ID:

dmo_1724

 Coordinate:

scaffold_6500:30744359-30744509 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.6 -9.4 -8.9 -8.7

Flybase annnotation

CDS [Dmoj\GI19094-cds]; exon [dmoj_GLEANR_403:2]; intron [Dmoj\GI19094-in]; Antisense to intron [Dmoj\GI18277-in]

No Repeatable elements found

mature
  1. dmo_1724  scaffold_6500:30744450-30744475 -
  2. scaffold_6500:30809362-30809387 +
star
  1. dmo_1724  scaffold_6500:30744376-30744401 -
  2. scaffold_6500:30809436-30809461 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TAACATGTAGATGTAGATGTGTTATAACTTCTGCTTTTAATCGATCTGCTTCTCCTTTATGAATAGTTATAGTTCGAAAAATGATAAACTAGCTAAATAATCATTTCGGTTGATGTATCCTTTTTAAATTTAATTTTGATTAACCGCTGCGAATCTTTTCTTGACACAGCACTTAAGTTATAATATTTATTGGTATTCTAGATTCTTCAACAACAAATGAATGAATATAAATTTCACTACTTTTTCACAAG
************************************************************************************................................................((..(((((((..((((.................))))..)))).)))..))******************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V041
embryo
 V049
head
 V056
head
....................................................................................TAAACTAGCTAAATAATCATTTCGGT............................................................................................................................................. 26 0 2 9.00 18 12 6 0 0 0
....................................................................................TAAACTAGCTAAATAATCATTTCGG.............................................................................................................................................. 25 0 2 4.50 9 7 0 2 0 0
...........................................................................................................................................................................................TATTGGTATTCTAGATTCTTCAACAAC..................................... 27 0 2 3.00 6 5 1 0 0 0
...........................................................................................................................................................................................TATTGGTATTCTAGATTCTTCAAC........................................ 24 0 2 1.50 3 0 3 0 0 0
.................................................................................................................................................................................................TATTCTAGATTCTTCAACAACAAATG................................ 26 0 2 1.50 3 3 0 0 0 0
..............................................................................................................................................................TCTTGACACAGCACTTAAGTTATAAT................................................................... 26 0 2 1.50 3 3 0 0 0 0
..............................................................................................................................................................TCTTGACACAGCACTTAAGTTATAATA.................................................................. 27 0 2 1.50 3 3 0 0 0 0
...................................................................................................................................................TGCGAATCTTTTCTTGACACAGCACT.............................................................................. 26 0 2 1.00 2 2 0 0 0 0
.....................................................................................AAACTAGCTAAATAATCATTTCGGT............................................................................................................................................. 25 0 2 1.00 2 1 1 0 0 0
.................................................................................TGATAAACTAGCTAAATAATCATTTCGG.............................................................................................................................................. 28 0 2 1.00 2 2 0 0 0 0
...................................................................................................................................................................................................TTCTAGATTCTTCAACAACAAATGAA.............................. 26 0 2 1.00 2 2 0 0 0 0
...................TGTTATAACTTCTGCTTTTAATCGATC............................................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0
........................TAACTTCTGCTTTTAATCGATCTGCTTC....................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0
......................TATAACTTCTGCTTTTAATCGATCTGCTT........................................................................................................................................................................................................ 29 0 1 1.00 1 1 0 0 0 0
....................................................................................................................................................................................................TCTAGATTCTTCAACAACAAATGA............................... 24 0 2 1.00 2 2 0 0 0 0
....................................................TCCTTTATGAATAGTTATAGTTCGA.............................................................................................................................................................................. 25 0 2 1.00 2 2 0 0 0 0
.................................................................................................................................................................................................TATTCTAGATTCTTCAACAACAAATGAAT............................. 29 0 2 1.00 2 2 0 0 0 0
..........................................................................................................................................................................................TTATTGGTATTCTAGATTCTTCAACA....................................... 26 0 2 1.00 2 1 1 0 0 0
...........................................................................................................................................................TATTCTTGACACAGCACTTAAGTTATAA.................................................................... 28 1 2 0.50 1 1 0 0 0 0
...............................................................................................................................................................................................GGTATTCTAGATTCTTCAACAACA.................................... 24 0 2 0.50 1 1 0 0 0 0
...........................................................................................................................................................................................TATTGGTATTCTAGATTCTTCAACC....................................... 25 1 2 0.50 1 1 0 0 0 0
............................................................................................................................................TAACCGCTGCGAATCTTTTCTTGACACA................................................................................... 28 0 2 0.50 1 1 0 0 0 0
.................................................................................TTCTAAACTAGCTAAATAATCATTTCGGC............................................................................................................................................. 29 3 2 0.50 1 0 1 0 0 0
.................................................................................................................................................................................................TATTCTAGATTCTTCAACAACAAATGA............................... 27 0 2 0.50 1 1 0 0 0 0
....................................................................................TGAACTAGCTAAATAATCATTTCGGT............................................................................................................................................. 26 1 2 0.50 1 0 1 0 0 0
...................................................................................ATAAACTAGCTAAATAATCATTTCGGT............................................................................................................................................. 27 0 2 0.50 1 1 0 0 0 0
............................................................................................................................................................................................ATTGGTATTCTAGATTCTTCAACA....................................... 24 0 2 0.50 1 1 0 0 0 0
.............................................................................................................TTGATGTATCCTTTTTAAATTTAATT.................................................................................................................... 26 0 2 0.50 1 1 0 0 0 0
...........................................................................................................................................................................................TATTGGTATTCTAGATTCTTCAACA....................................... 25 0 2 0.50 1 1 0 0 0 0
.....................................................................................AAACTAGCTAAATAATCATTTCGG.............................................................................................................................................. 24 0 2 0.50 1 1 0 0 0 0
.................................................TTCTCCTTTATGAATAGTTATAGTT................................................................................................................................................................................. 25 0 2 0.50 1 1 0 0 0 0
...................................................................................................................................................TTCGAATCTTTTCTTGACACAGCACC.............................................................................. 26 2 2 0.50 1 0 1 0 0 0
........................................TCGATCTGCTTCTCCTTTATGAATAG......................................................................................................................................................................................... 26 0 2 0.50 1 1 0 0 0 0
.................................................................................................................................................................................................TATTCTAGATTCTTCAACAACAAATGAA.............................. 28 0 2 0.50 1 1 0 0 0 0
..................................................................................................................GTATCCTTTTTAAATTTAATTTTGA................................................................................................................ 25 0 2 0.50 1 1 0 0 0 0
.................................................................................TGATAAACTAGCTAAATAATCATTTCGGT............................................................................................................................................. 29 0 2 0.50 1 1 0 0 0 0
........................................................................................................................................TGATTAACCGCTGCGAATCTTTTCTT......................................................................................... 26 0 2 0.50 1 1 0 0 0 0
........................................................................................................................................TGATTAACCGCTGCGAATCTTTTCT.......................................................................................... 25 0 2 0.50 1 1 0 0 0 0
...........................................................................................................................................................................................TATTGGTATTCTAGATTCTTCAACAA...................................... 26 0 2 0.50 1 1 0 0 0 0
....................................................................................TAAACTAGCTAAATAATCATTTCGGTTG........................................................................................................................................... 28 0 2 0.50 1 1 0 0 0 0
..............................................TGCTTCTCCTTTATGAATAGTTATAGTT................................................................................................................................................................................. 28 0 2 0.50 1 1 0 0 0 0
.............................................................................................................................................................TTCTTGACACAGCACTTAAGTTATAAT................................................................... 27 0 2 0.50 1 1 0 0 0 0
..............................................................................................................................................................TCTTGACACAGCACTTAAGTTATAA.................................................................... 25 0 2 0.50 1 1 0 0 0 0
........................................................................................................................................................ATCTTTTCTTGACACAGCACT.............................................................................. 21 0 2 0.50 1 0 1 0 0 0
..........................................................................................................................................................................................TTATTGGTATTCTAGATTCTTCAACAAC..................................... 28 0 2 0.50 1 1 0 0 0 0
...........................................................................................................................................................................................TGTTGGTATTCTAGATTCTTCAAC........................................ 24 1 2 0.50 1 0 1 0 0 0
.............................................................................................................................................................TTCTTGACACAGCACTTAAGTTATA..................................................................... 25 0 2 0.50 1 1 0 0 0 0
..............................................................................................................................................................TCTTGACACAGCACTTAAGTTA....................................................................... 22 0 2 0.50 1 1 0 0 0 0
..................................................................................................................................................................................................ATTCTAGATTCTTCAACAACAAATG................................ 25 0 2 0.50 1 1 0 0 0 0
.........................................................................................................................................................................................................................TGAATGAATATAAATTTCACTACTTT........ 26 0 2 0.50 1 0 1 0 0 0
.................................................................................................TAATCATTTCGGTTGATGTATCCTT................................................................................................................................. 25 0 2 0.50 1 1 0 0 0 0
............................................................................................................................................................................................ATTGGTATTCTAGATTCTTCAAC........................................ 23 0 2 0.50 1 1 0 0 0 0
........................................................................................................................................................................................................GATTCTTCAACAACAAATGAAT............................. 22 0 2 0.50 1 1 0 0 0 0
............................................................................................................................................TAACCGCTGCGAATCTTTTCTTG........................................................................................ 23 0 2 0.50 1 1 0 0 0 0
....................................................................................TAAACTAGCTAAATGATCATTTCGGT............................................................................................................................................. 26 1 2 0.50 1 1 0 0 0 0
.................................................................................................................................................................................................TATTCTAGATTCTTCAACAACA.................................... 22 0 2 0.50 1 1 0 0 0 0
.............................................................................................................................................................TTCTTGACACAGCACTTAAGTTATAA.................................................................... 26 0 2 0.50 1 1 0 0 0 0
..................................................................................................................................................................................................ATTCTAGATTCTTCAACAACAAATGAA.............................. 27 0 2 0.50 1 1 0 0 0 0
....................................................TCCTTTATGAATAGTTATAGTTCGAAAAA.......................................................................................................................................................................... 29 0 2 0.50 1 1 0 0 0 0
.........................................................................................................................................................................................................................TGAATGAATATAAATTTCACTACTTAAA...... 28 3 2 0.50 1 1 0 0 0 0
...................................................................................................................................................TGCGAATCTTTTCTTGACACAGCAC............................................................................... 25 0 2 0.50 1 1 0 0 0 0
...................................................................................................................................................TTCTAATCTTTTCTTGACACAGCACC.............................................................................. 26 3 2 0.50 1 0 1 0 0 0
........................................................................................................................................................ATATTGTCTTGACACAGCATT.............................................................................. 21 3 7 0.14 1 0 0 0 1 0
..........................................................................................AGCTAAATCGTCATTGCGG.............................................................................................................................................. 19 3 12 0.08 1 0 0 0 0 1
..................................................................................................................................TAATTTTGATTAACCCCCC...................................................................................................... 19 3 20 0.05 1 0 1 0 0 0

Anti-sense strand reads

ATTGTACATCTACATCTACACAATATTGAAGACGAAAATTAGCTAGACGAAGAGGAAATACTTATCAATATCAAGCTTTTTACTATTTGATCGATTTATTAGTAAAGCCAACTACATAGGAAAAATTTAAATTAAAACTAATTGGCGACGCTTAGAAAAGAACTGTGTCGTGAATTCAATATTATAAATAACCATAAGATCTAAGAAGTTGTTGTTTACTTACTTATATTTAAAGTGATGAAAAAGTGTTC
*******************************************************************................................................((..(((((((..((((.................))))..)))).)))..))************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V041
embryo
 V056
head
 V049
head
...............................................................................................................................................GGCGACGCTTAGAAAAGAACTGTGT................................................................................... 25 0 2 1.50 3 3 0 0 0 0
..TGTACATCTACATCTACACAATATT................................................................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0
..TGTACATCTACATCTACACAATA.................................................................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0
.........CTACATCTACACAATATTGAAGAC.......................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0
......................................................................................................................................................CTTCGAAAAGAACTGTCAC.................................................................................. 19 3 20 0.80 16 16 0 0 0 0
.......................................................................................................................................................TTAGAAAAGAACTGTGTCGTGAATT........................................................................... 25 0 2 0.50 1 1 0 0 0 0
.........................................................................AGCTTTTTACTATTTGATCGATT........................................................................................................................................................... 23 0 2 0.50 1 1 0 0 0 0
............................................................................................................................................................................AATTCAATATTATAAATAACCATA....................................................... 24 0 2 0.50 1 1 0 0 0 0
.............................................................................TTTTACTATTTGATCGATTTATTAGTA................................................................................................................................................... 27 0 2 0.50 1 1 0 0 0 0
.....................................................................ATCAAGCTTTTTACTATTTGATCGA............................................................................................................................................................. 25 0 2 0.50 1 1 0 0 0 0
............................................................................TTGTTACCATCTGATCGATTTA......................................................................................................................................................... 22 3 2 0.50 1 0 0 1 0 0
........................................................................................................................................................TAGAAAAGAACTGTGTCGTGAATTCA......................................................................... 26 0 2 0.50 1 1 0 0 0 0
.....................................................................................................GTAAAGCCAACTACATAGGAAAAA.............................................................................................................................. 24 0 2 0.50 1 1 0 0 0 0
........................................................................................................................................................................CGTGAATTCAATATTATAAATAACCATA....................................................... 28 0 2 0.50 1 0 1 0 0 0
.........................................................................................................................................................................GTGAATTCAATATTATAAATAACCATAA...................................................... 28 0 2 0.50 1 1 0 0 0 0
..................................................................................................TTAGTAAAGCCAACTACATAGGAAA................................................................................................................................ 25 0 2 0.50 1 1 0 0 0 0
........................................................................................................................................................................CGTGAATTCAATATTATAAATAACCATAA...................................................... 29 0 2 0.50 1 0 1 0 0 0
.................................................................................................................................................CGACGCTTAGAAAAGAACTGTGT................................................................................... 23 0 2 0.50 1 1 0 0 0 0
......................................................................TCAAGCTTTTTACTATTTGATCGA............................................................................................................................................................. 24 0 2 0.50 1 1 0 0 0 0
.............................................................................................................................................................................................AACCATAAGATCTAAGAAGTTGTT...................................... 24 0 2 0.50 1 1 0 0 0 0
......................................................................................................................................................................................TATAAATAACCATAAGATCTAAGAAG........................................... 26 0 2 0.50 1 1 0 0 0 0
...........................................................................................................................................................................GAATTCAATATTATAAATAACCATAA...................................................... 26 0 2 0.50 1 1 0 0 0 0
..................................................................................................................................................GACGCTTAGAAAAGAACTGTG.................................................................................... 21 0 2 0.50 1 1 0 0 0 0
...............................................CGAAGAGGAAATACTTATCAATATCA.................................................................................................................................................................................. 26 0 2 0.50 1 1 0 0 0 0
...............................................................................................................................TAAATTAAAACTAATTGGCGACGCT................................................................................................... 25 0 2 0.50 1 1 0 0 0 0
.....................................................................................................................................................GCTTCGAAAAGAACTGTC.................................................................................... 18 2 4 0.25 1 1 0 0 0 0
........................ATTGCAGACGAAATTTAGATA.............................................................................................................................................................................................................. 21 3 5 0.20 1 0 0 0 1 0
......................................................................................................................................................CTTCGAAAAGAACTGTGG................................................................................... 18 2 5 0.20 1 1 0 0 0 0
......................................................................................................................................................CTTCGAAAAGAACTGTCACG................................................................................. 20 3 9 0.11 1 1 0 0 0 0
...................GCAATAGTGAAGAGGAAAAT.................................................................................................................................................................................................................... 20 3 17 0.06 1 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6500:30744309-30744559 - dmo_1724 TAACATGT----------------------------------------------------------------------------------------AGATGTAGATGT-----------GTTA------TAACTTCTGCTTTTAATCGATCTGCTTCTCCTTTATGAAT-----AGTTATAGTTCG-----------------------------------------------------------------------------------------------------AAAAATGATAAACTAGCTAAATAATCATTTCGGTTGATGTATCCTTTTTAAATTTAATTTTGATTAACCGCTGCGAATCTTTTCTTGACACAGCACTT------------A-AGT-----------------------------------TATAATATTTATTGGTAT-------------------TCTAGATTC----------TTCAACAACAAATGAATGAATATAAATTTCACTACTTTTTCAC-----------AAG
droVir3 scaffold_12963:14271127-14271205 + TTATTTTAATAT--ATTTTTTTTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------------------TATAGATTC----------TTCAGCAACAAATGAATGAGTATAAATTCCACTACTTTTTTAC-----------AAG
droGri2 scaffold_15074:5312713-5312917 - TTAATTGGTTTT--GATT-----TG-ATGC-------------------------------------------------------------------------------AGGTTTCTTTGTTG------TTGTTCCTGCTTTTGAGCCA-CTGGTTTTACGTTACAGGT-----CGTT------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------G------------GATGATAATAAAGATATCACAT-GAATAG----------------TATATTGCTTGATAATT---------GC--TTGATCACTTGAGTTTTATATTGACACAGTGTT----------AACTACTGCAAATTACTGGAATGCCGAGCAATTATTCAACAAC-----------A--
droWil2 scf2_1100000004909:10387798-10387932 - TATATATA---------------------------------------------------------------------------------------CATATGCTAAGGCAATGTTTTTTTGATT------TTGATTTT---------------GTTT--T----TTTCTTTAAGCAAT----GCGTG-----------------------------------------------------------------------------------------------------AATAATGCAAGCTCAATAACACTGCAATTTGAGTTGGT-TGT-TTTTATGGATTTGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTGGTTGGC-------------C
dp5 Unknown_group_233:8682-8737 - TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGATTC----------TACAACAGCAGATGAATGAGTATAAATACCACTACTTTTTCAC-----------AAG
droPer2 scaffold_3511:1178-1268 + ATTTTTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAAACAATACTA------------A-AAC-----------------------------------TTTAAATTTTATAGTTAT-------------------TTCTAATATTTAAATTTTAAACAAAAAAAAATTAATAAATAAAAATT-----------------------------
droAna3 scaffold_13499:770472-770539 + TAATATTAATCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------------TACAGATAT----------TGCAACAGAAAATGAATGAATACAAATATCATTATTTGTTTAC-----------TAG
droBip1 scf7180000394922:4700-4930 - TGTCTTGCAAC----------------------------------------------------------------------------------------------------TTTCCTTTCCTT------TCATTTATCTTTCCAAAAAA-TTTATTTAAAGTTATTGCTTAATTAAT----GTGTGGATGGAGAAACTGGACTATAATCGTCCTTTCATTCTTTTTCTATTAAGATATATATATTCAAATATTTTATTAAAA----------AATACAAAACCAAAA-----------------AAAA--A-------------------------------------------------------------------------------------------------------------------------------------------TTTTT-------------------TTTAGATAT----------TACAATTGCAAATGAATGATCACCGATACCACTATATGTTCAC-----------AAC
droKik1 scf7180000302595:4828-4996 - ATGAATTAATTA--ATTAATTAATT-------------AAATAACTTTACCCCTAATTTAGAATTAAGTATACAATGCACAAATAAATAAATATATTTATGATAA-------------------------------------------------------------------------------------------------------------------------------AAAAATAAATCTTTAATAATTAAATTAATACCATATACCTAATAGAAGCTTAAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAA-TTTGTTTATTTTTTAT-----------AGG
droFic1 scf7180000454040:250741-250796 - TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGATAT----------TACAGCAGCAAATGAATGAATACAAATACCATTACTTGTTTAC-----------TAC
droEle1 scf7180000491238:575086-575236 + TTGTAAA-------------------------------------------------------------------------------------------------------TTCTATTTT------------GA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTT------------TTAAATTAATTTTG-AAAATTGCGCTTACGAACACAAATAATATA-------------------TTTGCTTGTCTCTTTTCCTATATAAAACTATAGATAT----------TGCAGCAGCAAATGAATGAGTACAAGTATCATTATTTGTTTAC-----------CAG
droRho1 scf7180000777283:29209-29368 + AAAATAAAAACTCAGATA-----AG-TTTCAATTGGCTTAG-----------------------------------------------------------------TGAATTTTTTTTTGTAATGTCTACTGTTTATATTTC---------------------------------------------------------------------------------------------------------------------------------------------------------TAAA---------------------------------------------------------------GATTTTTT------------TTAAATAAATCACTT-GTATTG----------------TATTATA-------------------TTTTGATGT-------------------ATTATTTTG----------TACTTGAAAAATTGCATTAATCAAAATTTCA--------------------------
droBia1 scf7180000302334:1147452-1147589 - ATGAAACATTTT--TTAATT---TACACTCGATTAGCTTAT-----------------TAA-------------------AATTATATACATATATATATGCTAT------------------------TAAATTTA---------------AATT--G----TTCCCCTGATCACT----TG-----------------------------------------------------------------------------------------------------AATAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATTCAAGTATTTTTACTGGAGTATAATGTACTAATTAA
droTak1 scf7180000415345:84009-84098 - TCTTTTTTATAA--AATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAATTCA-----------------------------------------------------------------------------------------------------AAAATTTATAAATATAATAAACAAGTATGCCTATTTTACTGCCTTGTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTTTAATTCC-----------TAT
droEug1 scf7180000408984:527324-527410 + CCTGAGTATTAA--TCTTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCTATATAAAACTTTAGATAT----------TACAGCAGCAAATGAATGAATACAAATACCATTATTTGTTTAC-----------CAG
dm3 chr4:657952-658008 + ACT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGATAT----------TGCAGCAACAAATGAATGAATACAAGTACCATTACTTGTTTAC-----------AAG
droSim2 4:468528-468584 + ACT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAGATAT----------TACAGCAACAAATGAATGAATACAAGTATCATTATTTGTTTAC-----------AAG
droSec2 scaffold_30:380583-380639 + ACT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAGATAT----------TACAGCAACAAATGAATGAATACAAGTATCATTATTTGTTTAC-----------AAG
droYak3 v2_chrUn_1390:681-758 + ATTTTTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAAACAATACTA------------A-AAC-----------------------------------TTTTAAATTTATAGTTAT-------------------TTCTAATAT----------TTTTATATAAAATAATTAAA---------------------AT-----------TAA
droEre2 scaffold_4512:613881-613937 + ACT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGATAT----------TACAGCAGCAAATGAATGAATACAAGTATCATTATTTGTTTAC-----------AAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
TAACATGT----------------------------------------------------------------------------------------AGATGTAGATGT-----------GTTA------TAACTTCTGCTTTTAATCGATCTGCTTCTCCTTTATGAAT-----AGTTATAGTTCG-----------------------------------------------------------------------------------------------------AAAAATGATAAACTAGCTAAATAATCATTTCGGTTGATGTATCCTTTTTAAATTTAATTTTGATTAACCGCTGCGAATCTTTTCTTGACACAGCACTT------------A-AGT-----------------------------------TATAATATTTATTGGTAT-------------------TCTAGATTC----------TTCAACAACAAATGAATGAATATAAATTTCACTACTTTTTCAC-----------AAGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......................................................................................................................................................................................................................................................................................................TAAACTAGCTAAATAATCATTTCGGT.....................................................................................................................................................................................................................................2629.00181200060
.......................................................................................................................................................................................................................................................................................................TAAACTAGCTAAATAATCATTTCGG......................................................................................................................................................................................................................................2524.509720000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGGTAT-------------------TCTAGATTC----------TTCAACAAC................................................2723.006500010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGGTAT-------------------TCTAGATTC----------TTCAAC...................................................2421.503000030
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT-------------------TCTAGATTC----------TTCAACAACAAATG...........................................2621.503300000
.................................................................................................................................................................................................................................................................................................................................................................................TCTTGACACAGCACTT------------A-AGT-----------------------------------TATAAT...........................................................................................................2621.503300000
.................................................................................................................................................................................................................................................................................................................................................................................TCTTGACACAGCACTT------------A-AGT-----------------------------------TATAATA..........................................................................................................2721.503300000
......................................................................................................................................................................................................................................................................................................................................................................TGCGAATCTTTTCTTGACACAGCACT......................................................................................................................................................................2621.002200000
........................................................................................................................................................................................................................................................................................................AAACTAGCTAAATAATCATTTCGGT.....................................................................................................................................................................................................................................2521.002100010
....................................................................................................................................................................................................................................................................................................TGATAAACTAGCTAAATAATCATTTCGG......................................................................................................................................................................................................................................2821.002200000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------------TCTAGATTC----------TTCAACAACAAATGAA.........................................2621.002200000
...........................................................................................................T-----------GTTA------TAACTTCTGCTTTTAATCGATC...............................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
.................................................................................................................................TAACTTCTGCTTTTAATCGATCTGCTTC.........................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
.........................................................................................................................TA------TAACTTCTGCTTTTAATCGATCTGCTT..........................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAGATTC----------TTCAACAACAAATGA..........................................2421.002200000
.............................................................................................................................................................TCCTTTATGAAT-----AGTTATAGTTCG-----------------------------------------------------------------------------------------------------A......................................................................................................................................................................................................................................................................2521.002200000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT-------------------TCTAGATTC----------TTCAACAACAAATGAAT........................................2921.002200000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTGGTAT-------------------TCTAGATTC----------TTCAACA..................................................2621.002100010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAT-------------------TCTAGATTC----------TTCAACAACA...............................................2420.501100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGGTAT-------------------TCTAGATTC----------TTCAACC..................................................2520.501100000
...............................................................................................................................................................................................................................................................................................................................................................TAACCGCTGCGAATCTTTTCTTGACACA...........................................................................................................................................................................2820.501100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT-------------------TCTAGATTC----------TTCAACAACAAATGA..........................................2720.501100000
......................................................................................................................................................................................................................................................................................................ATAAACTAGCTAAATAATCATTTCGGT.....................................................................................................................................................................................................................................2720.501100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGTAT-------------------TCTAGATTC----------TTCAACA..................................................2420.501100000
................................................................................................................................................................................................................................................................................................................................TTGATGTATCCTTTTTAAATTTAATT............................................................................................................................................................................................................2620.501100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGGTAT-------------------TCTAGATTC----------TTCAACA..................................................2520.501100000
........................................................................................................................................................................................................................................................................................................AAACTAGCTAAATAATCATTTCGG......................................................................................................................................................................................................................................2420.501100000
..........................................................................................................................................................TTCTCCTTTATGAAT-----AGTTATAGTT..............................................................................................................................................................................................................................................................................................................................................................................2520.501100000
.................................................................................................................................................TCGATCTGCTTCTCCTTTATGAAT-----AG......................................................................................................................................................................................................................................................................................................................................................................................2620.501100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT-------------------TCTAGATTC----------TTCAACAACAAATGAA.........................................2820.501100000
.....................................................................................................................................................................................................................................................................................................................................GTATCCTTTTTAAATTTAATTTTGA........................................................................................................................................................................................................2520.501100000
....................................................................................................................................................................................................................................................................................................TGATAAACTAGCTAAATAATCATTTCGGT.....................................................................................................................................................................................................................................2920.501100000
...........................................................................................................................................................................................................................................................................................................................................................TGATTAACCGCTGCGAATCTTTTCTT.................................................................................................................................................................................2620.501100000
...........................................................................................................................................................................................................................................................................................................................................................TGATTAACCGCTGCGAATCTTTTCT..................................................................................................................................................................................2520.501100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGGTAT-------------------TCTAGATTC----------TTCAACAA.................................................2620.501100000
.......................................................................................................................................................................................................................................................................................................TAAACTAGCTAAATAATCATTTCGGTTG...................................................................................................................................................................................................................................2820.501100000
.......................................................................................................................................................TGCTTCTCCTTTATGAAT-----AGTTATAGTT..............................................................................................................................................................................................................................................................................................................................................................................2820.501100000
................................................................................................................................................................................................................................................................................................................................................................................TTCTTGACACAGCACTT------------A-AGT-----------------------------------TATAAT...........................................................................................................2720.501100000
.................................................................................................................................................................................................................................................................................................................................................................................TCTTGACACAGCACTT------------A-AGT-----------------------------------TATAA............................................................................................................2520.501100000
...........................................................................................................................................................................................................................................................................................................................................................................ATCTTTTCTTGACACAGCACT......................................................................................................................................................................2120.501000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTGGTAT-------------------TCTAGATTC----------TTCAACAAC................................................2820.501100000
................................................................................................................................................................................................................................................................................................................................................................................TTCTTGACACAGCACTT------------A-AGT-----------------------------------TATA.............................................................................................................2520.501100000
.................................................................................................................................................................................................................................................................................................................................................................................TCTTGACACAGCACTT------------A-AGT-----------------------------------TA...............................................................................................................2220.501100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT-------------------TCTAGATTC----------TTCAACAACAAATG...........................................2520.501100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATGAATATAAATTTCACTACTTT...................2620.501000010
....................................................................................................................................................................................................................................................................................................................TAATCATTTCGGTTGATGTATCCTT.........................................................................................................................................................................................................................2520.501100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGTAT-------------------TCTAGATTC----------TTCAAC...................................................2320.501100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTC----------TTCAACAACAAATGAAT........................................2220.501100000
...............................................................................................................................................................................................................................................................................................................................................................TAACCGCTGCGAATCTTTTCTTG................................................................................................................................................................................2320.501100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT-------------------TCTAGATTC----------TTCAACAACA...............................................2220.501100000
................................................................................................................................................................................................................................................................................................................................................................................TTCTTGACACAGCACTT------------A-AGT-----------------------------------TATAA............................................................................................................2620.501100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT-------------------TCTAGATTC----------TTCAACAACAAATGAA.........................................2720.501100000
.............................................................................................................................................................TCCTTTATGAAT-----AGTTATAGTTCG-----------------------------------------------------------------------------------------------------AAAAA..................................................................................................................................................................................................................................................................2920.501100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATGAATATAAATTTCACTACTTAAA.................2820.501100000
......................................................................................................................................................................................................................................................................................................................................................................TGCGAATCTTTTCTTGACACAGCAC.......................................................................................................................................................................2520.501100000
droVir3
TTATTTTAATAT--ATTTTTTTTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------------------TATAGATTC----------TTCAGCAACAAATGAATGAGTATAAATTCCACTACTTTTTTAC-----------AAGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAAATGAATGAGTATAAATTCC...........................2611.001000000000000000000000000000010000000000000000000000000000000000
droGri2
TTAATTGGTTTT--GATT-----TG-ATGC-------------------------------------------------------------------------------AGGTTTCTTTGTTG------TTGTTCCTGCTTTTGAGCCA-CTGGTTTTACGTTACAGGT-----CGTT------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------G------------GATGATAATAAAGATATCACAT-GAATAG----------------TATATTGCTTGATAATT---------GC--TTGATCACTTGAGTTTTATATTGACACAGTGTT----------AACTACTGCAAATTACTGGAATGCCGAGCAATTATTCAACAAC-----------A--SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TATATATA---------------------------------------------------------------------------------------CATATGCTAAGGCAATGTTTTTTTGATT------TTGATTTT---------------GTTT--T----TTTCTTTAAGCAAT----GCGTG-----------------------------------------------------------------------------------------------------AATAATGCAAGCTCAATAACACTGCAATTTGAGTTGGT-TGT-TTTTATGGATTTGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTGGTTGGC-------------CSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGATTC----------TACAACAGCAGATGAATGAGTATAAATACCACTACTTTTTCAC-----------AAGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
ATTTTTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAAACAATACTA------------A-AAC-----------------------------------TTTAAATTTTATAGTTAT-------------------TTCTAATATTTAAATTTTAAACAAAAAAAAATTAATAAATAAAAATT-----------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
TAATATTAATCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------------TACAGATAT----------TGCAACAGAAAATGAATGAATACAAATATCATTATTTGTTTAC-----------TAGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TGTCTTGCAAC----------------------------------------------------------------------------------------------------TTTCCTTTCCTT------TCATTTATCTTTCCAAAAAA-TTTATTTAAAGTTATTGCTTAATTAAT----GTGTGGATGGAGAAACTGGACTATAATCGTCCTTTCATTCTTTTTCTATTAAGATATATATATTCAAATATTTTATTAAAA----------AATACAAAACCAAAA-----------------AAAA--A-------------------------------------------------------------------------------------------------------------------------------------------TTTTT-------------------TTTAGATAT----------TACAATTGCAAATGAATGATCACCGATACCACTATATGTTCAC-----------AACSizeHit CountTotal NormTotal
No Reads
droKik1
ATGAATTAATTA--ATTAATTAATT-------------AAATAACTTTACCCCTAATTTAGAATTAAGTATACAATGCACAAATAAATAAATATATTTATGATAA-------------------------------------------------------------------------------------------------------------------------------AAAAATAAATCTTTAATAATTAAATTAATACCATATACCTAATAGAAGCTTAAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAA-TTTGTTTATTTTTTAT-----------AGGSizeHit CountTotal NormTotal
No Reads
droFic1
TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGATAT----------TACAGCAGCAAATGAATGAATACAAATACCATTACTTGTTTAC-----------TACSizeHit CountTotal NormTotal
No Reads
droEle1
TTGTAAA-------------------------------------------------------------------------------------------------------TTCTATTTT------------GA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTT------------TTAAATTAATTTTG-AAAATTGCGCTTACGAACACAAATAATATA-------------------TTTGCTTGTCTCTTTTCCTATATAAAACTATAGATAT----------TGCAGCAGCAAATGAATGAGTACAAGTATCATTATTTGTTTAC-----------CAGSizeHit CountTotal NormTotal
No Reads
droRho1
AAAATAAAAACTCAGATA-----AG-TTTCAATTGGCTTAG-----------------------------------------------------------------TGAATTTTTTTTTGTAATGTCTACTGTTTATATTTC---------------------------------------------------------------------------------------------------------------------------------------------------------TAAA---------------------------------------------------------------GATTTTTT------------TTAAATAAATCACTT-GTATTG----------------TATTATA-------------------TTTTGATGT-------------------ATTATTTTG----------TACTTGAAAAATTGCATTAATCAAAATTTCA--------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
ATGAAACATTTT--TTAATT---TACACTCGATTAGCTTAT-----------------TAA-------------------AATTATATACATATATATATGCTAT------------------------TAAATTTA---------------AATT--G----TTCCCCTGATCACT----TG-----------------------------------------------------------------------------------------------------AATAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATTCAAGTATTTTTACTGGAGTATAATGTACTAATTAASizeHit CountTotal NormTotal
No Reads
droTak1
TCTTTTTTATAA--AATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAATTCA-----------------------------------------------------------------------------------------------------AAAATTTATAAATATAATAAACAAGTATGCCTATTTTACTGCCTTGTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTTTAATTCC-----------TATSizeHit CountTotal NormTotal
No Reads
droEug1
CCTGAGTATTAA--TCTTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCTATATAAAACTTTAGATAT----------TACAGCAGCAAATGAATGAATACAAATACCATTATTTGTTTAC-----------CAGSizeHit CountTotal NormTotal
No Reads
dm3
ACT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGATAT----------TGCAGCAACAAATGAATGAATACAAGTACCATTACTTGTTTAC-----------AAGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT----------TGCAGCAACAAATGAATG.......................................2121.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAAATGAATGAATA...................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAATACAAGTACCATTACT.....................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGATAT----------TGCAGCAACAAAT............................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------TGCAGCAACAAATGAATGAA.....................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAATGAATGAATACAAGT..............................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATGAATACAAGTACCATT........................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGAATGAATACAAGTAC............................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACAAGTACCATTACTTGT..................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATGAATGAATACAAGT..............................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATAT----------TGCAGCAACAAATG...........................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAT----------TGCAGCAACAAATGA..........................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAT----------TGCAGCAACAAATGA..........................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT----------TGCAGCAACAAATGAATG.......................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
droSim2
ACT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAGATAT----------TACAGCAACAAATGAATGAATACAAGTATCATTATTTGTTTAC-----------AAGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
ACT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAGATAT----------TACAGCAACAAATGAATGAATACAAGTATCATTATTTGTTTAC-----------AAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATACAAGTATCATTATT.....................2020.5011000
droYak3
ATTTTTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAAACAATACTA------------A-AAC-----------------------------------TTTTAAATTTATAGTTAT-------------------TTCTAATAT----------TTTTATATAAAATAATTAAA---------------------AT-----------TAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
ACT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGATAT----------TACAGCAGCAAATGAATGAATACAAGTATCATTATTTGTTTAC-----------AAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/18/2015 at 01:09 AM