ID:

dmo_1726

 Coordinate:

scaffold_6500:30784681-30784831 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-8.5 -7.7 -7.6 -7.6

Flybase annnotation

CDS [Dmoj\GI18277-cds]; exon [dmoj_GLEANR_3092:3]; intron [Dmoj\GI18277-in]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+
mature
  1. dmo_1726  scaffold_6500:30784740-30784767 +
  2. scaffold_6500:30806752-30806779 +
star
  1. dmo_1726  scaffold_6500:30784794-30784820 +
  2. scaffold_6500:30806806-30806832 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TATTTTGATCCTATTGTAGAACAATTTTTTATACAAATTATAAAATATTACAGCGTGTTTCGTTTTTCATTACGGTGACTTTACTGGTACACTATAAATATGAGCAGAATATGTTAAATATTCCATTTGCTTCGAGCAAATATTCTTTATATCGAAAATTTTAAAACATATGAACTATTAATATTTTTGATTTATTTGAAGGCTATGCGAGCATTCATTGAATCCAATTTCAAATTGCTGGATATTGACAA
*************************************************************************************************************......................((((...((((((.(((((((...............))))))).....)))))).))))************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body		 V056
head
.............................................................................................................TATGTTAAATATTCCATTTGCTTCGAGC.................................................................................................................. 28 0 2 2.50 5 3 1 1 0
.......................................................................................TACACTATAAATATGAGCAGAATATG.......................................................................................................................................... 26 0 2 2.50 5 5 0 0 0
.......................................................................................TACACTATAAATATGAGCAGAATATGT......................................................................................................................................... 27 0 2 2.00 4 3 1 0 0
.............................................................................................................TATGTTAAATATTCCATTTGCTTCGAG................................................................................................................... 27 0 2 1.50 3 3 0 0 0
...................................................................................................................................................................AAACATATGAACTATTAATATTTTTGA............................................................. 27 0 2 1.50 3 3 0 0 0
...................................................................................................................................................................AAACATATGAACTATTAATATTTTTG.............................................................. 26 0 2 1.00 2 2 0 0 0
.........................................................................................................................................................................................TTTGATTTATTTGAAGGCTATGCGAGC....................................... 27 0 1 1.00 1 1 0 0 0
..............................................................................................................................................................................................TTTATTTGAAGGCTATGCGAGCAT..................................... 24 0 1 1.00 1 1 0 0 0
..................................................................................................................................................................................GAATATTTTTGATTTATTTGAAGGC................................................ 25 1 1 1.00 1 1 0 0 0
..........................................................................................................................................................................................TTGATTTATTTGAAGGCTATGCGAGCA...................................... 27 0 1 1.00 1 1 0 0 0
..................................................................................................................................................................................................TTTGAAGGCTATGCGAGCATTC................................... 22 0 1 1.00 1 0 1 0 0
..........................................................................................................................................................................................TTGATTTATTTGAAGGCTATGCGAG........................................ 25 0 1 1.00 1 1 0 0 0
.............................................................................................................................................................................................ATTTATTTGAAGGCTATGCGAGCATTC................................... 27 0 1 1.00 1 1 0 0 0
........................................................................................................................................................................TATGAACTATTAATATTTTTGATTTA......................................................... 26 0 2 1.00 2 2 0 0 0
..............TGTAGAACAATTTTTTATACAAATT.................................................................................................................................................................................................................... 25 0 2 0.50 1 1 0 0 0
...................................................................................................................................................................AAACATATGAACTATTAATATTTTTGATT........................................................... 29 0 2 0.50 1 1 0 0 0
...........................................................TCGTTTTTCATTACGGTGACTTTA........................................................................................................................................................................ 24 0 2 0.50 1 1 0 0 0
.......................................................................................TACACTATAAAGATGAGCAGAATATGT......................................................................................................................................... 27 1 2 0.50 1 1 0 0 0
.................................................................................................................................................................TAAAACATATGAACTATTAATATTT................................................................. 25 0 2 0.50 1 1 0 0 0
................................................................TTTCATTACGGTGACTTTACTGGTACAC............................................................................................................................................................... 28 0 2 0.50 1 0 1 0 0
.........................................................................................................................................................................................................................TTGAATCCAATTTCAAATTGCTGGATA....... 27 0 2 0.50 1 1 0 0 0
.................................................ACAGCGTGTTTCGTTTTTCATTACGG................................................................................................................................................................................ 26 0 2 0.50 1 1 0 0 0
.................................................................................................................................................TTTATATCGAAAATTTTAAAACATA................................................................................. 25 0 2 0.50 1 1 0 0 0
...............................................TTACAGCGTGTTTCGTTTTTCATTAC.................................................................................................................................................................................. 26 0 2 0.50 1 1 0 0 0
....................................................................................................................................................................................................................................TTCAAATTGCTGGATATTG.... 19 0 2 0.50 1 0 0 1 0
.............................TATACAAATTATAAAATATTACAGCGTG.................................................................................................................................................................................................. 28 0 2 0.50 1 1 0 0 0
........................................................................................ACACTATAAATATGAGCAGAATAT........................................................................................................................................... 24 0 2 0.50 1 1 0 0 0
.............................TATACAAATTATAAAATATTACAGCGTGT................................................................................................................................................................................................. 29 0 2 0.50 1 1 0 0 0
.............TTGTAGAACAATTTTTTATACAAATT.................................................................................................................................................................................................................... 26 0 2 0.50 1 1 0 0 0
.......................................................................................TACACTATAAATATGAGCAGAATAT........................................................................................................................................... 25 0 2 0.50 1 1 0 0 0
..........................................................TTCGTTTTTCATTACGGTGACTTT......................................................................................................................................................................... 24 0 2 0.50 1 1 0 0 0
.............................................................................................................TATGTTAAATATTCCATTTGCTTCGA.................................................................................................................... 26 0 2 0.50 1 1 0 0 0
.........................................................................................................................................................................................................................TTGAATCCAATTTCAAATTGCTGG.......... 24 0 2 0.50 1 1 0 0 0
..............................................................................................TAAATATGAGCAGAATATGTTAAAT.................................................................................................................................... 25 0 2 0.50 1 0 1 0 0
..............................................................................................................ATGTTAAATATTCCATTTGCTTCGCCC.................................................................................................................. 27 2 2 0.50 1 1 0 0 0
......................................................................................................................................................................................................................TCATTGAATCCAATTTCAAATTGCTGGA......... 28 0 2 0.50 1 1 0 0 0
................................................TACAGCGTGTTTCGTTTTTCATTACGG................................................................................................................................................................................ 27 0 2 0.50 1 1 0 0 0
..........................................................................................................................................................................................................................TTAATCCAATTTCAAATTGCTGGAC........ 25 2 2 0.50 1 0 1 0 0
...........................................................................................................................................................................................................TATGCGAGCATTCATTGAATCCAAT....................... 25 0 2 0.50 1 1 0 0 0
.......................................................................................................................ATTCCATTTGCTTCGAGCAAAT.............................................................................................................. 22 0 2 0.50 1 1 0 0 0
................................................................TTTCATTACGGTGACTTTACTGG.................................................................................................................................................................... 23 0 2 0.50 1 0 1 0 0
................................................TACAGCGTGTTTCGTTTTTCATTA................................................................................................................................................................................... 24 0 2 0.50 1 1 0 0 0
.......................................................................................................................ATTCCATTTGCTTCGAGC.................................................................................................................. 18 0 2 0.50 1 1 0 0 0
.........................................................................................................................................................................ATGAACTATTAATATTTTTGATTTA......................................................... 25 0 2 0.50 1 1 0 0 0
.................................................................................TACTGGTACACTATAAATATGAGC.................................................................................................................................................. 24 0 2 0.50 1 1 0 0 0
.......................................................................................TACACTATAAATATGAGCAGAATATGTT........................................................................................................................................ 28 0 2 0.50 1 1 0 0 0
.............................................................................................................TATGTTAAATATTCCATTTGCTTCG..................................................................................................................... 25 0 2 0.50 1 1 0 0 0
...................................................................................................................................................................AAACATATGAACTATTAATATTTTTGAT............................................................ 28 0 2 0.50 1 0 1 0 0
...................................................................................................................................................................AAACATATGAACTATTAATATTT................................................................. 23 0 2 0.50 1 1 0 0 0
.............................................................................................ATAAATATGAGCAGAATATGT......................................................................................................................................... 21 0 2 0.50 1 1 0 0 0
....................................................................................................TGAGCAGAATATGTTAAATAT.................................................................................................................................. 21 0 2 0.50 1 1 0 0 0
.............................................TATCACAGCGAGTTTCGTGTT......................................................................................................................................................................................... 21 3 4 0.25 1 0 0 0 1
..........................................................TGCGGTTTTCATTACGGT............................................................................................................................................................................... 18 2 6 0.17 1 1 0 0 0
..................................................................................................................................................................AAACCATTTGAACTATTAA...................................................................... 19 2 8 0.13 1 1 0 0 0
....................................................................................................................................................................................................................ATTGATTGAATCCAATCTGAA.................. 21 3 17 0.06 1 1 0 0 0

Anti-sense strand reads

ATAAAACTAGGATAACATCTTGTTAAAAAATATGTTTAATATTTTATAATGTCGCACAAAGCAAAAAGTAATGCCACTGAAATGACCATGTGATATTTATACTCGTCTTATACAATTTATAAGGTAAACGAAGCTCGTTTATAAGAAATATAGCTTTTAAAATTTTGTATACTTGATAATTATAAAAACTAAATAAACTTCCGATACGCTCGTAAGTAACTTAGGTTAAAGTTTAACGACCTATAACTGTT
*************************************************************......................((((...((((((.(((((((...............))))))).....)))))).))))************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V056
head
 V110
male body
......................................................................................................................................................................................................CTCCGATACGCTCGTAAGTAACTTAG........................... 26 1 1 1.00 1 1 0 0 0
..........................................................................................................CTTATACAATTTATAAGGTAAACGAAGCT.................................................................................................................... 29 0 2 0.50 1 1 0 0 0
............................................................................................CTATTTATACTCGTCTTATACAATTTA.................................................................................................................................... 27 1 2 0.50 1 1 0 0 0
.......................................................................................................................................................AGCTTTTAAAATTTTGTATACTTGATA......................................................................... 27 0 2 0.50 1 1 0 0 0
.........................................................................................................................................................CTTTTAAAATTTTGTATACTTGATA......................................................................... 25 0 2 0.50 1 1 0 0 0
...................................................................................................................................................ATATAGCTTTTAAAATTTTGTATACT.............................................................................. 26 0 2 0.50 1 1 0 0 0
................................................................................................................CAATTTATAAGGTAAACGAAGCTCG.................................................................................................................. 25 0 2 0.50 1 0 1 0 0
.............................................................................................................................AAACGAAGCTCGTTTATAAGAAAT...................................................................................................... 24 0 2 0.50 1 0 1 0 0
.......................................................................................................................................................AGCTTTTAAAATTTTGTATACTTTA........................................................................... 25 1 2 0.50 1 0 1 0 0
......................................................................................................................................................CAGCTTTTAAAATTTTGTATACTTGATA......................................................................... 28 1 2 0.50 1 1 0 0 0
................................................................................................................................CGAAGCTCGTTTATAAGAAATA..................................................................................................... 22 0 2 0.50 1 1 0 0 0
..............................................................................................................................................................................................................................AGGTTAAAGTTTAACGACCTATAACTGT. 28 0 2 0.50 1 1 0 0 0
...........................................................................................................................................................TTTAAAATTTTGTATACTTGATAA........................................................................ 24 0 2 0.50 1 1 0 0 0
.............................................................................................................................................................................................................................TAGTTTAAAGTTTGACGACCCA........ 22 3 2 0.50 1 0 0 1 0
......................................................................................................................................................TAGCTTTTAAAATTTTGTATACTTGAGA......................................................................... 28 1 2 0.50 1 0 1 0 0
..........................................................................................................................TGTAAACGAAGCTCGTTTATAAGAAAT...................................................................................................... 27 1 2 0.50 1 1 0 0 0
..........................................TTTATAATGCCGCACAAAGCAAAAAG....................................................................................................................................................................................... 26 1 2 0.50 1 0 1 0 0
.............................................................................TGCCATGACCAAGTGATAT........................................................................................................................................................... 19 3 16 0.06 1 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6500:30784631-30784881 + dmo_1726 TATTTTGATCC-T--------------------------------------AT---TGTAGAACAATTTT------------TTATACAAATTATAA---A------------------------ATATTA------------------------------------------------------------C------------------------------------------------------------------------------------------------------------AGCGTGTTTCG-----TTTTTCATTACGGTGACTTTA---------------------------------------------------------------------------------------------------C-------------------------------------------------------------------------------------------------------------------------------------TGGTACACTATAAATATGAGCAGAATAT-------------------GTT-------------------------------------------------------------------------------------------------------------------AAATATTCCATTTGCTTCGAGCAAATATT-----------------------------------------CTTTAT--ATCGAAAA-TTTTAAA----------------------------------------------------------------------------------------------------------------------------ACATATGAAC---------TATTAATATTTTTGATTTATTTGAAG----------------------------------------------GCTATGCGAGC---------A-TTCATTGAATCCAATTTCAAATTG--------------CTGG--------------------------ATATTGACAA
droVir3 scaffold_12958:3540768-3541044 + GCTTTCAGTGA-CCCATTTACA------------------------------------ATGG----ATTT------------TTAAA------------TAAATTCTAGTTACTAATATTATAAAATATTCT----------C------------------ACAGATTTGG-------------------------------------------------------------------------------------------------------------------------------------------------TTTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGTGCTTGTAGTTTGGAAATTTGGGACAGAGTT-AAGCTTCCGAAAATG------------------AGCACAATATGATAACGTTTTATTCGCTCTTTTAGAATTTAAAATGAATGCTACATATTTG----TATTAATTAAACAAA---------------------------------------------------------------------------------------------------------------------TATATACTATTTATCAATTT------GGTG-GAAAATT-ATA------------------------------------------------------------------------AT-----------------------------------------------------------------------------------------------------------TATTCA------------------------------------------------------------ATTTAAATTTATATTT--------------C-----------------------------TTATAAACAA
droGri2 scaffold_15074:4141533-4141702 - TATTCTCAAAT-T--------------------------------------AT---AACC-A----TTTC------------ATATAAGGAGTTCAT---A------------------------TCTTTT-GAGCTGGCCTTCC-----------------------GATGCCCATT----------------------------------------------------------------------------------------------------------------------------------------------------CGATTTCTTTA---------------------------------------------------------------------------------------------------C-------------------------------------------------------------------------------------------------------------------------------------TTA--------------------------------------------------------------------------------------------------------------CTTACTGATAAGTTGGATTAGCTATTAGAAATAACAGCATGAAGTATTCATTAATTATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGG---------------CCACAAAAAATTATTTACAT
droWil2 scf2_1100000004909:1031995-1032242 - TGATTTAATTT-TAGTTTTTAACTTTTACATAATTTATGATTGGAAACTA-TA---AA-A-----------C---------------------------CATTTGTTG-----------------------------------------------------------------------------------------T------------------------A--TTCATTTCAGATAGCAAT--GGACGAACCATAAAAACCTTTTCTAATTTGTTGGGTTTGTGCTTAAATA-----------------------------------------------------------------------------------------------------------------------------------TT--------------------------------------TCTACATTTGCAAGCTGAATATA----------------------------------------------------------------------------------------------------CA------------------------------------------------TAAAT----------TATTAATTATATCAA---------------------------------------------------------------------------------------------------------------------AGCTAACTATTTCTTTGTT-----------------------------------------------------------------------------------------------------------------------------------------T------------------T-------------------------------TTGTAGATTCTGCAATGATTCATCCAAAACA-----------------------------------------------------------TCAAAT----------------------------------------------GCTTAGAAAT
dp5 4_group1:4658557-4658767 + AATTATTATTC-TTGATTTTTA------------------------------------TTGAATAATT------------------------------------GTTATTTTTGATTTT--------------------------------------------------------------TATTGAATAAT--------------------------------------------------------------------------------------------------------------------------------------TGTTATTTTTGAT------------TTT-------TATT------GAATAATT-----GTTATTATAACTGTTATTCTTGATTTTTATTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATA----------------------------------------------------------------------ATTGTTTTTTTTTTTATTTTTT----------------------------------------------------------------TGAATAATTGTT-----------------------------------------ATTATA--ATTGTTAT-TTTTGAT----------------------------------------------------------------------------------------------------------------------------TTTTTTGAAT---------AATTGTTATT--------------------------------------------------------------------------------------------------------------------------CTTGA-------------------------TTTTTTTGAA
droPer2 scaffold_9:948891-949082 - AATTTTTATTC-TTGATTTTTA------------------------------------TTGAATAATTAT------------TAT---------TA---TAATTGTTATTCTTGATTTT--------------------------------------------------------------TATTGTATAAT--------------------------------------------------------------------------------------------------------------------------------------TATTATTTTTGAT------------TTT-------TACT------GAATAATT-----ATTATTATAATTGTTATTCTTGATTTTTATTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAATATT-----------------------------------------ATTTTTGGATCAAAAC-AT----------------------------------------------------------------------------------------------------------------------------------TTATTATAT---------AATTATTATT--------------------------------------------------------------------------------------------------------------------------TTTGA--------------------T----TTTTATTGAA
droAna3 scaffold_12948:332166-332385 - AATTAAAGAT--T--------------------------------------AA---AGTAAATCAAATAGGGGTGTAC----------AA-------------------------ATTT-----------------------AAGAG----------------------------------------------------------------------------------------------------------------AACCGTTT----------------------------------------------------------TTAAT------------------------CTT----AAATTTTT-AGAA-----TAGTTGC---------------------------TTTTGAAATACGCTACTACAATACGA------------------------------------TAAATT----------------GAGCAGAAAGATATTAAAGTCAA---------------AGGAATTTTAAA-GATTTT-AAA--------------------------------------------------------------------------------GTCTTTATTTTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT---------------------------TTAAGGTA---------TGTGTAAATAAAA------------------------------------------------------------------------------------------------GGAATATTTCTATTTTGA--------------------------AT-TTAGACA
droBip1 scf7180000396518:132852-133091 - AATTTTTATTTATTTTTT----------------------------------------TATAAAAATT-G------------A------------AAAATAATTCTTATTCTTTAATAT--------------------------------------------------------------TATCAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA-------------------------------------------------------------AATTGAAAATAAGAGTTATATTTTAA----TTTTTGTCATAAAA------------------------------------------------------------------------------------ATCAACAAATAAT-----------------------------------------TTTTAT--TTTAAAAA-TTACAATAATTACGGTCCCTGGTAAGAAAATTCGAAAAATTCTTCTTTTTTAGGTCGTGCAAGTGCGTATAACCCCTT--------------------------------------------------------AAATTAA---------AATATTAATT--------------------------------------------------------------------------------------------------------------------------CTTGA-------------------------CTTTTTTTAA
droKik1 scf7180000302386:371183-371395 - TACTAAGCCA-----------------------------------------AA---AA-A-----------------------------------------------------------------------------------------------------------------------------------GCATCAA------------------------A--TTCAATTCGAAAAG--------------------T------------------------------------------TTTTCTGTGCTAGTTT--TTTCTAGGGTAACAAAA---------------------------------------------------------------------------------------------------CTG------------------------------------CATACTAAATTTA---------AAATGTAAAAAAATTGAAATTATTGGCAATTTCTTTTTGGCAATTTCAAC-AATTTT-AGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------------------------------------------------------------------------------------------------------------------------------------CCTC-AAAAA---------C--------------------------------AAAAA---A---------ATTTTTTTTTTTTTAATTTCGGCTAAACGTGG---------C-TAGAT-----------------------------------TGA-------------------------CT-CCGCTTT
droFic1 scf7180000452724:12727-12926 - TGAATTTCGAT-G------A--------------------------------C---A-TCGAACAAATACTGT----------------------------------------------------------------------------------------------------------------------------AAATAGTAATACAATATATCTTTATCTTTAG----------------------------------------------------------------------------------------------------GT------------------------CTT----GATTTTTTTGGAG-----AATTTGC---------------------------AAG-TGACTACGAAAATGCATTACTA------------------------------------CAAACTGGATTTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAG-TTTCA------------------------------AATATT------------------------------ATTACTTCTA-----ATATGTGGCTTAAT-------------------T------------------TATATGAATACA------------------------------------------------------------------------GCCATAGGAGT---------A-A-------------------------------------------------------------------CCATTATATC
droEle1 scf7180000491273:706239-706476 + CAAATTTAAAT-A------C------------------------------CAA---T-----------GCTGCTTTAC----------CT-------------------------CCTT--------------------------------------------------------------TCTTGAAAAACCATGAAGGT---------------------------------------------------------------------------------------------------------------TTACTT--ATA-AATAGTCCATTTCACTTCCGCTAGAAG---TTTTTTT----AC-----GT-----G---------------------------------------------------------------------------------------------------------------------------------------------------------------CTTAAAT-CGATGTCATGGATAG-------------------------------------------------------------AATTTGGGATAATATTTCTTTAATTAATAT----TTATATAATT----------------------------------------------GTAAATTAATAAATTATTCATAAATAAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTG-----TATAATATAGAGAA--------------------------------------------------------------------------------------------ACTGTGAAAAT---------C-A-----------------------------------ATATTGA-------------------------AT-TACCAGA
droRho1 scf7180000778513:10317-10526 - AATTTTTTTTC-TT--------------------------------------T---TAAAAT----ATTGTTATATTAATAATAT---------TT---TATTTTT--------------------------------------------------------------TATTCTTGTTTAAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT----TATTAT-----AT-TAATAATATGT---------------------------TAA-AATATTTGAAACTATTTTTATA------------------------------------TTAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA-----ATATTTGAAAATAT-------------------A------------------ACATATAAAACT---------TTTTAATGTTTTT------------------------------------------------------------------------------------------------AAAGATTATATTAAAATGTTCAATACTCATTTAATTGCGATTTAATATTATTAA
droBia1 scf7180000302512:132333-132577 + TACTTTGAATT-TTAAA-----------------------------------------AC-A----CTTT------------GTAAGTAAAAT--------------------------------------------------------------------------------------TGTTTTAAAAAGTCATACAAATAATTTTACAATGACTCATTACCTTTCCATTTTTGGTAGCAAAATAAATATTTTGTAAAAAACATTTCTCCTATATTTTG---------------------------------------------------------------------------------------------------------T---------------------------TAA-AATAAACGTT--------------------------------------TTAAGCTTTAAAGA-TAAAATTGCGAAATTTTAAACATAAAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACTAATTGTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------CAGGAACTTAAAACAC---------AACCGAATTT--------------------------------------------------------------------------------------------------------------------------CGAGA-------------------------GCATTGACGA
droTak1 scf7180000415395:490065-490269 - AATTTTAAAAT-T--------------------------------------AC---AATAAAATAAATTCTGTTTTAT----------AT-------------------------ATTT-----------------------TTCAA------------------------------------TTCCATAA--------------------------------------------------------------------------------------------------------------------------------------TTTATTTTTTTCACTTAC-----------------------------AT-----A---------------------------------------------------------------------------------------------------------------------------------------------GGTATTTTTAG-------ATCAAAT-CTAAGACAAGGTAAGAACATTTGTAACGAACAAAAAT---G----T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAATTATAAGACAATATTTT---------------------------------------------------------------------------------------------------------TTTTAAATTAACTTTAAAGTGGTATGCAGATATTTAAT----------------------------------TTA--------------------------AT-TTAATTT
droEug1 scf7180000408984:226453-226698 + AAATTAAACTT-A--------------------------------------ATTGAAGCCAGAA--GA--CG---------------------------TATTT-----------TTTA--------------------------------------------------------------TATTCGGAAAA-------------------------------------------------------------------CACTG--------------------------------------TTTCTTATGTTTATTT--ATATTACAGTAACTATAATATATTCTATAGG---TTTACTT----AC-----AT-----T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCA-------------------CATTTATATGTT-------------------------------------------------------------------------------------------------------------------TAGCAATGCATATGTTTGCAGTGCACTTTTATTTAATTAATGTGTGTGAGTGTTAAT-----------------------------------------------------------------------------------------------------------------------------------------------------AGTGTGCTTAAATTTTTAAAAC---------T------------------------------------ATCTA---------ATCTATT------------------------------------------------TATTTTACATTT--------------CTGG--------------------------AA-ATAATTG
dm3 chrX:22057389-22057560 - CAGTTTTTAAT-T--------------------------------------GT---AGTA-T----GGCCTAAATTTT----------AG-------------------------AATT-----------------------TCCAATTCAATGGCTCATTAAAGATATTTGTTAGCTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATTTAAG------------------------------------------------CAAAA----------TATTA--------------------------------------------------------------------------------------------------------------------ATCTATATGAAAGTAAA-TATCCCAAAGAG-TTTTAT--AA------------------------------------------------------------------------------------------------------------------------------------------TATA-GAAGG---------C--------------------------------AACAATTCGATTTAAGCG-----------------------------------------------------------ATA-------------------------------------------------TATATGTAAG
droSim2 3l:22473674-22473869 - TATATTTAACA-A------T------------------------------AAT---T--------------------------------------------------------------------------------------------------------AAAAATTTGTTTTTGTTTTGATTTAAGAAATTACGAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTGAT-TAGAGCTATGGTTTCCGTAATTGTGGTGCACTATAAA---GAGCGTAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTATGCATA----------------------------------------------------------------------------------------------------------TCTGTTTTTA-----AAATATGACTTCAT-------------------A------------------TTTAATGAGACA---------TTTGCAAGCAAAC------------------------------------------------------------------------------------------------ACAGAATATATATTCTTGA-------------------------TC-AGTTCAA
droSec2 scaffold_41:13286-13481 - TATATTTAACA-A------T------------------------------AAT---T--------------------------------------------------------------------------------------------------------AAAAATTTGTTTTTGTTTTGATTTAAGAAATTACGAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTGAT-TAAAGCTATGGTTTCCGTAATTGTGGTGCACTATAAA---GAGCGTAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTATGCATA----------------------------------------------------------------------------------------------------------TCTGCTTTTA-----AAATATGACTTCAT-------------------A------------------TTTAATGAGACA---------TTTGCAAGCAAAC------------------------------------------------------------------------------------------------ACAGAATATATATTCTTGA-------------------------TC-AGTTCAA
droYak3 v2_chr2h_random_004:504012-504321 + TATCATCTTTG-TT--------------------------------------T---GGTTGAACGATTAA-------------------------AAAAAAAATGTTATATATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTTTGAATTTAAAAACCTAAGAACATGTATGT-----TTGTACACAATGTTTCCTTTAAT------------TTT-------CCTA------AAACTAAA-----ATTAAAATAAAAAACAAATTTTTTTT---TTTTTAAATACTTCCTTAAAATACAAAAAAAAACAAATGTTGTCTATTTCCTA---------T---------------------------------------------------------------------------------------------------------AA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTT------AAAA-AAAAAAT-TTA------------------------------------------------------------------------GTTA-----TAAAATAACTTCAT-------------------A------------------TTTTC--------------------CAAAAGGAGGAAG----------------------------------------------ATTTAATGTGC---------A-CACA---------------------TATCGAATAAGCACTGTA---------------TCAAATCAGAACATTGGGAA
droEre2 scaffold_4845:1765511-1765689 - ACCTCAATCA------------------------------------------T---AATG-A----ATTCTTCTTCCACACATTT---------CT---TGTTTCA--------------------------------------------------------------TTTTCTCG--------------------------------------------------------------------------------------------------------------------------------------------------------------ATAACAGA------------------------------------------------------------------------------------T--------------------------------------TCTACCCCACCTACCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGATATACATATCTGTATAATATATTATATATCATAATCATCATTCGTCAATTATTTCAAATTTTTTG------------------GCATGTAGGAATT----------------------------------------------------------------------------------------------------------------------------ATCAATAATTTT-------------------------TT-CGTTTAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
TATTTTGATCC-T--------------------------------------AT---TGTAGAACAATTTT------------TTATACAAATTATAA---A------------------------ATATTA------------------------------------------------------------C------------------------------------------------------------------------------------------------------------AGCGTGTTTCG-----TTTTTCATTACGGTGACTTTA---------------------------------------------------------------------------------------------------C-------------------------------------------------------------------------------------------------------------------------------------TGGTACACTATAAATATGAGCAGAATAT-------------------GTT-------------------------------------------------------------------------------------------------------------------AAATATTCCATTTGCTTCGAGCAAATATT-----------------------------------------CTTTAT--ATCGAAAA-TTTTAAA----------------------------------------------------------------------------------------------------------------------------ACATATGAAC---------TATTAATATTTTTGATTTATTTGAAG----------------------------------------------GCTATGCGAGC---------A-TTCATTGAATCCAATTTCAAATTG--------------CTGG--------------------------ATATTGACAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT-------------------GTT-------------------------------------------------------------------------------------------------------------------AAATATTCCATTTGCTTCGAGC...................................................................................................................................................................................................................................................................................................................................................................................................2822.505300011
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTATAAATATGAGCAGAATAT-------------------G..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2622.505500000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTATAAATATGAGCAGAATAT-------------------GT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2722.004300010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT-------------------GTT-------------------------------------------------------------------------------------------------------------------AAATATTCCATTTGCTTCGAG....................................................................................................................................................................................................................................................................................................................................................................................................2721.503300000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA----------------------------------------------------------------------------------------------------------------------------ACATATGAAC---------TATTAATATTTTTGA.............................................................................................................................................................2721.503300000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA----------------------------------------------------------------------------------------------------------------------------ACATATGAAC---------TATTAATATTTTTG..............................................................................................................................................................2621.002200000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGATTTATTTGAAG----------------------------------------------GCTATGCGAGC---------................................................................................2711.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATTTGAAG----------------------------------------------GCTATGCGAGC---------A-T.............................................................................2411.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATTTATTTGAAG----------------------------------------------GCTATGCGAGC---------A-..............................................................................2711.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAAG----------------------------------------------GCTATGCGAGC---------A-TTC...........................................................................2211.001000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATTTATTTGAAG----------------------------------------------GCTATGCGAG..........................................................................................2511.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATTTGAAG----------------------------------------------GCTATGCGAGC---------A-TTC...........................................................................2711.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGAAC---------TATTAATATTTTTGATTTA.........................................................................................................................................................2621.002200000
........................................................TGTAGAACAATTTT------------TTATACAAATT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.501100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA----------------------------------------------------------------------------------------------------------------------------ACATATGAAC---------TATTAATATTTTTGATT...........................................................................................................................................................2920.501100000
....................................................................................................................................................................................................................................................................................................................TCG-----TTTTTCATTACGGTGACTTTA---------------------------------------------------------------------------------------------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.501100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAA----------------------------------------------------------------------------------------------------------------------------ACATATGAAC---------TATTAATATTT.................................................................................................................................................................2520.501100000
..............................................................................................................................................................................................................................................................................................................................TTTCATTACGGTGACTTTA---------------------------------------------------------------------------------------------------C-------------------------------------------------------------------------------------------------------------------------------------TGGTACAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2820.501000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAATCCAATTTCAAATTG--------------CTGG--------------------------ATA.......2720.501100000
..................................................................................................................................A------------------------------------------------------------C------------------------------------------------------------------------------------------------------------AGCGTGTTTCG-----TTTTTCATTACGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2620.501100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAT--ATCGAAAA-TTTTAAA----------------------------------------------------------------------------------------------------------------------------ACATA..........................................................................................................................................................................................2520.501100000
................................................................................................................................TTA------------------------------------------------------------C------------------------------------------------------------------------------------------------------------AGCGTGTTTCG-----TTTTTCATTAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2620.501100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAATTG--------------CTGG--------------------------ATATTG....1920.501000001
...................................................................................TATACAAATTATAA---A------------------------ATATTA------------------------------------------------------------C------------------------------------------------------------------------------------------------------------AGCGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2820.501100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACTATAAATATGAGCAGAATAT-------------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.501100000
...................................................................................TATACAAATTATAA---A------------------------ATATTA------------------------------------------------------------C------------------------------------------------------------------------------------------------------------AGCGTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2920.501100000
....................................................T---TGTAGAACAATTTT------------TTATACAAATT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2620.501100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTATAAATATGAGCAGAATAT-------------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.501100000
...................................................................................................................................................................................................................................................................................................................TTCG-----TTTTTCATTACGGTGACTTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.501100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT-------------------GTT-------------------------------------------------------------------------------------------------------------------AAATATTCCATTTGCTTCGA.....................................................................................................................................................................................................................................................................................................................................................................................................2620.501100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAATCCAATTTCAAATTG--------------CTGG--------------------------..........2420.501100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAATATGAGCAGAATAT-------------------GTT-------------------------------------------------------------------------------------------------------------------AAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................2520.501000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATTGAATCCAATTTCAAATTG--------------CTGG--------------------------A.........2820.501100000
.................................................................................................................................TA------------------------------------------------------------C------------------------------------------------------------------------------------------------------------AGCGTGTTTCG-----TTTTTCATTACGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2720.501100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCGAGC---------A-TTCATTGAATCCAAT...............................................................2520.501100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCATTTGCTTCGAGCAAAT...............................................................................................................................................................................................................................................................................................................................................................................................2220.501100000
..............................................................................................................................................................................................................................................................................................................................TTTCATTACGGTGACTTTA---------------------------------------------------------------------------------------------------C-------------------------------------------------------------------------------------------------------------------------------------TGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.501000010
.................................................................................................................................TA------------------------------------------------------------C------------------------------------------------------------------------------------------------------------AGCGTGTTTCG-----TTTTTCATTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.501100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCATTTGCTTCGAGC...................................................................................................................................................................................................................................................................................................................................................................................................1820.501100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAC---------TATTAATATTTTTGATTTA.........................................................................................................................................................2520.501100000
...............................................................................................................................................................................................................................................................................................................................................TA---------------------------------------------------------------------------------------------------C-------------------------------------------------------------------------------------------------------------------------------------TGGTACACTATAAATATGAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.501100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTATAAATATGAGCAGAATAT-------------------GTT-------------------------------------------------------------------------------------------------------------------.........................................................................................................................................................................................................................................................................................................................................................................................................................2820.501100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT-------------------GTT-------------------------------------------------------------------------------------------------------------------AAATATTCCATTTGCTTCG......................................................................................................................................................................................................................................................................................................................................................................................................2520.501100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA----------------------------------------------------------------------------------------------------------------------------ACATATGAAC---------TATTAATATTTTTGAT............................................................................................................................................................2820.501000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA----------------------------------------------------------------------------------------------------------------------------ACATATGAAC---------TATTAATATTT.................................................................................................................................................................2320.501100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAATATGAGCAGAATAT-------------------GT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.501100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCAGAATAT-------------------GTT-------------------------------------------------------------------------------------------------------------------AAATAT...................................................................................................................................................................................................................................................................................................................................................................................................................2120.501100000
droVir3
GCTTTCAGTGA-CCCATTTACA------------------------------------ATGG----ATTT------------TTAAA------------TAAATTCTAGTTACTAATATTATAAAATATTCT----------C------------------ACAGATTTGG-------------------------------------------------------------------------------------------------------------------------------------------------TTTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGTGCTTGTAGTTTGGAAATTTGGGACAGAGTT-AAGCTTCCGAAAATG------------------AGCACAATATGATAACGTTTTATTCGCTCTTTTAGAATTTAAAATGAATGCTACATATTTG----TATTAATTAAACAAA---------------------------------------------------------------------------------------------------------------------TATATACTATTTATCAATTT------GGTG-GAAAATT-ATA------------------------------------------------------------------------AT-----------------------------------------------------------------------------------------------------------TATTCA------------------------------------------------------------ATTTAAATTTATATTT--------------C-----------------------------TTATAAACAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droGri2
TATTCTCAAAT-T--------------------------------------AT---AACC-A----TTTC------------ATATAAGGAGTTCAT---A------------------------TCTTTT-GAGCTGGCCTTCC-----------------------GATGCCCATT----------------------------------------------------------------------------------------------------------------------------------------------------CGATTTCTTTA---------------------------------------------------------------------------------------------------C-------------------------------------------------------------------------------------------------------------------------------------TTA--------------------------------------------------------------------------------------------------------------CTTACTGATAAGTTGGATTAGCTATTAGAAATAACAGCATGAAGTATTCATTAATTATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGG---------------CCACAAAAAATTATTTACATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TGATTTAATTT-TAGTTTTTAACTTTTACATAATTTATGATTGGAAACTA-TA---AA-A-----------C---------------------------CATTTGTTG-----------------------------------------------------------------------------------------T------------------------A--TTCATTTCAGATAGCAAT--GGACGAACCATAAAAACCTTTTCTAATTTGTTGGGTTTGTGCTTAAATA-----------------------------------------------------------------------------------------------------------------------------------TT--------------------------------------TCTACATTTGCAAGCTGAATATA----------------------------------------------------------------------------------------------------CA------------------------------------------------TAAAT----------TATTAATTATATCAA---------------------------------------------------------------------------------------------------------------------AGCTAACTATTTCTTTGTT-----------------------------------------------------------------------------------------------------------------------------------------T------------------T-------------------------------TTGTAGATTCTGCAATGATTCATCCAAAACA-----------------------------------------------------------TCAAAT----------------------------------------------GCTTAGAAATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTT-----------------------------------------------------------------------------------------------------------------------------------------T------------------T-------------------------------TTGTAGATTCTGCAATGATT....................................................................................................................................2611.00101000
dp5
AATTATTATTC-TTGATTTTTA------------------------------------TTGAATAATT------------------------------------GTTATTTTTGATTTT--------------------------------------------------------------TATTGAATAAT--------------------------------------------------------------------------------------------------------------------------------------TGTTATTTTTGAT------------TTT-------TATT------GAATAATT-----GTTATTATAACTGTTATTCTTGATTTTTATTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATA----------------------------------------------------------------------ATTGTTTTTTTTTTTATTTTTT----------------------------------------------------------------TGAATAATTGTT-----------------------------------------ATTATA--ATTGTTAT-TTTTGAT----------------------------------------------------------------------------------------------------------------------------TTTTTTGAAT---------AATTGTTATT--------------------------------------------------------------------------------------------------------------------------CTTGA-------------------------TTTTTTTGAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................................................................................................................................................................................................................................................................................................................TATT------GAATAATT-----GTTATTATAACTGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.851700000001700
.........................................................................................................................................................................................................................................................................................................................................................................TATT------GAATAATT-----GTTATTATAACTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.801600000001600
..................................................................................................................................................................................................................................................................................................................................................................................................TATTATAACTGTTATTCTTGATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.50100000000730
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------AATTGTTATT--------------------------------------------------------------------------------------------------------------------------CTTGA-------------------------TTTTTTTGAA26200.2550000000050
..........................................................................................................................................................................................................................................................................................................................................................................................T-----GTTATTATAACTGTTATTCTTGATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.1020000000020
........................................................................................................................................................................................................................................................................................................................................................................................ATT-----GTTATTATAACTGTTATTCTTGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.1020000000200
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTT----------------------------------------------------------------TGAATAATTGTT-----------------------------------------ATTATA--AT.........................................................................................................................................................................................................................................................................................................................................25200.1020000000200
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAT---------AATTGTTATT--------------------------------------------------------------------------------------------------------------------------CTTGA-------------------------TTTT......25110.0910100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTTATTTTTT----------------------------------------------------------------T.......................................................................................................................................................................................................................................................................................................................................................................................................19200.0510001000000
....................................................................................................................................................................................................................................................................................................................................................................................................TTATAACTGTTATTCTTGATTTTTAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.0510000000010
.........................................................................................................................................................................................................................................................................................................................................................................TATT------GAATAATT-----GTTATTATAACTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510100000000
.................................................................................................................................................................................................................................................................................................................................................................................................TTATTATAACTGTTATTCTTGAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510000000100
.........................................................................................................................................................................................................................................................................................................................................................................................TT-----GTTATTATAACTGTTATTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510100000000
droPer2
AATTTTTATTC-TTGATTTTTA------------------------------------TTGAATAATTAT------------TAT---------TA---TAATTGTTATTCTTGATTTT--------------------------------------------------------------TATTGTATAAT--------------------------------------------------------------------------------------------------------------------------------------TATTATTTTTGAT------------TTT-------TACT------GAATAATT-----ATTATTATAATTGTTATTCTTGATTTTTATTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAATATT-----------------------------------------ATTTTTGGATCAAAAC-AT----------------------------------------------------------------------------------------------------------------------------------TTATTATAT---------AATTATTATT--------------------------------------------------------------------------------------------------------------------------TTTGA--------------------T----TTTTATTGAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
AATTAAAGAT--T--------------------------------------AA---AGTAAATCAAATAGGGGTGTAC----------AA-------------------------ATTT-----------------------AAGAG----------------------------------------------------------------------------------------------------------------AACCGTTT----------------------------------------------------------TTAAT------------------------CTT----AAATTTTT-AGAA-----TAGTTGC---------------------------TTTTGAAATACGCTACTACAATACGA------------------------------------TAAATT----------------GAGCAGAAAGATATTAAAGTCAA---------------AGGAATTTTAAA-GATTTT-AAA--------------------------------------------------------------------------------GTCTTTATTTTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT---------------------------TTAAGGTA---------TGTGTAAATAAAA------------------------------------------------------------------------------------------------GGAATATTTCTATTTTGA--------------------------AT-TTAGACASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
AATTTTTATTTATTTTTT----------------------------------------TATAAAAATT-G------------A------------AAAATAATTCTTATTCTTTAATAT--------------------------------------------------------------TATCAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA-------------------------------------------------------------AATTGAAAATAAGAGTTATATTTTAA----TTTTTGTCATAAAA------------------------------------------------------------------------------------ATCAACAAATAAT-----------------------------------------TTTTAT--TTTAAAAA-TTACAATAATTACGGTCCCTGGTAAGAAAATTCGAAAAATTCTTCTTTTTTAGGTCGTGCAAGTGCGTATAACCCCTT--------------------------------------------------------AAATTAA---------AATATTAATT--------------------------------------------------------------------------------------------------------------------------CTTGA-------------------------CTTTTTTTAASizeHit CountTotal NormTotal
No Reads
droKik1
TACTAAGCCA-----------------------------------------AA---AA-A-----------------------------------------------------------------------------------------------------------------------------------GCATCAA------------------------A--TTCAATTCGAAAAG--------------------T------------------------------------------TTTTCTGTGCTAGTTT--TTTCTAGGGTAACAAAA---------------------------------------------------------------------------------------------------CTG------------------------------------CATACTAAATTTA---------AAATGTAAAAAAATTGAAATTATTGGCAATTTCTTTTTGGCAATTTCAAC-AATTTT-AGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------------------------------------------------------------------------------------------------------------------------------------CCTC-AAAAA---------C--------------------------------AAAAA---A---------ATTTTTTTTTTTTTAATTTCGGCTAAACGTGG---------C-TAGAT-----------------------------------TGA-------------------------CT-CCGCTTTSizeHit CountTotal NormTotal
No Reads
droFic1
TGAATTTCGAT-G------A--------------------------------C---A-TCGAACAAATACTGT----------------------------------------------------------------------------------------------------------------------------AAATAGTAATACAATATATCTTTATCTTTAG----------------------------------------------------------------------------------------------------GT------------------------CTT----GATTTTTTTGGAG-----AATTTGC---------------------------AAG-TGACTACGAAAATGCATTACTA------------------------------------CAAACTGGATTTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAG-TTTCA------------------------------AATATT------------------------------ATTACTTCTA-----ATATGTGGCTTAAT-------------------T------------------TATATGAATACA------------------------------------------------------------------------GCCATAGGAGT---------A-A-------------------------------------------------------------------CCATTATATCSizeHit CountTotal NormTotal
No Reads
droEle1
CAAATTTAAAT-A------C------------------------------CAA---T-----------GCTGCTTTAC----------CT-------------------------CCTT--------------------------------------------------------------TCTTGAAAAACCATGAAGGT---------------------------------------------------------------------------------------------------------------TTACTT--ATA-AATAGTCCATTTCACTTCCGCTAGAAG---TTTTTTT----AC-----GT-----G---------------------------------------------------------------------------------------------------------------------------------------------------------------CTTAAAT-CGATGTCATGGATAG-------------------------------------------------------------AATTTGGGATAATATTTCTTTAATTAATAT----TTATATAATT----------------------------------------------GTAAATTAATAAATTATTCATAAATAAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTG-----TATAATATAGAGAA--------------------------------------------------------------------------------------------ACTGTGAAAAT---------C-A-----------------------------------ATATTGA-------------------------AT-TACCAGASizeHit CountTotal NormTotal
No Reads
droRho1
AATTTTTTTTC-TT--------------------------------------T---TAAAAT----ATTGTTATATTAATAATAT---------TT---TATTTTT--------------------------------------------------------------TATTCTTGTTTAAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT----TATTAT-----AT-TAATAATATGT---------------------------TAA-AATATTTGAAACTATTTTTATA------------------------------------TTAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA-----ATATTTGAAAATAT-------------------A------------------ACATATAAAACT---------TTTTAATGTTTTT------------------------------------------------------------------------------------------------AAAGATTATATTAAAATGTTCAATACTCATTTAATTGCGATTTAATATTATTAASizeHit CountTotal NormTotal
No Reads
droBia1
TACTTTGAATT-TTAAA-----------------------------------------AC-A----CTTT------------GTAAGTAAAAT--------------------------------------------------------------------------------------TGTTTTAAAAAGTCATACAAATAATTTTACAATGACTCATTACCTTTCCATTTTTGGTAGCAAAATAAATATTTTGTAAAAAACATTTCTCCTATATTTTG---------------------------------------------------------------------------------------------------------T---------------------------TAA-AATAAACGTT--------------------------------------TTAAGCTTTAAAGA-TAAAATTGCGAAATTTTAAACATAAAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACTAATTGTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------CAGGAACTTAAAACAC---------AACCGAATTT--------------------------------------------------------------------------------------------------------------------------CGAGA-------------------------GCATTGACGASizeHit CountTotal NormTotal
No Reads
droTak1
AATTTTAAAAT-T--------------------------------------AC---AATAAAATAAATTCTGTTTTAT----------AT-------------------------ATTT-----------------------TTCAA------------------------------------TTCCATAA--------------------------------------------------------------------------------------------------------------------------------------TTTATTTTTTTCACTTAC-----------------------------AT-----A---------------------------------------------------------------------------------------------------------------------------------------------GGTATTTTTAG-------ATCAAAT-CTAAGACAAGGTAAGAACATTTGTAACGAACAAAAAT---G----T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAATTATAAGACAATATTTT---------------------------------------------------------------------------------------------------------TTTTAAATTAACTTTAAAGTGGTATGCAGATATTTAAT----------------------------------TTA--------------------------AT-TTAATTTSizeHit CountTotal NormTotal
No Reads
droEug1
AAATTAAACTT-A--------------------------------------ATTGAAGCCAGAA--GA--CG---------------------------TATTT-----------TTTA--------------------------------------------------------------TATTCGGAAAA-------------------------------------------------------------------CACTG--------------------------------------TTTCTTATGTTTATTT--ATATTACAGTAACTATAATATATTCTATAGG---TTTACTT----AC-----AT-----T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCA-------------------CATTTATATGTT-------------------------------------------------------------------------------------------------------------------TAGCAATGCATATGTTTGCAGTGCACTTTTATTTAATTAATGTGTGTGAGTGTTAAT-----------------------------------------------------------------------------------------------------------------------------------------------------AGTGTGCTTAAATTTTTAAAAC---------T------------------------------------ATCTA---------ATCTATT------------------------------------------------TATTTTACATTT--------------CTGG--------------------------AA-ATAATTGSizeHit CountTotal NormTotal
No Reads
dm3
CAGTTTTTAAT-T--------------------------------------GT---AGTA-T----GGCCTAAATTTT----------AG-------------------------AATT-----------------------TCCAATTCAATGGCTCATTAAAGATATTTGTTAGCTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATTTAAG------------------------------------------------CAAAA----------TATTA--------------------------------------------------------------------------------------------------------------------ATCTATATGAAAGTAAA-TATCCCAAAGAG-TTTTAT--AA------------------------------------------------------------------------------------------------------------------------------------------TATA-GAAGG---------C--------------------------------AACAATTCGATTTAAGCG-----------------------------------------------------------ATA-------------------------------------------------TATATGTAAGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT--AA------------------------------------------------------------------------------------------------------------------------------------------TATA-GAAGG---------C--------------------------------AACAAT.....................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............T--------------------------------------GT---AGTA-T----GGCCTAAATTTT----------AG-------------------------AATT-----------------------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................AGTA-T----GGCCTAAATTTC----------TA-------------------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19140.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000
droSim2
TATATTTAACA-A------T------------------------------AAT---T--------------------------------------------------------------------------------------------------------AAAAATTTGTTTTTGTTTTGATTTAAGAAATTACGAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTGAT-TAGAGCTATGGTTTCCGTAATTGTGGTGCACTATAAA---GAGCGTAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTATGCATA----------------------------------------------------------------------------------------------------------TCTGTTTTTA-----AAATATGACTTCAT-------------------A------------------TTTAATGAGACA---------TTTGCAAGCAAAC------------------------------------------------------------------------------------------------ACAGAATATATATTCTTGA-------------------------TC-AGTTCAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................................................................................................TGTTTTTGTTTTGATTTAAGAAATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000000000
..............................................................................................................................................................................TGTTTTGATTTAAGAAATTACGAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000100000000
............................................................................................................................................................................TTTGTTTTGATTTAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15130.08100000001000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATATTCTTGA-------------------------TC-AGT....19200.05100000000001000000
droSec2
TATATTTAACA-A------T------------------------------AAT---T--------------------------------------------------------------------------------------------------------AAAAATTTGTTTTTGTTTTGATTTAAGAAATTACGAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTGAT-TAAAGCTATGGTTTCCGTAATTGTGGTGCACTATAAA---GAGCGTAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTATGCATA----------------------------------------------------------------------------------------------------------TCTGCTTTTA-----AAATATGACTTCAT-------------------A------------------TTTAATGAGACA---------TTTGCAAGCAAAC------------------------------------------------------------------------------------------------ACAGAATATATATTCTTGA-------------------------TC-AGTTCAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
TATCATCTTTG-TT--------------------------------------T---GGTTGAACGATTAA-------------------------AAAAAAAATGTTATATATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTTTGAATTTAAAAACCTAAGAACATGTATGT-----TTGTACACAATGTTTCCTTTAAT------------TTT-------CCTA------AAACTAAA-----ATTAAAATAAAAAACAAATTTTTTTT---TTTTTAAATACTTCCTTAAAATACAAAAAAAAACAAATGTTGTCTATTTCCTA---------T---------------------------------------------------------------------------------------------------------AA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTT------AAAA-AAAAAAT-TTA------------------------------------------------------------------------GTTA-----TAAAATAACTTCAT-------------------A------------------TTTTC--------------------CAAAAGGAGGAAG----------------------------------------------ATTTAATGTGC---------A-CACA---------------------TATCGAATAAGCACTGTA---------------TCAAATCAGAACATTGGGAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTC--------------------CAAAAGGAGGAAG----------------------------------------------ATTTAATGT...........................................................................................2611.00100100000000
..........................................................................................................................................................................................................................................................................................TGAATTTAAAAACCTAAGAACATGTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2620.50101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGAATAAGCACTGTA---------------TCAAATCA............26200.20404000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAAGCACTGTA---------------TCAAATCAGAA.........24190.05101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGAATAAGCACTGTA---------------TCAAATCAG...........27190.05100100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGAATAAGCACTGTA---------------TCAAATC.............25200.05100100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------------TATCGAATAAGCACTGTA---------------TCAAA...............24200.05101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA---------------------TATCGAATAAGCACTGTA---------------TCAAA...............26200.05101000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---------------------TATCGAATAAGCACTGTA---------------TCAAATC.............27200.05101000000000
droEre2
ACCTCAATCA------------------------------------------T---AATG-A----ATTCTTCTTCCACACATTT---------CT---TGTTTCA--------------------------------------------------------------TTTTCTCG--------------------------------------------------------------------------------------------------------------------------------------------------------------ATAACAGA------------------------------------------------------------------------------------T--------------------------------------TCTACCCCACCTACCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGATATACATATCTGTATAATATATTATATATCATAATCATCATTCGTCAATTATTTCAAATTTTTTG------------------GCATGTAGGAATT----------------------------------------------------------------------------------------------------------------------------ATCAATAATTTT-------------------------TT-CGTTTATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/18/2015 at 01:09 AM