTC-GG--GGTGATCCTGATCAAGAATATATATACTTTATAGGGTCGGAGATG---------------TCTCCTTCCCTGCG------TTGCACACTTTT-------GACCAAAATTATAATACCCTCT--------GCA-----AGGGTATAAAAATC-----------AATT---------------------------------------------------------------------------AAT-CTTATTT------------------------------------TATT--GTTT------------------------------------------------------------TAGCAC-----------------------TTTCAGTCAATATTTTT---------------------------------------------------------TTCTC---------------------------------------AATAAATGGAATAGCTCAAGAAACGGTCTTTAAAAAATCTGACAGCC-------------ATGGA-----------AAGTTAATGT---GTATGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................................................................TG---------------TCTCCTTCCCTGCG------TTGCACACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25180.224040000
....................................................................................................TCTCCTTCCCTGCG------TTGCACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.153300000
...................................................................TTTATAGGGTCGGAGATG---------------TC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.153000030
...................................................................................TG---------------TCTCCTTCCCTGCG------TTGCACACTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27150.132110000
....................................................................................................TCTCCTTCCCTGCG------TTGCACACTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25150.132110000
......................................................................................................TCCTTCCCTGCG------TTGCACACTTTT-------GACC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2880.131010000
...................ATGCTTATATCGACTC-GG--G......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19100.101001000
.................................................................................GATG---------------TCTCCTTCCCTGCG------TTGCACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.102110000
.........................................................................................................TTCCCTGCG------TTGCACACTTTT-------GACCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26110.091010000
..............CGGACATGCTTATATCGACTC-GG--.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23120.081010000
............GACGGACATGCTTATATCGACTC-GG--.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25120.081010000
..........................................................................................................TCCCTGCG------TTGCACACTTTT-------GACC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24130.081010000
..........................................................................................................TCCCTGCG------TTGCACACTTTT-------GACCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26130.081010000
.....................................................................................................CTCCTTCCCTGCG------TTGCACACTTTT-------GAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28130.081100000
......................................................................................................TCCTTCCCTGCG------TTGCACACTTTT-------GA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26140.071100000
....................................................................................G---------------TCTCCTTCCCTGCG------TTGCACACTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26150.071010000
....................................................................................G---------------TCTCCTTCCCTGCG------TTGCACACTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25170.061100000
.........................................................................................................TTCCCTGCG------TTGCACACTTTT-------G...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22170.061100000
....................................................................................................TCTCCTTCCCTGCG------TTGCACACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23180.061100000
.................................................................................GATG---------------TCTCCTTCCCTGCG------TTGCACAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26190.051010000
............................................................................TCGGAGATG---------------TCTCCTTCCCTGCG------TT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051010000
.................................................................................GATG---------------TCTCCTTCCCTGCG------TTGCAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051100000
...................................................................................TG---------------TCTCCTTCCCTGCG------TTGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
....................................................................................G---------------TCTCCTTCCCTGCG------TTGCACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051100000
.....ACAGACAGACGGACATGCTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000010
....................................................................................................TCTCCTTCCCTGCG------TTGCACG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
.................................................................................GATG---------------TCTCCTTCCCTGCG------TTGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051010000
...................................................................................TG---------------TCTCCTTCCCTGCG------TTGCACAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051010000
....................................................................................G---------------TCTCCTTCCCTGCG------TTGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
...................................................................................TG---------------TCTCCTTCCCTGCG------TTGCACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051001000
droBip1
GACAGACGGACAGACGGACATGCTCATATCAACTC-AGGAGGTGATCCTGATCAAGAATATATATACTTTATAGGGTCGGAGATG---------------TCTCCTTCACTGCG------TTGCACACTTTT-------GGACAAAATTATAATACCCTCT--------GCA-----AGGGTATAAAAAA------AGCATAGATTTTTTAT--------TTGTTT--AG---------------------------------GA----ATACAATTAAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTAGCAGTAA-AATGTTTTTCATATGCGAATCAATAAAA---ATTAA--T--CGACTGTA------------------C-------------TTGAA-----------ATGCCG-----------ASizeHit CountTotal NormTotal
No Reads
droKik1
GACGGACGGACAGACGGACATGGCTAGATCGACTCTCGCTATTGATGCTGATCGAGAATATATATACTTTATAGGGTCGGAAACG---------------TCTCCTTCACTGCA------TTGCAAAATTCT-------GACTGAAATTATTATACCCT----------GCA-----AGGGTATAAAAACT----------AG-T--TTTAT--------TCGTTTGGGCTACACAGT----------------------------------------------------------------------------------------------------------------------------------------------------------------TTT---------------------------------------------------------------------ATTTCGGCATTTAAAAAAAAAAGCT-TATATCTCAAAGTAGCTGAAAATA-----------------------------------------------------------------------C-------------GTTGA-----------AAAACAACG--------ASizeHit CountTotal NormTotal
No Reads
droFic1
GACAGGAGGACAGACGGACAGACGTATTTCGATTC-AGATGGTGATGCTGATCAAGAATATATATACTTTATCGGGTCTGAGGTG---------------CTTCCTTCACTGCG------TTGCAAACTTCT-------GACTGAAATTATAATACCCTTTTGCTC--TGCA-----AGGGTATAATAAA------AGCAAAGATT---------------------------------------------------TGCC----------------------T-CACATTT------------------------------------CTTT--GAATTTA-CATTTT----------------------------------------------------------------------------------------------------------GAAGC-CAA---------------------------------AATTATTCAC-------AACG----------------------------------------------------------------------------------------GTAGA-----------GAAA--AAGCGAATAAAASizeHit CountTotal NormTotal
No Reads
droEle1
-ACGGACGGACAGACGGACATGGCTAGATCGACTC-TGCTAGTGATGCTGATCAAGAATATATATACTTTATAGGGTCAGAAATG---------------TCTCCTTCACTGCG------TTGCAAACTTCT-------GACTGAAATTATAATACCCTCT-------------------GTATAAAAACA------TG-ACAA-------TAGACTCCA----------------------------------AAT--------------------------AT--------------------------------AA------CAT---CAAAAATT--C--------------------------------------------------A---------------GAAG-------------------------------------AATTTAACGA-CAAAATC------------------------------AAC----------------AACA-----------------------------------------------------------------------C-------------ATATA-----------TTGGCGACGA---TGAAASizeHit CountTotal NormTotal
No Reads
droRho1
GACAGACGGACAGACGGACATGGCTATATCAACTC-AGGAGGTGATCCTGATCAAGAATATATATACTTTATAGGGTCGGAGATG---------------TCTCCTTCACTGCG------TTGCACACTTTT-------GACCAAAATTATAATACCCTCT--------GCA-----AGGGTATAAAAATAT---------G--TA---------TTTCTTAGTTTTCGG-----------------------------------------------------------------------------------------------------TACAAACC--C--------------------------------------------------A---------------G-----------------AAGTGTGATTA-------------------TAA-CGTATACTTTATTTCGT-----------------G-AGTT-----------------------TG----------------ATTCGAAGAAA----------------------------------------ATGTGGATATGTG---------------GAAAACAGGGA---GAAGGSizeHit CountTotal NormTotal
No Reads
droBia1
-ACGGACGGACATACGGACATGACTAGATCGACTC-GTCTTGTGACGCTGATTAAGAATATATATACTTTATGGGATCGGAAACG---------------TCTCCATCACTGCG------TTGCAAACTTCT-------GACTGAATTCATTATACCCTCT--------GCA-----AGGGTATAAAAAA------ATTATAGCTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGGGCTTTTAGACATATTATCTTATAATATTGAGAATATAATTTT---T------TAAGA-----------ATT-------------------TCG-AATT-----------------------CA----------------ATTTAATAAAA----------------------------------------GTGATAACATACA---------------GATGGCAAAAA---AAATGSizeHit CountTotal NormTotal
No Reads
droTak1
GACAGACGGACAGACGGACATGGCTAGATCGACTC-GGCTAGTGATCCTGATCAAGAATATATATACTTTATGGGGTCGGAAACG---------------CTTCCTTCTCCCTG------TTACATACTTTT-------GCACGAATACAATATACCCTTTTACTC--TACGAGTAACGGGTATAAAAACAT---------CGATA---------TTTCTCAACATCTAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACTCAAATAGGGTGACCATT-----------------------------------------------------------------------T-------------TTAAA-----------AAATATACGA---TACTTSizeHit CountTotal NormTotal
No Reads
droEug1
-----ACAGACAGACGGATACGGCTTAATCGACTT-CGCTATTGATACTGATCAAGAATATATATACTTTATAGGGCCAGAGAAG---------------CATCCTTCTACCTG------TTACATACTTTT-------CAACGAATCTAGTATACCCTTATACAC--TACGAGTATCGGGTATAAAAATAT-----ACAACAATT---------------------------------------------------------------------------AAAG--------------------------------AA------AAT---TAAAAACT--T--------------------------------------------------A---------------A-------------ATAAATTTCAGAAGAAATTTTT---TTAAA-------------------------------------------------------------------A-----------------------------------------------------------------------A-------------GTTGA-----------ATTGCAATAA---CAATASizeHit CountTotal NormTotal
No Reads
dm3
-----ACGGACAGACGGAAATGGCCAGATCGACTC-GGCTATTAATCCCGATCAAGAATATATATGCCTCATAGGGCCGGAAACG---------------CGTC----TGCCTC------TAACCTACTTTT-------CAAAGAA-TTATAATAATATTT--------ATT-----ATATAATAATAAT----------------------------------------------------------------AAT--------------------------AT--------------------------------AA------TAC---AAAAAATTTA-CTTTTCT------------------------------------TACGATAG---------------GAAC-------------------------------------------------------------------------------AGCT-TATCATTTAAGATAAT----GAAA-----------------------------------------------------------------------C-------------ATGTA------ACGA-AA---TAGAT---TGATGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................TCCCGATCAAGAATATATATGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000100020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................AACG---------------CGTC----TGCCTC------TAACCTACTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................CTTTTCT------------------------------------TACGATAG---------------GAAC-------------------------------------------------------------------------------AG..................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000
..............................................................TATGCCTCATAGGGCCGGAAACG---------------CGTC----...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.......................................TATTAATCCCGATCAAGAATATATA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................TACGATAG---------------GAAC-------------------------------------------------------------------------------AGCT-TATCATTTAAGA...................................................................................................................................2812.0020000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
................................................................TGCCTCATAGGGCCGGAAACG---------------CGTC----...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................GAAATGGCCAGATCGACTC-GG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2151.4070000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000020000000000000100000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAGATAAT----GAAA-----------------------------------------------------------------------C-------------ATGTA------.......................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................TATATGCCTCATAGGGCCGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----GAAA-----------------------------------------------------------------------C-------------ATGTA------ACGA-AA---TAGAT---TGAT.2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.............................................TCCCGATCAAGAATATATATGCCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................ACTC-GGCTATTAATCCCGATCAAGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................GAATATATATGCCTCATAGGGCCGGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................TCCCGATCAAGAATATATATGCCTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................CCCGATCAAGAATATATATGCCTCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................TAATCCCGATCAAGAATATATATGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................TA-CTTTTCT------------------------------------TACGATAG---------------GAAC-------------------------------------------------------------------------------....................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................TATGCCTCATAGGGCCGGAAACG---------------CG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................AAC-------------------------------------------------------------------------------AGCT-TATCATTTAAGATAAT----GAAA-----------------------------------------------------------------------................................................2711.0010000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................TC----TGCCTC------TAACCTACTTTT-------CAAAGAA-T...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................CG---------------CGTC----TGCCTC------TAACCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................CAAGAATATATATGCCTCATAGGGCCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----GAAA-----------------------------------------------------------------------C-------------ATGTA------ACGA-AA---TAGAT---TGATG2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................CTATTAATCCCGATCAAGAATATA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.............................................TCCCGATCAAGAATATATATGCCTCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................TATATGCCTCATAGGGCCGGAAACG---------------CG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................TATGCCTCATAGGGCCGGAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................TGCCTC------TAACCTACTTTT-------CAAAGAA-............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................T------------------------------------TACGATAG---------------GAAC-------------------------------------------------------------------------------AGCT-TATC...........................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
........................CAGATCGACTC-GGCTATTAATCCCGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................TTCT------------------------------------TACGATAG---------------GAAC-------------------------------------------------------------------------------AGT.................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................T------------------------------------TACGATAG---------------GAAC-------------------------------------------------------------------------------AGCT-TAA............................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................TGCCTCATAGGGCCGGAAACG---------------CGTC----T..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..........CAGACGGAAATGGCCAGATCGACTC-...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................TA-CTTTTCT------------------------------------TACGATAG---------------GAAC-------------------------------------------------------------------------------AGC.................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTA------ACGA-AA---TAGAT---TGATG2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
........GACAGACGGAAATGGCCAGATCGACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2621.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................GAAATGGCCAGATCGACTC-GGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2230.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........CAGACGGAAATGGCCAGATCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................AAATGGCCAGATCGACTC-GGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2230.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................GATCGACTC-GGCTATTAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18130.3140000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................CCAGATCGACTC-GGCTATTAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21100.2020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000
.......................CCAGATCGACTC-GGCTATTAATC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2350.2010000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................AGATCGACTC-GGCTATTAATC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2170.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................ATCCCGATCAAGAATATATAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2170.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................CAGATCGACTC-GGCTATTAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2170.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................ATCGACTC-GGCTATTAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................17140.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................TCGACTC-GGCTATTAATC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TGGCCAGATCGACTC-GGCTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................ATAATAATAAT----------------------------------------------------------------AAT--------------------------AT--------------------------------AA------TAC---....................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
-----ACGGACAGAAGGACATGGCCAGATCGACTC-GGCTATTGATCCTATTCAAGAATATATATACTTTATATGGTCGGGAACG---------------CTTCATTCTGCCTACTTCCTTTGCATACTTAT-------TAACAAATCTAGTATACCCTTTTACTC--TACGAGTAACGGGTATAATAAA------TCCATCAGTT---------------------------------------------------TACCAGGAGTAATTACTATTAAATAGAA--------------------------------ACC----------------GTTTA-CACTGCT--------------------------------------------CATAATCTTGTTATTGCAT------------------------------TTTATAATGTTTAAAGA---A----------------------------AGCT--ATC----------------TATG-----------------------------------------------------------------------C-------------TTAAA-----------ATGGAAATGC---AAATGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................TACTTTATATGGTCGGGAACG---------------CTTCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000010000000
.........ACAGAAGGACATGGCCAGATCGAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.50100000000000010000
..........................GATCGACTC-GGCTATTGATCCTAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.50100000000001000000
........GACAGAAGGACATGGCCAGATCGACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2630.33100000000000010000
................................................................TACTTTATATGGTCGGGAACG---------------CTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2440.25100000010000000000
....................................................................................................................................................TAGTATACCCTTTTACTC--TACGAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.25500000000050000000
.......................................................GAATATATATACTTTATATGGTCGGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2740.25100000000000010000
........GACAGAAGGACATGGCCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1840.25100000000001000000
............................................................TATATACTTTATATGGTCGGGAACG---------------C..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2640.25100000010000000000
.........................................................ATATATATACTTTATATGGTCGGGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2640.25100000010000000000
..........................................................TATATATACTTTATATGGTCGGGAACG---------------C..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2840.25100000010000000000
..........................GATCGACTC-GGCTATTGATCCTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23120.17200000000002000000
...................................................................................................................................T-------TAACAAATCTAGTATACCCTTTTACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2760.17100000001000000000
.................................................................................................................................................................TACTC--TACGAGTAACGGGTATAATAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.15300000000002001000
.........................................................ATATATATACTTTATATGGTCGGGTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2680.13100000000000010000
....................................................................................................................................................................TC--TACGAGTAACGGGTATAATAAA------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2480.13100000010000000000
..........................GATCGACTC-GGCTATTGATCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.10200000000000020000
............................TCGACTC-GGCTATTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15200.10200000002000000000
................................................................TACTTTATATGGTCGGGAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20170.06100000000100000000
...................................................................................................................................................CTAGTATACCCTTTTACTC--TACGAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05100000000000010000
........................................................................................................................................................................TACGAGTAACGGGTATAATAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100000010000000000
..............................................................................................................................................................TTTTACTC--TACGAGTAACGGGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05100000001000000000
.......................................................GAATATATATACTTTATATGGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100000000000010000
......................GCCAGATCGACTC-GGCTATTGATC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100000000001000000
............................TCGACTC-GGCTATTGATC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100000001000000000
...................ATGGCCAGATCGACTC-GGCTATTGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100000000010000000
.................................................................................................................................................................TACTC--TACGAGTAACGGGTATAATA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100000010000000000
......................................................................................................................................................GTATACCCTTTTACTC--TACGAGTAACGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.05100000001000000000
droSec2
-----ACGGACAGGCGGACATGGCTAGATCGACTC-GGCTATTGATCCTGATCAAGAATATATATACTTTATATAATCGGAAACG---------------CTTCCTTCTGACTG------TTACATACTTTT-------TAACGAGTCTAGTATACCCTTTTAATC--TACGAATAACGGGTATAACAATA------ACTGTAATT-----------------------------------------------------------------ACCGCTAAGT--GTTGCACTTCCTTTAGCGGACTGACAGGTATCTTATAATTAATACC--CTAGAATTTA-TATTTT----------------------------------------------------------------------------------------------------------AAAGA-TA-----------------------------AGCT-AATCATT----------------A-----------------------------------------------------------------------T-------------TTATGGTACATTTGC-AG---AGTAA---TGATGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................................................................................................TCCTTCTGACTG------TTACATACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21130.0811000
................GACATGGCTAGATCGACTC-GGCTATT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.0510010
................GACATGGCTAGATCGACTC-GG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510100
..............CGGACATGGCTAGATCGACTC-GGCTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.0510010
..............CGGACATGGCTAGATCGACTC-GGCTAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.0510010
..............................GACTC-GGCTATTGATCCTGATCAAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.0511000
............................TCGACTC-GGCTATTGATCCTGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510001
droYak3
GACAGACGGACAGACGGACATGGTCATATCGACTC-GGCTATTGGTCCTGATCAAGAATATATATACTTTATATGGTCGGAAACC---------------CTTCCTTCTGCCTG------TTACATACTTTT-------CAACGAATCTAGTATACCCTTTTACTC--TACGAGTAACGGGTATAAATATAATGAATGCATAGGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCATC----TGAATTTT---------------------------------------------------------------------AGTTCCATACTTCAA-----AAACT-AACCCTTTTAAGCAAGTGTAAGAG-----------------------------------------------------------------------C-------------ATACA-----------ACAGTTTTTG---AGATGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................................................................................................TCCTTCTGCCTG------TTACATACTTTT-------CAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.10200200000000
................................................................................................................................TTTT-------CAACGAATCTAGTATACCCTTTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05100100000000
......................................................................ATATGGTCGGAAACC---------------CTTCCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100000010000
.................................TC-GGCTATTGGTCCTGATCAAGAATAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05100010000000
............GACGGACATGGTCATATCGACTC-...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100100000000
.....................................................................................................................................................................C--TACGAGTAACGGGTATAAATAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100000010000
............GACGGACATGGTCATATCGACTC-GGCTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.05100100000000
droEre2
GACGGACGGACAGACGGATATGGCCAGATAGACTC-GGCTATTGTTCCTGATCAAGAATATATATACTTTATATGATCGGAAACG---------------TTTCCTTCTGCCTG------TTACATACTTTT-------CAACGAATCTAGTATACGCTCTTACC------A-----AAGACACTAGAATA------------------------------------------ATAAGATGCGTAACGCCATACGATTTCCGAC-------------------AG--------------------------------TA------AGT---TAAA-------CATTCTTCAG-------------------------------------------------------------------------------------------------GCTTT------------------------------------------AA------------------------------------------------------------------------------------------------------------------------------------------TTASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................TC-GGCTATTGTTCCTGATCAAGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2441.0040000004
.......GGACAGACGGATATGGCCAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20160.0610000010

Generated: 05/18/2015 at 01:11 AM