ID:

dmo_1730

 Coordinate:

scaffold_6500:31116212-31116386 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-26.9 -26.9 -26.9 -26.9

Flybase annnotation

exon [dmoj_GLEANR_381:3]; CDS [Dmoj\GI18873-cds]; exon [dmoj_GLEANR_381:2]; CDS [Dmoj\GI18873-cds]; intron [Dmoj\GI18873-in]

Repeatable elements

NameClassFamilyStrand
OSVALDO_LTRLTRGypsy-
mature
  1. dmo_1730  scaffold_6500:31116359-31116384 -
  2. scaffold_6500:31121275-31121300 -
star
  1. dmo_1730  scaffold_6500:31116223-31116244 -
  2. scaffold_6500:31121139-31121160 -

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AAGCAGGGCCTGTGGCTGGGCTATAAGAGGCCGCTCGCAGCTCCATACGGGTTAGTCAAAGAAATAGAAAAATGAGAGTGATTGTCAAATGAGTAAATTGAGAACTGAAAGACCGCCCAATGAAAGTGCAAAGTACGCGAATGGAAAATAAGGACATCGAAGAACTCCCAGCACTTCGTGGGAACAGCAAGGACATCCAGAAGCAATCCTTGCAACAACTTTCAGAGGAGAAGGGGCAAGCAGGAACGTCAGCGGCACCAACGAGGACATTGATG
****************************************************....................((.....((((((.....((.....(((...............(((.(((.((((((..(((...((.(((...........)))))....)))....)))))))))))).....))).....)).....))))))....))************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V056
head
....................................................TAGTCAAAGAAATAGAAAAATGAGAG..................................................................................................................................................................................................... 26 0 2 0.50 1 1 0
................................................................................................................................................................................................ACATCCAGAAGCAATCCTTGCA............................................................. 22 0 2 0.50 1 1 0
.......................................................................................................................................................................................ACAGCAAGGACATCCAGAAG........................................................................ 20 0 2 0.50 1 1 0
................................................................................................................................................................................................ACATCCAGAAGCAATCCTTGCAACA.......................................................... 25 0 2 0.50 1 1 0
...........GTAGCTGGGCTATAAGAGC..................................................................................................................................................................................................................................................... 19 2 9 0.11 1 0 1
...........................................CATACGGGTTAGATAACGA..................................................................................................................................................................................................................... 19 3 10 0.10 1 0 1
..GCAGGGCCTGTGGCTGGGCTA............................................................................................................................................................................................................................................................ 21 0 14 0.07 1 0 1

Anti-sense strand reads

TTCGTCCCGGACACCGACCCGATATTCTCCGGCGAGCGTCGAGGTATGCCCAATCAGTTTCTTTATCTTTTTACTCTCACTAACAGTTTACTCATTTAACTCTTGACTTTCTGGCGGGTTACTTTCACGTTTCATGCGCTTACCTTTTATTCCTGTAGCTTCTTGAGGGTCGTGAAGCACCCTTGTCGTTCCTGTAGGTCTTCGTTAGGAACGTTGTTGAAAGTCTCCTCTTCCCCGTTCGTCCTTGCAGTCGCCGTGGTTGCTCCTGTAACTAC
*************************************************************....................((.....((((((.....((.....(((...............(((.(((.((((((..(((...((.(((...........)))))....)))....)))))))))))).....))).....)).....))))))....))**************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V041
embryo
 V110
male body		 V049
head
 V056
head
..........................................................................................................................................................................CGTGAAGCACCCTTGTCGTTCCT.................................................................................. 23 0 1 2.00 2 0 1 1 0 0 0
.......................................................................................................................................................................GGTCGTGAAGCACCCTTGTCGTTCCT.................................................................................. 26 0 1 2.00 2 2 0 0 0 0 0
.................................................................................................................................................................................CACCCTTGTCGTTCCTGTAGGTCATCGT...................................................................... 28 1 1 1.00 1 0 1 0 0 0 0
...........................................................................................................................................................................GTGAAGCACCCTTGTCGTTCCTGT................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................GCGCTTACCTTTTATTCCTGTAGCTT.................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0
............................................................................................................TTCTGGCGGGTTACTTTCACGTTT............................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................................................GTCGTGAAGCACCCTTGTCGTTCCT.................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0
................................................................................TAACAGTTTACTCATTTAA................................................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................................................AAGCACCCTTGTCGTTCCT.................................................................................. 19 0 3 1.00 3 2 1 0 0 0 0
..........................................................................................................................................................................................................CGTTAGGAACGTTGTTGAAAGTCT................................................. 24 0 2 0.50 1 0 0 0 1 0 0
........................................................................................................................................................................................................TTCGTTAGGAACGTTGTTGAAAGTCT................................................. 26 0 2 0.50 1 0 1 0 0 0 0
..........................................................................................................................................................................................................................................CCGTTCGTCCTTGCAGTCGCCGTGGT............... 26 0 2 0.50 1 1 0 0 0 0 0
.......................................................................................................................................................................................................CTTCGTTAGGAACGTTGTTGAAAGTCT................................................. 27 0 2 0.50 1 1 0 0 0 0 0
..................................................................................................................................................................................................................................................CCTTGCAGTCGCCGTGGTTGCTCCTG....... 26 0 2 0.50 1 0 1 0 0 0 0
...............................................................................................................................................................................AGCACCCTTGTCGTTCCTGTAGGT............................................................................ 24 0 20 0.30 6 0 6 0 0 0 0
..................................................................................................................................................................................................TGGGTATTCGTTAGGACCGT............................................................. 20 3 4 0.25 1 0 0 0 0 1 0
.......................................................................................................................................................CTTGTAGCTTCTCGAGGGT......................................................................................................... 19 2 4 0.25 1 0 0 0 0 0 1
.....................................................................................................................................................................................................................TTGTTGAAAGTCTCCGCCTTC......................................... 21 3 5 0.20 1 1 0 0 0 0 0
.............................................................................................................................................................................AAAGCACCCTTGTCGTTCCT.................................................................................. 20 1 5 0.20 1 0 1 0 0 0 0
............................................................................................................................................................................AAAAGCACCCTTGTCGTTCCT.................................................................................. 21 2 6 0.17 1 0 1 0 0 0 0
...........................................................................................................................................................................AAAAAGCACCCTTGTCGTTCCT.................................................................................. 22 3 7 0.14 1 1 0 0 0 0 0
.....................................................................................................................................................................................................................................................TGCAGTCGCCGTGGTTGTTCC......... 21 1 20 0.05 1 1 0 0 0 0 0
...............................................................................................................................................................................AGCACCCTTGTCGTTCCTGTAGGTC........................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
...................................................................................................................................................................................CCCTTGTCGTTCCTGTAGTT............................................................................ 20 1 20 0.05 1 0 1 0 0 0 0
................................................................................................................................................................................GCACCCTTGTCGTTCCTGTAGGTCT.......................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
...................................................................................................................................................................................CCCTTGTCGTTCCTGTAGGTCT.......................................................................... 22 0 20 0.05 1 1 0 0 0 0 0
.................................................................................................................................................................................CACCCTTGTCGTTCCTGCTAG............................................................................. 21 3 20 0.05 1 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6500:31116162-31116436 - dmo_1730 AAGCAGGGCCTGTGGCTGGGCTATAAGAGGCCGCTCGCAGCTCCATACGGGTTAGTCAAAGAAATAGAAAAATGAGAGTGATTGTCAAATGAGTAAATTGAGAACTGAAAGACCGCCCAATGAAAGTGCAAAGTACGCGAATGGAAAATAAGGACATCGAAGAACTCCCAGCACTTCGTGGGAACAGCAAGGACATCCAGAAGCAATCCTTGCAACAACTTTCAGAGGAGAAGGGGCAAGCAGGAACGTCAGCGGCACCAACGAGGACATTGATG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
AAGCAGGGCCTGTGGCTGGGCTATAAGAGGCCGCTCGCAGCTCCATACGGGTTAGTCAAAGAAATAGAAAAATGAGAGTGATTGTCAAATGAGTAAATTGAGAACTGAAAGACCGCCCAATGAAAGTGCAAAGTACGCGAATGGAAAATAAGGACATCGAAGAACTCCCAGCACTTCGTGGGAACAGCAAGGACATCCAGAAGCAATCCTTGCAACAACTTTCAGAGGAGAAGGGGCAAGCAGGAACGTCAGCGGCACCAACGAGGACATTGATGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................................................TAGTCAAAGAAATAGAAAAATGAGAG.....................................................................................................................................................................................................2620.501100000
................................................................................................................................................................................................ACATCCAGAAGCAATCCTTGCA.............................................................2220.501100000
.......................................................................................................................................................................................ACAGCAAGGACATCCAGAAG........................................................................2020.501100000
................................................................................................................................................................................................ACATCCAGAAGCAATCCTTGCAACA..........................................................2520.501100000
..GCAGGGCCTGTGGCTGGGCTA............................................................................................................................................................................................................................................................21140.071000100

Generated: 05/18/2015 at 01:10 AM