ID:

dmo_1719

 Coordinate:

scaffold_6500:30514478-30514628 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dmoj\GI18274-cds]; exon [dmoj_GLEANR_3084:5]; intron [Dmoj\GI18274-in]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+
AT_richLow_complexityLow_complexity+
Homo6DNAhAT-Pegasus-

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CATTGTTTTTTTATTGGGAACATTTTTGTTTACGAAAGACTTTATAAATGGTGAGTGGTTAGTGATTATTGAAACCATGCAGATTATTAAGAAGATAAATATTAAAATAATATATTATAAATAAATTTAAATAATTCTTAAAGTAAAGAAAAGAGAAAAAGTAAAAAAAAAGTAAGAAAGCTCTAGTCGAGACTGCTCGACTACGAGATCCCCTGAACCCTTCGCGCAATAGCTTTTTCTATAATTTTTCG
**************************************************.((.((((((............)))))).)).....(((((((..(((((......((((....))))......))))).....)))))))..........((((.........................)))).((((((....))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V110
male body		 M060
embryo
.......TTTTTATTGGGAACATTTTTGTT............................................................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0
..........TTATTGGGAACATTTTTGTT............................................................................................................................................................................................................................. 20 0 1 1.00 1 0 1 0
..........................................................................................................................................................................................................ACGAGATCCCCTGAACCCTTCGCG......................... 24 0 7 0.14 1 1 0 0
..........................................AATATATGGTGAGTGGTT............................................................................................................................................................................................... 18 2 14 0.07 1 0 0 1
.....................................................................................................................................................AAGGAGCAAAAGTAAAAAAAAA................................................................................ 22 2 19 0.05 1 0 1 0
.............................................................................................................................................................................................AGACTGCTCGACTACGAGATCCCC...................................... 24 0 20 0.05 1 0 0 1
.............................................................................................................................................................................................................AGATCCCCTGAGCCCTTCGCG......................... 21 1 20 0.05 1 1 0 0
..............................................................................................................................................................................................GACTGCTCGACTACGAGATCCCC...................................... 23 0 20 0.05 1 0 0 1
....................................................GGGCGGTTAGTGGTTATT..................................................................................................................................................................................... 18 3 20 0.05 1 0 1 0

Anti-sense strand reads

GTAACAAAAAAATAACCCTTGTAAAAACAAATGCTTTCTGAAATATTTACCACTCACCAATCACTAATAACTTTGGTACGTCTAATAATTCTTCTATTTATAATTTTATTATATAATATTTATTTAAATTTATTAAGAATTTCATTTCTTTTCTCTTTTTCATTTTTTTTTCATTCTTTCGAGATCAGCTCTGACGAGCTGATGCTCTAGGGGACTTGGGAAGCGCGTTATCGAAAAAGATATTAAAAAGC
**************************************************.((.((((((............)))))).)).....(((((((..(((((......((((....))))......))))).....)))))))..........((((.........................)))).((((((....))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body		 V056
head
.........AAATAATCCGTGTAAAAACAAA............................................................................................................................................................................................................................ 22 2 3 0.33 1 1 0 0 0
.......................................................................................................................................................................TTTTCATTCTTTCGAGATCAGCTC............................................................ 24 0 18 0.22 4 1 2 0 1
........................................................................................................................................................................TTTCATTCTTTCGAGATCAGCTC............................................................ 23 0 20 0.20 4 3 1 0 0
...........................................................................................................................................................................................................GCTCTAGGGGACTTGGGAAGCG.......................... 22 0 9 0.11 1 0 0 1 0
.....................................................................................................................................................................TTTTTTCATTCTTTCGAGATCAGCTC............................................................ 26 0 11 0.09 1 0 1 0 0
....................................................................................................................................................................TTTTTTTCAATCTTTCGAGATCAGCT............................................................. 26 1 11 0.09 1 1 0 0 0
......................................................................................................................................................................TTTTTCATTCTTTCGAGATCAGCTC............................................................ 25 0 18 0.06 1 1 0 0 0
......................................................................................................................................................................TTTTTCATTCTTTCGAGATCAGCT............................................................. 24 0 18 0.06 1 1 0 0 0
........................................................................................................................................................................TTTCATTCTTTCGAGATCAGCT............................................................. 22 0 20 0.05 1 1 0 0 0
.......................................................................................................................................................................TTTTCATTCTTTCGAGATCAGCGC............................................................ 24 1 20 0.05 1 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6500:30514428-30514678 + dmo_1719 CATTGTTTTTTTATTGGGAACATTTTTGTTTACGAAAGACTTT-----ATAAATGGTG-------------------AGTGGTTAGTGATTATTGAAACCATGCAG-----------------------------------AT--------------------------------------------------T-ATTA----------------------------------------------------------------------------AGAAGATAAATATTAA-------------AATAAT------------------------------------------------------AT-------------------------------------------------------------------------------------------ATTATA---AAT--------------------------------------------AAA----------------------TT---------------TAAATAATTCTTAAAGTAAAG--AAAAG-----------------------------------------------------------------------------------------AGAAAAAGTAAAAAAAAAGTAAGAAA-------------------------------------------------------------------------------------------------GCT-----CT--AGTCGAGACTGCTCGACTACGAGATCCCCTGAA------------------------------------CCCTTCGCGCAATAGCTTTTTCTATAATTTTTCG
droVir3 scaffold_12963:12622309-12622520 - TTTTAATTAAC------A---TTTTTCGTTAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAATTA---------------AACAACTAGCAATTATTTTCTGAGTAATAACCCTGCGAATGACGACTGTATTCTATAAATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAATACCC---------------------ATTTATTTAAATTTATTTAAAACCATTTAAATAACCATCAACTAAATCCT-----------AAGG-------------CTAATAAGTAAGAG----------GTT-----TT--AGTCGGGAGCTCCCGACTAGGGGATACCCTGAA------------------------------------CCCT------------------------------
droGri2 scaffold_15112:347417-347618 - GTTTTCTTTTA--CAATT-------ATATATACAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATATGATTATATATAGGGAATTGTAAGTCATTGTGTCATTTCAGTTTATTAGCATAC--------------------------------------------------TT------------------------------------------------------AA-------------------------------------------------------------------------------------------TACGCAATTATCAGGGAGAAGTGCTAAACAATGATCTGTTGTAAT-----------TTT-T----------------------------------------------------------------------------------------AAAACAAATAAA-------------------------------------------------------------------AAGTAACAAGACT-------------------------------------------------------------------------------------------------GCT-----TT--AGTCGAGTGAGTTCGACTACGATATTCCCTGGA------------------------------------C---------------------------------
droWil2 scf2_1100000004909:11193725-11193935 - TTTTGTTTTTT--ATG-G-------------------------TTTT---------TG-------------------TTTTATTTGTGATTGTCGAAA------------------------------------------GATA---------------------------------------------------ATAT----------------------------------------------------------------------------AGT-------------AGATATATATACAAATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA-TTAAGTCGCCCTATATATATAT-ATTTCACAACATAAGTAAAGAA-----------------------------AAACT---------------------------------------AAC-------------------------------------------ATAAATGAAGTAAGTA--------------------------------------------------------------------------------------------------------------AGTCGTCT--CTCCGACTTCAATATACCATGCACCATGTTTCCATGTTTCCTTTCCGATAGCATTGAAATTCG------------------------------
dp5 XR_group8:5628114-5628266 + AAGATATATACAAAAACAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAC---AACAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAACAAACAAACAAAACAAA-------------------------AAACAAAAGTACTGTACCTTCTTAGCGAA--AAAAACACC---------------------ACACAACTGTACTCAATTCCTGCCCATTAGATGACCTTCATATAGAACCT------------------------------------------------------------------------------------------------------------------------------------------------------------ATAATCCTCTG
droPer2 scaffold_38:54847-55021 - TGAAAACCCGT---------------------------------------------------------------------------------------------CG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTATCGAAAGATATATACAAAAACAAAAA-------------------------------------------------------------------------------------------ACAACA-----------------------------------------------------------------------------------------------------------------------AAAAAAAACAAACAAACAAAACAAA-------------------------AAACAAAAGTACTGTACCTTCTTAGCGAAAAAAAAACACC---------------------ACACAACTGTACTCAATTCCTGCCCATTAGATGACCTTCATATAGAACCT------------------------------------------------------------------------------------------------------------------------------------------------------------ATAATCCTCTG
droAna3 scaffold_10752:2442-2595 + CATTCATTTTGTATAAAGCA--------------------------------------TACATTTTTCACAA----------------------------------------------TAAATGTATAGCAAAAA----G----------------------AGCGATTAATAAAAGCCAGGCTAACG--ATCT---------------------------------------------------------------------------------GGACAAAATATAAAAA-------------AAAAATATATAACGGAAAAATAAAAATTA-------------------------------------------------------------ATTTTTATACAAA-------------------------------------------------------------A--------------------------------------------AAA-AA------------------------------------TA-AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAA------------------------------
droBip1 scf7180000395818:45986-46225 + AAGATTTTTAATTTAAAA------------------ATATTTT-----CTATATGTTG-------------------GC--------------------------------------------------------------------------------------------------------------------------------------------TGCACCAGTTTTTTGTGTTAATTCTTCTTA---ACATGCACCCCCTCACAAAATAA-----------------------------AAAAATTTTTTATAAAAA---------AATAACTAGTTTT------------------------TGGATTAAAAAAATTTCGATAAAACAAT---------------------------------------------------------------------------------------------------------TTTTTGAAAAAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACATTTTTAAAGCAAAGAATTTAAGGCACCAAAAAATGG----------GTT-----CTACATCCGATCT-C-TT----TCCAGAACTCCCGCA------------------------------------CTCT------------------------------
droKik1 scf7180000302610:901470-901639 + CAGTAGATATTTGTTGAA---ATATTTGTAAAT----------------------------------------------------------G--------------------------------------AAATG----AAATGAAATAGTTAAATAATTAAAGGAAT-------------------------TGAATA----------------------------------------------------------------------------AAT-------------AAATAAATAAATAAAGA----------------------------------------------------------------------------------------------------------------------------------------------AAAA--------------A--------------------------------------------AAAT-AA-----AAAAATAAATAAATTAAATAAATAAATAGGCAAATA-----------------AATAA-----------------------A-------------------------AAATAA-----------------------------------------AT----------------------------------------------------------------------------------------------------------------------------------------AAATAAATAATTAA---------------------------------------------TAAA------------------------------
droFic1 scf7180000453495:172111-172270 - TATTAAAAACA----GTT-------------------------TCTTTAAAAAAAAAAAAGGATTAGTGTTAAGTTAAATAATACATTATAAGAAATAAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAAAAT-------------AATAAT------------------------------------------------------AA-------------------------------------------------------------------------------------------AATACA---AATAAAAAGAAATGTAAAATAA------------------------------------------------------------------------------------------ATAATAATAATAATAA------------AATACA-------------------------------------------------------------------------AATAAAAAGA-------------------------------------------------------------------------------------------------------------------------------AATGTAAAA---------------------------------------------TTAA------------------------------
droEle1 scf7180000490638:1606-1751 - AGGATATATAAATAAG-T-------------------------TATT---------TA-------------------ATTAATTAATAAATAAATAA-----------------------------------------------------------------ACCAAT-------------------------T-AATA----------------------------------------------------------------------------AAT-------------AAATAAATAGATAAATAAA------------------------------------------------------AA-------------------------------------------------------------------------------------------AAT----------------------------------------------------------AA-----AAAAATATATAAAT-AAATAAATAAATAAGCAAATAA-----------------------------A--------------A-------------------------AAATAA-------------------------------------------ATA-AATAAATAAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGT------------------------------
droRho1 scf7180000777251:281835-281965 + GTTGTCAATCA-------------------------------------------------------CTTTTG-----------------------AAACC---AGAAATCTTTGACAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAT------------------------------------------------------AA--------------------------------------------------------------------------------------ACCATATTTTC------------AAACCTTAATTAA------------------------------------------------------------------------------------------ATAACAAAAATAGTAAGA-----------------------------------------------------------------------------------------AACAAGAAAGAAC-------------------------------------------------------------------------------------------------GCT-----AT--AGTCGAGTG-CCTCGACTATTAGATAC--------------------------------------------CC------------------------------
droBia1 scf7180000297172:3169-3322 + TGCAAATGACA--AGGTT-------AGG------------------------------------------------------------GTTATTTAATCCA---AA-----------------------------------AT--------------------------------------------------T-ACTAAATCATGATTATTTAAAAAATATTAAAAATCAAAACTTCTACTTGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCAAAGCAGAC--AAAAA-----------------------------------------------------------------------------------------CGAAAAA--------------------------------------------------------------------------------------------GAAACCAAAAAAAGATGAAGACCTGGTGCAGTCT--AATTGAGTA----------------------------------------------------------------------------------------------
droTak1 scf7180000413969:47852-48030 + ATTTTCGTTTC--TGAAT--------------------AACTT-----TTAAA-------------------------------AGTGA-------------------CTTTTTACAGT-AATGTGTAACATATTACAAATTTA---------------------------AAAAGGAAAAGTTAAAGGAATCT---------------------------------------------------------------------------------C------------------------------------------AAGG---------GCTATACAGTTTA------------------------AAGTTTTCAAGAAAATCGTTAGAGCCGT---------------------------------------------------------------------------------------------------------TTTTG-------------------------------------------------------------------AGA--AAAAT-----------------------------------------------------------------------------------------AAAAAAAGCAAAAAAAATTTAAAAAA------------------------------------------------------------------------------------------------------------------------------------C---------------------------------------------CTTT------------------------------
droEug1 scf7180000409063:93083-93202 + ATCAAAAATAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATTA-------------------------------------------------------------AATTATATGCAAA-------------------------------------------------------------T--------------------------------------------AAA-TT------------------------------------TA-ATAAATATTAAACTGAAT--AAGATCAAAATAAGAACA-----------------------------------------------------------------------------------------AACATGAGGAAAC-------------------------------------------------------------------------------------------------GCT-----AT--AGTCGAGTG-CCGCGACTATAAGATAC--------------------------------------------CC------------------------------
dm3 chrX:3447327-3447551 + TTTATAGAAAT---------------------------------------------TG-------------------AACAACTCATAATTATCAATAAAATTAAA-----------------------------------AT--------------------------------------------------T-TGTA---------------------------------------------------------------------------------------------AACAAACAAATACTAT----------------------------------------------------------------------------------------------------------------------------------------------AAAATATATTGCC---AAT--------------------------------------------ATA----------------------AT---------------TAGTTAAAATATATAATAAAT--AAATA-----------------------------------------------------------------------------------------AGCAAAAATTGGCTCATAGTACAAAA-----T---------------------------------------GTATCATCGCTGAACCGAAGTTGTTAACGAATCGAACAAAGGACATAAATTCATTGATGTGC--AGGCAAGTA-CCTC------------------------------------------------------------------------------ACGAATTTCCG
droSim2 node_90918:15490-15588 + AAATTTTATTGTATAAATAA--------------------------------------AACAATCATTTTTG----------------------------------------------AAATAGCATAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA----------------------------------AATAAAA------------------------------------------------------------------AACAAGAGAGAAT-------------------------------------------------------------------------------------------------GCT-----AT--AGTCGAGT--CCTCAACTATTAGA---------------------------------------------CTCC------------------------------
droSec2 scaffold_93:39620-39718 - AAATTTTATTGTATAAATAA--------------------------------------AACAATCATTTTTG----------------------------------------------AAATAGCATAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA----------------------------------AATAAAA------------------------------------------------------------------AACAAGAGAGAAT-------------------------------------------------------------------------------------------------GCT-----AT--AGTCGAGT--CCTCAACTATTAGA---------------------------------------------CTCC------------------------------
droYak3 chr2h:218465-218659 + TAATTTTTTTTTTTTT--------TTAGTATATATAAGT----TTTT----------T-------------------TGTGGTGGGAAATTATTGAAG------------------------------------------TTTG---------------------------------------------------GTGA----------------------------------------------------------------------------GGA-------------AAATATGT--TCATGTGAG----------A------GAATGGTGTTCTGTGTA-------------------------------------------------------------AA-------------------------------------------------------------T--------------------------------------------ATG-TG------------------------------------AA-GTAAATCGAAACAAAAAG--AGGAAAAAAACAGAAAAA-----------------------------------------------------------------------------------------AACAAGAGAGAAC-------------------------------------------------------------------------------------------------GCT-----AT--AGTCGAGTT-CCCCGACTATCTGATAC--------------------------------------------CC------------------------------
droEre2 scaffold_4838:201144-201292 - TTGTTTTTTTA--TTGTT---ACTTTAGCACA----------------------------------------AGTTTATTTATTCTTTATCAAATTCATAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAAATAAAT-----AAATAAATAAATTAATA----------------------------------------------------------------------------------------------------------------------------------------------ATAA--------------T--------------------------------------------AAT----------------------TT---------------TAAAAAAAATTTAA-T-----TT----------------------------------AATTAATTTAAAAAAAAATT----------------------------------------AA-------------------TAATAATAATA------------------------------------------------------------------------------------------------------------------------------A---------------------------------------------TAAA------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
CATTGTTTTTTTATTGGGAACATTTTTGTTTACGAAAGACTTT-----ATAAATGGTG-------------------AGTGGTTAGTGATTATTGAAACCATGCAG-----------------------------------AT--------------------------------------------------T-ATTA----------------------------------------------------------------------------AGAAGATAAATATTAA-------------AATAAT------------------------------------------------------AT-------------------------------------------------------------------------------------------ATTATA---AAT--------------------------------------------AAA----------------------TT---------------TAAATAATTCTTAAAGTAAAG--AAAAG-----------------------------------------------------------------------------------------AGAAAAAGTAAAAAAAAAGTAAGAAA-------------------------------------------------------------------------------------------------GCT-----CT--AGTCGAGACTGCTCGACTACGAGATCCCCTGAA------------------------------------CCCTTCGCGCAATAGCTTTTTCTATAATTTTTCGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......TTTTTATTGGGAACATTTTTGTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
..........TTATTGGGAACATTTTTGTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAGATCCCCTGAA------------------------------------CCCTTCGCG.........................2470.141100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACTGCTCGACTACGAGATCCCC..........................................................................24200.051000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGCTCGACTACGAGATCCCC..........................................................................23200.051000010
droVir3
TTTTAATTAAC------A---TTTTTCGTTAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAATTA---------------AACAACTAGCAATTATTTTCTGAGTAATAACCCTGCGAATGACGACTGTATTCTATAAATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAATACCC---------------------ATTTATTTAAATTTATTTAAAACCATTTAAATAACCATCAACTAAATCCT-----------AAGG-------------CTAATAAGTAAGAG----------GTT-----TT--AGTCGGGAGCTCCCGACTAGGGGATACCCTGAA------------------------------------CCCT------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATAACCCTGCGAATGACGACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000100000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................TAGCAATTATTTTCTGAGTAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000100000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGGGGATACCCTGAA------------------------------------CCC...............................21200.051000000000000000000000000000001000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTAAGAG----------GTT-----TT--AGTCGGG................................................................................................21200.051000000000000000000001000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGAGCTCCCGACTAGGGGAT..............................................................................22200.051000000010000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGACTAGGGGATACCCTGAA------------------------------------CCCT------------------------------26200.051000100000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAAGAG----------GTT-----TT--AGTCGGGA...............................................................................................21200.051000000000000000000000000000001000000000000000000000000000000000
droGri2
GTTTTCTTTTA--CAATT-------ATATATACAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATATGATTATATATAGGGAATTGTAAGTCATTGTGTCATTTCAGTTTATTAGCATAC--------------------------------------------------TT------------------------------------------------------AA-------------------------------------------------------------------------------------------TACGCAATTATCAGGGAGAAGTGCTAAACAATGATCTGTTGTAAT-----------TTT-T----------------------------------------------------------------------------------------AAAACAAATAAA-------------------------------------------------------------------AAGTAACAAGACT-------------------------------------------------------------------------------------------------GCT-----TT--AGTCGAGTGAGTTCGACTACGATATTCCCTGGA------------------------------------C---------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TTTTGTTTTTT--ATG-G-------------------------TTTT---------TG-------------------TTTTATTTGTGATTGTCGAAA------------------------------------------GATA---------------------------------------------------ATAT----------------------------------------------------------------------------AGT-------------AGATATATATACAAATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA-TTAAGTCGCCCTATATATATAT-ATTTCACAACATAAGTAAAGAA-----------------------------AAACT---------------------------------------AAC-------------------------------------------ATAAATGAAGTAAGTA--------------------------------------------------------------------------------------------------------------AGTCGTCT--CTCCGACTTCAATATACCATGCACCATGTTTCCATGTTTCCTTTCCGATAGCATTGAAATTCG------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTAAGTA--------------------------------------------------------------------------------------------------------------AGTCGTCT--CT...........................................................................................19130.15220000
dp5
AAGATATATACAAAAACAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAC---AACAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAACAAACAAACAAAACAAA-------------------------AAACAAAAGTACTGTACCTTCTTAGCGAA--AAAAACACC---------------------ACACAACTGTACTCAATTCCTGCCCATTAGATGACCTTCATATAGAACCT------------------------------------------------------------------------------------------------------------------------------------------------------------ATAATCCTCTGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
TGAAAACCCGT---------------------------------------------------------------------------------------------CG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTATCGAAAGATATATACAAAAACAAAAA-------------------------------------------------------------------------------------------ACAACA-----------------------------------------------------------------------------------------------------------------------AAAAAAAACAAACAAACAAAACAAA-------------------------AAACAAAAGTACTGTACCTTCTTAGCGAAAAAAAAACACC---------------------ACACAACTGTACTCAATTCCTGCCCATTAGATGACCTTCATATAGAACCT------------------------------------------------------------------------------------------------------------------------------------------------------------ATAATCCTCTGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
CATTCATTTTGTATAAAGCA--------------------------------------TACATTTTTCACAA----------------------------------------------TAAATGTATAGCAAAAA----G----------------------AGCGATTAATAAAAGCCAGGCTAACG--ATCT---------------------------------------------------------------------------------GGACAAAATATAAAAA-------------AAAAATATATAACGGAAAAATAAAAATTA-------------------------------------------------------------ATTTTTATACAAA-------------------------------------------------------------A--------------------------------------------AAA-AA------------------------------------TA-AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAA------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............TAAAGCA--------------------------------------TACATTTTTCACAA----------------------------------------------TAAATGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051001000
...................................................................................................................................AAAA----G----------------------AGCGATTAATAAAAGCCAGGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
....................................................................................................................................................................CGATTAATAAAAGCCAGGCTAACG--ATC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051010000
...................................................................................................................................................................GCGATTAATAAAAGCCAGGCTAACG--................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051100000
......................................................................................................................................A----G----------------------AGCGATTAATAAAAGCCAGGCTAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051010000
......................................................................................................................................A----G----------------------AGCGATTAATAAAAGCCAGGCTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051010000
...................................................................................................................................AAAA----G----------------------AGCGATTAATAAAAGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051001000
droBip1
AAGATTTTTAATTTAAAA------------------ATATTTT-----CTATATGTTG-------------------GC--------------------------------------------------------------------------------------------------------------------------------------------TGCACCAGTTTTTTGTGTTAATTCTTCTTA---ACATGCACCCCCTCACAAAATAA-----------------------------AAAAATTTTTTATAAAAA---------AATAACTAGTTTT------------------------TGGATTAAAAAAATTTCGATAAAACAAT---------------------------------------------------------------------------------------------------------TTTTTGAAAAAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACATTTTTAAAGCAAAGAATTTAAGGCACCAAAAAATGG----------GTT-----CTACATCCGATCT-C-TT----TCCAGAACTCCCGCA------------------------------------CTCT------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
CAGTAGATATTTGTTGAA---ATATTTGTAAAT----------------------------------------------------------G--------------------------------------AAATG----AAATGAAATAGTTAAATAATTAAAGGAAT-------------------------TGAATA----------------------------------------------------------------------------AAT-------------AAATAAATAAATAAAGA----------------------------------------------------------------------------------------------------------------------------------------------AAAA--------------A--------------------------------------------AAAT-AA-----AAAAATAAATAAATTAAATAAATAAATAGGCAAATA-----------------AATAA-----------------------A-------------------------AAATAA-----------------------------------------AT----------------------------------------------------------------------------------------------------------------------------------------AAATAAATAATTAA---------------------------------------------TAAA------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
TATTAAAAACA----GTT-------------------------TCTTTAAAAAAAAAAAAGGATTAGTGTTAAGTTAAATAATACATTATAAGAAATAAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAAAAT-------------AATAAT------------------------------------------------------AA-------------------------------------------------------------------------------------------AATACA---AATAAAAAGAAATGTAAAATAA------------------------------------------------------------------------------------------ATAATAATAATAATAA------------AATACA-------------------------------------------------------------------------AATAAAAAGA-------------------------------------------------------------------------------------------------------------------------------AATGTAAAA---------------------------------------------TTAA------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
AGGATATATAAATAAG-T-------------------------TATT---------TA-------------------ATTAATTAATAAATAAATAA-----------------------------------------------------------------ACCAAT-------------------------T-AATA----------------------------------------------------------------------------AAT-------------AAATAAATAGATAAATAAA------------------------------------------------------AA-------------------------------------------------------------------------------------------AAT----------------------------------------------------------AA-----AAAAATATATAAAT-AAATAAATAAATAAGCAAATAA-----------------------------A--------------A-------------------------AAATAA-------------------------------------------ATA-AATAAATAAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGT------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
GTTGTCAATCA-------------------------------------------------------CTTTTG-----------------------AAACC---AGAAATCTTTGACAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAT------------------------------------------------------AA--------------------------------------------------------------------------------------ACCATATTTTC------------AAACCTTAATTAA------------------------------------------------------------------------------------------ATAACAAAAATAGTAAGA-----------------------------------------------------------------------------------------AACAAGAAAGAAC-------------------------------------------------------------------------------------------------GCT-----AT--AGTCGAGTG-CCTCGACTATTAGATAC--------------------------------------------CC------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
TGCAAATGACA--AGGTT-------AGG------------------------------------------------------------GTTATTTAATCCA---AA-----------------------------------AT--------------------------------------------------T-ACTAAATCATGATTATTTAAAAAATATTAAAAATCAAAACTTCTACTTGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCAAAGCAGAC--AAAAA-----------------------------------------------------------------------------------------CGAAAAA--------------------------------------------------------------------------------------------GAAACCAAAAAAAGATGAAGACCTGGTGCAGTCT--AATTGAGTA----------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
ATTTTCGTTTC--TGAAT--------------------AACTT-----TTAAA-------------------------------AGTGA-------------------CTTTTTACAGT-AATGTGTAACATATTACAAATTTA---------------------------AAAAGGAAAAGTTAAAGGAATCT---------------------------------------------------------------------------------C------------------------------------------AAGG---------GCTATACAGTTTA------------------------AAGTTTTCAAGAAAATCGTTAGAGCCGT---------------------------------------------------------------------------------------------------------TTTTG-------------------------------------------------------------------AGA--AAAAT-----------------------------------------------------------------------------------------AAAAAAAGCAAAAAAAATTTAAAAAA------------------------------------------------------------------------------------------------------------------------------------C---------------------------------------------CTTT------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
ATCAAAAATAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATTA-------------------------------------------------------------AATTATATGCAAA-------------------------------------------------------------T--------------------------------------------AAA-TT------------------------------------TA-ATAAATATTAAACTGAAT--AAGATCAAAATAAGAACA-----------------------------------------------------------------------------------------AACATGAGGAAAC-------------------------------------------------------------------------------------------------GCT-----AT--AGTCGAGTG-CCGCGACTATAAGATAC--------------------------------------------CC------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
TTTATAGAAAT---------------------------------------------TG-------------------AACAACTCATAATTATCAATAAAATTAAA-----------------------------------AT--------------------------------------------------T-TGTA---------------------------------------------------------------------------------------------AACAAACAAATACTAT----------------------------------------------------------------------------------------------------------------------------------------------AAAATATATTGCC---AAT--------------------------------------------ATA----------------------AT---------------TAGTTAAAATATATAATAAAT--AAATA-----------------------------------------------------------------------------------------AGCAAAAATTGGCTCATAGTACAAAA-----T---------------------------------------GTATCATCGCTGAACCGAAGTTGTTAACGAATCGAACAAAGGACATAAATTCATTGATGTGC--AGGCAAGTA-CCTC------------------------------------------------------------------------------ACGAATTTCCGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....AGAAAT---------------------------------------------TG-------------------AACAACTCATAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAACAAAGGACATAAATTCATTGATG............................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCATCGCTGAACCGAAGTTG................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCC---AAT--------------------------------------------ATA----------------------AT---------------TAGTTAA............................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCATCGCTGAACCGAAGTTGTTAAC...........................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAATCGAACAAAGGACATAAATTC...................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACGAATCGAACAAAGGAC...........................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------------------------------------GTATCATCGCTGAACCGAAGTTGTT..............................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTACAAAA-----T---------------------------------------GTATCCG................................................................................................................................................................1840.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
droSim2
AAATTTTATTGTATAAATAA--------------------------------------AACAATCATTTTTG----------------------------------------------AAATAGCATAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA----------------------------------AATAAAA------------------------------------------------------------------AACAAGAGAGAAT-------------------------------------------------------------------------------------------------GCT-----AT--AGTCGAGT--CCTCAACTATTAGA---------------------------------------------CTCC------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA------------------------------------------------------------------AACAAGAGAGAAT-------------------------------------------------------------------------------------------------GCT-----AT--AGTCGAGT--.............................................................................................28200.10200000000020000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAGAAT-------------------------------------------------------------------------------------------------GCT-----AT--AGTCGAG................................................................................................21200.10200000000200000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA------------------------------------------------------------------AACAAGAGAGAAT-------------------------------------------------------------------------------------------------GCT-----AT--AGTCGAGT--.............................................................................................29170.06100000001000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGAGAGAAT-------------------------------------------------------------------------------------------------GCT-----AT--AGTCGAG................................................................................................25200.05100000010000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGAGAGAAT-------------------------------------------------------------------------------------------------GCT-----AT--AGTCGAGT--.............................................................................................26200.05100000001000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------------------------------------------------------------AACAAGAGAGAAT-------------------------------------------------------------------------------------------------GCT-----AT--AGTCGA.................................................................................................25200.05100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGAGAGAAT-------------------------------------------------------------------------------------------------GCT-----AT--AGTCGAG................................................................................................24200.05100000000010000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------------------------------------------------------------AACAAGAGAGAAT-------------------------------------------------------------------------------------------------G..................................................................................................................15200.05100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGAGAGAAT-------------------------------------------------------------------------------------------------GCT-----AT--AGTCGAGT--.............................................................................................25200.05100000000100000000
droSec2
AAATTTTATTGTATAAATAA--------------------------------------AACAATCATTTTTG----------------------------------------------AAATAGCATAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA----------------------------------AATAAAA------------------------------------------------------------------AACAAGAGAGAAT-------------------------------------------------------------------------------------------------GCT-----AT--AGTCGAGT--CCTCAACTATTAGA---------------------------------------------CTCC------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGAGAGAAT-------------------------------------------------------------------------------------------------GCT-----AT--AGTCGAGT--.............................................................................................25200.1022000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGAGAGAAT-------------------------------------------------------------------------------------------------GCT-----AT--AGTCGAG................................................................................................24200.0510100
droYak3
TAATTTTTTTTTTTTT--------TTAGTATATATAAGT----TTTT----------T-------------------TGTGGTGGGAAATTATTGAAG------------------------------------------TTTG---------------------------------------------------GTGA----------------------------------------------------------------------------GGA-------------AAATATGT--TCATGTGAG----------A------GAATGGTGTTCTGTGTA-------------------------------------------------------------AA-------------------------------------------------------------T--------------------------------------------ATG-TG------------------------------------AA-GTAAATCGAAACAAAAAG--AGGAAAAAAACAGAAAAA-----------------------------------------------------------------------------------------AACAAGAGAGAAC-------------------------------------------------------------------------------------------------GCT-----AT--AGTCGAGTT-CCCCGACTATCTGATAC--------------------------------------------CC------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................T----------T-------------------TGTGGTGGGAAATTATTGAAG------------------------------------------TTTG---------------------------------------------------G..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2820.50100100000000
..........................................................................................................................................................................................................................................................................................................T--TCATGTGAG----------A------GAATGGTGTTCTGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26100.20200200000000
..................................................................................................................................................................................................................................................................................................................................................TGTGTA-------------------------------------------------------------AA-------------------------------------------------------------T--------------------------------------------ATG-TG------------------------------------AA-GTAAATCGAAAC....................................................................................................................................................................................................................................................................................................................................................2860.17101000000000
...............................................................................................AAG------------------------------------------TTTG---------------------------------------------------GTGA----------------------------------------------------------------------------GGA-------------AAATATGT--TCATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2770.14101000000000
....................................................................................................................................................................................................TGA----------------------------------------------------------------------------GGA-------------AAATATGT--TCATGTGAG----------A------GA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2680.13100100000000
......................................................................................................................................................................................................................................................................................................TATGT--TCATGTGAG----------A------GAATGGTGTTCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28110.09100100000000
........................................................................................................................................................................................................................................................................................................TGT--TCATGTGAG----------A------GAATGGTGTTCTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27110.09100100000000
...............................................................................................................................................................................................................................................................................................................ATGTGAG----------A------GAATGGTGTTCTGTGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24130.08100100000000
......................................................................................................................................................................................................................................................................................................TATGT--TCATGTGAG----------A------GAATGGTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGAGAGAAC-------------------------------------------------------------------------------------------------GCT-----AT--AGTC...................................................................................................20200.05100100000000
droEre2
TTGTTTTTTTA--TTGTT---ACTTTAGCACA----------------------------------------AGTTTATTTATTCTTTATCAAATTCATAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAAATAAAT-----AAATAAATAAATTAATA----------------------------------------------------------------------------------------------------------------------------------------------ATAA--------------T--------------------------------------------AAT----------------------TT---------------TAAAAAAAATTTAA-T-----TT----------------------------------AATTAATTTAAAAAAAAATT----------------------------------------AA-------------------TAATAATAATA------------------------------------------------------------------------------------------------------------------------------A---------------------------------------------TAAA------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/18/2015 at 01:04 AM