dmo_1737

intron [Dmoj\GI18285-in]; exon [dmoj_GLEANR_3126:9]; CDS [Dmoj\GI18285-cds]; intron [Dmoj\GI18285-in]

Name	Class	Family	Strand
Homo6	DNA	hAT-Pegasus	+
DNAREP1_DM	RC	Helitron	+

--------------####################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ATTAAATCAATAAGGTATTGATGGATACCAAAATGCTGTCAACACAAATGGTAATTATAATTTGTATACCTTGAACCCATTGAAAACGGGAAATCAGGATATAATGGTTTGGTTGAAATGTATGTAACAGTCAGAAGGAGGCGTGGAAGAGCTCATAAAGTATATATATTCTTGATCAGTCAATTTATCCCTGTCCGTCTGGCTGTCCGTCCGTATATATAGCGCGGATATCGAGTTTATCTCTAAAAATC ************************************************...................................(((((....(((((((.(((...((((((((((((((((((...........((.((........))))......)))))))))).))))))))...)))))).)))))))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	M060 embryo
................ATTGATGGATACCAAAATGC.......................................................................................................................................................................................................................	20	0	1	1.00	1	1	0
..................................................................................................................................TCAGAAGGTTGCGTGAAA.......................................................................................................	18	3	20	0.20	4	4	0
.....................................................................................................................ATGTATGTAACAGTCAGAAGGAGG..............................................................................................................	24	0	7	0.14	1	0	1
........................................................................................................................TATGTAACAGTCAGAAGGAGG..............................................................................................................	21	0	12	0.08	1	0	1
.................................................................................................................................................................................................................TCCGTATATATAGCGCGGATATCGAG................	26	0	19	0.05	1	1	0

TAATTTAGTTATTCCATAACTACCTATGGTTTTACGACAGTTGTGTTTACCATTAATATTAAACATATGGAACTTGGGTAACTTTTGCCCTTTAGTCCTATATTACCAAACCAACTTTACATACATTGTCAGTCTTCCTCCGCACCTTCTCGAGTATTTCATATATATAAGAACTAGTCAGTTAAATAGGGACAGGCAGACCGACAGGCAGGCATATATATCGCGCCTATAGCTCAAATAGAGATTTTTAG ************************************************...................................(((((....(((((((.(((...((((((((((((((((((...........((.((........))))......)))))))))).))))))))...)))))).)))))))))...************************************************	Read size	Hit Count	Total Norm	Total	M046 female body
.........................................................................TTGGGTAACTTTTGCCCTTTAGT...........................................................................................................................................................	23	14	0.21	3	3
........................................................................CTTGGGTAACTTTTGCCCTTTAGT...........................................................................................................................................................	24	14	0.07	1	1
.........................................................................TTGGGTAACTTTTGCCCTTTA.............................................................................................................................................................	21	14	0.07	1	1
.......................................................................................................................................................GAGTATTTCATATATATAAGAA..............................................................................	22	20	0.05	1	1

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6500:31586664-31586914 +	dmo_1737	ATTAA---ATCAATAAGGTAT-----TG--------------ATGGATACCAAAATGCTGTC-------------------------------------------------------------AACACAAATGG-T------AA------------------------TTATAATTTGTATACCTT-GA------ACCCATTGAAAACGGGAAATCAGGATATAATGGTTTGGTTG-------AAATGTATGTAACAGTCAGAAGGAGGCGTGGAAGAGCTCATAAAGTATAT----------ATATTCTTGATCAG--------------TCAATTTATCCCTGTCCGTCTGG--------CTGTCCGTCC--------GTATATAT-AGCGCGGATATC-------------------------GAGTTTATCTCTAAAAATC
droVir3	scaffold_12936:519895-520132 -		AAGTC------AATAATGTCAA----TG--------------GTGGCCATAAA-ATATG------------------------------AAAAAT---AT--------------------------------------------------------A-----------TCTTCCTTTTTATACCCT-AA------ACCCATTAAAAATGGGT-ATAAGGGTATATTGTATTTGTGCGAAATCCAAATGTATGTAACAGGCAGAAGGAAACATCTCCGACCCCATAAAGTATAT----------ATATTCTTGATCAGCATCAATAGCCGAGTCGATCTAGCCATGTCCGTCCAT--------GTCCATGTCC--------GTT----TATTTTCGATAATC--------------------------------------------
droGri2	scaffold_15110:19741418-19741641 -		TTTAA---TAAAAAAAAGT--------------------TTGTTAAATAATAAAATATT-------------------------------AT---TTAATATTTATTAA------------------------------------------A------------------TATATTTTTATACCCTGAAACCT--ATTT---AAAAATGGGTAAAAATGGTAAAATACTTTTGTGC-------AAATGTATGTAATAGGCAG----AAACATCTCCGACCCCATAAAGTATAT----------ATATTCTTGATCAGAA--------------------GCCATGTTCGTGTGT--------CCGTCCGTTT--------GTCTGTATGAGCACGCGGATCTC------------------------------------------
droWil2	scf2_1100000004909:589663-589901 -		TAA-------------TGTAC------------------TTGTTGACTAAGAAAATGCAAAC-------------------------------------------------------------AA-----------AACACAAAC------C--ATT-----------TTTTCCTTTTTATACCAT-TC------ACCCAT------AGA-T-GAAATGGTATATTAAAGTCGCCA-------AAATGTATGTAACAGGCAGAAGAAAGCTTCTCCGACCCCATAAAGTATAT----------ATATTCTTGATCAGGATT---AACCGAGTCGATCTAGCCATGCCCGTCTGT--------CTGTCCGTCC--------GTCTGTATGAACACGCAGATCTCGGAG----------------------TCTAT-----------
dp5	Unknown_singleton_1638:2441-2661 +		ATATG---AT---------ATTGACGAT--------------CTGGATGTATTAACACC-------------------------------------------------------------------------------------------------------------AGGTCATTTTTATACCCG-AT------ACTCAA----AATGAGT-ATTAGGGTATATTAGATTTGTGGTGAAAATGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATAT----------ATATTCTTTATCAGCATCAATAGCCGAGTCCATTAAGCCCTGTCTGTCTGT--------CCGTCTGTCC--------GTCCCTATCAGCGC---------------------------------------------------
droPer2	scaffold_16:1818588-1818825 -		CTTAA---AACGATAAGGTGTT----TA--------------AAAACAA---AAAAACGTGT-------------------------------------------------------------AATACAAT--------------TTTTGTGCTAAT-----------TTTTGTTAATTATACCCG-AT------ACTCAA----AATGAGT-ATTGGGGTATATTAGATTTGTGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCTATAAAGTATAT----------ATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCCTGTCTGTCTGT--------CCGTCCGTCC--------GTCT----GT-------------------------------------------------------
droAna3	scaffold_13112:33150-33363 -		ATTAA---TATTAAAA----------AA--------------GTAGATATACCATTTTTAACGA----------AATTT----------AAT---TGCATATTTTTT----------------------------------------------------------------GCATATTTATACCCT-T-----------GC-------------AGAGGGTATTTTAATTTTGGTC-------AAAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATAT----------ATATTCTTGAACAGGATCACCTCCTGAGTCGATATAAGCATGTCCGTCTGT--------CCGTCTGACC--------GTCT----GT-------------------------------------------------------
droBip1	scf7180000395303:932-1183 -		TTACA----TCAAT------T-----TC--------------AAACTTAACAAAATATCTTCAA----------T---A----------AAT---TCAATAATTTTTGT------------------------------------------T------------------TATCTTTTTATACCCT-T-----------GC-------------AGAGGGTATTATAATTTTGGTC-------AAAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATAT----------ATATTCTTGATCAGGATCACCTCCTGAGTTGATATGAGCATGTACGTCTGTCCGTATGTCTGTCCGTCT--------GTCT----GT----TT----CTACTAGTCTAGTCTC----------TAGTCTATCTCTA------
droKik1	scf7180000299114:6726-6950 +		TTTAT---TTTAATGA----------AT--------------ATTGGAATACCACT-CAGATGC----------TGTG---------------------------------------------TG--------CT-GATATTAA-TTTCCTT------------------TATATAATTATACCCT---------------------------TGCAGGGTATTATAATTTCAGTC-------AGAAGTTTGCAACGCAGTGAAGGAGACCTTTCCGACCCTTTAAAGAATAT----------ATATTCTTGATCAGCATCAACAGCAGAGTCGATCTAGCCATGTCCGTCTGT--------CTGTCTGTCC--------GTCT----GTCTGTTT-CTAC--------------------------------------------
droFic1	scf7180000453838:789786-790004 +		AAGGT---ATTGTT------T-----TT--------------CAAAAT--------ATTTTT--TGACACACGGA--TG----------GAAAAT---------------------------------------------------TT--------C-----------TTGCTTTTTTTATACCCT-T-----------GC------AGAGC-A-AAGGGTATTATAATTTCAGTC-------AGAAGTTTGCAACGCAGTGAAGGAGACACCTCAGACCCTATAAAGTATAT----------ATATTCTTGATCAGCATCACGATCTGAATCGAAATCCGTCTGTACGTCTGT--------CTGTCGGTCC--------GTC----TGTCCGGCG-------------------------------------------------
droEle1	scf7180000490847:1454-1692 -		AGTAT---AAGTATAA----------GT--------------ATGGATATAAAAATGTGAGGAG----------GACTA----------A------------------------------------------------------------------C-----------TTGTACTTTGTATACTCT-GC--CGCTCCACAA----GTAGAGT-AAAAGGGTATATTATATTCGTTG-------AAAAGTATGTGACAGGTAGAAAGAAGCGTATCCGACAATATAAAGTATAT----------ATATTTTTAATCAGGATCAATAGCCGAATCGATCTAGACATGTCCGTCTGT--------CTGTCCGTCT--------GTA----TGAACGTCGAGATCTCGGAAA-------------------------------------
droRho1	scf7180000766365:10610-10867 +		AATAA---AAT---ATAGTTT---------------------AT-GATACCTA-----------------------------------------------------------TA---CCTCTTAATACAATTCG-A------A--TTTCACG------------------TTTATTTTTATACCCG-TT------ACTCGT------AGAGT-AAAAGGGTATATTGTATTCGTGC-------AAAAGTATGTAACAGGTAGAAGGAAGCGTTTCCGACCCTATAAAGTATAT----------ATATTCTTGTTCAGAATCACTAGCCGAGTCGATCTAGCCATGTCCGTCTGT--------CTGTCC------------GTA----TGAACGTTGAGATCTCGGAAA--------CTATAAAAGT----TTGTTTCAAAA---T
droBia1	scf7180000302250:70008-70226 +		ATTAA---TAA-----TGTTG-----TC--------------GTAATTAACAAAATTCA-------------------------------AGAAA---AT--------------------------------------------------------------------GTTTAATTTTTATACCCG-TT------ACTCGT------AGAGT-AAAAGAGTATACTAGATTCGTCA-------GAAAGTAAGTTACAGGTAAAAGGAGGCTTTTCCGACCC--TAAGGTATAT----------ATATTCTTGATAAGGATCACTAGCCGAGTCGATCTAGCCATGTCCGTCTGT--------CAGTCTGTCC--------GTA----TAAACGCTGAGATC--------------------------------------------
droTak1	scf7180000415212:78381-78617 +		CTTACGCAAGCAATAAGAAATATAGGAA----------CTTTAAAATTAAAGAAAAACAAAT-------------------------------------------------------------AA------------GTAGCAACTAT---A-TAGG-----------TATGGTTAATTATACCCG-TT------ACACGT------ACAGT-AAAAGTGTATATTGTATTCGTGC-------AAAAGTATGTAACAGCTTGAAGGAAGCGTTTCCGACCCCATAAAGTATAT----------ATATTCTTGATCAG-----------------------CCATGTCCGTCTGT--------CCGTCTGTCTGACTGTCCGTA----TGAACGCTGAGATC--------------------------------------------
droEug1	scf7180000408804:23955-24181 +		ATAGA---ATCCAGTAGGAA------TT--------------GTGATTAC------ATTAGT-----------------TCCAATATGG----------------------------------------------A------AGC------G------------------ATTGTTTTTATACCCG-TT------ACTCGT------AGAGT-AAAAGGGTATACTAGATTCGTTG-------AAAAGAATGTAACAGATAGAAG-AAGCGTTTCTGAACATATAAAGTATAT----------ATATTCTTGATCAGGATTAATAGCGAAGTCGATTGAGCCATGACCGTCTGT--------CCGTCCGTCC--------GTG----TGAACGCTGAGATC--------------------------------------------
dm3	chr4:75868-76111 -		AATAA---CG--AT------------TA--------------ACGGGTATAAAAATGTTTA----------------------------------------TTATTA--TTATAATTACTATTATTATAAT--------------TTTTATGATTAATCAATAAATAATAAACATTTTTATACCCG-TT------AC----------------------------TAGATTCGTTG-------AAATGAATGTAACAGGCAGAAGGAAGCGTCTTAGACCATATATAGTATATACATACATGTATATTCTTGATCAGGATCAATAGCCGAGTCGATCTTGCCATATCCGTCTGT--------CC----------------GTA----TGAACGTCGAGATC--------------------------------------------
droSim2	x:20086374-20086591 -		ATTAA---ATACATAT-----------C--------------AAATTTATTA---TATTGTA-----------------AATAAAAATG----------------------------------------------A------AGC------T------------------AATTTTATTATACCCG-TT------ACTCGT------AGAGT-AAAAGGGTATACTAGATTCGTTG-------AAAAGTATGTTACATGGAGAAGGAAGCGTTTCTGACCATAAAAAGTATAT----------ATATTCTTGATCAGGATCAATATCCTAGTCGATCTAGCCATGTCCGTCTGT--------CC----------------GTA----TGAACGCCGAGATC--------------------------------------------
droSec2	scaffold_1:272502-272719 -		TTAAT---ATTGCA------T-----AG--------------GCACATACTACAGCACTAACAG----------TATTA----------AATAAT---AT--------------------------------------------------------------------ATTTCATTTTTATATCCG-TT------ACTCGT------TGAGT-AAAAGGGTATACTAGATTCGTTG-------AAAAGTATGTAACAGGCAAAAGGAACTGATTCCGACCATATAAAGTATAT----------ATATTCTTGATCAGGAT------------CGATCTGGCCATTTCCATCTGT--------CC----------------GTA----TGAACGTCGAGATCTCTGAAA-------------------------------------
droYak3	4:1191493-1191711 +		ATAAA---ATTTATAAG---------TT------------G-GTATACACTAGATTTCTGAC-------------------------------------------------------------AA-----------CATACAAA-TTTGGTT------------------CAT-----AGCTCTTG-TT------ACTCGT------AGAGT-AAAAGGGTATACTAGATTCGTTG-------AAAAGTATGTAACAGCTAGAAGGAAGCGTTTCCGACC--ATAAAGTATAT----------ATATTCTTGATCAGGATCAATAGCCGAGTCGATCTGGCCATGTACGTCTGT--------CC----------------ATA----TGAACGTCGAGATC--------------------------------------------
droEre2	scaffold_4929:19969010-19969254 +		TATCG---ATGAAC------G-----GTCAAAAATGGTTTTGTT---------AATACATAAAG----------AACCA----------AAA---TCCTTACATTCTGT------------------------------------------A------------------CAACTTAGTATACCCG-TT------ACTCGT------AGAAT-AAAAGGGTATCCTAGATTCGTTG-------AAAAGTATGTAACAGGCAGAAGGAAGCCTTTCCCACCATAAAAGGTATAT----------ATATTCTTGATCAGGATCAATAGCCGAGTCGAACTGGCCATGTCCGTCC-----------------------------TG----TGAACGTCGAGATCTCGGAA---------CTCTAAAA---------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

ATTAA---ATCAATAAGGTAT-----TG--------------ATGGATACCAAAATGCTGTC-------------------------------------------------------------AACACAAATGG-T------AA------------------------TTATAATTTGTATACCTT-GA------ACCCATTGAAAACGGGAAATCAGGATATAATGGTTTGGTTG-------AAATGTATGTAACAGTCAGAAGGAGGCGTGGAAGAGCTCATAAAGTATAT----------ATATTCTTGATCAG--------------TCAATTTATCCCTGTCCGTCTGG--------CTGTCCGTCC--------GTATATAT-AGCGCGGATATC-------------------------GAGTTTATCTCTAAAAATC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...................AT-----TG--------------ATGGATACCAAAATGC...................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................ATGTATGTAACAGTCAGAAGGAGG................................................................................................................................................................................	24	7	0.14	1	0	0	0	0	1	0
........................................................................................................................................................................................................................................................TATGTAACAGTCAGAAGGAGG................................................................................................................................................................................	21	12	0.08	1	0	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................TCC--------GTATATAT-AGCGCGGATATC-------------------------GAG................	26	19	0.05	1	1	0	0	0	0	0

droVir3

AAGTC------AATAATGTCAA----TG--------------GTGGCCATAAA-ATATG------------------------------AAAAAT---AT--------------------------------------------------------A-----------TCTTCCTTTTTATACCCT-AA------ACCCATTAAAAATGGGT-ATAAGGGTATATTGTATTTGTGCGAAATCCAAATGTATGTAACAGGCAGAAGGAAACATCTCCGACCCCATAAAGTATAT----------ATATTCTTGATCAGCATCAATAGCCGAGTCGATCTAGCCATGTCCGTCCAT--------GTCCATGTCC--------GTT----TATTTTCGATAATC--------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
........................................................................................................................................................................................................TTAAAAATGGGT-ATAAGGGTATAT............................................................................................................................................................................................................................	24	20	2.20	44	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...TC------AATAATGTCAA----TG--------------GTGGCCATAAA-.......................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TTAAAAATGGGT-ATAAGGGTATATT...........................................................................................................................................................................................................................	25	20	1.20	24	0	0	21	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................GTCGATCTAGCCATGTCCGTCCAT--------GT.................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................TCCAAATGTATGTAACAGGCAGAAG....................................................................................................................................................................................	25	20	0.40	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................AGTCGATCTAGCCATGTCCGTCCA............................................................................................	24	6	0.33	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................T----------ATATTCTTGATCAGCATCAATAGC......................................................................................................................	25	20	0.15	3	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................TCCAAATGTATGTAACAGGCAGAAGGAA.................................................................................................................................................................................	28	20	0.10	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................CCCATTAAAAATGGGT-ATAAGGG.................................................................................................................................................................................................................................	23	20	0.10	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCGAG..................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................ATTCTTGATCAGCATCAATAGCCG....................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................ATATTGTATTTGTGCGAAATCC..........................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................TATAT----------ATATTCTTGATCAGCATC............................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................T-AA------ACCCATTAAAAATGGGT-ATAAGGG.................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................AAATGTATGTAACAGGCAGAA.....................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................ATTTGTGCGAAATCCAAATGTATGT................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATCTAGCCATGT...................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................ATCAGCATCAATAGCCGAG..................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................TAAAGTATAT----------ATATTCTTGATCAGCA..............................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................T-ATAAGGGTATATTGTATTTGTGC.................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................GGTATATTGTATTTGTGCGAAA.............................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................CAAATGTATGTAACAGGCAGAAGGAAAC...............................................................................................................................................................................	28	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................TGCGAAATCCAAATGTATGTAACAGGC.........................................................................................................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TTAAAAATGGGT-ATAAGGG.................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................AGGGTATATTGTATTTGTGCG................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................AGAAGGAAACATCTCCGACCCCAT.................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................AT----------ATATTCTTGATCAGCATCAATAGCC.....................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................GTATAT----------ATATTCTTGATCAGC...............................................................................................................................	21	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

TTTAA---TAAAAAAAAGT--------------------TTGTTAAATAATAAAATATT-------------------------------AT---TTAATATTTATTAA------------------------------------------A------------------TATATTTTTATACCCTGAAACCT--ATTT---AAAAATGGGTAAAAATGGTAAAATACTTTTGTGC-------AAATGTATGTAATAGGCAG----AAACATCTCCGACCCCATAAAGTATAT----------ATATTCTTGATCAGAA--------------------GCCATGTTCGTGTGT--------CCGTCCGTTT--------GTCTGTATGAGCACGCGGATCTC------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

TAA-------------TGTAC------------------TTGTTGACTAAGAAAATGCAAAC-------------------------------------------------------------AA-----------AACACAAAC------C--ATT-----------TTTTCCTTTTTATACCAT-TC------ACCCAT------AGA-T-GAAATGGTATATTAAAGTCGCCA-------AAATGTATGTAACAGGCAGAAGAAAGCTTCTCCGACCCCATAAAGTATAT----------ATATTCTTGATCAGGATT---AACCGAGTCGATCTAGCCATGCCCGTCTGT--------CTGTCCGTCC--------GTCTGTATGAACACGCAGATCTCGGAG----------------------TCTAT-----------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...........................................TGACTAAGAAAATGCAAAC-------------------------------------------------------------AA-----------AACACA...............................................................................................................................................................................................................................................................................................................	27	4	2.75	11	0	10	0	1	0
...............................................TAAGAAAATGCAAAC-------------------------------------------------------------AA-----------AACACAAAC------......................................................................................................................................................................................................................................................................................................	26	4	1.25	5	0	3	0	2	0
..........................................TTGACTAAGAAAATGCAAAC-------------------------------------------------------------AA-----------AACACA...............................................................................................................................................................................................................................................................................................................	28	4	1.00	4	0	4	0	0	0
..........................................TTGACTAAGAAAATGCAAAC-------------------------------------------------------------AA-----------AACAC................................................................................................................................................................................................................................................................................................................	27	4	0.50	2	0	2	0	0	0
..........................................TTGACTAAGAAAATGCAAAC-------------------------------------------------------------AA-----------AACACAA..............................................................................................................................................................................................................................................................................................................	29	4	0.50	2	0	2	0	0	0
.................................................AGAAAATGCAAAC-------------------------------------------------------------AA-----------AACACAAAC------C--ATT-----------T....................................................................................................................................................................................................................................................................................	29	4	0.25	1	0	1	0	0	0
...........................................TGACTAAGAAAATGCAAAC-------------------------------------------------------------AA-----------AACACAAA.............................................................................................................................................................................................................................................................................................................	29	4	0.25	1	0	1	0	0	0
...........................................TGACTAAGAAAATGCAAAC-------------------------------------------------------------AA-----------AACACAT..............................................................................................................................................................................................................................................................................................................	28	4	0.25	1	0	1	0	0	0
...............................................TAAGAAAATGCAAAC-------------------------------------------------------------AA-----------AACACAAAC------C--A..................................................................................................................................................................................................................................................................................................	28	4	0.25	1	0	1	0	0	0
...............................................TAAGAAAATGCAAAC-------------------------------------------------------------AA-----------AACACAAAC------C--AT.................................................................................................................................................................................................................................................................................................	29	4	0.25	1	0	1	0	0	0
........................................................GCAAAC-------------------------------------------------------------AA-----------AACACAAAC------C--ATT-----------T....................................................................................................................................................................................................................................................................................	22	4	0.25	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................ATAT----------ATATTCTTGATCAGGAT.............................................................................................................................	21	20	0.20	4	4	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................CGATCTAGCCATGCCCGTCTGT--------...................................................................................	22	14	0.07	1	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................TAT----------ATATTCTTGATCAGGATT---.........................................................................................................................	21	20	0.05	1	0	0	1	0	0
....................................................................................................................................................................................................................................................AATGTATGTAACAGGCAGAAGAAAGC...............................................................................................................................................................................	26	20	0.05	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................ATAT----------ATATTCTTGATCAGGATT---.........................................................................................................................	22	20	0.05	1	0	1	0	0	0
......................................................................................................................................................................................................................................TCGCCA-------AAATGTATGTAACAGGCAGAA.....................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0

dp5

ATATG---AT---------ATTGACGAT--------------CTGGATGTATTAACACC-------------------------------------------------------------------------------------------------------------AGGTCATTTTTATACCCG-AT------ACTCAA----AATGAGT-ATTAGGGTATATTAGATTTGTGGTGAAAATGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATAT----------ATATTCTTTATCAGCATCAATAGCCGAGTCCATTAAGCCCTGTCTGTCTGT--------CCGTCTGTCC--------GTCCCTATCAGCGC---------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.....................................................................................................................................................................................................................................TTTGTGGTGAAAATGGATGT....................................................................................................................................................................................................	20	20	4.30	86	0	85	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................TTGTGGTGAAAATGGATGTGTG.................................................................................................................................................................................................	22	20	4.00	80	0	80	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................TTTGTGGTGAAAATGGATGTG...................................................................................................................................................................................................	21	20	3.70	74	0	0	4	0	0	0	0	0	70	0
......................................................................................................................................................................................................................................TTGTGGTGAAAATGGATGTGTGT................................................................................................................................................................................................	23	20	2.05	41	0	39	0	0	0	0	0	2	0	0
......................................................................................................................................................................................................................................................TGTGTGTAACGTCCAGAAGGA..................................................................................................................................................................................	21	20	1.25	25	0	25	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................CCAGAAGGAATCGTTTCCGACC.....................................................................................................................................................................	22	20	1.15	23	0	23	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................TTTGTGGTGAAAATGGATGTGTGT................................................................................................................................................................................................	24	20	1.05	21	0	0	0	0	21	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................TTTATCAGCATCAATAGCCGAGTCCA..............................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................TGGATGTATTAACACC-------------------------------------------------------------------------------------------------------------AGGTCATTTTT..........................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................TCGTTTCCGACCCCATAAAGTATAT----------..............................................................................................................................................	25	20	0.85	17	0	17	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................CCAGAAGGAATCGTTTCCGAC......................................................................................................................................................................	21	20	0.70	14	0	14	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................TGTGGTGAAAATGGATGTGTGTAA..............................................................................................................................................................................................	24	20	0.65	13	0	12	0	0	1	0	0	0	0	0
.....................................................................................................................................................................................................................................TTTGTGGTGAAAATGGATGTGT..................................................................................................................................................................................................	22	20	0.60	12	0	0	12	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................TGTGGTGAAAATGGATGTGTG.................................................................................................................................................................................................	21	20	0.50	10	0	0	0	0	1	0	0	9	0	0
......................................................................................................................................................................................................................................................................AAGGAATCGTTTCCGACCCC...................................................................................................................................................................	20	20	0.35	7	0	7	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................TGTCTGT--------CCGTCTGTCC--------GTC..............................................................	20	20	0.30	6	0	6	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................TAT----------ATATTCTTTATCAGCATC............................................................................................................................	21	15	0.27	4	0	2	0	1	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................................GAAGGAATCGTTTCCGACCCCATAAAGT............................................................................................................................................................	28	20	0.25	5	0	0	5	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................TAAGCCCTGTCTGTCTGT--------CCGTCTGTC..........................................................................	27	4	0.25	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................TTATCAGCATCAATAGCCGAGT.................................................................................................................	22	10	0.20	2	0	0	2	0	0	0	0	0	0	0
............................................GGATGTATTAACACC-------------------------------------------------------------------------------------------------------------AGGTCATTT............................................................................................................................................................................................................................................................................	24	13	0.15	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................TGGTGAAAATGGATGTGTGTA...............................................................................................................................................................................................	21	20	0.15	3	0	0	0	0	0	0	0	3	0	0
...............................................................................................................................................................................................................................................................CGTCCAGAAGGAATCGTTTCC.........................................................................................................................................................................	21	20	0.15	3	0	3	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................TCCGACCCCATAAAGTATAT----------ATA...........................................................................................................................................	23	20	0.15	3	0	0	0	0	0	0	0	3	0	0
........................................................................................................................................................................................................................................GTGGTGAAAATGGATGTGTGTAAC.............................................................................................................................................................................................	24	20	0.15	3	0	3	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................TAGGGTATATTAGATTTGTGG.................................................................................................................................................................................................................	21	7	0.14	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................AA----AATGAGT-ATTAGGGTATAT............................................................................................................................................................................................................................	21	7	0.14	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................AT----------ATATTCTTTATCAGCATCA...........................................................................................................................	21	14	0.14	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................TTTATCAGCATCAATAGCCGAGTC................................................................................................................	24	9	0.11	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................TAAGCCCTGTCTGTCTGT--------CCGT...............................................................................	22	10	0.10	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................TGTCTGTCTGT--------CCGTCTGTCC--------GTCC.............................................................	25	20	0.10	2	0	0	0	0	0	0	0	1	1	0
.................................................................................................................................................................................................................................TAGATTTGTGGTGAAAATGGATGTGT..................................................................................................................................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	2	0	0
.....................................................................................................................................................................................................................................TTTGTGGTGAAAATGGATGTGTG.................................................................................................................................................................................................	23	20	0.10	2	0	0	0	0	0	2	0	0	0	0
.............................................................................................................................................................................................................................................GAAAATGGATGTGTGTAACG............................................................................................................................................................................................	20	20	0.10	2	0	1	0	0	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................TTTCCGACCCCATAAAGTAT..........................................................................................................................................................	20	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................TTAAGCCCTGTCTGTCTGT--------CCG................................................................................	22	10	0.10	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................T----------ATATTCTTTATCAGCATCAATAGCCGA...................................................................................................................	28	11	0.09	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................AGGGTATATTAGATTTGTGGT................................................................................................................................................................................................................	21	13	0.08	1	0	1	0	0	0	0	0	0	0	0
............................................GGATGTATTAACACC-------------------------------------------------------------------------------------------------------------AGGTCA...............................................................................................................................................................................................................................................................................	21	13	0.08	1	0	1	0	0	0	0	0	0	0	0
...................ATTGACGAT--------------CTGGATGTATTAACA....................................................................................................................................................................................................................................................................................................................................................................................................	24	17	0.06	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................TGT--------CCGTCTGTCC--------GTCCCTATCAGCGC---------------------------------------------------	27	18	0.06	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................TCATTTTTATACCCG-AT------ACTCAA----A...............................................................................................................................................................................................................................................	24	18	0.06	1	0	1	0	0	0	0	0	0	0	0
..ATG---AT---------ATTGACGAT--------------CTGGATG............................................................................................................................................................................................................................................................................................................................................................................................................	21	18	0.06	1	0	0	0	0	0	0	0	0	1	0
...........................................................................................................................................................................................AT------ACTCAA----AATGAGT-ATTAGGT.................................................................................................................................................................................................................................	22	19	0.05	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................TCCAGAAGGAATCGTTTCCGA.......................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................ATTAGATTTGTGGTGAAAATG.........................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................CCTGTCTGTCTGT--------CCGTCTG............................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................AGATTTGTGGTGAAAATGGATG.....................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................ATATTAGATTTGTGGTGAAAA...........................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	1	0
............................................................................................................................................................................................................................TATATTAGATTTGTGGTGAAA............................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0
...........................................................................................................................................................................................................................................................GTAACGTCCAGAAGGAATC...............................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................ATTTGTGGTGAAAATGGATGTGTG.................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	1	0
............................................................................................................................................................................................................................................TGAAAATGGATGTGTGTAACGTC..........................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................TCCAGAAGGAATCGTTTCCGACC.....................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	1	0	0	0
.......................................................................................................................................................................................................................................TGTGGTGAAAATGGATGTGTGTAAC.............................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................TGTCTGTCTGT--------CCGTCTGTCC--------GTC..............................................................	24	20	0.05	1	0	0	0	0	1	0	0	0	0	0
......................................................................................................................................................................................................................................TTGTGGTGAAAATGGATGTGT..................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................GTAACGTCCAGAAGGAATCG..............................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	1	0
..............................................................................................................................................................................................................................................AAAATGGATGTGTGTAACGTC..........................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................TTAGATTTGTGGTGAAAATGGATGT....................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	1	0
.................................................................................................................................................................................................................................TAGATTTGTGGTGAAAATGGAT......................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................GTCTGTCC--------GTCCCTATCAGCGC---------------------------------------------------	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................AGCATCAATAGCCGAGTC................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................CGTCTGTCC--------GTCCCTATCAGC.....................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................TCTGTCTGT--------CCGTCTGTCC--------GTC..............................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................GTCTGT--------CCGTCTGTCC--------GTCCCT...........................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................ATCAGCATCAATAGCCGAGTCC...............................................................................................................	22	20	0.05	1	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................CTGTCTGTCTGT--------CCGTCTG............................................................................	19	20	0.05	1	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................TGTGGTGAAAATGGATGTG...................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	1	0	0
...........................................................................................................................................................................................................................................................................................................................................................TGTCTGT--------CCGTCTGTCC--------GTCCC............................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................TATTAGATTTGTGGTGAAAATGG........................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	1	0
.......................................................................................................................................................................................................................................TGTGGTGAAAATGGATGTGT..................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................TTTGTGGTGAAAATGGATGTGTGTA...............................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................AGATTTGTGGTGAAAATGGA.......................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................TCTGTCTGT--------CCGTCTGTCC--------GTCC.............................................................	23	20	0.05	1	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................TTGTGGTGAAAATGGATGTGTGTAA..............................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................TGTCTGTCTGT--------CCGTCTGTCC--------GTCCC............................................................	26	20	0.05	1	0	0	0	0	0	0	1	0	0	0
...............................................................................................................................................................................................................................................................................TTTCCGACCCCATAAAGTATAT----------AT............................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................CCGACCCCATAAAGTATAT----------A.............................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................TGGTGAAAATGGATGTGTGTAA..............................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................GTGAAAATGGATGTGTGTAAC.............................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0

droPer2

CTTAA---AACGATAAGGTGTT----TA--------------AAAACAA---AAAAACGTGT-------------------------------------------------------------AATACAAT--------------TTTTGTGCTAAT-----------TTTTGTTAATTATACCCG-AT------ACTCAA----AATGAGT-ATTGGGGTATATTAGATTTGTGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCTATAAAGTATAT----------ATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCCTGTCTGTCTGT--------CCGTCCGTCC--------GTCT----GT-------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.....................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATTGAGCCCTG....................................................................................................	20	20	0.35	7	0	0	0	0	0	7
......................................................................................................................................................................................................................................................TGTGTGTAACGTCCAGAAGGA..................................................................................................................................................................................	21	20	0.25	5	0	5	0	0	0	0
.....................................................................................................................................................................................................................ATTGGGGTATATTAGATTTGTGGT................................................................................................................................................................................................................	24	20	0.10	2	0	0	2	0	0	0
.............................................................................................................................................................................................................................................................AACGTCCAGAAGGAATCGTTTC..........................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................CTGTCTGT--------CCGTCCGTCC--------.................................................................	18	20	0.05	1	1	0	0	0	0	0

droAna3

ATTAA---TATTAAAA----------AA--------------GTAGATATACCATTTTTAACGA----------AATTT----------AAT---TGCATATTTTTT----------------------------------------------------------------GCATATTTATACCCT-T-----------GC-------------AGAGGGTATTTTAATTTTGGTC-------AAAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATAT----------ATATTCTTGAACAGGATCACCTCCTGAGTCGATATAAGCATGTCCGTCTGT--------CCGTCTGACC--------GTCT----GT-------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...................................................................................................................................................................................................................................................................................................................................................AGCATGTCCGTCTGT--------CCGTCT.............................................................................	21	20	0.50	10	10	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................AGGATCACCTCCTGAGTCGA..............................................................................................................	20	20	0.35	7	7	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................TCGATATAAGCATGTCCGTCTGT--------C..................................................................................	24	20	0.20	4	4	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................ATTCTTGAACAGGATCACCTCCT.....................................................................................................................	23	7	0.14	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................ATATTCTTGAACAGGATCACCTCC......................................................................................................................	24	8	0.13	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................TGGTC-------AAAAGTGTGCAACGCA..........................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	2	0
...........................................................................................................................................................................................T-----------GC-------------AGAGGGTATTTTAATTTTGGTC-------..........................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0

droBip1

TTACA----TCAAT------T-----TC--------------AAACTTAACAAAATATCTTCAA----------T---A----------AAT---TCAATAATTTTTGT------------------------------------------T------------------TATCTTTTTATACCCT-T-----------GC-------------AGAGGGTATTATAATTTTGGTC-------AAAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATAT----------ATATTCTTGATCAGGATCACCTCCTGAGTTGATATGAGCATGTACGTCTGTCCGTATGTCTGTCCGTCT--------GTCT----GT----TT----CTACTAGTCTAGTCTC----------TAGTCTATCTCTA------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TTTAT---TTTAATGA----------AT--------------ATTGGAATACCACT-CAGATGC----------TGTG---------------------------------------------TG--------CT-GATATTAA-TTTCCTT------------------TATATAATTATACCCT---------------------------TGCAGGGTATTATAATTTCAGTC-------AGAAGTTTGCAACGCAGTGAAGGAGACCTTTCCGACCCTTTAAAGAATAT----------ATATTCTTGATCAGCATCAACAGCAGAGTCGATCTAGCCATGTCCGTCTGT--------CTGTCTGTCC--------GTCT----GTCTGTTT-CTAC--------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AAGGT---ATTGTT------T-----TT--------------CAAAAT--------ATTTTT--TGACACACGGA--TG----------GAAAAT---------------------------------------------------TT--------C-----------TTGCTTTTTTTATACCCT-T-----------GC------AGAGC-A-AAGGGTATTATAATTTCAGTC-------AGAAGTTTGCAACGCAGTGAAGGAGACACCTCAGACCCTATAAAGTATAT----------ATATTCTTGATCAGCATCACGATCTGAATCGAAATCCGTCTGTACGTCTGT--------CTGTCGGTCC--------GTC----TGTCCGGCG-------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AGTAT---AAGTATAA----------GT--------------ATGGATATAAAAATGTGAGGAG----------GACTA----------A------------------------------------------------------------------C-----------TTGTACTTTGTATACTCT-GC--CGCTCCACAA----GTAGAGT-AAAAGGGTATATTATATTCGTTG-------AAAAGTATGTGACAGGTAGAAAGAAGCGTATCCGACAATATAAAGTATAT----------ATATTTTTAATCAGGATCAATAGCCGAATCGATCTAGACATGTCCGTCTGT--------CTGTCCGTCT--------GTA----TGAACGTCGAGATCTCGGAAA-------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AATAA---AAT---ATAGTTT---------------------AT-GATACCTA-----------------------------------------------------------TA---CCTCTTAATACAATTCG-A------A--TTTCACG------------------TTTATTTTTATACCCG-TT------ACTCGT------AGAGT-AAAAGGGTATATTGTATTCGTGC-------AAAAGTATGTAACAGGTAGAAGGAAGCGTTTCCGACCCTATAAAGTATAT----------ATATTCTTGTTCAGAATCACTAGCCGAGTCGATCTAGCCATGTCCGTCTGT--------CTGTCC------------GTA----TGAACGTTGAGATCTCGGAAA--------CTATAAAAGT----TTGTTTCAAAA---T	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ATTAA---TAA-----TGTTG-----TC--------------GTAATTAACAAAATTCA-------------------------------AGAAA---AT--------------------------------------------------------------------GTTTAATTTTTATACCCG-TT------ACTCGT------AGAGT-AAAAGAGTATACTAGATTCGTCA-------GAAAGTAAGTTACAGGTAAAAGGAGGCTTTTCCGACCC--TAAGGTATAT----------ATATTCTTGATAAGGATCACTAGCCGAGTCGATCTAGCCATGTCCGTCTGT--------CAGTCTGTCC--------GTA----TAAACGCTGAGATC--------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CTTACGCAAGCAATAAGAAATATAGGAA----------CTTTAAAATTAAAGAAAAACAAAT-------------------------------------------------------------AA------------GTAGCAACTAT---A-TAGG-----------TATGGTTAATTATACCCG-TT------ACACGT------ACAGT-AAAAGTGTATATTGTATTCGTGC-------AAAAGTATGTAACAGCTTGAAGGAAGCGTTTCCGACCCCATAAAGTATAT----------ATATTCTTGATCAG-----------------------CCATGTCCGTCTGT--------CCGTCTGTCTGACTGTCCGTA----TGAACGCTGAGATC--------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

ATAGA---ATCCAGTAGGAA------TT--------------GTGATTAC------ATTAGT-----------------TCCAATATGG----------------------------------------------A------AGC------G------------------ATTGTTTTTATACCCG-TT------ACTCGT------AGAGT-AAAAGGGTATACTAGATTCGTTG-------AAAAGAATGTAACAGATAGAAG-AAGCGTTTCTGAACATATAAAGTATAT----------ATATTCTTGATCAGGATTAATAGCGAAGTCGATTGAGCCATGACCGTCTGT--------CCGTCCGTCC--------GTG----TGAACGCTGAGATC--------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

AATAA---CG--AT------------TA--------------ACGGGTATAAAAATGTTTA----------------------------------------TTATTA--TTATAATTACTATTATTATAAT--------------TTTTATGATTAATCAATAAATAATAAACATTTTTATACCCG-TT------AC----------------------------TAGATTCGTTG-------AAATGAATGTAACAGGCAGAAGGAAGCGTCTTAGACCATATATAGTATATACATACATGTATATTCTTGATCAGGATCAATAGCCGAGTCGATCTTGCCATATCCGTCTGT--------CC----------------GTA----TGAACGTCGAGATC--------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.........................................................................................................................................................................................................................................................................................................................................................TCCGTCTGT--------CC----------------GTA----TGAACGTCGAGA..............................................	26	20	9.10	182	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	6	3	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	1	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	48	0	3	23	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	0	0	0	0	0	0	31	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATAGCCGAGT.................................................................................................................	23	20	2.55	51	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................A--------------ACGGGTATAAAAATGTTTA----------------------------------------TT......................................................................................................................................................................................................................................................................................................................................................	22	2	2.50	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................AGGATCAATAGCCGAGTCGATCTT..........................................................................................................	24	3	2.33	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................TAAACATTTTTATACCCG-TT------AC----------------------------TA..........................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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........................................................................................................................................................................................................................................................................................................................ATCAGGATCAATAGCCGAGTC................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................ATTCTTGATCAGGATCAATAGCCGAG..................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................CAGGATCAATAGCCGAGTCGAT.............................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................TGATCAGGATCAATAGCCGAGTCGA..............................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................TATATTCTTGATCAGGATCAATAGCCGAG..................................................................................................................	29	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................CGTCTGT--------CC----------------GTA----TGAACGTCGAGATC--------------------------------------------	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................TCTGT--------CC----------------GTA----TGAACGTC..................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................CTGT--------CC----------------GTA----TGAACGTCGAG...............................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

ATTAA---ATACATAT-----------C--------------AAATTTATTA---TATTGTA-----------------AATAAAAATG----------------------------------------------A------AGC------T------------------AATTTTATTATACCCG-TT------ACTCGT------AGAGT-AAAAGGGTATACTAGATTCGTTG-------AAAAGTATGTTACATGGAGAAGGAAGCGTTTCTGACCATAAAAAGTATAT----------ATATTCTTGATCAGGATCAATATCCTAGTCGATCTAGCCATGTCCGTCTGT--------CC----------------GTA----TGAACGCCGAGATC--------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.......................................................................................................................................................................................................................................................................................................................................................TGTCCGTCTGT--------CC----------------GTA----TGAACGCCGA................................................	26	5	63.80	319	0	0	7	0	0	0	118	91	67	35	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................GCCATGTCCGTCTGT--------CC----------------GTA----TGAACGCC..................................................	28	2	14.00	28	0	0	0	0	0	0	16	9	2	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................GCCATGTCCGTCTGT--------CC----------------GTA----TGAACGC...................................................	27	2	12.50	25	0	0	0	0	0	0	9	8	5	3	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................CATGTCCGTCTGT--------CC----------------GTA----TGAACGCCGA................................................	28	4	11.00	44	0	0	0	0	0	0	23	11	9	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................GCCATGTCCGTCTGT--------CC----------------GTA----TGAACGCCGA................................................	30	2	8.00	16	0	0	0	0	0	0	9	7	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................T------ACTCGT------AGAGT-AAAAGGGTA...............................................................................................................................................................................................................................	21	20	7.35	147	0	0	0	0	147	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................T-AAAAGGGTATACTAGATTCGTTG-------AAA.......................................................................................................................................................................................................	27	20	3.70	74	0	0	0	0	0	0	74	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................TGTCCGTCTGT--------CC----------------GTA----TGAACGCCG.................................................	25	5	3.20	16	0	0	0	0	0	0	5	7	4	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................AAAAGTATGTTACATGGAGAAGGAA.................................................................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................TAGCCATGTCCGTCTGT--------CC----------------GTA----TGAACGC...................................................	29	2	3.00	6	0	0	0	0	0	0	2	0	2	1	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................AAAAGTATGTTACATGGAGAAGGA..................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................AAAGTATGTTACATGGAGAAGGAAGC...............................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................TGTCCGTCTGT--------CC----------------GTA----TGAACGCC..................................................	24	5	1.60	8	0	0	0	0	0	0	2	2	1	2	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................TAGCCATGTCCGTCTGT--------CC----------------GTA----TGAACGCC..................................................	30	2	1.50	3	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................T------AGAGT-AAAAGGGTATACTAGATTCGT...................................................................................................................................................................................................................	27	20	1.45	29	0	0	0	0	0	0	0	0	0	0	29	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................TCCGTCTGT--------CC----------------GTA----TGAACGCCGA................................................	24	6	1.33	8	0	0	1	0	0	0	0	1	2	1	3	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................GTCCGTCTGT--------CC----------------GTA----TGAACGCCGA................................................	25	5	1.00	5	0	0	0	0	0	0	3	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................AAAAGTATGTTACATGGAGAAGGAAG................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................TAGCCATGTCCGTCTGT--------CC----------------GTA----TGAACGCT..................................................	30	2	1.00	2	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................AGCGTTTCTGACCATAAAAAGTA...........................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................TTCGTTG-------AAAAGTATGTTACATGG.........................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................TAGTCGATCTAGCCATGTCCGTCTG............................................................................................	25	4	1.00	4	0	0	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................TTCGTTG-------AAAAGTATGTTACATGGAGA......................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................TATGTTACATGGAGAAGGAAGCGTT............................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................GCCATGTCCGTCTGT--------CC----------------GTA----TGAACGCCG.................................................	29	2	1.00	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................TTCGTTG-------AAAAGTATGTTACATGGAG.......................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................TTCTTGATCAGGATCAATATCCTAGT.................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................TAGCCATGTCCGTCTGT--------CC----------------GTA----TGA.......................................................	25	20	0.85	17	0	0	0	0	0	0	5	7	1	4	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................ATGTCCGTCTGT--------CC----------------GTA----TGAACGCCGA................................................	27	4	0.75	3	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................TAGTCGATCTAGCCATGTCCGTCTGT--------C..................................................................................	27	3	0.67	2	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................AGCCATGTCCGTCTGT--------CC----------------GTA----TGAACGC...................................................	28	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................CATGTCCGTCTGT--------CC----------------GTA----TGAACGCC..................................................	26	4	0.50	2	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................TAGCCATGTCCGTCTGT--------CC----------------GTA----TGAAC.....................................................	27	20	0.50	10	0	0	0	0	0	0	0	4	6	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................TGTCCGTCTGT--------CC----------------GTA----TGAACGC...................................................	23	8	0.50	4	0	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................TGTCCGTCTGT--------CC----------------GTA----TGAACGCCGG................................................	26	5	0.40	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................TCCGTCTGT--------CC----------------GTA----TGAACGCCG.................................................	23	6	0.33	2	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................CTAGTCGATCTAGCCATGTCCGTCTG............................................................................................	26	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................CTAGTCGATCTAGCCATGTCCGTC..............................................................................................	24	3	0.33	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................ATATTCTTGATCAGGATCAATATC......................................................................................................................	24	6	0.33	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................TAGCCATGTCCGTCTGT--------CC----------------GTA----TGAACG....................................................	28	20	0.30	6	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................GTCTGT--------CC----------------GTA----TGAACGCCGA................................................	21	7	0.29	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................CTAGTCGATCTAGCCAT.....................................................................................................	17	8	0.25	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................TAAAAAGTATAT----------ATATTCTTGATCAGGA..............................................................................................................................	28	4	0.25	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................TGTCCGTCTGT--------CC----------------GTA----TGAACGCCGAGA..............................................	28	4	0.25	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................ATCTAGCCATGTCCGTCT.............................................................................................	18	20	0.25	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................GT--------CC----------------GTA----TGAACGCCGA................................................	17	9	0.22	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................TCTAGCCATGTCCGTCTGT--------CC----------------GTA----TG........................................................	26	20	0.20	4	0	0	1	0	0	0	2	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................GTCCGTCTGT--------CC----------------GTA----TGAACGCC..................................................	23	5	0.20	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................TCTAGCCATGTCCGTCTGT--------CC----------------GTA----TGA.......................................................	27	20	0.20	4	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................TCTAGCCATGTCCGTCTGT--------CC----------------GTA----TGAA......................................................	28	20	0.20	4	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................GCCATGTCCGTCTGT--------CC----------------GTA----TGAAC.....................................................	25	20	0.20	4	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................AAAAGGGTATACTAGATTCGTTG-------AAA.......................................................................................................................................................................................................	26	20	0.20	4	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................CTAGTCGATCTAGCCATGTCC.................................................................................................	21	5	0.20	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................TCCGTCTGT--------CC----------------GTA----TGAACGCCGAGA..............................................	26	5	0.20	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................TGTCCGTCTGT--------CC----------------GTA----TGAACGCCGT................................................	26	6	0.17	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................TCCGTCTGT--------CC----------------GTA----TGAACGCCGG................................................	24	6	0.17	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................CCGTCTGT--------CC----------------GTA----TGAACGCCGA................................................	23	6	0.17	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................TCCGTCTGT--------CC----------------GTA----TGAACGCC..................................................	22	6	0.17	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................TCTAGCCATGTCCGTCTGT--------CC----------------GTA----..........................................................	24	20	0.15	3	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................ATGTCCGTCTGT--------CC----------------GTA----TGAA......................................................	21	20	0.15	3	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................AAGTATAT----------ATATTCTTGATCAGGA..............................................................................................................................	24	20	0.15	3	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................TAGCCATGTCCGTCTGT--------CC----------------GTA----TG........................................................	24	20	0.15	3	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................AAGGGTATACTAGATTCGTTG-------AAAAGT....................................................................................................................................................................................................	27	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................CATGTCCGTCTGT--------CC----------------GTA----TGAACGCCGAA...............................................	29	7	0.14	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................TCTGT--------CC----------------GTA----TGAACGCCGA................................................	20	7	0.14	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................CTGT--------CC----------------GTA----TGAACGCCGA................................................	19	7	0.14	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................TGT--------CC----------------GTA----TGAACGCCGA................................................	18	9	0.11	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................TCCGTCTGT--------CC----------------GTA----TGAACGC...................................................	21	9	0.11	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................AGGGTATACTAGATTCGTTG-------AAAAGTA...................................................................................................................................................................................................	27	20	0.10	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................GTCGATCTAGCCATGTCCGTCTGT--------CC----------------.................................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................GTATAT----------ATATTCTTGATCAGGA..............................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................TGTCCGTCTGT--------CC----------------GTA----TGAACGCCGAA...............................................	27	20	0.10	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................TATTATACCCG-TT------ACTCGT------AGAGT-A.......................................................................................................................................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................AAAGTATAT----------ATATTCTTGATCAGG...............................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................GATCTAGCCATGTCCGTCTGT--------CC----------------GTA----..........................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................T--------CC----------------GTA----TGAACGCCGA................................................	16	11	0.09	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................CGTCTGT--------CC----------------GTA----TGAACGC...................................................	19	13	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................GTCTGT--------CC----------------GTA----TGAACGC...................................................	18	15	0.07	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................TCTGT--------CC----------------GTA----TGAACGC...................................................	17	16	0.06	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................TATTATACCCG-TT------ACTCGT------AGAGT-AAA.....................................................................................................................................................................................................................................	27	19	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................GGGTATACTAGATTCGTTG-------AAAAGTA...................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................................................TATACCCG-TT------ACTCGT------AGAGT-........................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................TACTAGATTCGTTG-------AAAAGTATGT................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................TTCTTGATCAGGATCAATATA......................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................CGATCTAGCCATGTCCGTCTGT--------CC----------------GT...............................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................GTCGATCTAGCCATGTCCGTCTGT--------...................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................TTATACCCG-TT------ACTCGT------AGAGT-AAA.....................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................TCGT------AGAGT-AAAAGGGTATACTA..........................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................TCTTGATCAGGATCAAT.........................................................................................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................TAGCCATGTCCGTCTGT--------CC----------------GTA----TGAA......................................................	26	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................AAAAGGGTATACTAGATTCGTTG-------AAAAGTA...................................................................................................................................................................................................	30	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................ATATTCTTGATCAGGATCAATA........................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................TGTCCGTCTGT--------CC----------------GTA----TGAACG....................................................	22	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................GTCCGTCTGT--------CC----------------GTA----TGAACGCCT.................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................CGATCTAGCCATGTCCGTCTGT--------CC----------------GTA----..........................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................ATAT----------ATATTCTTGATCAGGATCAA..........................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................CTAGCCATGTCCGTCTGT--------CC----------------GTA----TGAACG....................................................	29	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................GGGTATACTAGATTCGTTG-------AAAAGT....................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................TTATTATACCCG-TT------ACTCGT------AGAGT-A.......................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................TAT----------ATATTCTTGATCAGGAT.............................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................CGATCTAGCCATGTCCGTCTGT--------CC----------------G................................................................	25	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................CCATGTCCGTCTGT--------CC----------------GTA----TGAACG....................................................	25	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................AAAGTATAT----------ATATTCTTGATCAGGA..............................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0

droSec2

TTAAT---ATTGCA------T-----AG--------------GCACATACTACAGCACTAACAG----------TATTA----------AATAAT---AT--------------------------------------------------------------------ATTTCATTTTTATATCCG-TT------ACTCGT------TGAGT-AAAAGGGTATACTAGATTCGTTG-------AAAAGTATGTAACAGGCAAAAGGAACTGATTCCGACCATATAAAGTATAT----------ATATTCTTGATCAGGAT------------CGATCTGGCCATTTCCATCTGT--------CC----------------GTA----TGAACGTCGAGATCTCTGAAA-------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
................................................................................................................................................................................................................................................................................................................................................................GT--------CC----------------GTA----TGAACGTCGAGATCTCT.........................................	24	3	0.33	1	1	0	0	0
.....................................................................................................................................................................................................................................TTCGTTG-------AAAAGTATGTAACAGGC.........................................................................................................................................................................................	24	20	0.20	4	0	0	0	4
.TAAT---ATTGCA------T-----AG--------------GCACATACTACAG......................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.15	3	3	0	0	0
.....................................................................................................................................................................................................................................TTCGTTG-------AAAAGTATGTAACAGGCAA.......................................................................................................................................................................................	26	13	0.08	1	1	0	0	0
..................................................................................................................................................................................................................................................................................................TAT----------ATATTCTTGATCAGGAT------------C................................................................................................................	21	20	0.05	1	0	0	1	0
.............................................................................................................................................................................................................................ATACTAGATTCGTTG-------AAAAGT....................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................TGT--------CC----------------GTA----TGAACGTCGAGA..............................................	20	20	0.05	1	1	0	0	0
.....................................................................................................................................................................................................................................TTCGTTG-------AAAAGTATGTAAC.............................................................................................................................................................................................	20	20	0.05	1	1	0	0	0

droYak3

ATAAA---ATTTATAAG---------TT------------G-GTATACACTAGATTTCTGAC-------------------------------------------------------------AA-----------CATACAAA-TTTGGTT------------------CAT-----AGCTCTTG-TT------ACTCGT------AGAGT-AAAAGGGTATACTAGATTCGTTG-------AAAAGTATGTAACAGCTAGAAGGAAGCGTTTCCGACC--ATAAAGTATAT----------ATATTCTTGATCAGGATCAATAGCCGAGTCGATCTGGCCATGTACGTCTGT--------CC----------------ATA----TGAACGTCGAGATC--------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.....................................................................................................................................................................................................TCGT------AGAGT-AAAAGGGTATACTAGATT......................................................................................................................................................................................................................	27	20	15.45	309	0	309	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................AGGATCAATAGCCGAGTCGATCTGGC........................................................................................................	26	20	0.15	3	0	0	3	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................AGTCGATCTGGCCATGTACGTCTGT--------CC----------------.................................................................	27	7	0.14	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................TCAATAGCCGAGTCGATCTGG.........................................................................................................	21	20	0.10	2	0	0	0	0	2	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATAGC......................................................................................................................	18	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................ATACTAGATTCGTTG-------AAAAGT....................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATCTGGCCAT.....................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................AGATTCGTTG-------AAAAGTATGTA...............................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

TATCG---ATGAAC------G-----GTCAAAAATGGTTTTGTT---------AATACATAAAG----------AACCA----------AAA---TCCTTACATTCTGT------------------------------------------A------------------CAACTTAGTATACCCG-TT------ACTCGT------AGAAT-AAAAGGGTATCCTAGATTCGTTG-------AAAAGTATGTAACAGGCAGAAGGAAGCCTTTCCCACCATAAAAGGTATAT----------ATATTCTTGATCAGGATCAATAGCCGAGTCGAACTGGCCATGTCCGTCC-----------------------------TG----TGAACGTCGAGATCTCGGAA---------CTCTAAAA---------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.....................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATAGCCGAGTCGA..............................................................................................................	26	20	1.30	26	0	0	0	0	0	0	26
........................................................................................................................................................................................................................................................TATGTAACAGGCAGAAGGAAG................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	1

dmo_1737

scaffold_6500:31586714-31586864 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-22.8	-22.8	-22.7