dmo_1710

Name	Class	Family	Strand
MARWOLEN1	DNA	TcMar-Tc1	+
AT_rich	Low_complexity	Low_complexity	+

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GTCTACCGCTTCATTCAGAAGCCTGGAGACCTAGTTTGGGTAAATGCTGGGTAAGTAACTCAAGAAAATAGGGATTTTTTCGTTATTTATTGTTTTTAATAAATAAAATAAGACAACAGGGAAAAAATTTCATAAATTCAAAAATTTCGAATGAAGAAACCAAAAAATACACATAAACTAAGTGTTGCTCGTTTCATGAAAATGACCAAACCATTTTAAATATTTTTCCCATAAGATTAGCTATAGTCATT ************************************************.............(((..(((((((((((((.((.....(((((((........)))))))......)).))))))))))).))..)))................(((((.....(((((...........)))))....)))))......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	V110 male body	V041 embryo
......................CTGGAGACCTAGTTTGGGTA.................................................................................................................................................................................................................	20	0	1	1.00	1	0	1	0
...........................GACCTAGTTTGGGTAAATGCTGGGT.......................................................................................................................................................................................................	25	0	1	1.00	1	1	0	0
............ATTCAGAAGCCTGGAGACCTA..........................................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0
..................................TTTGTGTAAATGCTGGGGACG....................................................................................................................................................................................................	21	3	2	0.50	1	1	0	0
.................................GTTTGGCTAAATGCTGCG........................................................................................................................................................................................................	18	2	20	0.05	1	0	0	1

CAGATGGCGAAGTAAGTCTTCGGACCTCTGGATCAAACCCATTTACGACCCATTCATTGAGTTCTTTTATCCCTAAAAAAGCAATAAATAACAAAAATTATTTATTTTATTCTGTTGTCCCTTTTTTAAAGTATTTAAGTTTTTAAAGCTTACTTCTTTGGTTTTTTATGTGTATTTGATTCACAACGAGCAAAGTACTTTTACTGGTTTGGTAAAATTTATAAAAAGGGTATTCTAATCGATATCAGTAA ************************************************.............(((..(((((((((((((.((.....(((((((........)))))))......)).))))))))))).))..)))................(((((.....(((((...........)))))....)))))......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V110 male body	M046 female body
CAGTCGGCCAAGTAAGTCTT.......................................................................................................................................................................................................................................	20	3	6	0.17	1	1	0
.........................................................................................................................................................ATCTTTGGGTTTTTATGTGT..............................................................................	20	2	15	0.07	1	0	1

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6500:30064169-30064419 -	dmo_1710	G-TCTACCGCTTCATTCAGAAGCCTGGAGACCTAGTTTGGGTAAATGCTGGGTAAGTAACTC---------AAGAAAA--TAGG--GATTTTTTCGTTA---TTTATTGTTTTTAATAAATAAAAT-AAGACAACAGGG-AAAAAATTTCATAAATTCAAAAATTTCGAATGAAGAAA-CCAAAAAATACACATAAACTAAGTGTTGCTCGTTTCATGAAAATG-----ACCAAACC-ATTTTAAATATTTTTCCCATAA-G-----------------ATTAGCTATAGTCATT
droVir3	scaffold_12963:14234647-14234734 -		G-TATATCGGTTCATACAGAAACCTGGAGACTTAGTTTGGGTAAATGCTGGGTAAGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGT-CACATTAATTTA----------------------------AATTCTTTAACT--ATT
droGri2	scaffold_15126:7651180-7651238 -		G-TATATAGATTCATACAAAAACCTGGTGACTTAGTTTGGGTAAATGCTGGGTAAGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC
droWil2	scf2_1100000004909:984120-984323 +		T-TTT----------------------------------------------------------------------------------GGTTTTGTATTGG--TGTTTCATTTTTAACAAATAAGAATAATGAAAC-AAAGT--AAATTAGATAAAAACAAAGAGTATTAGAAAAACAAAGAAAATAATCCACATTAATTCATTTTTGCACGTTTCGCCAAAATAATAAACTCAAAGA-AATTTTAATATTTTGTCCATAA-ACCTTTATTAGAAATCACTTGATTAATGCG-ATT
dp5	Unknown_group_543:756-994 +		T-AACAGCC----------------------------------------AAACGAATAAAG----CAAAGCAAAAGA---AC--TTTTTTCCCATATCAATACACTTTATTCTTAGCAAATAGGTA-ATAATAACAAAA-CG-AAATGAGAAGTTGTCAAAGAGTGAAAAAGAAAAAAGCAAAAAAACTCGCATGTACTCAGTTTTGCACTTTTACAAAAATCAAAGAAAATAACAT-AGTATTAATATTTTGTCCATAG-ACCCTTATTAGCTATTACTTTATTAACACG-GTT
droPer2	scaffold_30:395176-395287 +		C-A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAACTCGCATGTACTCAGTTTTGCACTTTTACAAAAATCAAAGAAAATAACAT-CGTATTAATATTTTGTCCATAG-ACCCTTATTAGCTATTACTTTATTAACACG-GTT
droAna3	scaffold_13339:2918539-2918751 +		A-CACAAGA--TAATCC------------------------------------------------------CAAAATT--TT--TTTTGTTTTATATTCA-TTATTTTATTCTTAATAAATTTTAA-GCAAAAACAGTCATG--CCAGAGATAAATTCTAGGAGAATAACAAAAAAAACGAAAAAAACCAGCATAAACTCAATTTTGCACGTTTCCAGATGTTTTAATTATTAAATT-AATATTAATATTTTGTCCAAAG-ACCTTTATTTGAAATAAC---------------T
droBip1	scf7180000394386:24821-25036 +		A-ATAACACAA-----CAAAA-TCC----------------------------------------------AAAAAT---TT--TTTTGTTTTCTATTAA-TTATTTAATTCTTAATTAATTCTAA-ACAAAAACAATGATA--ATATACATGAATTCGAGGAGACTTAAAGTAAAAACGAAAAAAACCCGCATAAACTCAATTTTGCACGTTTCAAAAAGTTTTAATTATTAAAAT-AATATTAATATTTTGTCCAAAG-ACCCTTATTTAAGATAAC---------------T
droKik1	scf7180000302401:250559-250780 +		A-AGTAAAT-------------GACAAAAACTTTTTTTTATTGAACACC-----------------------------------------------------TTGTTTATTTTTTACAATTAGGCAT-ACGTAGCAAAA-TT-ATAGATGAAGAAATTAAATTGTTATAATTAAAAAACAAAAACAAGCAGCATGTACTCAGTTTTGCACCATTGAAGAAAAAATTCAAAATAAATTCATTATAAATATTTTGCCCAGAG-ACCCTTAATTTCTATGATATTTTTTATACA--TT
droFic1	scf7180000454050:914482-914699 +		A-GATAATT----------------------------------------T---------------------AACAAAG--TAA--AT-TTTTTATGTTTA-CTATTTTATTTATAACAAATGTGAA-AAAGAATCAATA-TC-ATATAAGGTAAATTCTAAAAGTTAGAAAGAAA-AA-CCAAAAAACACGCATAAACTCACTTTTGCACGTTTGAACCAAATTATTTAAATATATC-CATTTTAATATTTGGTCCGCAA-ACCCTTATTAGCCATAATTTTATTAATGCA--TT
droEle1	scf7180000491186:3355776-3355833 -		G-TCTACAGATTTATACAAAAACCCGGAGACTTGGTTTGGGTGAACGCTGGGTAAGCA-A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1	scf7180000777490:525-745 +		A-GATAATC----------------------------------------A---------------------AACAAAG--TTA--ATATTTTTATGTTAA-CCATTTCATTCATAACAAATGCGAA-AAAGAAACAATA-TC-GTAT--TCTAAATTCTAAAAGTTAGAAAGAAAAAACCAGAAAAACCCGCATAAACTCACTTTTGCACGTTTTAAAAAAATTAAATAAATAAATC-CATTTTAATATTTTGTCCACAAAACCCTTATTAGCAATAACTTGATTAATGCG-GTT
droBia1	scf7180000301468:401795-401851 -		G-TTTACAGATTTATACAGAAACCCGGCGACTTGGTTTGGGTGAACGCGGGGTAAGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1	scf7180000410938:2323-2502 -		T-TCCT------------------------------------------------------------------------------------------------TATTTAATTTGTAAGAAATAAACTT-AAATACCTCAA-TA-ATACAAAAAGAAATGTAAGAGAGAAAATT-AAAAACAAAAACAGAAGGCATGTACTCAGTTTTGCACCTTTTATGAAAAATTGTAAAAAAATAT-CAAATTAATATTTGGTCCAAAG-ACCCTTATTGTCTATTACAT------------TT
droEug1	scf7180000409850:48580-48790 -		A-CACAA--GATAATCC------------------------------------------------------AAAAAT---TT--TTTTGTTTTATTTTGA-TTATTTAATTCTTAATAAGTTTTAA-GCAAAAACAATCATG--GCATAAATAAATTCGAGGAGAATTACGGTAAAAAC-GAAAAAACCCGCATAAACTCAATTTTGCACGTTTCTAGAAGTTTTAATTATTACAAT-AATATTAATATTTTGTCCAAAG-ACCTTTATTTGAGATAAC---------------T
dm3	chr2L:10273456-10273512 -		G-TTTATAGATTTATACAAAAGCCCGGTGACTTGGTTTGGGTGAATGCCGGGTAAGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2	2l:9951210-9951282 -		G-TTTATAGATTTATACAGAAACCCGGTGACTTGGTTTGGGTGAATGCCGGGTAAGCA-CTGAAT---------ATAA--AAGG--AA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2	scaffold_3:5698481-5698553 -		G-TTTATAGATTTATACAGAAACCCGGTGACTTGGTTTGGGTGAATGCCGGGTAAGCA-CTGAAT---------ATAA--AAGG--AA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3	v2_chr2L_random_028:1397816-1398061 -		AGCTTACATACATAT---------------------------------TAAACGAGTAATG----TAAATGACAAAAACTTT--TTTTTTATTGAACACC--TTGCTTATTTCTTACACTTAGGCGT-AAATAGCAAAA-TA-GAAAAAGGAGAAATCGAAAAGTAATAATTCAAAAACAAAAACCAGCGGCATGTACTTAGTTGTGCACCATTTGAGAAAAAATACA---AAATTC-ATTATTAATATTTTGTCCAGAG-ACCCTTTTTTTCTATGACATTTTTTATACATACT
droEre2	scaffold_4512:649120-649311 -		T-TTTATATTTTTTTTAA--------------------------------------------------------------------------------TA-GTAGTTAATTTGTAACAACAAGACGT-AAGTAATTAAG-TA-ATTTAAGAAGCTATAGACTA--------------G-CTAAACAAGCGGCATGTACTCAGTTTTGCACCATTTATGAAAAACTACAAAATAAATTCATTATTAATATTTTGTCCAGAG-ACCCTTATTTTTTAAGACATTTGTTATACG--TT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

G-TCTACCGCTTCATTCAGAAGCCTGGAGACCTAGTTTGGGTAAATGCTGGGTAAGTAACTC---------AAGAAAA--TAGG--GATTTTTTCGTTA---TTTATTGTTTTTAATAAATAAAAT-AAGACAACAGGG-AAAAAATTTCATAAATTCAAAAATTTCGAATGAAGAAA-CCAAAAAATACACATAAACTAAGTGTTGCTCGTTTCATGAAAATG-----ACCAAACC-ATTTTAAATATTTTTCCCATAA-G-----------------ATTAGCTATAGTCATT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.......................CTGGAGACCTAGTTTGGGTA............................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
............................GACCTAGTTTGGGTAAATGCTGGGT..................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.............ATTCAGAAGCCTGGAGACCTA.....................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0

droVir3

G-TATATCGGTTCATACAGAAACCTGGAGACTTAGTTTGGGTAAATGCTGGGTAAGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGT-CACATTAATTTA----------------------------AATTCTTTAACT--ATT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.....................ACCTGGAGACTTAGTTTG................................................................................................................................................................................................................................................................	18	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........TCATACAGAAACCTGGAGACTTAGTT..................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............CATACAGAAACCTGGAGACTTAGTT..................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................GACTTAGTTTGGGTAAATGCTGG....................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................AACCTGGAGACTTAGTTT.................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......TCGGTTCATACAGAAACCTGGAGACT.......................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

G-TATATAGATTCATACAAAAACCTGGTGACTTAGTTTGGGTAAATGCTGGGTAAGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

T-TTT----------------------------------------------------------------------------------GGTTTTGTATTGG--TGTTTCATTTTTAACAAATAAGAATAATGAAAC-AAAGT--AAATTAGATAAAAACAAAGAGTATTAGAAAAACAAAGAAAATAATCCACATTAATTCATTTTTGCACGTTTCGCCAAAATAATAAACTCAAAGA-AATTTTAATATTTTGTCCATAA-ACCTTTATTAGAAATCACTTGATTAATGCG-ATT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...........................................................................................................................................................................................TCCACATTAATTCATTTTTGCACGTT..................................................................................	26	1	1.00	1	0	0	0	1	0

dp5

T-AACAGCC----------------------------------------AAACGAATAAAG----CAAAGCAAAAGA---AC--TTTTTTCCCATATCAATACACTTTATTCTTAGCAAATAGGTA-ATAATAACAAAA-CG-AAATGAGAAGTTGTCAAAGAGTGAAAAAGAAAAAAGCAAAAAAACTCGCATGTACTCAGTTTTGCACTTTTACAAAAATCAAAGAAAATAACAT-AGTATTAATATTTTGTCCATAG-ACCCTTATTAGCTATTACTTTATTAACACG-GTT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.....................................................................................................................................................GAAGTTGTCAAAGAGTGAAAAAGA..........................................................................................................................	24	6	23.17	139	0	117	0	0	3	0	11	8	0	0
.....................................................................................................................................................GAAGTTGTCAAAGAGTGAAAAAG...........................................................................................................................	23	6	6.83	41	0	39	0	0	0	0	1	1	0	0
.....................................................................................................................................................GAAGTTGTCAAAGAGTGAAAAAGAAA........................................................................................................................	26	6	5.33	32	0	25	0	0	0	0	2	5	0	0
.....................................................................................................................................................GAAGTTGTCAAAGAGTGAAAAAGAA.........................................................................................................................	25	6	3.67	22	0	17	0	0	0	0	0	5	0	0
............................................................................................CATATCAATACACTTTATTCTTAGC..................................................................................................................................................................................	25	5	1.60	8	0	8	0	0	0	0	0	0	0	0
............................................................................................CATATCAATACACTTTATTCTTAGCAAA...............................................................................................................................................................................	28	5	1.60	8	0	4	0	0	0	0	0	4	0	0
.......................................................................................................................................................................................................................................TAACAT-AGTATTAATATTTTGTCCA......................................	25	4	1.50	6	0	0	0	0	0	0	0	6	0	0
.............................................................................................................................................................................................................................................................................TAGCTATTACTTTATTAACACG-GTT	25	6	1.33	8	0	3	1	0	1	0	0	2	1	0
...............................................................................................................................................................................................CATGTACTCAGTTTTGCACTTTTACAA.............................................................................	27	4	1.25	5	0	5	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................CATGTACTCAGTTTTGCACTTTTA................................................................................	24	4	1.25	5	0	5	0	0	0	0	0	0	0	0
............................................................................................CATATCAATACACTTTATTCTTAG...................................................................................................................................................................................	24	5	1.20	6	0	2	0	0	0	0	0	4	0	0
..............................................................................................TATCAATACACTTTATTCTTAGC..................................................................................................................................................................................	23	5	1.20	6	0	4	2	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................TAACAT-AGTATTAATATTTTGTCCAT.....................................	26	4	1.00	4	0	0	0	0	0	0	0	4	0	0
......................................................................................................................................................AAGTTGTCAAAGAGTGAAAAAGA..........................................................................................................................	23	6	0.83	5	0	5	0	0	0	0	0	0	0	0
................................................................................................................................TAATAACAAAA-CG-AAATGAGAAGTTGTC.........................................................................................................................................	28	5	0.80	4	0	0	0	0	0	0	0	4	0	0
............................................................................................CATATCAATACACTTTATTCTTAGCA.................................................................................................................................................................................	26	5	0.80	4	0	4	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................TACTCAGTTTTGCACTTTTACAAAAA..........................................................................	26	5	0.80	4	0	4	0	0	0	0	0	0	0	0
..............................................................................................TATCAATACACTTTATTCTTAGCAAA...............................................................................................................................................................................	26	5	0.80	4	0	4	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................TGTCCATAG-ACCCTTATTAGCTATTACTT..............	29	4	0.75	3	0	3	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................TAACAT-AGTATTAATATTTTGTCCATA....................................	27	4	0.75	3	0	0	0	0	0	0	0	3	0	0
.........................................................................................TCCCATATCAATACACTTTATTCT......................................................................................................................................................................................	24	4	0.75	3	0	0	0	0	0	0	0	3	0	0
......................................................................................................................................................AAGTTGTCAAAGAGTGAAAAAG...........................................................................................................................	22	6	0.67	4	0	4	0	0	0	0	0	0	0	0
............................................................................................CATATCAATACACTTTATTCTTA....................................................................................................................................................................................	23	5	0.60	3	0	3	0	0	0	0	0	0	0	0
............................................................................................CATATCAATACACTTTATTCTTAGCAA................................................................................................................................................................................	27	5	0.60	3	0	1	0	0	0	0	0	2	0	0
................................................................................................................................................................................................ATGTACTCAGTTTTGCACTTTTACAAAAA..........................................................................	29	5	0.60	3	0	3	0	0	0	0	0	0	0	0
.............................................................................................................................................................CAAAGAGTGAAAAAGAAAAAAGC...................................................................................................................	23	7	0.57	4	0	4	0	0	0	0	0	0	0	0
............................................................................................................................................................................................TCGCATGTACTCAGTTTTGCACTTT..................................................................................	25	7	0.57	4	0	4	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................TACAAAAATCAAAGAAAATAACAT-AG.......................................................	26	4	0.50	2	0	0	0	0	0	0	0	2	0	0
.......................................................................................................................................................AGTTGTCAAAGAGTGAAAAAGAA.........................................................................................................................	23	6	0.50	3	0	3	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................ATTTTGTCCATAG-ACCCTTATTAG.......................	24	4	0.50	2	0	0	0	0	0	0	0	2	0	0
..................................................................................................................................................TGAGAAGTTGTCAAAGAGTGAAAAAGA..........................................................................................................................	27	6	0.50	3	0	3	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................CAAAGAAAATAACAT-AGTATTAATAT..............................................	26	4	0.50	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................TTTGTCCATAG-ACCCTTATTAGC......................	23	4	0.50	2	0	0	0	0	0	0	0	2	0	0
..........................................................................................................................................................................................................................................................................TATTAGCTATTACTTTATTAACACG-GTT	28	6	0.50	3	0	3	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................ATTAGCTATTACTTTATTAACACG-GTT	27	6	0.50	3	0	2	0	0	0	0	0	1	0	0
........................................................................................................................................................................................................................................................TTTTGTCCATAG-ACCCTTATTAGCTA....................	26	4	0.50	2	0	1	0	0	0	0	0	1	0	0
...................................................................................................................................................................................................................................................TAATATTTTGTCCATAG-ACCCTTAT..........................	25	4	0.50	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................TTTCCCATATCAATACACTTTATTCT......................................................................................................................................................................................	26	4	0.50	2	0	0	0	0	0	0	0	0	2	0
...........................................................................................................................................................................................................................................................TGTCCATAG-ACCCTTATTAGCTATTACT...............	28	4	0.50	2	0	1	1	0	0	0	0	0	0	0
...................................................................................................................................................GAGAAGTTGTCAAAGAGTGAAAAAGA..........................................................................................................................	26	6	0.50	3	0	3	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................CATGTACTCAGTTTTGCACTTTTAC...............................................................................	25	4	0.50	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................AAGTTGTCAAAGAGTGAAAAAGAAA........................................................................................................................	25	6	0.50	3	0	1	0	0	0	0	0	2	0	0
............................................................................................................................................................................................................................................................................TTAGCTATTACTTTATTAACACG-GTT	26	6	0.50	3	0	0	0	0	0	0	0	3	0	0
...............................................................................................................................................................................................CATGTACTCAGTTTTGCACTTTT.................................................................................	23	7	0.43	3	0	3	0	0	0	0	0	0	0	0
..................................................................................................................................................TGAGAAGTTGTCAAAGAGTGAAAAA............................................................................................................................	25	7	0.43	3	0	1	0	0	0	0	0	2	0	0
.....................................................................................................................................................GAAGTTGTCAAAGAGTGAAAAA............................................................................................................................	22	7	0.43	3	0	2	0	0	0	0	1	0	0	0
............................................................................................................................TA-ATAATAACAAAA-CG-AAATGAGAAGT.............................................................................................................................................	27	5	0.40	2	0	1	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................TCAGTTTTGCACTTTTACAAAAA..........................................................................	23	5	0.40	2	0	0	0	0	0	0	0	2	0	0
...............................................................................................ATCAATACACTTTATTCTTAGCA.................................................................................................................................................................................	23	5	0.40	2	0	2	0	0	0	0	0	0	0	0
................................................................................................................................................................................................ATGTACTCAGTTTTGCACTTTTACAAA............................................................................	27	5	0.40	2	0	2	0	0	0	0	0	0	0	0
........................................................TAAAG----CAAAGCAAAAGA---AC--TTTTTTCC...........................................................................................................................................................................................................	27	3	0.33	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................TGAAAAAGAAAAAAGCAAAAAAAC...........................................................................................................	24	6	0.33	2	0	2	0	0	0	0	0	0	0	0
..........................................................AAG----CAAAGCAAAAGA---AC--TTTTTTCCC..........................................................................................................................................................................................................	26	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................AGTTGTCAAAGAGTGAAAAAG...........................................................................................................................	21	6	0.33	2	0	0	0	0	0	0	2	0	0	0
...........................................................AG----CAAAGCAAAAGA---AC--TTTTTTCC...........................................................................................................................................................................................................	24	3	0.33	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................AGAAGTTGTCAAAGAGTGAAAAAGAAA........................................................................................................................	27	6	0.33	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................GAGAAGTTGTCAAAGAGTGAAAAAG...........................................................................................................................	25	6	0.33	2	0	2	0	0	0	0	0	0	0	0
........................................................................AAAGA---AC--TTTTTTCCCATATC.....................................................................................................................................................................................................	21	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................GAAGTTGTCAAAGAGTGAA...............................................................................................................................	19	7	0.29	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................TTTTGTCCATAG-ACCCTTATTAGC......................	24	4	0.25	1	0	0	1	0	0	0	0	0	0	0
.....................................................GAATAAAG----CAAAGCAAAAGA---AC--TT.................................................................................................................................................................................................................	24	4	0.25	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................TTTTGTCCATAG-ACCCTTATTAGCT.....................	25	4	0.25	1	0	0	1	0	0	0	0	0	0	0
......................................................................................TTTTCCCATATCAATACACTT............................................................................................................................................................................................	21	4	0.25	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................TTAATATTTTGTCCATAG-A.................................	19	4	0.25	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................T-AGTATTAATATTTTGTCCATAG-ACCCT.............................	28	4	0.25	1	0	0	0	0	0	0	0	1	0	0
...................................................................................................................................................................................................................................................TAATATTTTGTCCATAG-ACCCTTA...........................	24	4	0.25	1	0	1	0	0	0	0	0	0	0	0
..................................................AACGAATAAAG----CAAAGCAAAAGA---AC--...................................................................................................................................................................................................................	25	4	0.25	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TCCATAG-ACCCTTATTAGCTATTACT...............	26	4	0.25	1	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................TATTTTGTCCATAG-ACCCTTATTAGC......................	26	4	0.25	1	0	0	0	0	0	0	0	1	0	0
.......CC----------------------------------------AAACGAATAAAG----CAAAGCAAAAGA---A......................................................................................................................................................................................................................	27	4	0.25	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................CAT-AGTATTAATATTTTGTCCATAG-ACCC..............................	29	4	0.25	1	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................TATTTTGTCCATAG-ACCCTTATTAGAA.....................	27	4	0.25	1	0	1	0	0	0	0	0	0	0	0
........C----------------------------------------AAACGAATAAAG----CAAAGCAAAAGA---AC--...................................................................................................................................................................................................................	27	4	0.25	1	0	0	1	0	0	0	0	0	0	0
.........................................................................................TCCCATATCAATACACTTTATTC.......................................................................................................................................................................................	23	4	0.25	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................TGTCCATAG-ACCCTTATTAGCTATTAC................	27	4	0.25	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................T-AGTATTAATATTTTGTCCATAG-ACCC..............................	27	4	0.25	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................TATTTTGTCCATAG-ACCCTTAT..........................	22	4	0.25	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TCAAAGAAAATAACAT-AGTATTAATAA..............................................	27	4	0.25	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TCAAAGAAAATAACAT-AGTATTAATAT..............................................	27	4	0.25	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................TATTAATATTTTGTCCATAG-ACCCT.............................	25	4	0.25	1	0	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................TTGTCCATAG-ACCCTTATTAGCTAT...................	25	4	0.25	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................AATATTTTGTCCATAG-ACCCTTAT..........................	24	4	0.25	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................ATGTACTCAGTTTTGCACTTTT.................................................................................	22	9	0.22	2	0	2	0	0	0	0	0	0	0	0
................................................................................................................................TAATAACAAAA-CG-AAATGAGAAGT.............................................................................................................................................	24	5	0.20	1	0	0	1	0	0	0	0	0	0	0
T-AACAGCC----------------------------------------AAACGAATAAAG----CAAAGCAA..............................................................................................................................................................................................................................	28	5	0.20	1	0	0	0	0	0	0	0	1	0	0
.............................................................................................ATATCAATACACTTTATTCTTAGCA.................................................................................................................................................................................	25	5	0.20	1	0	1	0	0	0	0	0	0	0	0
............................................................................................CATATCAATACACTTTATTCTTAA...................................................................................................................................................................................	24	5	0.20	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................TATCAATACACTTTATTCTTAGCAA................................................................................................................................................................................	25	5	0.20	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................GAAAAAAGCAAAAAAACTCGCATGTAC.................................................................................................	27	5	0.20	1	0	0	1	0	0	0	0	0	0	0
..............................................................................................TATCAATACACTTTATTCTTA....................................................................................................................................................................................	21	5	0.20	1	0	0	1	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................TAG-ACCCTTATTAGCTATTACT...............	22	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................ATATCAATACACTTTATTCTTAGC..................................................................................................................................................................................	24	5	0.20	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................TACTCAGTTTTGCACTTTTACAAAAATC........................................................................	28	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................CTCAGTTTTGCACTTTTACAAAAA..........................................................................	24	5	0.20	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................ATGTACTCAGTTTTGCACTTTTAC...............................................................................	24	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................TGTACTCAGTTTTGCACTTTTACAAAAAT.........................................................................	29	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................ATATCAATACACTTTATTCTT.....................................................................................................................................................................................	21	5	0.20	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................TATCAATACACTTTATTCTTAG...................................................................................................................................................................................	22	5	0.20	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................TACTCAGTTTTGCACTTTTACAAAA...........................................................................	25	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................TGTACTCAGTTTTGCACTTTTACAAAAA..........................................................................	28	5	0.20	1	0	1	0	0	0	0	0	0	0	0
..........................................................AAG----CAAAGCAAAAGA---AC--TTT................................................................................................................................................................................................................	20	5	0.20	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................ATAG-ACCCTTATTAGCTATTACA...............	23	5	0.20	1	0	1	0	0	0	0	0	0	0	0
........................................................TAAAG----CAAAGCAAAAGA---AC--A..................................................................................................................................................................................................................	20	5	0.20	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................AAGCAAAAAAACTCGCATGTACTCAG.............................................................................................	26	5	0.20	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................GAGAAGTTGTCAAAGAGTGAAAAAGAA.........................................................................................................................	27	6	0.17	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................CAAAA-CG-AAATGAGAAGTTGT..........................................................................................................................................	21	6	0.17	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................GAAGTTGTCAAAGAGTGAAAAAGC..........................................................................................................................	24	6	0.17	1	0	0	0	0	0	0	1	0	0	0
.....................................................................................................................................................GAAGTTGTCAAAGAGTGAAAAAGAAAA.......................................................................................................................	27	6	0.17	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................CAAAAAAACTCGCATGTACTC...............................................................................................	21	6	0.17	1	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................CAAAGAGTGAAAAAGAAAAAAGCAAAAA..............................................................................................................	28	6	0.17	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................TTTATTCTTAGCAAATAGGTA-........................................................................................................................................................................	21	6	0.17	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................TAACAAAA-CG-AAATGAGAAGTTGTCAA.......................................................................................................................................	27	6	0.17	1	0	0	0	0	0	0	0	0	1	0
..................................................................................................................................................TGAGAAGTTGTCAAAGAGTGAAAAAG...........................................................................................................................	26	6	0.17	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................ACAAAA-CG-AAATGAGAAGTTG...........................................................................................................................................	21	6	0.17	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................AAAAAAACTCGCATGTACTCA..............................................................................................	21	6	0.17	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................AGAAGTTGTCAAAGAGTGAAAAAGA..........................................................................................................................	25	6	0.17	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................GAAGTTGTCAAAGAGTGAAAAAGT..........................................................................................................................	24	6	0.17	1	0	0	0	0	0	0	1	0	0	0
.............................................................................................................................................................CAAAGAGTGAAAAAGAAAAAAGCA..................................................................................................................	24	7	0.14	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................GTCAAAGAGTGAAAAAGAAAAAAGCA..................................................................................................................	26	7	0.14	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................CATGTACTCAGTTTTGCACTT...................................................................................	21	7	0.14	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................CATGTACTCAGTTTTGCACTTT..................................................................................	22	7	0.14	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................GAAGTTGTCAAAGAGTGAAAAAA...........................................................................................................................	23	7	0.14	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................AACTCGCATGTACTCAGTTTTGCACTT...................................................................................	27	7	0.14	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................CTCGCATGTACTCAGTTTTGC.......................................................................................	21	7	0.14	1	0	0	0	0	1	0	0	0	0	0
......................................................................................................................................................AAGTTGTCAAAGAGTGAAAAA............................................................................................................................	21	7	0.14	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................AAACTCGCATGTACTCAGT............................................................................................	19	7	0.14	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................AAAGAGTGAAAAAGAAAAAAGCA..................................................................................................................	23	7	0.14	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................ACTCGCATGTACTCAGTTTTGCACTT...................................................................................	26	7	0.14	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................TGTCAAAGAGTGAAAAAGAAAAAAGC...................................................................................................................	26	7	0.14	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................AAGTTGTCAAAGAGTGAA...............................................................................................................................	18	7	0.14	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................GAAGTTGTCAAAGAGTGAAA..............................................................................................................................	20	7	0.14	1	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................................................TTGTCAAAGAGTGAAAAAG...........................................................................................................................	19	7	0.14	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................AGAAGTTGTCAAAGAGTGAAA..............................................................................................................................	21	7	0.14	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................GCATGTACTCAGTTTTGCAC.....................................................................................	20	7	0.14	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................CAAAGAGTGAAAAAGAAAAAAG....................................................................................................................	22	7	0.14	1	0	1	0	0	0	0	0	0	0	0

droPer2

C-A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAACTCGCATGTACTCAGTTTTGCACTTTTACAAAAATCAAAGAAAATAACAT-CGTATTAATATTTTGTCCATAG-ACCCTTATTAGCTATTACTTTATTAACACG-GTT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.........................................................................................................................................................................................................................................................TTTGTCCATAG-ACCCTTATTAGCTAT...................	26	2	1.00	2	0	2	0	0	0	0
..........................................................................................................................................................................................................................................................................TATTAGCTATTACTTTATTAACACG-GT.	27	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................TATTTTGTCCATAG-ACCCTTATTAGC......................	26	2	1.00	2	0	2	0	0	0	0
...........................................................................................................................................................................................................................................................TGTCCATAG-ACCCTTATTAGCTATTACTT..............	29	2	0.50	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................TATTTTGTCCATAG-ACCCTTAT..........................	22	2	0.50	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................TATTTTGTCCATAG-ACCCTTA...........................	21	2	0.50	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................TGTCCATAG-ACCCTTATTAGCTATTACT...............	28	2	0.50	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................TAG-ACCCTTATTAGCTATTACTA..............	23	2	0.50	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................AATATTTTGTCCATAG-ACCC..............................	20	2	0.50	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................TGTCCATAG-ACCCTTATTAGCTATTACTA..............	29	2	0.50	1	0	1	0	0	0	0

droAna3

A-CACAAGA--TAATCC------------------------------------------------------CAAAATT--TT--TTTTGTTTTATATTCA-TTATTTTATTCTTAATAAATTTTAA-GCAAAAACAGTCATG--CCAGAGATAAATTCTAGGAGAATAACAAAAAAAACGAAAAAAACCAGCATAAACTCAATTTTGCACGTTTCCAGATGTTTTAATTATTAAATT-AATATTAATATTTTGTCCAAAG-ACCTTTATTTGAAATAAC---------------T	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...............................................................................................................................................................................................CATAAACTCAATTTTGCACGT...................................................................................	21	20	3.05	61	9	0	0	0	51	1
................................................................................................................................................................................................ATAAACTCAATTTTGCACGTT..................................................................................	21	17	1.12	19	13	0	0	0	4	2
.................................................................................................................................................................................................TAAACTCAATTTTGCACGTTT.................................................................................	21	17	0.65	11	9	0	0	1	1	0
..........................................................................................................................TTAA-GCAAAAACAGTCATG--CCAGAGA................................................................................................................................................	26	9	0.56	5	4	0	0	0	0	1
...........................................................................................................................TAA-GCAAAAACAGTCATG--CCAGAGATA..............................................................................................................................................	27	9	0.44	4	1	0	0	1	2	0
..............................................................................................................................................................................................GCATAAACTCAATTTTGCACGTTTCCAGA............................................................................	29	5	0.40	2	2	0	0	0	0	0
..........................................................................................................................TTAA-GCAAAAACAGTCATG--CCAGAGATA..............................................................................................................................................	28	9	0.33	3	0	0	0	0	2	1
.................................................................................................................................AAAAACAGTCATG--CCAGAGA................................................................................................................................................	20	9	0.33	3	3	0	0	0	0	0
................................................................................................................................................................................AACGAAAAAAACCAGCATAAACTCAAT............................................................................................	27	3	0.33	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................TCCAAAG-ACCTTTATTTGAAATAAC---------------T	26	4	0.25	1	0	1	0	0	0	0
....................................................................................................................................AACAGTCATG--CCAGAGATAAATTCTAG......................................................................................................................................	27	9	0.22	2	2	0	0	0	0	0
...........................................................................................................................TAA-GCAAAAACAGTCATG--CCAGAGAT...............................................................................................................................................	26	9	0.22	2	0	1	0	0	1	0
..................................................................................................................................AAAACAGTCATG--CCAGAGATAAATTC.........................................................................................................................................	26	9	0.22	2	0	2	0	0	0	0
.................................................................................................................................................................................................TAAACTCAATTTTGCACGTTTCCAG.............................................................................	25	5	0.20	1	1	0	0	0	0	0
.................................................................................................................................................................................................TAAACTCAATTTTGCACGTTTCCAGA............................................................................	26	5	0.20	1	0	1	0	0	0	0
................................................................................................................................................................................................ATAAACTCAATTTTGCACGT...................................................................................	20	20	0.15	3	3	0	0	0	0	0
............................................................................................................................................................................................................................................T-AATATTAATATTTTGTCCAAAG-ACC...............................	26	7	0.14	1	0	1	0	0	0	0
.............................................................................................................................A-GCAAAAACAGTCATG--CCAGA..................................................................................................................................................	21	9	0.11	1	1	0	0	0	0	0
..........................................................................................................................TTAA-GCAAAAACAGTCATG--CCAGAG.................................................................................................................................................	25	9	0.11	1	0	0	0	0	0	1
.............................................................................................................................A-GCAAAAACAGTCATG--CCAGAGATAA.............................................................................................................................................	26	9	0.11	1	0	0	0	0	1	0
...........................................................................................................................TAA-GCAAAAACAGTCATG--CCAGAGATAA.............................................................................................................................................	28	9	0.11	1	0	0	0	0	1	0
...........................................................................................................................TAA-GCAAAAACAGTCATG--CCAGAGT................................................................................................................................................	25	9	0.11	1	0	0	0	0	1	0
....................................................................................................................................AACAGTCATG--CCAGAGATAAATTCT........................................................................................................................................	25	9	0.11	1	0	0	1	0	0	0
.............................................................................................................................A-GCAAAAACAGTCATG--CCAGAGA................................................................................................................................................	23	9	0.11	1	1	0	0	0	0	0
...................................................................................................................................AAACAGTCATG--CCAGAGATA..............................................................................................................................................	20	9	0.11	1	0	0	0	0	0	1
.............................................................................................................................A-GCAAAAACAGTCATG--CCAGAGATAAA............................................................................................................................................	27	9	0.11	1	0	0	0	0	0	1
...................................................................................................................................AAACAGTCATG--CCAGAGATAAATTC.........................................................................................................................................	25	9	0.11	1	0	1	0	0	0	0
................................................................................................................................CAAAAACAGTCATG--CCAGAG.................................................................................................................................................	20	9	0.11	1	0	0	0	0	0	1
....................................................................................................................................AACAGTCATG--CCAGAGATAAA............................................................................................................................................	21	9	0.11	1	0	0	0	1	0	0
.........................................................................................................................................TCATG--CCAGAGATAAATTCTAGGAGAA.................................................................................................................................	27	9	0.11	1	0	1	0	0	0	0
..................................................................................................................................AAAACAGTCATG--CCAGAGATA..............................................................................................................................................	21	9	0.11	1	0	0	0	0	1	0
.....................................................................................................................................ACAGTCATG--CCAGAGATAAATTCTAGGA....................................................................................................................................	28	9	0.11	1	0	1	0	0	0	0
.............................................................................................................................A-GCAAAAACAGTCATG--CCAGAGATAAAT...........................................................................................................................................	28	9	0.11	1	0	0	0	0	1	0
.......................................................................................................................................AGTCATG--CCAGAGATAAATT..........................................................................................................................................	20	9	0.11	1	0	0	0	0	0	1
.................................................................................................................................AAAAACAGTCATG--CCAGAGATAAATTC.........................................................................................................................................	27	9	0.11	1	0	1	0	0	0	0
.................................................................................................................................................................................................TAAACTCAATTTTGCACGTTC.................................................................................	21	20	0.10	2	0	1	0	0	1	0
...............................................................................................................................................................................................CATAAACTCAATTTTGCACGA...................................................................................	21	20	0.10	2	0	0	0	0	2	0
................................................................................................................................................................................................ATAAACTCAATTTTGCACGTTTC................................................................................	23	13	0.08	1	1	0	0	0	0	0
.................................................................................................................................................................................................TAAACTCAATTTTGCACGTTTC................................................................................	22	13	0.08	1	0	1	0	0	0	0
A-CACAAGA--TAATCC------------------------------------------------------CAAAATT--TT--TTT................................................................................................................................................................................................................	26	16	0.06	1	0	1	0	0	0	0
..................................................................................................................................................AGAGATAAATTCTAGGAGAAT................................................................................................................................	21	16	0.06	1	0	0	0	0	1	0
.................................................................................................................................................................................................TAAACTCAATTTTGCACGTT..................................................................................	20	17	0.06	1	1	0	0	0	0	0
.................................................................................................................................................................................................TAAACTCAATTTTGCACGT...................................................................................	19	20	0.05	1	0	0	0	0	0	1
........................................................................................................................................................................ACAAAAAAAACGAAAAAAG............................................................................................................	19	20	0.05	1	0	1	0	0	0	0
...............................................................................................................................................................................................CATAAACTCAATTTTGCACGG...................................................................................	21	20	0.05	1	0	0	0	0	1	0
...............................................................................................................................................................................................CATAAACTCAATTTTGCAC.....................................................................................	19	20	0.05	1	1	0	0	0	0	0

droBip1

A-ATAACACAA-----CAAAA-TCC----------------------------------------------AAAAAT---TT--TTTTGTTTTCTATTAA-TTATTTAATTCTTAATTAATTCTAA-ACAAAAACAATGATA--ATATACATGAATTCGAGGAGACTTAAAGTAAAAACGAAAAAAACCCGCATAAACTCAATTTTGCACGTTTCAAAAAGTTTTAATTATTAAAAT-AATATTAATATTTTGTCCAAAG-ACCCTTATTTAAGATAAC---------------T	Size	Hit Count	Total Norm	Total
No Reads

droKik1

A-AGTAAAT-------------GACAAAAACTTTTTTTTATTGAACACC-----------------------------------------------------TTGTTTATTTTTTACAATTAGGCAT-ACGTAGCAAAA-TT-ATAGATGAAGAAATTAAATTGTTATAATTAAAAAACAAAAACAAGCAGCATGTACTCAGTTTTGCACCATTGAAGAAAAAATTCAAAATAAATTCATTATAAATATTTTGCCCAGAG-ACCCTTAATTTCTATGATATTTTTTATACA--TT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

A-GATAATT----------------------------------------T---------------------AACAAAG--TAA--AT-TTTTTATGTTTA-CTATTTTATTTATAACAAATGTGAA-AAAGAATCAATA-TC-ATATAAGGTAAATTCTAAAAGTTAGAAAGAAA-AA-CCAAAAAACACGCATAAACTCACTTTTGCACGTTTGAACCAAATTATTTAAATATATC-CATTTTAATATTTGGTCCGCAA-ACCCTTATTAGCCATAATTTTATTAATGCA--TT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

G-TCTACAGATTTATACAAAAACCCGGAGACTTGGTTTGGGTGAACGCTGGGTAAGCA-A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

A-GATAATC----------------------------------------A---------------------AACAAAG--TTA--ATATTTTTATGTTAA-CCATTTCATTCATAACAAATGCGAA-AAAGAAACAATA-TC-GTAT--TCTAAATTCTAAAAGTTAGAAAGAAAAAACCAGAAAAACCCGCATAAACTCACTTTTGCACGTTTTAAAAAAATTAAATAAATAAATC-CATTTTAATATTTTGTCCACAAAACCCTTATTAGCAATAACTTGATTAATGCG-GTT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

G-TTTACAGATTTATACAGAAACCCGGCGACTTGGTTTGGGTGAACGCGGGGTAAGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

T-TCCT------------------------------------------------------------------------------------------------TATTTAATTTGTAAGAAATAAACTT-AAATACCTCAA-TA-ATACAAAAAGAAATGTAAGAGAGAAAATT-AAAAACAAAAACAGAAGGCATGTACTCAGTTTTGCACCTTTTATGAAAAATTGTAAAAAAATAT-CAAATTAATATTTGGTCCAAAG-ACCCTTATTGTCTATTACAT------------TT	Size	Hit Count	Total Norm	Total
No Reads

droEug1

A-CACAA--GATAATCC------------------------------------------------------AAAAAT---TT--TTTTGTTTTATTTTGA-TTATTTAATTCTTAATAAGTTTTAA-GCAAAAACAATCATG--GCATAAATAAATTCGAGGAGAATTACGGTAAAAAC-GAAAAAACCCGCATAAACTCAATTTTGCACGTTTCTAGAAGTTTTAATTATTACAAT-AATATTAATATTTTGTCCAAAG-ACCTTTATTTGAGATAAC---------------T	Size	Hit Count	Total Norm	Total
No Reads

dm3

G-TTTATAGATTTATACAAAAGCCCGGTGACTTGGTTTGGGTGAATGCCGGGTAAGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...........TTATACAAAAGCCCGGTGACTTGG....................................................................................................................................................................................................................................................................	24	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................GCCCGGTGACTTGGTTTGGGT.............................................................................................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................CCCGGTGACTTGGTTTGGGTGAATG........................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GGTGACTTGGTTTGGGTGA...........................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...........TTATACAAAAGCCCGGTGACTTGGTT..................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................ACTTGGTTTGGGTGAATGCC......................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............TACAAAAGCCCGGTGACTTGG....................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................AAAGCCCGGTGACTTGGTTTGG...............................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................CCGGTGACTTGGTTTGGGTGAATGCCG.....................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......TAGATTTATACAAAAGCCCGGTGACT.......................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............TATACAAAAGCCCGGTGACTTGG....................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................GACTTGGTTTGGGTGAATGCCGGA...................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................TGACTTGGTTTGGGTGAATGCCGGA...................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................GGTTTGGGTGAATGCCGG....................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

G-TTTATAGATTTATACAGAAACCCGGTGACTTGGTTTGGGTGAATGCCGGGTAAGCA-CTGAAT---------ATAA--AAGG--AA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
......TAGATTTATACAGAAACC...............................................................................................................................................................................................................................................................................	18	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............TATACAGAAACCCGGTGACTTGGT...................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0

droSec2

G-TTTATAGATTTATACAGAAACCCGGTGACTTGGTTTGGGTGAATGCCGGGTAAGCA-CTGAAT---------ATAA--AAGG--AA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

AGCTTACATACATAT---------------------------------TAAACGAGTAATG----TAAATGACAAAAACTTT--TTTTTTATTGAACACC--TTGCTTATTTCTTACACTTAGGCGT-AAATAGCAAAA-TA-GAAAAAGGAGAAATCGAAAAGTAATAATTCAAAAACAAAAACCAGCGGCATGTACTTAGTTGTGCACCATTTGAGAAAAAATACA---AAATTC-ATTATTAATATTTTGTCCAGAG-ACCCTTTTTTTCTATGACATTTTTTATACATACT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.............................................................................................................................GT-AAATAGCAAAA-TA-GAAAAAG.................................................................................................................................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................TAATAATTCAAAAACAAAAACCAGCGGCA......................................................................................................	29	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

T-TTTATATTTTTTTTAA--------------------------------------------------------------------------------TA-GTAGTTAATTTGTAACAACAAGACGT-AAGTAATTAAG-TA-ATTTAAGAAGCTATAGACTA--------------G-CTAAACAAGCGGCATGTACTCAGTTTTGCACCATTTATGAAAAACTACAAAATAAATTCATTATTAATATTTTGTCCAGAG-ACCCTTATTTTTTAAGACATTTGTTATACG--TT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dmo_1710

scaffold_6500:30064219-30064369 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads