ID:

dmo_1744

 Coordinate:

scaffold_6540:611428-611578 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-12.1 -12.0 -12.0 -11.9

Flybase annnotation

CDS [Dmoj\GI23807-cds]; exon [dmoj_GLEANR_8985:2]; intron [Dmoj\GI23807-in]

No Repeatable elements found

mature
  1. scaffold_4193:42116-42142 -
  2. scaffold_6262:13838-13864 -
  3. scaffold_6427:758-784 -
  4. scaffold_6482:2458141-2458167 +
  5. scaffold_6496:648813-648839 -
  6. scaffold_6496:3980085-3980111 +
  7. scaffold_6496:7517234-7517260 +
  8. scaffold_6496:22295440-22295466 +
  9. scaffold_6500:1746228-1746254 +
  10. scaffold_6500:6045636-6045662 +
  11. scaffold_6500:28779480-28779506 -
  12. scaffold_6500:30582814-30582840 +
  13. scaffold_6500:32148788-32148814 +
  14. scaffold_6540:561428-561454 -
  15. dmo_1744  scaffold_6540:611466-611492 +
  16. scaffold_6540:1465839-1465865 +
  17. scaffold_6540:1690853-1690879 +
  18. scaffold_6540:7284183-7284209 -
  19. scaffold_6541:1469849-1469875 -
  20. scaffold_6541:1507522-1507548 +
  21. scaffold_7:3058-3084 -
  22. scaffold_6473:3039482-3039508 -
  23. scaffold_6482:2459055-2459081 -
  24. scaffold_6496:287063-287089 -
  25. scaffold_6498:362566-362592 -
  26. scaffold_6540:1175658-1175684 -
  27. scaffold_6540:11502120-11502146 -
  28. scaffold_6540:17266896-17266922 -
  29. scaffold_6665:5730-5756 -
star
  1. scaffold_6473:2228613-2228638 +
  2. scaffold_6482:526136-526161 -
  3. scaffold_6482:2639436-2639461 -
  4. scaffold_6496:648750-648775 -
  5. scaffold_6496:3980149-3980174 +
  6. scaffold_6496:7517298-7517323 +
  7. scaffold_6496:22295504-22295529 +
  8. scaffold_6498:412324-412349 +
  9. scaffold_6498:2815039-2815064 +
  10. scaffold_6500:1746292-1746317 +
  11. scaffold_6500:6045700-6045725 +
  12. scaffold_6500:28779417-28779442 -
  13. scaffold_6500:29234693-29234718 +
  14. scaffold_6500:30582878-30582903 +
  15. scaffold_6500:32148852-32148877 +
  16. dmo_1744  scaffold_6540:611530-611555 +
  17. scaffold_6540:1465903-1465928 +
  18. scaffold_6540:1690917-1690942 +
  19. scaffold_6540:7284120-7284145 -
  20. scaffold_6541:1507586-1507611 +
  21. scaffold_6482:2614236-2614261 -
  22. scaffold_6498:1071289-1071314 -
  23. scaffold_6427:695-720 -
  24. scaffold_6541:1469790-1469815 -
  25. scaffold_6665:5667-5692 -
  26. scaffold_6680:24387189-24387214 -
  27. scaffold_6482:2458992-2459017 -
  28. scaffold_6540:561365-561390 -
  29. scaffold_6540:1175595-1175620 -

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GAAGATGGCGCGGAACGAGAGGCGTTCCTTCCGTCCTGCGGAATTGGACGGTGCGCCCGGCTGGCAGTGTTGCCGAAACTTTTTCAGCAAAAGTAGCAAAACCGAAGGCTGAAAGTAGCTAGAAGTAGCCAACTTTCTTCTAAAATAGCTGAAAAAGTAGCAAAAAAGAAAACAGTGCTGTTTTTTCATATAAAGTCAACTTTATTAATTTAATTCTAATAATATCTAATCTATGACCACCAGCTCGTCAT
****************************************************************************************....((.............((......((((((((((.((....))..))))).....)))))........))...............))************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body		 V056
head
 V041
embryo
 V049
head
........................................................................................AAAAGTAGCAAAACCGAAGGCTGAAAG........................................................................................................................................ 27 0 20 2.05 41 37 0 4 0 0 0
........................................................................................................................................................AAAAGTAGCAAAAAAGAAAACAGTGC......................................................................... 26 0 20 1.40 28 7 18 2 0 1 0
.....................................................................................................................................................TGAAAAAGTAGCAAAAAAGAAAACAG............................................................................ 26 0 20 1.15 23 21 2 0 0 0 0
.....................................................................................................................................................TGAAAAAGTAGCAAAAAAGAAAACAGT........................................................................... 27 0 20 1.05 21 21 0 0 0 0 0
........................................................................................AAAAGTAGCAAAACCGAAGGCTG............................................................................................................................................ 23 0 20 0.60 12 12 0 0 0 0 0
.....................................................................................................................................................TGAAAAAGTAGCAAAAAAGAAAACAGTG.......................................................................... 28 0 20 0.30 6 4 2 0 0 0 0
.....................................................................................................................................................TGAAAAAGTAGCAAAAAAGAAAACA............................................................................. 25 0 20 0.30 6 6 0 0 0 0 0
........................................................................................AAAAGTAGCAAAACCGAAGGCTGAAA......................................................................................................................................... 26 0 20 0.25 5 3 0 2 0 0 0
..................................................................................TTCAGCAAAAGTAGCAAAACCGAAGGC.............................................................................................................................................. 27 0 20 0.20 4 2 2 0 0 0 0
.....................................................................................................................................................TTAAAAAGTAGCAAAAAAGAAAACAGTGC......................................................................... 29 1 20 0.20 4 0 4 0 0 0 0
........................................................................................................................................................................................................................TGATAATATCTAATCTATGACCACCAGC....... 28 1 20 0.15 3 3 0 0 0 0 0
........................................................................................AAAAGTAGCAAGACCGAAGGCTGAAAG........................................................................................................................................ 27 1 20 0.15 3 3 0 0 0 0 0
..................................................................................TTCAGCAAAAGTAGCAAAACCGAAGG............................................................................................................................................... 26 0 20 0.15 3 1 1 1 0 0 0
.........................................................................................AAAGTAGCAAAACCGAAGGCTGAAAG........................................................................................................................................ 26 0 20 0.15 3 3 0 0 0 0 0
.......................................................................................CAAAAGTAGCAAAACCGAAGGCTGAAAG........................................................................................................................................ 28 0 20 0.10 2 2 0 0 0 0 0
...................................................................................................................TAGCTAGAAGTAGCCAACTTTCTTC............................................................................................................... 25 0 20 0.10 2 1 1 0 0 0 0
.........................................................................................................................................................AAAGTAGCAAAAAAGAAAACAGTGC......................................................................... 25 0 20 0.10 2 0 2 0 0 0 0
............................................................................................................................................TAAAATAGCTGAAAAAGTAGCA......................................................................................... 22 0 20 0.10 2 2 0 0 0 0 0
........................................................................................................................................................AAAAGTAGCAAAAAAGAAAACAGT........................................................................... 24 0 20 0.10 2 2 0 0 0 0 0
........................................................................................................................................................AAAAGTAGCAAAAAAGAAAACAGTGCTG....................................................................... 28 0 20 0.10 2 2 0 0 0 0 0
........................................................................................AAAAGTAGCAAAACCGAAGGCTGAAAGT....................................................................................................................................... 28 0 20 0.10 2 0 0 2 0 0 0
........................................................................................AAAAGTAGCAAAACCGAAGGCTGA........................................................................................................................................... 24 0 20 0.10 2 0 1 1 0 0 0
...............................................................................................................................GCCAACTTTCTTCTAAAATAGCTGAAA................................................................................................. 27 0 20 0.10 2 2 0 0 0 0 0
......................................................................................................................................................GAAAAAGTAGCAAAAAAGAAAACA............................................................................. 24 0 20 0.10 2 2 0 0 0 0 0
.....................................................................................................................................................TTAAAAAGTAGCAAAAAAGAAAACAG............................................................................ 26 1 20 0.10 2 0 2 0 0 0 0
...............................................................GCAGTGTTGCCGAAACTTTTTCAGC................................................................................................................................................................... 25 0 12 0.08 1 1 0 0 0 0 0
........................................................................................AAAAGTAGCAAAACCGAAGGCTAAAAG........................................................................................................................................ 27 1 20 0.05 1 0 1 0 0 0 0
................................................................................TTTTCAGCAAAAGTAGCAAAACCGAAGG............................................................................................................................................... 28 0 20 0.05 1 1 0 0 0 0 0
.....................................................................................................................................................TTAAAAAGCAGCAAAAAAGAAAACAGT........................................................................... 27 2 20 0.05 1 0 1 0 0 0 0
............................................................................................................................................TAAAATAGCTGAAAAAGTAGT.......................................................................................... 21 1 20 0.05 1 0 1 0 0 0 0
..................................................................................TTCAGCACAAGTAGCAAAACCGAAGGCT............................................................................................................................................. 28 1 20 0.05 1 0 1 0 0 0 0
........................................................................................................................................................AAATGTAGCAAAAAAGAAAACAGT........................................................................... 24 1 20 0.05 1 0 1 0 0 0 0
.........................................................................................................................................................AAAGTAGCAAAAAAGAAAACA............................................................................. 21 0 20 0.05 1 1 0 0 0 0 0
.............................................................................................................................................................TAGCAAAAAAGAAAACAGTGCTGT...................................................................... 24 0 20 0.05 1 1 0 0 0 0 0
..................................................................................................................................AACTTTCTTCTAAAATAGC...................................................................................................... 19 0 20 0.05 1 1 0 0 0 0 0
........................................................................................AGAAGTAGCAAAACCGAAGGCTGA........................................................................................................................................... 24 1 20 0.05 1 0 1 0 0 0 0
.....................................................................TTGCCGAAACTTTTTCAGCAAAAGTAGC.......................................................................................................................................................... 28 0 20 0.05 1 1 0 0 0 0 0
....................................................................GTTGCCGAAACTTTTTCAGCAAAAGT............................................................................................................................................................. 26 0 20 0.05 1 1 0 0 0 0 0
........................................................................................AAAAGTAGCAAAACCGAAGAC.............................................................................................................................................. 21 1 20 0.05 1 0 1 0 0 0 0
.............................................................................................................................................................TAGCAAAAAAGAAAACAGTGC......................................................................... 21 0 20 0.05 1 0 1 0 0 0 0
........................................................................................................................................................AAAGGTAGCAAAAAAGAAAACAGTG.......................................................................... 25 1 20 0.05 1 1 0 0 0 0 0
........................................................................................AAAAGTAGCAAAACCGAAGGCT............................................................................................................................................. 22 0 20 0.05 1 0 1 0 0 0 0
.......................................................................................................................................................AAAAAGTAGCAAAAAAGAAAACAGT........................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
.......................................................................................................................................................AAAAAGTAGCAAAAAAGAAAACAGTGC......................................................................... 27 0 20 0.05 1 0 0 1 0 0 0
....................................................................................................................................................TTGAAAAAGTAGCAAAAAAGAAAACAGT........................................................................... 28 1 20 0.05 1 1 0 0 0 0 0
.....................................................................................................................................................TGATAAAGGAGCAAAAAAGAAAACAGC........................................................................... 27 3 20 0.05 1 0 1 0 0 0 0
.............................................................................................................................TAGCCAACTTTCTTCTAAAATAGCT..................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
...............................................................................TTTTTCAGCAAAAGTAGCAAAACCGAAGG............................................................................................................................................... 29 0 20 0.05 1 1 0 0 0 0 0
....................................................................................AAGCAAAAGTAGCAAAACCGAAGGCT............................................................................................................................................. 26 1 20 0.05 1 1 0 0 0 0 0
..............................................................................................AGCAAAACCGAAGGCTGAA.......................................................................................................................................... 19 0 20 0.05 1 1 0 0 0 0 0
........................................................................................................................................................AGAAGTAGCAAAAAAGAAAACAGTGC......................................................................... 26 1 20 0.05 1 0 1 0 0 0 0
.....................................................................................................................................................TGAAAAAGTAGTAAAAAAGAAAACAG............................................................................ 26 1 20 0.05 1 1 0 0 0 0 0
.........................................................................................................................................................AAAGTAGCAAAAAAGAAAACAGC........................................................................... 23 1 20 0.05 1 0 1 0 0 0 0
.........................................................................................AAAGTAGCAAAACCGAAGGCTG............................................................................................................................................ 22 0 20 0.05 1 1 0 0 0 0 0
...................................................................................TCAGCAAAAGTAGCAAAACCGAAGGCT............................................................................................................................................. 27 0 20 0.05 1 1 0 0 0 0 0
......................................................................................................................................TTCTTCTAAAATAGCTGAAAAAGTAG........................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0
...................................................................................................................TAGCTAGAAGTAGCCAACTTTCTTCT.............................................................................................................. 26 0 20 0.05 1 1 0 0 0 0 0
.....................................................................................................................................................TGAAAAAGTAGCAAAAAAGAAAACAGTGC......................................................................... 29 0 20 0.05 1 0 0 1 0 0 0
....................................................................................................................................................CTGAAAAAGTAGCAAAAAAGAAAACAGT........................................................................... 28 0 20 0.05 1 0 1 0 0 0 0
.............................................................................................................................TAGCCAACTTTCTTCTAAAATA........................................................................................................ 22 0 20 0.05 1 1 0 0 0 0 0
.........................................................................................AGAGTAGCAAAACCGAAGGCT............................................................................................................................................. 21 1 20 0.05 1 0 1 0 0 0 0
........................................................................................................................................................AAAAGTAGCAAAAAAGAAAACAGTG.......................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
..................................................................................TTCAGCAAAAGAAGCAAAACCGAAGGC.............................................................................................................................................. 27 1 20 0.05 1 1 0 0 0 0 0
.............................................................................................................TGAAAGTAGCTAGAAGTAGCC......................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0
.....................................................................................AGCAAAAGTAGCAAAACCGAAGG............................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0 0
...........................................................................................................................................................AGTAGCAAAAAAGAAAACAGTGCT........................................................................ 24 0 20 0.05 1 1 0 0 0 0 0
.....................................................................................................................................................TGAAAAAGCAGCAAAAAAGAAAACAGT........................................................................... 27 1 20 0.05 1 0 1 0 0 0 0
..............................................................................................................................................................ATCAAAAAAGAAAACAGTGCTGTTT.................................................................... 25 1 20 0.05 1 0 1 0 0 0 0
..........................................................................................................................................................AAGTAGCAAAAAAGAAAACAGTGCT........................................................................ 25 0 20 0.05 1 1 0 0 0 0 0
.............................................................................................................TGAAAGCAGCTGGAGGTAGC.......................................................................................................................... 20 3 20 0.05 1 0 0 0 1 0 0
......................................................................................................................................................GAAAAAGTAGCAAAAAAGAAAACAGTGC......................................................................... 28 0 20 0.05 1 0 1 0 0 0 0
.............................................................................................................TGAACGCAGCTGGAAGTAGCC......................................................................................................................... 21 3 20 0.05 1 0 0 0 1 0 0
........................................................................................AAAAGTAGCAAAACCGAAG................................................................................................................................................ 19 0 20 0.05 1 1 0 0 0 0 0
..............................................................................................................................................................AGCAAAAAAGAAAACAGTGCTGTTTT................................................................... 26 0 20 0.05 1 1 0 0 0 0 0
........................................................................................AAAAGTAGCAAAACCGAAGGCTGATT......................................................................................................................................... 26 2 20 0.05 1 0 1 0 0 0 0
............................................................................................GTAGCAAAACCGAAGGCTGAAAGTA...................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
........................................................................................................................................................................................................................................ATGACCACCAGCTCGTCAT 19 0 20 0.05 1 1 0 0 0 0 0
.............................................................................................TAGCAAAACCGAAGGCTGAAAGTAGC.................................................................................................................................... 26 0 20 0.05 1 0 1 0 0 0 0
........................................................................................AAAAGGAGCAAAACCGAAGGCTGAAA......................................................................................................................................... 26 1 20 0.05 1 0 1 0 0 0 0
........................................................................................AAAAGTAGCAAAACCGAAGGCTGC........................................................................................................................................... 24 1 20 0.05 1 1 0 0 0 0 0
.......................................................................................................................TAGAAGTAGCCAACTTTCTTCTAAAA.......................................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0
......................................................................................................................................................GAAAAAGTAGCAAAAAAGAAAACAGTG.......................................................................... 27 0 20 0.05 1 1 0 0 0 0 0
..............................................................................................ATAAAAACCGAAGGCTGAAAGTAGC.................................................................................................................................... 25 2 20 0.05 1 0 1 0 0 0 0
.................................................................................................................................................................................................................................TCTATCTATGACCACCAGCT...... 20 3 20 0.05 1 0 1 0 0 0 0
........................................................................................................................................................AAAAGTAGCAAAAAAGAAAACAGTGCTGT...................................................................... 29 0 20 0.05 1 1 0 0 0 0 0
.............................................................................................................TGAAAGTAGCGGGAGGTAGC.......................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 1
........................................................................................AGAAGTAGCAAAACCGAAGGCTGAAAG........................................................................................................................................ 27 1 20 0.05 1 0 1 0 0 0 0

Anti-sense strand reads

CTTCTACCGCGCCTTGCTCTCCGCAAGGAAGGCAGGACGCCTTAACCTGCCACGCGGGCCGACCGTCACAACGGCTTTGAAAAAGTCGTTTTCATCGTTTTGGCTTCCGACTTTCATCGATCTTCATCGGTTGAAAGAAGATTTTATCGACTTTTTCATCGTTTTTTCTTTTGTCACGACAAAAAAGTATATTTCAGTTGAAATAATTAAATTAAGATTATTATAGATTAGATACTGGTGGTCGAGCAGTA
*************************************************************************....((.............((......((((((((((.((....))..))))).....)))))........))...............))**************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V041
embryo
 V056
head
.......................................................GGGTCGACCGTCATAAGGG................................................................................................................................................................................. 19 3 14 2.43 34 29 4 0 1
......................................................AGGGCCGACCGTCATAAGGG................................................................................................................................................................................. 20 3 4 0.25 1 0 1 0 0
..........................................................................................................CCGACTTTCATCGATCTTCATCGGTT....................................................................................................................... 26 0 20 0.15 3 2 1 0 0
.......................................................GGGTCGACCGTCACAAGG.................................................................................................................................................................................. 18 2 11 0.09 1 1 0 0 0
...............................................................CGTCACAACGGCTTTGAAAAA....................................................................................................................................................................... 21 0 12 0.08 1 0 0 1 0
.............................................................................................ATCGTTTTGGCTTCCGACTTTCATCG.................................................................................................................................... 26 0 20 0.05 1 1 0 0 0
.....................................................................................................................CGATCTTCATCGGTTGAAAGAAGAT............................................................................................................. 25 0 20 0.05 1 0 0 1 0
.........................................................................................................................CTTCATCGGTTGAAAGAAGATTT........................................................................................................... 23 0 20 0.05 1 1 0 0 0
.......................................................................CGGCTTTGAAAAAGTCGTTTTCA............................................................................................................................................................. 23 0 20 0.05 1 1 0 0 0
...............................................................................................................................CGGTTGAAAGAAGATTTTA......................................................................................................... 19 0 20 0.05 1 1 0 0 0
...............................................................................................................................CGGTTGAAAGAAGATTTTATCGACT................................................................................................... 25 0 20 0.05 1 0 1 0 0
.....................................................................AACGGCTTTGAAAAAGTCGTTTTCATCGT......................................................................................................................................................... 29 0 20 0.05 1 1 0 0 0
........................................................................................................................................GAAGATTTTATCGACTTTTTCATCGT......................................................................................... 26 0 20 0.05 1 1 0 0 0
.....................................................................................................CGCTTCCGACTTTCATCGATCTTCATCG.......................................................................................................................... 28 1 20 0.05 1 1 0 0 0
....................................................................................................CGGCTTCCGACTTTCATCGATCTTCATCG.......................................................................................................................... 29 1 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6540:611378-611628 + dmo_1744 GAAGATGGCGCGGAACGAGAGGCGTTCCTTCCGTCCTGCGGAATTGGACGGTGCGCCCGGCTGGCAGTGTTGCCGAAACTTTTTCAGCAAAAGTAGCAAAACCGAAGGCTGAAAGTAGCTAGAAGTAGCCAACTT-TCTTCTAAAATAGCTGAA-AAAGTAGCAAA---------------------AAAGAAAACAGTGCTGTTTTTTCAT-----------ATAAAGTCAACTTTA-------T--TAATTTAATTCTAAT----AATATCTAATCTATGACCACCAGCTCGTCAT
droWil2 scf2_1100000004909:2476385-2476571 + G-----------------------------------------------------T------TGTCAGTGTTGCCAAAACTTTTTAAGCAAAAGTATCTAAAGCGAGGTCTAAAAGTAGGTAACTTTA---AAAT-TTCTTCAAAAATAGTTTAAAAAAGTAGCTAA---------------------AATGAAAACAGT---TTTTTTTAAT-----------AAAAATTCAACTTGT-------T--TAATTCAATGTTAAT----CTTATTTCATCGATAAACACCAACTCATCGT
droAna3 scaffold_12905:467871-468064 + G--------------------------------------------------------------GCAGTGTTGCCAGGTCTTGAACAAAAAATAATGCCAGATTTACGAAAAAAACTAGCTGAAAATAGCAAATTTGTTTGTAAAAAT-------------GGCTAACATTTTGTTACCCCAGAAAAT---------AACCAAATTAACCCAAAATAACCAAAA-----------AATT-------G--AATTTTAATTTAAATGTCCAATAATGATTTTATTAAATCTACATCTTCAC
droBip1 scf7180000396535:1520717-1520920 - ----------------------------------------------------------------CAGTGTTGCCAGTTCTTGAACAAAAAATAATGCCAGATTTACGAAAAAAACTAGCTGAAAATAGCAAATTTGTTTGTAAAAATGGCTGAA-AAAATGGCTAACATTTTGTTACCCCAAAAAAT---------AACCAAATTACCCCAAAATAACCAAAA-----------AATT-------G--AATTTTAATTTAAATGTCCAATAATGATTTTATTAAATCTACATCTTCAC
droEle1 scf7180000491209:10987-11184 - C-----------------------------------------------------GTCTGCACAGCAGTGCTGCCAGATTTTGAGAGATAAAATAAGCTAGATTGAAGAAAAAAATAAGCTAGAATAAGCTAAAAATTAAAAAAATTA-------------AGCTAAAAATAAGCTAACCATGGAAAACATTAA---------AATAG----------------TTGATTTTTT--AC-TTTTATTG--ATATTATATTTATATAGCTATTAGAG----TAAAGAAATAATTTCATCGA
droRho1 scf7180000777879:99154-99312 + G--------------------------------------------------------------ACAGTGCTGCCAGAAACTCCGAAGCAGAAATTGCTAGATTTTGAAAAAAAAGTTGCTAGAAATTGCTAAAAATTCTTCGAAAATAGCCAAC-AAAAATGCTAG------------------------------------ATCAG----------------TTAAATTTAAC----TTTTAAACTAATTATGCAT-----------ATAAATGATCGGTTGTCGCCA---------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
GAAGATGGCGCGGAACGAGAGGCGTTCCTTCCGTCCTGCGGAATTGGACGGTGCGCCCGGCTGGCAGTGTTGCCGAAACTTTTTCAGCAAAAGTAGCAAAACCGAAGGCTGAAAGTAGCTAGAAGTAGCCAACTT-TCTTCTAAAATAGCTGAA-AAAGTAGCAAA---------------------AAAGAAAACAGTGCTGTTTTTTCAT-----------ATAAAGTCAACTTTA-------T--TAATTTAATTCTAAT----AATATCTAATCTATGACCACCAGCTCGTCATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........................................................................................AAAAGTAGCAAAACCGAAGGCTGAAAG.......................................................................................................................................................................................27202.05413700004
.........................................................................................................................................................A-AAAGTAGCAAA---------------------AAAGAAAACAGTGC.................................................................................................26201.40287100182
......................................................................................................................................................TGAA-AAAGTAGCAAA---------------------AAAGAAAACAG....................................................................................................26201.15232100020
......................................................................................................................................................TGAA-AAAGTAGCAAA---------------------AAAGAAAACAGT...................................................................................................27201.05212100000
........................................................................................AAAAGTAGCAAAACCGAAGGCTG...........................................................................................................................................................................................23200.60121200000
......................................................................................................................................................TGAA-AAAGTAGCAAA---------------------AAAGAAAACAGTG..................................................................................................28200.306400020
......................................................................................................................................................TGAA-AAAGTAGCAAA---------------------AAAGAAAACA.....................................................................................................25200.306600000
........................................................................................AAAAGTAGCAAAACCGAAGGCTGAAA........................................................................................................................................................................................26200.255300002
..................................................................................TTCAGCAAAAGTAGCAAAACCGAAGGC.............................................................................................................................................................................................27200.204200020
..................................................................................TTCAGCAAAAGTAGCAAAACCGAAGG..............................................................................................................................................................................................26200.153100011
.........................................................................................AAAGTAGCAAAACCGAAGGCTGAAAG.......................................................................................................................................................................................26200.153300000
.......................................................................................CAAAAGTAGCAAAACCGAAGGCTGAAAG.......................................................................................................................................................................................28200.102200000
...................................................................................................................TAGCTAGAAGTAGCCAACTT-TCTTC.............................................................................................................................................................25200.102100010
...........................................................................................................................................................AAAGTAGCAAA---------------------AAAGAAAACAGTGC.................................................................................................25200.102000020
.............................................................................................................................................TAAAATAGCTGAA-AAAGTAGCA......................................................................................................................................22200.102200000
.........................................................................................................................................................A-AAAGTAGCAAA---------------------AAAGAAAACAGT...................................................................................................24200.102200000
.........................................................................................................................................................A-AAAGTAGCAAA---------------------AAAGAAAACAGTGCTG...............................................................................................28200.102200000
........................................................................................AAAAGTAGCAAAACCGAAGGCTGAAAGT......................................................................................................................................................................................28200.102000002
........................................................................................AAAAGTAGCAAAACCGAAGGCTGA..........................................................................................................................................................................................24200.102000011
...............................................................................................................................GCCAACTT-TCTTCTAAAATAGCTGAA-A..............................................................................................................................................27200.102200000
.......................................................................................................................................................GAA-AAAGTAGCAAA---------------------AAAGAAAACA.....................................................................................................24200.102200000
...............................................................GCAGTGTTGCCGAAACTTTTTCAGC..................................................................................................................................................................................................................25120.081100000
................................................................................TTTTCAGCAAAAGTAGCAAAACCGAAGG..............................................................................................................................................................................................28200.051100000
.............................................................................................................................................TAAAATAGCTGAA-AAAGTAGT.......................................................................................................................................21200.051000010
...........................................................................................................................................................AAAGTAGCAAA---------------------AAAGAAAACA.....................................................................................................21200.051100000
...............................................................................................................................................................TAGCAAA---------------------AAAGAAAACAGTGCTGT..............................................................................................24200.051100000
..................................................................................................................................AACTT-TCTTCTAAAATAGC....................................................................................................................................................19200.051100000
.....................................................................TTGCCGAAACTTTTTCAGCAAAAGTAGC.........................................................................................................................................................................................................28200.051100000
....................................................................GTTGCCGAAACTTTTTCAGCAAAAGT............................................................................................................................................................................................................26200.051100000
...............................................................................................................................................................TAGCAAA---------------------AAAGAAAACAGTGC.................................................................................................21200.051000010
........................................................................................AAAAGTAGCAAAACCGAAGGCT............................................................................................................................................................................................22200.051000010
........................................................................................................................................................AA-AAAGTAGCAAA---------------------AAAGAAAACAGT...................................................................................................25200.051100000
........................................................................................................................................................AA-AAAGTAGCAAA---------------------AAAGAAAACAGTGC.................................................................................................27200.051000001
.............................................................................................................................TAGCCAACTT-TCTTCTAAAATAGCT...................................................................................................................................................25200.051100000
...............................................................................TTTTTCAGCAAAAGTAGCAAAACCGAAGG..............................................................................................................................................................................................29200.051100000
..............................................................................................AGCAAAACCGAAGGCTGAA.........................................................................................................................................................................................19200.051100000
...........................................................................................................................................................AAAGTAGCAAA---------------------AAAGAAAACAGC...................................................................................................23200.051000010
.........................................................................................AAAGTAGCAAAACCGAAGGCTG...........................................................................................................................................................................................22200.051100000
...................................................................................TCAGCAAAAGTAGCAAAACCGAAGGCT............................................................................................................................................................................................27200.051100000
......................................................................................................................................T-TCTTCTAAAATAGCTGAA-AAAGTAG........................................................................................................................................26200.051100000
...................................................................................................................TAGCTAGAAGTAGCCAACTT-TCTTCT............................................................................................................................................................26200.051100000
......................................................................................................................................................TGAA-AAAGTAGCAAA---------------------AAAGAAAACAGTGC.................................................................................................29200.051000001
.....................................................................................................................................................CTGAA-AAAGTAGCAAA---------------------AAAGAAAACAGT...................................................................................................28200.051000010
.............................................................................................................................TAGCCAACTT-TCTTCTAAAATA......................................................................................................................................................22200.051100000
.........................................................................................................................................................A-AAAGTAGCAAA---------------------AAAGAAAACAGTG..................................................................................................25200.051100000
.............................................................................................................TGAAAGTAGCTAGAAGTAGCC........................................................................................................................................................................21200.051100000
.....................................................................................AGCAAAAGTAGCAAAACCGAAGG..............................................................................................................................................................................................23200.051100000
.............................................................................................................................................................AGTAGCAAA---------------------AAAGAAAACAGTGCT................................................................................................24200.051100000
............................................................................................................................................................AAGTAGCAAA---------------------AAAGAAAACAGTGCT................................................................................................25200.051100000
.......................................................................................................................................................GAA-AAAGTAGCAAA---------------------AAAGAAAACAGTGC.................................................................................................28200.051000010
........................................................................................AAAAGTAGCAAAACCGAAG...............................................................................................................................................................................................19200.051100000
................................................................................................................................................................AGCAAA---------------------AAAGAAAACAGTGCTGTTTT...........................................................................................26200.051100000
........................................................................................AAAAGTAGCAAAACCGAAGGCTGATT........................................................................................................................................................................................26200.051000010
............................................................................................GTAGCAAAACCGAAGGCTGAAAGTA.....................................................................................................................................................................................25200.051100000
.......................................................................................................................................................................................................................................................................................ATGACCACCAGCTCGTCAT19200.051100000
.............................................................................................TAGCAAAACCGAAGGCTGAAAGTAGC...................................................................................................................................................................................26200.051000010
........................................................................................AAAAGTAGCAAAACCGAAGGCTGC..........................................................................................................................................................................................24200.051100000
.......................................................................................................................TAGAAGTAGCCAACTT-TCTTCTAAAA........................................................................................................................................................26200.051100000
.......................................................................................................................................................GAA-AAAGTAGCAAA---------------------AAAGAAAACAGTG..................................................................................................27200.051100000
.........................................................................................................................................................A-AAAGTAGCAAA---------------------AAAGAAAACAGTGCTGT..............................................................................................29200.051100000
droWil2
G-----------------------------------------------------T------TGTCAGTGTTGCCAAAACTTTTTAAGCAAAAGTATCTAAAGCGAGGTCTAAAAGTAGGTAACTTTA---AAAT-TTCTTCAAAAATAGTTTAAAAAAGTAGCTAA---------------------AATGAAAACAGT---TTTTTTTAAT-----------AAAAATTCAACTTGT-------T--TAATTCAATGTTAAT----CTTATTTCATCGATAAACACCAACTCATCGTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................................................................................TAAGCAAAAGTATCTAAAGCGAGGTCT............................................................................................................................................................................................2711.00101000
...................................................................................................................................................................TAA---------------------AATGAAAACAGT---TTTTTTTCCC-----------...........................................................................2590.11101000
droAna3
G--------------------------------------------------------------GCAGTGTTGCCAGGTCTTGAACAAAAAATAATGCCAGATTTACGAAAAAAACTAGCTGAAAATAGCAAATTTGTTTGTAAAAAT-------------GGCTAACATTTTGTTACCCCAGAAAAT---------AACCAAATTAACCCAAAATAACCAAAA-----------AATT-------G--AATTTTAATTTAAATGTCCAATAATGATTTTATTAAATCTACATCTTCACSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................................................................................................................................................................T---------AACCAAATTAACCCAAAATAACCAA.............................................................................26139.00394350000
..........................................................................................................................................................................................T---------AACCAAATTAACCCAAAATAACCAAA............................................................................27123.00230230000
.............................................................................TCTTGAACAAAAAATAATGCCAGATT...................................................................................................................................................................................................2638.33252230000
..........................................................................................................................................................................................T---------AACCAAATTAACCCAAAATAACC...............................................................................2416.006060000
..........................................................................................................................................................................................T---------AACCAAATTAACCCAAAATAACCAAAA-----------................................................................2816.006051000
..........................................................................................................................................................................................T---------AACCAAATTAACCCAAAATAACCA..............................................................................2513.003021000
.......................................................................................................TACGAAAAAAACTAGCTGAAAATAGC.........................................................................................................................................................................2652.80140140000
...............................................................................TTGAACAAAAAATAATGCCAGATTTAC................................................................................................................................................................................................2732.337160000
..............................................................................................................................................................................TACCCCAGAAAAT---------AACCAAATTAACCC........................................................................................2712.002020000
..............................................................................................................................................................................TACCCCAGAAAAT---------AACCAAATTAACC.........................................................................................2612.002020000
...........................................................................................................................AATAGCAAATTTGTTTGTAAAAAT-------------GGC.......................................................................................................................................2761.509090000
.......................................................................................................................................GTTTGTAAAAAT-------------GGCTAACATTTTGT............................................................................................................................2611.001010000
..............................................................................................................................................................................TACCCCAGAAAAT---------AACCAAATTAAC..........................................................................................2511.001010000
...........................................................................................................................................GTAAAAAT-------------GGCTAACATTTTGTTACCCC......................................................................................................................2811.001010000
...................................................................................................................................................................TAACATTTTGTTACCCCAGAAAAT---------AACC..................................................................................................2811.001010000
....................................................................................................................................................................................................AACCAAATTAACCCAAAATAACCAAA............................................................................2611.001010000
....................................................................................................................................................................AACATTTTGTTACCCCAGAAAAT---------AACC..................................................................................................2711.001010000
............................................................................................................................................TAAAAAT-------------GGCTAACATTTTGTTACCC.......................................................................................................................2611.001010000
...........................................................................................................................................................................TGTTACCCCAGAAAAT---------AACCAAATTAACC.........................................................................................2911.001010000
........................................................................................................................................................................................AAT---------AACCAAATTAACCCAAAATAACC...............................................................................2611.001010000
...............................................................................TTGAACAAAAAATAATGCCAGATT...................................................................................................................................................................................................2431.003030000
......................................................................TGCCAGGTCTTGAACAAAAAATAATGCC........................................................................................................................................................................................................2840.753030000
.............................................................................................................................................................................................................................................................TAATTTAAATGTCCAATAATGATTTTAT.................2870.715050000
......................................................................................................TTACGAAAAAAACTAGCTGAAAATAGC.........................................................................................................................................................................2750.603030000
.....................................................................................................TTTACGAAAAAAACTAGCTGAAAATAGC.........................................................................................................................................................................2850.603030000
.................................................................................................................................................................................................................................................................TTAAATGTCCAATAATGATTTTAT.................2470.574040000
................................................................................................................................................................................................................................................................TTTAAATGTCCAATAATGATTTTAT.................2570.574040000
.......................................................................GCCAGGTCTTGAACAAAAAATAATGCC........................................................................................................................................................................................................2740.502020000
...............................................................................TTGAACAAAAAATAATGCC........................................................................................................................................................................................................1940.502020000
............................................................................GTCTTGAACAAAAAATAATGCCAGC.....................................................................................................................................................................................................2540.502020000
................................................................................TGAACAAAAAATAATGCCAGATTTACGA..............................................................................................................................................................................................2820.501100000
.......................................................................................AAAATAATGCCAGATTTACGAAAAAAACT......................................................................................................................................................................................2920.501010000
.................................................................................................................................................................................................................CAAAATAACCAAAA-----------AATT-------G--AATTT.............................................2420.501010000
.............................................................................TCTTGAACAAAAAATAATGCCAGATTT..................................................................................................................................................................................................2730.331010000
.............................................................................TCTTGAACAAAAAATAATGCCAGATC...................................................................................................................................................................................................2630.331010000
............................................................................GTCTTGAACAAAAAATAATGCCAGATC...................................................................................................................................................................................................2730.331010000
............................................................................GTCTTGAACAAAAAATAATGCCAGATT...................................................................................................................................................................................................2730.331100000
................................................................................TGAACAAAAAATAATGCCAGATTTAC................................................................................................................................................................................................2630.331010000
............................................................................GTCTTGAACAAAAAATAATGCCAGA.....................................................................................................................................................................................................2530.331100000
..............................................................................CTTGAACAAAAAATAATGCCAGATTT..................................................................................................................................................................................................2630.331010000
......................................................................................................................................................................................................................................................................TGTCCAATAATGATTTTATTAAATCTAC........2870.292020000
................................................................................TGAACAAAAAATAATGCCAGATTTTT................................................................................................................................................................................................2640.251010000
.............................................................................TCTTGAACAAAAAATAATGCCAG......................................................................................................................................................................................................2340.251100000
........................................................................CCAGGTCTTGAACAAAAAATAATGCCA.......................................................................................................................................................................................................2740.251100000
...................................................................TGTTGCCAGGTCTTGAACAAAAAAA..............................................................................................................................................................................................................2540.251010000
................................................................CAGTGTTGCCAGGTCTTGAACAAAAAAT..............................................................................................................................................................................................................2840.251010000
................................................................CAGTGTTGCCAGGTCTTGAACAAAAAA...............................................................................................................................................................................................................2740.251100000
.........................................................................CAGGTCTTGAACAAAAAATAATGCC........................................................................................................................................................................................................2540.251010000
.....................................................................TTGCCAGGTCTTGAACAAAAAATAATGCC........................................................................................................................................................................................................2940.251010000
...........................................................................................TAATGCCAGATTTACGAAAAAAACTAGC...................................................................................................................................................................................2850.201010000
..........................................................................................................................................................................................................................................................TTTTAATTTAAATGTCCAATAATGAT......................2650.201010000
.......................................................................................................TACGAAAAAAACTAGCTGAAAATAGCA........................................................................................................................................................................2750.201010000
.............................................................................................ATGCCAGATTTACGAAAAAAACTAGC...................................................................................................................................................................................2650.201010000
...........................................................................................................................AATAGCAAATTTGTTTGTAAAAAT-------------GGCC......................................................................................................................................2860.171010000
...........................................................................................................................AATAGCAAATTTGTTTGTAAAAAT-------------GGCT......................................................................................................................................2860.171010000
................................................................................................................................................................................................................................................................................TGATTTTATTAAATCTACATCTTCAC2660.171010000
.............................................................................................................................................................................................................................................................TAATTTAAATGTCCAATAATGATTT....................2570.141010000
..................................................................................................................................................................................................................................................................TAAATGTCCAATAATGATTTTAT.................2370.141010000
.............................................................................................................................................................................................................................................................TAATTTAAATGTCCAATAATGATTTTATT................2970.141010000
......................................................................................................................................................................................................................................................................TGTCCAATAATGATTTTATTAAATC...........2570.141010000
....................................................................................................................................................................................................................................................................AATGTCCAATAATGATTTTAT.................2170.141010000
.................................................................................................................................................................................................................................................................TTAAATGTCCAATAATGATTTTAC.................2470.141010000
............................................................................................................AAAAAACTAGCTGAAACC............................................................................................................................................................................18200.051010000
droBip1
----------------------------------------------------------------CAGTGTTGCCAGTTCTTGAACAAAAAATAATGCCAGATTTACGAAAAAAACTAGCTGAAAATAGCAAATTTGTTTGTAAAAATGGCTGAA-AAAATGGCTAACATTTTGTTACCCCAAAAAAT---------AACCAAATTACCCCAAAATAACCAAAA-----------AATT-------G--AATTTTAATTTAAATGTCCAATAATGATTTTATTAAATCTACATCTTCACSizeHit CountTotal NormTotal
No Reads
droEle1
C-----------------------------------------------------GTCTGCACAGCAGTGCTGCCAGATTTTGAGAGATAAAATAAGCTAGATTGAAGAAAAAAATAAGCTAGAATAAGCTAAAAATTAAAAAAATTA-------------AGCTAAAAATAAGCTAACCATGGAAAACATTAA---------AATAG----------------TTGATTTTTT--AC-TTTTATTG--ATATTATATTTATATAGCTATTAGAG----TAAAGAAATAATTTCATCGASizeHit CountTotal NormTotal
No Reads
droRho1
G--------------------------------------------------------------ACAGTGCTGCCAGAAACTCCGAAGCAGAAATTGCTAGATTTTGAAAAAAAAGTTGCTAGAAATTGCTAAAAATTCTTCGAAAATAGCCAAC-AAAAATGCTAG------------------------------------ATCAG----------------TTAAATTTAAC----TTTTAAACTAATTATGCAT-----------ATAAATGATCGGTTGTCGCCA---------SizeHit CountTotal NormTotal
No Reads

Generated: 05/18/2015 at 01:15 AM