dmo_1701

Name	Class	Family	Strand
Homo6	DNA	hAT-Pegasus	+
Homo6	DNA	hAT-Pegasus	+

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GACTTCTAGAGCTGGTGCTGTTACGCATTCTGCAAGATTAAATATATATGGTACGTATGTATATATTCAAAAAAAGTAAGAAAGCTCTAGCCGAGACTGCTCGAATACGAGATTTCATGAACTCTTTGACTGCTATTTCAATAATTATTCGCTTATTTTTACAAATTTATAGGTGAGGGGTGGATATAGAGGTGAATTATAAGAAAAACCGAAATTATATAAAATACATATAAATCTACATTTAGCATTTG ************************************************((((....))))....(((((...(((..((((.(((((..((((....))))..)).))).))))....))).)))))....((((((.(((.((((((.(((((((.((......)).))))))))))))).))).)))))).......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V041 embryo	M046 female body
.....................................................................................................................................................................TTTATGGGTGAGGGGTGTA...................................................................	19	2	5	0.20	1	1	0
.................................................................................TAGCTCTAGCCGAGACTGCTCGA...................................................................................................................................................	23	1	11	0.09	1	0	1
.....................................................................................TCTAGCCGAGACTGCTCGA...................................................................................................................................................	19	0	14	0.07	1	0	1

CTGAAGATCTCGACCACGACAATGCGTAAGACGTTCTAATTTATATATACCATGCATACATATATAAGTTTTTTTCATTCTTTCGAGATCGGCTCTGACGAGCTTATGCTCTAAAGTACTTGAGAAACTGACGATAAAGTTATTAATAAGCGAATAAAAATGTTTAAATATCCACTCCCCACCTATATCTCCACTTAATATTCTTTTTGGCTTTAATATATTTTATGTATATTTAGATGTAAATCGTAAAC ************************************************((((....))))....(((((...(((..((((.(((((..((((....))))..)).))).))))....))).)))))....((((((.(((.((((((.(((((((.((......)).))))))))))))).))).)))))).......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body
.........................................................................TTCATTCTTTCGAGATCGGCTC............................................................................................................................................................	22	0	13	0.08	1	1
...................................................................................CGAGATCGGCTCTGACGAG.....................................................................................................................................................	19	0	13	0.08	1	1

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6500:29656100-29656350 -	dmo_1701	GACTTCTAGAGCTGGTGCTGTTACGCATTCTGCAAGATTAAATATATA--TGGT----ACGT-A------------------------------TGTATATATT----CAAAA----AAAGTAAGAAA-------------------------------GCTCTAGCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGACTGCTCGAATACGAGATTTCATGAACTCTTTGACTGCTA-TTTCAAT-A-------------------------------ATTATTCGCTTATTTT-TAC-AAATTTAT-----------AGGTGAGGGGTGGATATAG--AGGTGAATTATAAGAA---------------------------------------------------------------------------------------------AAACCGAAATTATATAAAATACATATAAATCTACATTTAGCATTTG
droVir3	scaffold_9478:3885-4123 +		GAAGA-------------------------------------------------GTTGTGTT-GCTTAAGCGTGCTAAAAAAAATATATATA--TGTATATA-T----AAAAA----CAAGTAAGAAG-------------------------------GTTCTAGTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGAGCTCCCGACTAGGGGATACCCTGAATCCTCTTCTTCCAA-CATCAAATGCATATATATATTCTATTTTAGAAGCTATATGCCAAGTTTGGTGACTCTTGCTCTTA-TT-----------------------------------------------AT-------------------------------------------------------------------------TTACCAA--------------AATTGCCCAAAAAACAAACCATCGATA-TCGATTTTTATCGATTG
droGri2	scaffold_15081:2488416-2488573 +		TATAA--------------------------------------------------------------------------------------------------------AAAA----CAAGTAAGAGT-------------------------------GCTGTAGTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGTGAGCTCGACTACGATGTACCCTGAACGCAGTTGTT-----------------------------------------------------AAATATAA-TCTAGTTT-TATTGAAAAATTTCCTTTAA-------AAAG------------------------------------------------------------------------------------------GTGT-------------------AAACCCAATTTATATTATATATATATATATTTTCAACTATATCTTG
droWil2	scf2_1100000004192:53-323 +		TATAA-------------------------------------------------GATTAAAT-ATGTATGTATGAAAAATAATATACATACATATGTATGTAATTTAAAGAAA----AAAGAAAAAAA----AACATTCGCTGAGGATACTTGGCAAACGCTGCAACGAGTAGAACCCGTGAAAAAAAAGCCGATTATTATATTGACTGTAACTTGTGTTATATTTATCCGATCACATTCAAATTTTGG------GATCTGGGGTTTTATATCCAATATTATCACATATGTAAATTTCATAGCATACTCCAATTTT-------------------------------------------------------------------------------------------------TATAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGTTTCTTCTA
dp5	4_group3:6989559-6989613 +		ATTTA-------------------------------------------------TAGTGGAT-A------------------------------ATCAAATACT----AAAAA----AAAGTACGGAA-------------------------------GCACAAATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGACT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2	scaffold_1725:3465-3514 +		TAAAT--------------------------------------AT-----------ACATAT-G----------------------------TATATATATACT----GGAAA----ACAGAGTGAAA-------------------------------GCTTCAGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3	scaffold_13339:2910136-2910217 -		TTATTCTAATGCTGGTGAAGTCACACATTCTGCCTATTTAAATATATA--TGGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAGCTT-TCTGTCAT-TCTACAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-------AAAT
droBip1	scf7180000394899:3275-3354 +		ACAAATAA---------------------------------AA-------------------------------------------------------------------------------AAAAAA-------------------------------GCGGTGGAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAGA-GCCGAGT--------------------------------------------------------------------------------------------------------------------------------------------TATGCTTGGAATTGAAATTAAAT---------------------------------------------------------------------------------------------AAATTTTAAAT-----------TAGCCTCCA
droKik1	scf7180000302469:1437830-1437916 +		AGTTG-------------------------------------------------TATACATTTTTTTAGACATCTTAGGGGGGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGAG--------------------------------------------------------------------------AGGAAAATAAAAAAATATATATAA-------------------AA--TTTATAACATATA----------TA-------TAAA
droFic1	scf7180000454073:2300295-2300405 +		TGATT-------------------------------------------------GTTTGCCC-G----------------------------TTTTTGTTTGGC----AACAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAACTTGAAT--------------------------GGGTTGGCCTCAGTAGTGTGT-----------------------------CAATATCGAATTTATAGACAACACACACAAACATATATCCAGAATTTG
droEle1	scf7180000491008:2201348-2201438 +		TGGCA-------------------------------------------------GT-----T-A------------------------------TGCATACATT----AAAAAAAAACAAGAAAGAAA-------------------------------GCAAACTTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAA-GCCGAAG-TTCATATACCCTTGCAG---------CTA-TTGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATT
droRho1	scf7180000767448:4918-5022 +		ATTGA------------------------------------ATATTTT--TGTC----ACAT-A------------------------------TGTATATTTA----AAAAA----CAAGAAAGGAA----A--------------------------GCTAACTTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGCGGAGCCGAAGTTGATATACCCTTGCAGAA-----TACTA-T----------------------------------------------------------------------GTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-------TTAT
droBia1	scf7180000298629:4177-4371 -		TATATGAT---------------------------------ATAGGTATC---------------------------------------------------GTT----CAGAA----ATAATTTAAAAG---T--TTTTT----CCAAGCTTGGAA---GGT---------------------------------------------TATAAGTTATTTCATATT-ATTTTACCA----CTAATTTTCT------GATCGTTACTATGGAATCT-------------------ATATGATATAGTAGTCCGATTTTAATAAATTTAAATCGAAATTTAGAACTAAATAAAAAATGTTATATCCAAGCTTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAG
droTak1	scf7180000414453:36658-36765 +		TTTAA-------------------------------------------------ATAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCAGCATTTTAT-TTC-GTATTTAT-----------AA-------------------------------------------------------------------------------------------------------AAATATGTATAATATATTTTAATAAATACTAATAATAAATAAAATATATGTAAATATGTATTTGTATTAGT
droEug1	scf7180000408120:593-668 +		TATAT-------------------------------------------------ATACAAAT-A----------------------------TATATATATATA----TATAA----GTAGAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACCGTATATACATAAAATACATAGATACATATA-------TGTA
dm3	chrX:6908816-6908938 +		AAATA---------------------------------------T--AGATTGT----AAAT-A------------------------------TAATAATAAT----AATAA----CAAGAAAGAAT-------------------------------GCTATAGTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGTTA--------------TACCATTTTCTCAGCTAATGTGA-AT-------------------------------------GCGAAATTTAATCATTT-TCCTGGGA-TATCGAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-------TATT
droSim2	2r:2530788-2530906 +		ATATG-------------------------------------------------AAAAAA-C-----------------------------------ATTCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATTTTTCAAAAATGTGGGTGGGGCATAGATAGAAATATAAATAGAAATTTACAA--------------GACTAATCAAAATGTAAACAAATATTAACACATTTTCCAAAAGTG
droSec2	scaffold_8:3642574-3642746 -		AAAAA------------------------------------------------------------------------------------------------------------------AGAGAGAAT-------------------------------GCTATAGTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGTT-GCCCGACTATCAGATACCCGTTACTCCTCCACTGTGAAGAGGAAA--------------------------------GCGAATTTTCGTAATTTTTTCTTAGA-TTT-----------CGATAG-------ATATTGGG-----------------GAATAAAATATGAGAAAATTTAAAAATTATTCAAAAATGTGGGCTTGG---------------------------------------------------------------------------------CAGTTTTGG
droYak3	v2_chrUn_001:89192-89398 -		AAGATTAA---------------------------------GTATGCAGA--CT----ACGG-A------------------------------TACATAGACG----CAAAG----CAAGTTTGTTGGCCAC--------------------------GCCCACT---------------------------------CTATCGCCCAAAACT-----------------GTCATGTCCACACTTTTGAAAACTGTTTTGATATTTTATTTAGCTTGCTTTTTTGTCTATCAGTTTCAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTCAATTCTTTTAA------------------------------------------------------------------------------------------AAAACATTATTTTAAAAAATATTTTATAAAAATAATTATTT----AAAA
droEre2	scaffold_4929:24845232-24845416 -		TTCGACAA---------------------------------GATTATATACTCT--AGAAGT-A------------------------------ATTATATATT----TAAAA----CAAGATAGAAT-------------------------------GCTATGGTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGTT-TCCCGACTATCAGATACCCGTTACTCAGCTAGTGGAA-GTGCAAACG-------------------------------AGAAATTTCAAAATTT-TAC-GAAA-TAT-----------CGGTAA-------AAAGTGGG--------------------------------------------------------------------------------------------------------------------AAAAAAATAAAATGAAAAAAATTCAA--------CATTT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

GACTTCTAGAGCTGGTGCTGTTACGCATTCTGCAAGATTAAATATATA--TGGT----ACGT-A------------------------------TGTATATATT----CAAAA----AAAGTAAGAAA-------------------------------GCTCTAGCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGACTGCTCGAATACGAGATTTCATGAACTCTTTGACTGCTA-TTTCAAT-A-------------------------------ATTATTCGCTTATTTT-TAC-AAATTTAT-----------AGGTGAGGGGTGGATATAG--AGGTGAATTATAAGAA---------------------------------------------------------------------------------------------AAACCGAAATTATATAAAATACATATAAATCTACATTTAGCATTTG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.................................................................................................................................................................TCTAGCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGACTGCTCGA................................................................................................................................................................................................................................................................................................	19	14	0.07	1	1	0	0	0	0	0

droVir3

GAAGA-------------------------------------------------GTTGTGTT-GCTTAAGCGTGCTAAAAAAAATATATATA--TGTATATA-T----AAAAA----CAAGTAAGAAG-------------------------------GTTCTAGTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGAGCTCCCGACTAGGGGATACCCTGAATCCTCTTCTTCCAA-CATCAAATGCATATATATATTCTATTTTAGAAGCTATATGCCAAGTTTGGTGACTCTTGCTCTTA-TT-----------------------------------------------AT-------------------------------------------------------------------------TTACCAA--------------AATTGCCCAAAAAACAAACCATCGATA-TCGATTTTTATCGATTG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATGCCAAGTTTGGTGACTCTTGT....................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATATATATATTCTATTTTAGAAGC..............................................................................................................................................................................................................................	27	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................TCCCGACTAGGGGATACCCTGAATC.............................................................................................................................................................................................................................................................................	25	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4
......................................................................................................................................................................TC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGAGCTCCCGACTAGGGGATACC....................................................................................................................................................................................................................................................................................	26	20	0.20	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCTTCCAA-CATCAAATGCAT....................................................................................................................................................................................................................................................	23	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATGCCAAGTTTGGTGACTC........................................................................................................................................................................................................	22	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGAAGCTATATGCCAAGTTTGGTGA...........................................................................................................................................................................................................	27	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATATATATATTCTATTTTAGAAGCT.............................................................................................................................................................................................................................	28	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTCTTA-TT-----------------------------------------------AT-------------------------------------------------------------------------TTACCAA--------------AATTG........................................	25	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATGCCAAGTTTGGTGA...........................................................................................................................................................................................................	19	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................ACCCTGAATCCTCTTCTTCCAA-CATCA...........................................................................................................................................................................................................................................................	27	16	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTA-TT-----------------------------------------------AT-------------------------------------------------------------------------TTACCAA--------------AATTGCCCAAA..................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTA-TT-----------------------------------------------AT-------------------------------------------------------------------------TTACCAA--------------AATTGCC......................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................TCAAATGCATATATATATTCTATTTTAG..................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................GTTCTAGTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGAGCTCCCGA................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTCCAA-CATCAAATGCA.....................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................GGAGCTCCCGACTAGGGGAT.......................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................AG-------------------------------GTTCTAGTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGAGCTCCC..................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATATATATATTCTATTTTAGAAG...............................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................CAAATGCATATATATATTCTATT......................................................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

TATAA--------------------------------------------------------------------------------------------------------AAAA----CAAGTAAGAGT-------------------------------GCTGTAGTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGTGAGCTCGACTACGATGTACCCTGAACGCAGTTGTT-----------------------------------------------------AAATATAA-TCTAGTTT-TATTGAAAAATTTCCTTTAA-------AAAG------------------------------------------------------------------------------------------GTGT-------------------AAACCCAATTTATATTATATATATATATATTTTCAACTATATCTTG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

TATAA-------------------------------------------------GATTAAAT-ATGTATGTATGAAAAATAATATACATACATATGTATGTAATTTAAAGAAA----AAAGAAAAAAA----AACATTCGCTGAGGATACTTGGCAAACGCTGCAACGAGTAGAACCCGTGAAAAAAAAGCCGATTATTATATTGACTGTAACTTGTGTTATATTTATCCGATCACATTCAAATTTTGG------GATCTGGGGTTTTATATCCAATATTATCACATATGTAAATTTCATAGCATACTCCAATTTT-------------------------------------------------------------------------------------------------TATAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGTTTCTTCTA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.........................................................................................................................................................................................................................................CACATTCAAATTTTGG------GATCTGGGGT...................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.20	4	0	4	0	0	0
....................................................................................................................................................................................................................................................TTTGG------GATCTGGGGTTTTATATCC..........................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.15	3	0	0	0	3	0
.....................................................................................................................................................................................................................................................TTGG------GATCTGGGGTTTTATATC...........................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.15	3	0	0	0	2	1
........................................................................................................................................................................................................................................TCACATTCAAATTTTGG------GATCTGG......................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.15	3	0	3	0	0	0
.............................................................................................................................................TGAGGATACTTGGCAAACGCTGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	7	0.14	1	0	0	0	1	0
.............................................................................................................................................TGAGGATACTTGGCAAACGCTGCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	7	0.14	1	0	1	0	0	0
............................................................................AAATAATATACATACATATGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	10	0.10	1	0	1	0	0	0
..TAA-------------------------------------------------GATTAAAT-ATGTATGTATGAAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	10	0.10	1	0	0	0	1	0
...................................................................................................................................................................................................................................................TTTTGG------GATCTGGGGTTTTATATCC..........................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	0	0	2	0
...................................................................................................................................................................................................................................................TTTTGG------GATCTGGGGTTTTATATC...........................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	0	2	0
.........................................................TAAAT-ATGTATGTATGAAAAATAATA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	11	0.09	1	0	1	0	0	0
.................................................................................................................................................................................................................................TATCCGATCACATTCAAATTTTGG------GAT..........................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	1	0
......................................................................................................................................................................................................TATATTGACTGTAACTTGTGTTATA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
..............................................................................................................................................................................................................................................TCAAATTTTGG------GATCTGGG.....................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................................ACTTGTGTTATATTTATCCGAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
......................................................................................................................................................................................................TATATTGACTGTAACTTGTGTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0
..................................................................................................................................................................................................TTATTATATTGACTGTAACTTGTGTTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................TTTCATAGCATACTCCAATT..................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0
............................................................................................................................................................................................................................................ATTCAAATTTTGG------GATCTGGG.....................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0
.............................................................................................................................................................................................GCCGATTATTATATTGACTGTAACTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................AGCATACTCCAATTTT-------------------------------------------------------------------------------------------------TATAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGT........	27	20	0.05	1	0	0	0	1	0
......................................................................................................................................................................................................TATATTGACTGTAACTTGTGTTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0
..............................................................................................................................................................................................................................................TCAAATTTTGG------GATCTGGGGTTTTAT..............................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	1	0
..............................................................................................................................................................................................................................................TCAAATTTTGG------GATCTGG......................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................TTTATATCCAATATTATCACATA............................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
..............................................................................................................................................................................................CCGATTATTATATTGACTGTAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0

dp5

ATTTA-------------------------------------------------TAGTGGAT-A------------------------------ATCAAATACT----AAAAA----AAAGTACGGAA-------------------------------GCACAAATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGACT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

Total

M022
Male-body

M040
Female-body

M059
Embryo

M062
Head

V043
Embryo

V051
Head

V112
Male-body

SRR902010
Ovary

SRR902011
Testis

SRR902012
CNS imaginal disc

No Reads

droPer2

TAAAT--------------------------------------AT-----------ACATAT-G----------------------------TATATATATACT----GGAAA----ACAGAGTGAAA-------------------------------GCTTCAGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droAna3

TTATTCTAATGCTGGTGAAGTCACACATTCTGCCTATTTAAATATATA--TGGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAGCTT-TCTGTCAT-TCTACAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-------AAAT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

ACAAATAA---------------------------------AA-------------------------------------------------------------------------------AAAAAA-------------------------------GCGGTGGAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAGA-GCCGAGT--------------------------------------------------------------------------------------------------------------------------------------------TATGCTTGGAATTGAAATTAAAT---------------------------------------------------------------------------------------------AAATTTTAAAT-----------TAGCCTCCA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AGTTG-------------------------------------------------TATACATTTTTTTAGACATCTTAGGGGGGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGAG--------------------------------------------------------------------------AGGAAAATAAAAAAATATATATAA-------------------AA--TTTATAACATATA----------TA-------TAAA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TGATT-------------------------------------------------GTTTGCCC-G----------------------------TTTTTGTTTGGC----AACAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAACTTGAAT--------------------------GGGTTGGCCTCAGTAGTGTGT-----------------------------CAATATCGAATTTATAGACAACACACACAAACATATATCCAGAATTTG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TGGCA-------------------------------------------------GT-----T-A------------------------------TGCATACATT----AAAAAAAAACAAGAAAGAAA-------------------------------GCAAACTTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAA-GCCGAAG-TTCATATACCCTTGCAG---------CTA-TTGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ATTGA------------------------------------ATATTTT--TGTC----ACAT-A------------------------------TGTATATTTA----AAAAA----CAAGAAAGGAA----A--------------------------GCTAACTTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGCGGAGCCGAAGTTGATATACCCTTGCAGAA-----TACTA-T----------------------------------------------------------------------GTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-------TTAT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TATATGAT---------------------------------ATAGGTATC---------------------------------------------------GTT----CAGAA----ATAATTTAAAAG---T--TTTTT----CCAAGCTTGGAA---GGT---------------------------------------------TATAAGTTATTTCATATT-ATTTTACCA----CTAATTTTCT------GATCGTTACTATGGAATCT-------------------ATATGATATAGTAGTCCGATTTTAATAAATTTAAATCGAAATTTAGAACTAAATAAAAAATGTTATATCCAAGCTTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TTTAA-------------------------------------------------ATAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCAGCATTTTAT-TTC-GTATTTAT-----------AA-------------------------------------------------------------------------------------------------------AAATATGTATAATATATTTTAATAAATACTAATAATAAATAAAATATATGTAAATATGTATTTGTATTAGT	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TATAT-------------------------------------------------ATACAAAT-A----------------------------TATATATATATA----TATAA----GTAGAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACCGTATATACATAAAATACATAGATACATATA-------TGTA	Size	Hit Count	Total Norm	Total
No Reads

dm3

AAATA---------------------------------------T--AGATTGT----AAAT-A------------------------------TAATAATAAT----AATAA----CAAGAAAGAAT-------------------------------GCTATAGTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGTTA--------------TACCATTTTCTCAGCTAATGTGA-AT-------------------------------------GCGAAATTTAATCATTT-TCCTGGGA-TATCGAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-------TATT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...............................................................................................................................T-------------------------------GCTATAGTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGTTA--------------TACCATTTTC..............................................................................................................................................................................................................................................................................	26	1	15.00	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	4	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................TATAGTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGTTA--------------TACCATTTTCT.............................................................................................................................................................................................................................................................................	24	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................AGTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGTTA--------------TACCATTTTCTCAGC.........................................................................................................................................................................................................................................................................	25	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................TGTGA-AT-------------------------------------GCGAAATTTAATCATT.........................................................................................................................................................................................................	23	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................TATAGTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGTTA--------------TACCATTTTCTCAGC.........................................................................................................................................................................................................................................................................	28	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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................................................................................................................A----CAAGAAAGAAT-------------------------------GCTATAGTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G...........................................................................................................................................................................................................................................................................................................	22	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................AGAAAGAAT-------------------------------GCTATAGTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAG.........................................................................................................................................................................................................................................................................................................	21	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................AAT-------------------------------GCTATAGTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGTTA--------------........................................................................................................................................................................................................................................................................................	18	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................GAAAGAAT-------------------------------GCTATAGTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAG.........................................................................................................................................................................................................................................................................................................	20	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................AAGAAT-------------------------------GCTATAGTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGTT.......................................................................................................................................................................................................................................................................................................	20	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................AAGAAT-------------------------------GCTATAGTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGT........................................................................................................................................................................................................................................................................................................	19	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................AGAAT-------------------------------GCTATAGTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGT........................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................AATAAT----AATAA----CAAGAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

ATATG-------------------------------------------------AAAAAA-C-----------------------------------ATTCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATTTTTCAAAAATGTGGGTGGGGCATAGATAGAAATATAAATAGAAATTTACAA--------------GACTAATCAAAATGTAAACAAATATTAACACATTTTCCAAAAGTG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTTACAA--------------GACTAATCAAAA.................................	22	3	0.33	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCAAAAATGTGGGT..............................................................................................	17	7	0.14	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAAAAATGTGGGT..............................................................................................	16	8	0.13	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCAAAAATGTGG................................................................................................	15	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0

droSec2

AAAAA------------------------------------------------------------------------------------------------------------------AGAGAGAAT-------------------------------GCTATAGTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGTT-GCCCGACTATCAGATACCCGTTACTCCTCCACTGTGAAGAGGAAA--------------------------------GCGAATTTTCGTAATTTTTTCTTAGA-TTT-----------CGATAG-------ATATTGGG-----------------GAATAAAATATGAGAAAATTTAAAAATTATTCAAAAATGTGGGCTTGG---------------------------------------------------------------------------------CAGTTTTGG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.................................................................................................................................................................................................................................................................................................................................................................................AGTT-GCCCGACTATCAGATACC....................................................................................................................................................................................................................................................................................	22	9	0.11	1	1	0	0	0
............................................................................................................................GAAT-------------------------------GCTATAGTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGTT-GCC...................................................................................................................................................................................................................................................................................................	21	14	0.07	1	0	0	1	0
............................................................................................................................GAAT-------------------------------GCTATAGTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGTT-GCCC..................................................................................................................................................................................................................................................................................................	22	14	0.07	1	0	1	0	0
..AAA------------------------------------------------------------------------------------------------------------------AGAGAGAAT-------------------------------GCTATAGTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA..........................................................................................................................................................................................................................................................................................................	23	19	0.05	1	0	0	1	0

droYak3

AAGATTAA---------------------------------GTATGCAGA--CT----ACGG-A------------------------------TACATAGACG----CAAAG----CAAGTTTGTTGGCCAC--------------------------GCCCACT---------------------------------CTATCGCCCAAAACT-----------------GTCATGTCCACACTTTTGAAAACTGTTTTGATATTTTATTTAGCTTGCTTTTTTGTCTATCAGTTTCAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTCAATTCTTTTAA------------------------------------------------------------------------------------------AAAACATTATTTTAAAAAATATTTTATAAAAATAATTATTT----AAAA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.....................................................................................................................................................................................................................................................TTTGAAAACTGTTTTGATATTTT................................................................................................................................................................................................................................................................................................................................................................................................................	23	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

TTCGACAA---------------------------------GATTATATACTCT--AGAAGT-A------------------------------ATTATATATT----TAAAA----CAAGATAGAAT-------------------------------GCTATGGTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGTT-TCCCGACTATCAGATACCCGTTACTCAGCTAGTGGAA-GTGCAAACG-------------------------------AGAAATTTCAAAATTT-TAC-GAAA-TAT-----------CGGTAA-------AAAGTGGG--------------------------------------------------------------------------------------------------------------------AAAAAAATAAAATGAAAAAAATTCAA--------CATTT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
......AA---------------------------------GATTATATACTCT--AGAAGT-A------------------------------AT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0

dmo_1701

scaffold_6500:29656150-29656300 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-24.6	-24.5	-24.4