dmo_1722

CDS [Dmoj\GI19094-cds]; exon [dmoj_GLEANR_403:7]; intron [Dmoj\GI19094-in]; Antisense to intron [Dmoj\GI18277-in]

Name	Class	Family	Strand
Homo6	DNA	hAT-Pegasus	+

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## TCTATATTAATATTGTTTTGTATTATTGTATTACGTTCATCAAAGCCTAAATAGTTCCCCGGGTCACCTAGTCAATAATATACATATATACTTAATGGGGTCTGCCACGCCTCCTTCTGCCTGTTATATACATTTCATCAAAACCATTAATACACAACAGCATAAAAGTATCGAATAATGAATGAAAACTTATTTATATAGGTGCCCACGGCGGAACCAACTCGACTTTTTTCATTCATGAACCCATTAGC ************************************************.........(((((.((((........((((....))))........))))..))).))....(((.(((.((((..............................)))))))...))).........((((((((....))))))))....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body
............................TATTACGTTCATCAAAGCCTAAATAGA....................................................................................................................................................................................................	27	1	1	1.00	1	1
...........................................................................................TTAATGGGGTCTGCCACGCCTCCTT.......................................................................................................................................	25	0	5	0.20	1	1
...........................................................................................TTAATGGGGTCTGCCACGCCTCCTTCTG....................................................................................................................................	28	0	5	0.20	1	1
...........................................................................................TTAATGGGGTCTGCCACGCCTC..........................................................................................................................................	22	0	6	0.17	1	1
...................................................................................ATATATACTTAATGGGGTCTG...................................................................................................................................................	21	0	9	0.11	1	1
...............................................................................................................TCCTTCTGCCTGTTATATACA.......................................................................................................................	21	0	20	0.05	1	1

AGATATAATTATAACAAAACATAATAACATAATGCAAGTAGTTTCGGATTTATCAAGGGGCCCAGTGGATCAGTTATTATATGTATATATGAATTACCCCAGACGGTGCGGAGGAAGACGGACAATATATGTAAAGTAGTTTTGGTAATTATGTGTTGTCGTATTTTCATAGCTTATTACTTACTTTTGAATAAATATATCCACGGGTGCCGCCTTGGTTGAGCTGAAAAAAGTAAGTACTTGGGTAATCG ************************************************.........(((((.((((........((((....))))........))))..))).))....(((.(((.((((..............................)))))))...))).........((((((((....))))))))....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	V110 male body	M060 embryo
...........................................................................ATTATATGTATATATGAATTACCCCA......................................................................................................................................................	26	0	1	1.00	1	1	0	0
.............................................................................................TTACCCCAGACGGTGCGGAGGAAGAC....................................................................................................................................	26	0	6	0.17	1	1	0	0
.................AACATAATAACATAATGCAAGTAGTT................................................................................................................................................................................................................	26	0	8	0.13	1	0	1	0
.......................ATAACATAATGCAAGTAGTTT...............................................................................................................................................................................................................	21	0	10	0.10	1	0	1	0
...................................AAGTAGTTTGCGATTTAT......................................................................................................................................................................................................	18	2	17	0.06	1	0	0	1
................................................................................................................GGAAGACGGACAATATATGTAAAGT..................................................................................................................	25	0	20	0.05	1	1	0	0

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6500:30736982-30737232 -	dmo_1722	TC--------TAT--ATTAATATTGTTTTGTATTATTGTATTACGTTCATCAAAGCCTAA-----------------------A------------T------------AGTTCCCCGGGTCA-CCTAGTCAATAATATACATAT-----ATACTTAATGGGGTCTGCCACGCCTCCTTCTGCCTGTTATATACAT-----TTCATCAAAACC--ATTAATAC-----ACAACAGCATAAA--------------------------------AGTATCGAATA--ATGAA-------T---------------GA---------A---------------------------------AA--------------------------------------CTTATTTATATAGGTGCCCACGGCGGAACCAA---CTCGACTTTTTTCATTCATGA-------------------------------------------ACCC-ATTA------------GC
droVir3	scaffold_13049:23629415-23629630 +		----------------------------------------------------------------------------------------------------------------------------GCCGATCAAGCATATA----T-----ATACTTTATGGGGTCGGAGATGCTTCCTTCTGCCTGTTACATACAT-----TTGCACAAAAAC--ATTA-TACCCCTT--TTCA----A------------------------------T--GGGTTCAAGGTATAA--T-------AATATTAATATCGAGGGATATACTAGG-G----AACTAGTTTTCATAGAAGCAGACAGACG-GA-----------------------------CAGATTGGG-----------ATGT------------GG---------------------------CTAAACCAACTTCTTCTGCGTCTTTC-------------------AT-ATTA------------GC
droGri2	scaffold_6495:355-509 +		TTAT------------TTAATGATGTTTTG-GTTATTATATTTGCTTTATTGTAATTTAT-----------------------T------------TTATTTGAATATCGACTCGGCTGTTGACCCTGATTAAAATAATA----C-----AAACTTTATGGGGTCGGAGATGCTTCCTTTTACCTGTTACGTACAT-----TTGCACAAAACC--ATTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2	scf2_1100000004251:3812-3977 -		----------------------------------------------------------------------------------------------------------------------------CCTGATCAAAAATATA----T-----ATACTTTATGGGGTCGGAGAAGCTTCCTTCTGCCTGTTACATACAT-----TTTGGCGACTTT--AATA---CCT-----ATGGGTGT----------------------------------------ATAGTATAATTAA-------T---------------G-----------CT---------T--------------------TGAGCAATTATTTATTCATCTTCTATCCACGGTAACTTGTTTTT--------------------------------------------C----AGTA------------------------AC-------------------AT-A----GT---------GC
dp5	Unknown_group_50:21322-21463 +		-----------------------------------------------------------------------------------------------------------------------------CTGATCAAGAATATATATAT-----ATACTTTATGGGGTCGGAAACGCTTCCTTCTGGACGATACACACATCCATTTTCACCAGAATTCTAATA-TACCCCAA--CACT----C----------------------------ATTTTGAGTATCGGGTATAA--A-------AAG--------------------------T-------------------------------TGA-------------------------------------------------------------------------------------------------------------------------------------------CCAATTTACT---------TA
droPer2	scaffold_11:2298183-2298263 -		-----------------------------------------------------------------------------------------------------------------------------CTGATCAAGAATATACATAT-----ATACTTTAAGGGGTCGAAAACGCTTCCTTCTGCGTGTTACACGCATCTACTTTCATC--------ACAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3	scaffold_12916:15583101-15583246 +		----------------------------------------------------------------------------------------------------------------------------CCTGATCAAGAATATACATAT-----ATACTTTATAGGGTCGGAGATGTCTCCTTCACTGCGTTGCACACTT-----TTGACCAAAATT--ATAA-TACCCTCTGCAAGGGTATAAA--------------------------------------------------------AAT--------------------------TACAAAGAAATTA-----------------------------------------------------------------------------------------------------------------CAA--------------------------TGA-----------------CAATTTACCAATCATGTGCC
droBip1	scf7180000393421:1155-1327 +		----------------------------------------------------------------------------------------------------------------------------CCTGATCAAGAATATA----T-----ATACTTTATAGGGTCGGCGATGCCTCCTTCACTGCGTTGCACACTT-----TTGACCAAAATT--ATAA-TACTCTCTGCAAGGGTATAAA--------------------------------------------------------AATGG------------GA---------A---------------------------------AA-----------------------------CCTGTTGTT-----------ATGAGCTTACTAGAAAGTCAAAAAGTAGACTTTTTTCACTCGCAA--------------------------GGA-----------------CTAT--------------CC
droKik1	scf7180000301841:999-1138 -		----------------------------------------------------------------------------------------------------------------------------GCTGATTAAAAATATA----T-----ATACTTTATAGGGTCGGAAACGTCTCCTTCACTGCGTTGCAAACTT-----CTGACTGAAATT--ATAA-TACCCTGC--AAGGGTATAAA----------------------------------AAAGGTGAGTAA--A-------A---------------------------------------------------------------------------------------------AGATTGTTCTTAAATAAATAGA------------------------------------------------------------------------------------------AGCC------------TA
droFic1	scf7180000454040:249501-249600 -		CAAAATGTCATAT--ATTTG---------------------------------------------------------------------------------------------------------TTGGATATAAATAAATTTAG-----ATTTCTTTTAAGGTCCCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCCGGAGCCAA---CAAGACTGTTCTCCTTTATGA-------------------------------------------ATCC-ATTG------------GC
droEle1	scf7180000491104:1994575-1994717 -		----------------------------------------------------------------------------------------------------------------------------CCTGATCAAGAATATA----C-----ATACTTTATAAGGTCGGAAACGCTTCCTTCTACCTGTTATATACCT-----TTCAACCATTGC--AATA-TACACTTTT-TTCT----A------------------------------TACGAGTACCCGGTATAA--A-------AGG--------------ACAAG-------C-------------------------------------------------------------------CTCG---------------------------------------------------------TGAA--------------TTCATC---------------------GC-GTTA------------TT
droRho1	scf7180000765982:91604-91768 +		TTAT--------------------------------GGCAT-----------------------TA----CGGACATGCTTATA-----------------------TCAACTCAGGAGGTGATCCTGATCAAGAATATA----T-----ATACTTTATAGGGTCGGAGATGTCTCCTTCACTGCGTTGCACACTT-----TTGACCAAAATT--ATAA-TACCCTCTGCAAGGGTATAAAAATG--------------------------------TCGACCG--ATCAA-------T---------------GG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---------AC
droBia1	scf7180000301495:917633-917812 -		GT--------TTTCTGTCTAT---------------TGATT-----------------------TACAAACGAACATGGCTAAA-----------------------TCGACTCGTCAAGTGACGCTGATCAAGAATATATATAC-----ATACTTTATGGGGTCGGAAACTCCTCCTTCACTGCGTTGCAAACTT-----TTGACTAAAATC--ATTA-TACCCTCTGCAAGGGTATAAA--------------------------------------------------------AAT--------------ATAAA-----G-T-------------------------------TGCG----------------------------------------------------------------------------------------------GAA-------------------------------------------------AA---------AA
droTak1	scf7180000415288:2172-2292 +		----------------------------------------------------------------------------------------------------------------------------CCTGATCAAGAATATA----T-----ATACTTTATGGGGTCGGAAACGCTTCCTTTTAGCTGTTACATACTT-----TGCA-TGAATAC--AATA-TACACT-------GGTAAAAAAACG---------------------------------------------------------------------------------CA-------------------------------------------------------------------TAG---------------------------------------------------------TGAAATCAAAT----------------------------------AT------------TTTTTAT
droEug1	scf7180000409650:46126-46324 +		----------------------------------------------------------------------------------------------------------------------------CCTGATCAAGAATATA----T-----ATACTTTATAGGGTCGGAAACGCTTCCTTCTATCTGTTACATACGT-----TTCAACGAATCT--AGTA-TACCCTTT--TACT----C------------------------------TACGAGTAACGGGTGTAA--A-------AAAGTCAGACTGGACAAAC-AATTAGT-G----AAAAAATTTGAATAACA--AGGCA-AGG-AG-----------------------------CCTGTTGAA-----------GTGA------------AC---------------------------CAAAACAGA----------------------------------GTTC-AACA------------AA
dm3	chr2R:21139834-21140057 +		TA--------TAT--ATTTATCAAGTTATATATT-TTGTATCAAGATCA--AAAGCCGAGACGATC----TGGACGTGTCCGTCCCTATGAACGTCG------------AGATCTCAAGATCT-CAAGATCAATAATATATGTATATACAATACTTTATATGGTCGGAAAAGCTTCCTTCTGCCTGTTACATACTT-----TTCAACGAATCT--AGTA-TACACTTT--TACC----C------------------------------TACGAGTAACGACTATAA--C-------AAG--------------AG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGA---------AC
droSim2	x:525655-525796 -		----------------------------------------------------------------------------------------------------------------------------CCTGATCAATAATATATAAAA-----ATACCTTATATGGTCGGAACAGCTTCCTTCTGTCTGTTACATACAT-----TTCAACGAATCG--AGTA-TACCCCTT--TACT----C------------------------------TACGTGTAACGAGTA--AGTAA-------T---------------CC---------A---------------------------------AA--------------------------------------CT-------------------------------------------------------GAA-ACAACT----------------------------------CC------------ACTTTCT
droSec2	scaffold_82:68304-68445 +		-----------------------------------------------------------------------------------------------------------------------------CTGATCAAGAATATATGTAT-----ATACTTTATGTAGTCGGAAACGCTTAGTTCTGCCTGTTACATACTT-----TTCAATGAATCT--AGTA-AACTCTTT--TACA----C------------------------------TACGAGTAAGGTGGATTA--A-------A---------------------------------------------------------------------------------------------AACCTGTT-------ATA----------------------------------------------------------------TAGATCAC-------------------GT-A---GGA---------AC
droYak3	v2_chrUn_6986:5079-5246 +		----------------------------------------------------------------------------------------------------------------------------CCTGATCAAGAATATA----T-----ATACTTTATATGGTCGGAAACGCTTCCTTCTGCCTGTTACATACTT-----TTCAACGAATCT--AGTA-TACCCTTT--CACT----C------------------------------TACTAGTAACGGGTATAA--T-------AATAA-AAT----------------------------------------------------------------------------------------------------ATATTGGAGTTCACTTAGGAA------------------------------------------------------CGACTTTAGTTGTATAAATCCAATTT------------GC
droEre2	scaffold_4770:3489553-3489727 +		----------------------------------------------------------------------------------------------------------------------------CCTGATCAATAATATACATAT-----ATACTTTATATGGTCGGAAACGTTTCCTTCTGCCTGTAACAAACTT-----TTTACAAACATT--AAAT----------------TTAAAAAATGTCTACATTTTAATGCAAATTTTTTTTAGAGTATTGCGCCAGA--AACATTAAGAG--------------ATATG------------------------------------------------------------------------------------------------------------------------------CCACTTAAAA-------------------------------------------ATCCGATTAAGA---------TC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

TC--------TAT--ATTAATATTGTTTTGTATTATTGTATTACGTTCATCAAAGCCTAA-----------------------A------------T------------AGTTCCCCGGGTCA-CCTAGTCAATAATATACATAT-----ATACTTAATGGGGTCTGCCACGCCTCCTTCTGCCTGTTATATACAT-----TTCATCAAAACC--ATTAATAC-----ACAACAGCATAAA--------------------------------AGTATCGAATA--ATGAA-------T---------------GA---------A---------------------------------AA--------------------------------------CTTATTTATATAGGTGCCCACGGCGGAACCAA---CTCGACTTTTTTCATTCATGA-------------------------------------------ACCC-ATTA------------GC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
......................................TATTACGTTCATCAAAGCCTAA-----------------------A------------T------------AGA.........................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................TTAATGGGGTCTGCCACGCCTCCTT......................................................................................................................................................................................................................................................................................................................................................	25	5	0.20	1	1	0	0	0	0	0
..........................................................................................................................................................TTAATGGGGTCTGCCACGCCTCCTTCTG...................................................................................................................................................................................................................................................................................................................................................	28	5	0.20	1	1	0	0	0	0	0
..........................................................................................................................................................TTAATGGGGTCTGCCACGCCTC.........................................................................................................................................................................................................................................................................................................................................................	22	6	0.17	1	1	0	0	0	0	0
.............................................................................................................................................ATAT-----ATACTTAATGGGGTCTG..................................................................................................................................................................................................................................................................................................................................................................	21	9	0.11	1	1	0	0	0	0	0
..............................................................................................................................................................................TCCTTCTGCCTGTTATATACA......................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0

droVir3

----------------------------------------------------------------------------------------------------------------------------GCCGATCAAGCATATA----T-----ATACTTTATGGGGTCGGAGATGCTTCCTTCTGCCTGTTACATACAT-----TTGCACAAAAAC--ATTA-TACCCCTT--TTCA----A------------------------------T--GGGTTCAAGGTATAA--T-------AATATTAATATCGAGGGATATACTAGG-G----AACTAGTTTTCATAGAAGCAGACAGACG-GA-----------------------------CAGATTGGG-----------ATGT------------GG---------------------------CTAAACCAACTTCTTCTGCGTCTTTC-------------------AT-ATTA------------GC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...............................................................................................................................................................................................TACAT-----TTGCACAAAAAC--ATTA-TACCCC.......................................................................................................................................................................................................................................................................................................	27	2	1.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................TAATATCGAGGGATATACTAG......................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................TACAT-----TTGCACAAAAAC--ATTA-TACCCCT......................................................................................................................................................................................................................................................................................................	28	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................ATACAT-----TTGCACAAAAAC--ATTA-TACCC........................................................................................................................................................................................................................................................................................................	27	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................TACAT-----TTGCACAAAAAC--ATTA-TACC.........................................................................................................................................................................................................................................................................................................	25	12	0.25	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................TCAAGCATATA----T-----ATACTTTATGGGGTC....................................................................................................................................................................................................................................................................................................................................................................	27	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................CAAGCATATA----T-----ATACTTTATGGGGTC....................................................................................................................................................................................................................................................................................................................................................................	26	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................TACAT-----TTGCACAAAAAC--ATTA-TACCC........................................................................................................................................................................................................................................................................................................	26	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................CATACAT-----TTGCACAAAAAC--ATT...............................................................................................................................................................................................................................................................................................................	22	9	0.11	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................TATGGGGTCGGAGATGCTTCC........................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................TATGGGGTCGGAGATGCTTCCTTCT....................................................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................TCGGAGATGCTTCCTTCTGCCTGT..............................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................TTATGGGGTCGGAGATGCTTC.........................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................TACAT-----TTGCACAAAAAC--ATTA-TAC..........................................................................................................................................................................................................................................................................................................	24	14	0.07	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................GTTACATACAT-----TTGCACAAAAA.....................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................TCCTTCTGCCTGTTACATACAT-----................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................A----T-----ATACTTTATGGGGTCGGAGATGCT...........................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................TACAT-----TTGCACAAAAAC--ATT...............................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................T-----ATACTTTATGGGGTCGGAGAT..............................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................TGGGGTCGGAGATGCTTCC........................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................CTGCCTGTTACATACAT-----TTGCA...........................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................TCGGAGATGCTTCCTTCTGCCTGTT.............................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................TTTATGGGGTCGGAGATGCTTCC........................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

TTAT------------TTAATGATGTTTTG-GTTATTATATTTGCTTTATTGTAATTTAT-----------------------T------------TTATTTGAATATCGACTCGGCTGTTGACCCTGATTAAAATAATA----C-----AAACTTTATGGGGTCGGAGATGCTTCCTTTTACCTGTTACGTACAT-----TTGCACAAAACC--ATTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

----------------------------------------------------------------------------------------------------------------------------CCTGATCAAAAATATA----T-----ATACTTTATGGGGTCGGAGAAGCTTCCTTCTGCCTGTTACATACAT-----TTTGGCGACTTT--AATA---CCT-----ATGGGTGT----------------------------------------ATAGTATAATTAA-------T---------------G-----------CT---------T--------------------TGAGCAATTATTTATTCATCTTCTATCCACGGTAACTTGTTTTT--------------------------------------------C----AGTA------------------------AC-------------------AT-A----GT---------GC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.........................................................................................................................................................................................GTTACATACAT-----TTTGGCGACTTT--A.................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	0	2	0

dp5

-----------------------------------------------------------------------------------------------------------------------------CTGATCAAGAATATATATAT-----ATACTTTATGGGGTCGGAAACGCTTCCTTCTGGACGATACACACATCCATTTTCACCAGAATTCTAATA-TACCCCAA--CACT----C----------------------------ATTTTGAGTATCGGGTATAA--A-------AAG--------------------------T-------------------------------TGA-------------------------------------------------------------------------------------------------------------------------------------------CCAATTTACT---------TA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..........................................................................................................................................................................................................TCACCAGAATTCTAATA-TACCCCAA--CAC................................................................................................................................................................................................................................................................................................	28	2	1.50	3	0	0	0	0	0	0	0	3	0	0
..............................................................................................................................................................................................................................................................................TTGAGTATCGGGTATAA--A-------AAG--------------------------T-------------------------------TGA-------------------------------------------------------------------------------------------------------------------------------------------C....................	26	4	1.25	5	0	0	0	0	0	0	0	3	2	0
.........................................................................................................................................................................................................................................T----C----------------------------ATTTTGAGTATCGGGTATAA--A-------AAG--------------------------...................................................................................................................................................................................................	26	20	0.65	13	0	3	0	0	0	0	0	8	2	0
...................................................................................................................................................................TCGGAAACGCTTCCTTCTGGACGATA............................................................................................................................................................................................................................................................................................................................................	26	2	0.50	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................CGGAAACGCTTCCTTCTGGACGATA............................................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................TCACCAGAATTCTAATA-TACCCCAA--CA.................................................................................................................................................................................................................................................................................................	27	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................TAT-----ATACTTTATGGGGTCGG..................................................................................................................................................................................................................................................................................................................................................................	20	20	0.50	10	0	0	0	0	0	0	0	0	10	0
.............................................................................................................................................................................TTCCTTCTGGACGATACACACATCC...................................................................................................................................................................................................................................................................................................................................	25	5	0.40	2	0	1	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTGAGTATCGGGTATAA--A-------AAG--------------------------T-------------------------------TG.................................................................................................................................................................	24	4	0.25	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................CGGAAACGCTTCCTTCTGGACGA..............................................................................................................................................................................................................................................................................................................................................	23	4	0.25	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................TGAGTATCGGGTATAA--A-------AAG--------------------------T-------------------------------TGA-------------------------------------------------------------------------------------------------------------------------------------------C....................	25	4	0.25	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................C----------------------------ATTTTGAGTATCGGGTATAA--A-------................................................................................................................................................................................................................................	22	20	0.20	4	0	0	0	0	0	0	0	4	0	0
.................................................................................................................................................................................TTCTGGACGATACACACATCC...................................................................................................................................................................................................................................................................................................................................	21	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................TTCCTTCTGGACGATACACACATCCA..................................................................................................................................................................................................................................................................................................................................	26	5	0.20	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTGAGTATCGGGTATAA--A-------AAG--------------------------T-------------------------------...................................................................................................................................................................	22	20	0.15	3	0	1	0	0	0	0	0	2	0	0
...........................................................................................................................................................................................TACACACATCCATTTTCACCAGAA......................................................................................................................................................................................................................................................................................................................	24	7	0.14	1	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................................TTCCTTCTGGACGATACACACAT.....................................................................................................................................................................................................................................................................................................................................	23	7	0.14	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................GTCGGAAACGCTTCCTTCTGGACG...............................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................AT-----ATACTTTATGGGGTCGGAA................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	2	0	0
.........................................................................................................................................................................................................................................T----C----------------------------ATTTTGAGTATCGGGTATAA--A-------AAG--------------------------T-------------------------------...................................................................................................................................................................	27	20	0.10	2	0	0	0	0	0	0	0	0	2	0
...............................................................................................................................................................GGGGTCGGAAACGCTTCCTTCTGG..................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................TCGGAAACGCTTCCTTCTGGA.................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................AT-----ATACTTTATGGGGTCGGAAACGC............................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................TGGGGTCGGAAACGCTTCCTTCTGGACG...............................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	1	0	0	0
...................................................................................................................................................................TCGGAAACGCTTCCTTCTGGAC................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	1	0
......................................................................................................................................................................GAAACGCTTCCTTCTGGAC................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................TGGGGTCGGAAACGCTTCCTTCTGG..................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................TAT-----ATACTTTATGGGGTCGGAAAC..............................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................TGGGGTCGGAAACGCTTCCTTCTG...................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

-----------------------------------------------------------------------------------------------------------------------------CTGATCAAGAATATACATAT-----ATACTTTAAGGGGTCGAAAACGCTTCCTTCTGCGTGTTACACGCATCTACTTTCATC--------ACAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droAna3

----------------------------------------------------------------------------------------------------------------------------CCTGATCAAGAATATACATAT-----ATACTTTATAGGGTCGGAGATGTCTCCTTCACTGCGTTGCACACTT-----TTGACCAAAATT--ATAA-TACCCTCTGCAAGGGTATAAA--------------------------------------------------------AAT--------------------------TACAAAGAAATTA-----------------------------------------------------------------------------------------------------------------CAA--------------------------TGA-----------------CAATTTACCAATCATGTGCC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..........................................................................................................................................................TTTATAGGGTCGGAGATGTCTCC........................................................................................................................................................................................................................................................................................................................................................	23	20	0.15	3	0	3	0	0	0	0
..........................................................................................................................................................TTTATAGGGTCGGAGATGTCTC.........................................................................................................................................................................................................................................................................................................................................................	22	20	0.15	3	0	0	3	0	0	0
..............................................................................................................................TGATCAAGAATATACATAT-----ATACTTTATA.........................................................................................................................................................................................................................................................................................................................................................................	29	16	0.13	2	0	2	0	0	0	0
.................................................................................................................................TCAAGAATATACATAT-----ATACTTTATA.........................................................................................................................................................................................................................................................................................................................................................................	26	17	0.12	2	0	2	0	0	0	0
..............................................................................................................................TGATCAAGAATATACATAT-----ATACT..............................................................................................................................................................................................................................................................................................................................................................................	24	18	0.11	2	0	2	0	0	0	0
...........................................................................................................................................................................GTCTCCTTCACTGCGTTGCACACTT-----T...............................................................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	2	0	0	0	0
..............................................................................................................................TGATCAAGAATATACATAT-----ATACTTTA...........................................................................................................................................................................................................................................................................................................................................................................	27	16	0.06	1	0	1	0	0	0	0
............................................................................................................................CCTGATCAAGAATATACATAT-----ATACTT.............................................................................................................................................................................................................................................................................................................................................................................	27	18	0.06	1	0	1	0	0	0	0
..................................................................................................................................CAAGAATATACATAT-----ATACTTTATA.........................................................................................................................................................................................................................................................................................................................................................................	25	18	0.06	1	0	1	0	0	0	0
.........................................................................................................................................ATACATAT-----ATACTTTATAGGGTCGGA.................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
......................................................................................................................................................ATACTTTATAGGGTCGGAGATGTC...........................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................T--------------------------TACAAAGAAATTA-----------------------------------------------------------------------------------------------------------------CAA--------------------------TGA-----------------CC..................	22	20	0.05	1	0	0	1	0	0	0
.................................................................................................................................................................................................CTT-----TTGACCAAAATT--ATAA-TACCCTCTG....................................................................................................................................................................................................................................................................................................	28	20	0.05	1	1	0	0	0	0	0
................................................................................................................................................................................CTTCACTGCGTTGCACACT......................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
........................................................................................................................................................................GATGTCTCCTTCACTGCGTTGCACACTT-----................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	1	0	0	0	0	0

droBip1

----------------------------------------------------------------------------------------------------------------------------CCTGATCAAGAATATA----T-----ATACTTTATAGGGTCGGCGATGCCTCCTTCACTGCGTTGCACACTT-----TTGACCAAAATT--ATAA-TACTCTCTGCAAGGGTATAAA--------------------------------------------------------AATGG------------GA---------A---------------------------------AA-----------------------------CCTGTTGTT-----------ATGAGCTTACTAGAAAGTCAAAAAGTAGACTTTTTTCACTCGCAA--------------------------GGA-----------------CTAT--------------CC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

----------------------------------------------------------------------------------------------------------------------------GCTGATTAAAAATATA----T-----ATACTTTATAGGGTCGGAAACGTCTCCTTCACTGCGTTGCAAACTT-----CTGACTGAAATT--ATAA-TACCCTGC--AAGGGTATAAA----------------------------------AAAGGTGAGTAA--A-------A---------------------------------------------------------------------------------------------AGATTGTTCTTAAATAAATAGA------------------------------------------------------------------------------------------AGCC------------TA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CAAAATGTCATAT--ATTTG---------------------------------------------------------------------------------------------------------TTGGATATAAATAAATTTAG-----ATTTCTTTTAAGGTCCCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCCGGAGCCAA---CAAGACTGTTCTCCTTTATGA-------------------------------------------ATCC-ATTG------------GC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

----------------------------------------------------------------------------------------------------------------------------CCTGATCAAGAATATA----C-----ATACTTTATAAGGTCGGAAACGCTTCCTTCTACCTGTTATATACCT-----TTCAACCATTGC--AATA-TACACTTTT-TTCT----A------------------------------TACGAGTACCCGGTATAA--A-------AGG--------------ACAAG-------C-------------------------------------------------------------------CTCG---------------------------------------------------------TGAA--------------TTCATC---------------------GC-GTTA------------TT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TTAT--------------------------------GGCAT-----------------------TA----CGGACATGCTTATA-----------------------TCAACTCAGGAGGTGATCCTGATCAAGAATATA----T-----ATACTTTATAGGGTCGGAGATGTCTCCTTCACTGCGTTGCACACTT-----TTGACCAAAATT--ATAA-TACCCTCTGCAAGGGTATAAAAATG--------------------------------TCGACCG--ATCAA-------T---------------GG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---------AC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GT--------TTTCTGTCTAT---------------TGATT-----------------------TACAAACGAACATGGCTAAA-----------------------TCGACTCGTCAAGTGACGCTGATCAAGAATATATATAC-----ATACTTTATGGGGTCGGAAACTCCTCCTTCACTGCGTTGCAAACTT-----TTGACTAAAATC--ATTA-TACCCTCTGCAAGGGTATAAA--------------------------------------------------------AAT--------------ATAAA-----G-T-------------------------------TGCG----------------------------------------------------------------------------------------------GAA-------------------------------------------------AA---------AA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

----------------------------------------------------------------------------------------------------------------------------CCTGATCAAGAATATA----T-----ATACTTTATGGGGTCGGAAACGCTTCCTTTTAGCTGTTACATACTT-----TGCA-TGAATAC--AATA-TACACT-------GGTAAAAAAACG---------------------------------------------------------------------------------CA-------------------------------------------------------------------TAG---------------------------------------------------------TGAAATCAAAT----------------------------------AT------------TTTTTAT	Size	Hit Count	Total Norm	Total
No Reads

droEug1

----------------------------------------------------------------------------------------------------------------------------CCTGATCAAGAATATA----T-----ATACTTTATAGGGTCGGAAACGCTTCCTTCTATCTGTTACATACGT-----TTCAACGAATCT--AGTA-TACCCTTT--TACT----C------------------------------TACGAGTAACGGGTGTAA--A-------AAAGTCAGACTGGACAAAC-AATTAGT-G----AAAAAATTTGAATAACA--AGGCA-AGG-AG-----------------------------CCTGTTGAA-----------GTGA------------AC---------------------------CAAAACAGA----------------------------------GTTC-AACA------------AA	Size	Hit Count	Total Norm	Total
No Reads

dm3

TA--------TAT--ATTTATCAAGTTATATATT-TTGTATCAAGATCA--AAAGCCGAGACGATC----TGGACGTGTCCGTCCCTATGAACGTCG------------AGATCTCAAGATCT-CAAGATCAATAATATATGTATATACAATACTTTATATGGTCGGAAAAGCTTCCTTCTGCCTGTTACATACTT-----TTCAACGAATCT--AGTA-TACACTTT--TACC----C------------------------------TACGAGTAACGACTATAA--C-------AAG--------------AG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGA---------AC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...........................................................................................................................................................TTATATGGTCGGAAAAGCTTCCTTC.....................................................................................................................................................................................................................................................................................................................................................	25	3	441.00	1323	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	14	0	2	0	1	0	1	0	10	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	58	78	8	9	28	9	41	78	22	4	2	19	9	37	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	9	1	0	1	0	28	0	0	0	0	0	7	131	4	0	2	5	0	0	0	0	0	0	0	0	3	7	0	9	0	13	7	30	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	28	0	0	0	0	20	0	1	0	1	0	0	0	0	0	0	20	195	47	0	0	0	0	0	0	0	0	0	0	0	0	0	0	79	52	86	59	0	0	0	0	0	0
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...........................................................................................................................................................TTATATGGTCGGAAAAGCT...........................................................................................................................................................................................................................................................................................................................................................	19	7	0.29	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................AACGAATCT--AGTA-TACAC........................................................................................................................................................................................................................................................................................................	18	7	0.29	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................CTTCTGCCTGTTACATACTT-----TTCAAC..........................................................................................................................................................................................................................................................................................................................	26	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................GCTTCCTTCTGCCTGTTACATACT......................................................................................................................................................................................................................................................................................................................................	24	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................TATGAACGTCG------------AGATCTCAAGA.................................................................................................................................................................................................................................................................................................................................................................................................................	22	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

----------------------------------------------------------------------------------------------------------------------------CCTGATCAATAATATATAAAA-----ATACCTTATATGGTCGGAACAGCTTCCTTCTGTCTGTTACATACAT-----TTCAACGAATCG--AGTA-TACCCCTT--TACT----C------------------------------TACGTGTAACGAGTA--AGTAA-------T---------------CC---------A---------------------------------AA--------------------------------------CT-------------------------------------------------------GAA-ACAACT----------------------------------CC------------ACTTTCT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...................................................................................................................................................................................................T-----TTCAACGAATCG--AGT...............................................................................................................................................................................................................................................................................................................	16	5	0.40	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................................................TCCTTCTGTCTGTTACATA........................................................................................................................................................................................................................................................................................................................................	19	14	0.21	3	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	0	0
.............................................................................................................................................................................TTCCTTCTGTCTGTTACATA........................................................................................................................................................................................................................................................................................................................................	20	13	0.08	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................TTCTGTCTGTTACATA........................................................................................................................................................................................................................................................................................................................................	16	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

-----------------------------------------------------------------------------------------------------------------------------CTGATCAAGAATATATGTAT-----ATACTTTATGTAGTCGGAAACGCTTAGTTCTGCCTGTTACATACTT-----TTCAATGAATCT--AGTA-AACTCTTT--TACA----C------------------------------TACGAGTAAGGTGGATTA--A-------A---------------------------------------------------------------------------------------------AACCTGTT-------ATA----------------------------------------------------------------TAGATCAC-------------------GT-A---GGA---------AC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

----------------------------------------------------------------------------------------------------------------------------CCTGATCAAGAATATA----T-----ATACTTTATATGGTCGGAAACGCTTCCTTCTGCCTGTTACATACTT-----TTCAACGAATCT--AGTA-TACCCTTT--CACT----C------------------------------TACTAGTAACGGGTATAA--T-------AATAA-AAT----------------------------------------------------------------------------------------------------ATATTGGAGTTCACTTAGGAA------------------------------------------------------CGACTTTAGTTGTATAAATCCAATTT------------GC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.............................................................................................................................................................................TTCCTTCTGCCTGTTACATACTT-----................................................................................................................................................................................................................................................................................................................................	23	20	1.25	25	0	25	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................TCGGAAACGCTTCCTTCTGCC.................................................................................................................................................................................................................................................................................................................................................	21	20	0.15	3	0	0	3	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................T-----TTCAACGAATCT--AGTA-TACCCTTT--C..................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................GCTTCCTTCTGCCTGTTAC...........................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................CTTCCTTCTGCCTGTTACATAC.......................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0

droEre2

----------------------------------------------------------------------------------------------------------------------------CCTGATCAATAATATACATAT-----ATACTTTATATGGTCGGAAACGTTTCCTTCTGCCTGTAACAAACTT-----TTTACAAACATT--AAAT----------------TTAAAAAATGTCTACATTTTAATGCAAATTTTTTTTAGAGTATTGCGCCAGA--AACATTAAGAG--------------ATATG------------------------------------------------------------------------------------------------------------------------------CCACTTAAAA-------------------------------------------ATCCGATTAAGA---------TC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
......................................................................................................................................AATATACATAT-----ATACTTTATATGGTCGG..................................................................................................................................................................................................................................................................................................................................................................	28	8	0.25	2	0	0	0	0	0	0	2
.......................................................................................................................................................................AAACGTTTCCTTCTGCCTGT..............................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0	0
.............................................................................................................................................................ATATGGTCGGAAACGTTTCCTTCTGCCTG...............................................................................................................................................................................................................................................................................................................................................	29	20	0.05	1	1	0	0	0	0	0	0

dmo_1722

scaffold_6500:30737032-30737182 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-11.9	-11.8	-11.8