ID:

dmo_1691

 Coordinate:

scaffold_6500:29255388-29255538 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-37.6 -36.8 -36.7 -36.6

Flybase annnotation

CDS [Dmoj\GI18235-cds]; exon [dmoj_GLEANR_3031:3]; intron [Dmoj\GI18235-in]

No Repeatable elements found

mature
  1. scaffold_641:511-532 +
  2. scaffold_1617:6177-6198 +
  3. scaffold_1684:4661-4682 +
  4. scaffold_1694:766-787 +
  5. scaffold_1815:5170-5191 +
  6. scaffold_2050:5371-5392 +
  7. scaffold_2597:1372-1393 +
  8. scaffold_3351:7852-7873 +
  9. scaffold_3802:2965-2986 +
  10. scaffold_4501:45998-46019 +
  11. scaffold_5653:1256-1277 +
  12. scaffold_6086:5246-5267 +
  13. scaffold_6428:28922-28943 +
  14. scaffold_6473:16906967-16906988 +
  15. scaffold_6473:16911478-16911499 +
  16. scaffold_6482:96332-96353 +
  17. scaffold_6482:564462-564483 +
  18. dmo_1691  scaffold_6500:29255406-29255427 +
  19. scaffold_6541:712978-712999 +
  20. scaffold_6680:21644956-21644977 +
  21. scaffold_291:341-362 +
  22. scaffold_1714:2344-2365 +
  23. scaffold_2660:1144-1165 +
  24. scaffold_3351:2233-2254 +
  25. scaffold_4148:4159-4180 +
  26. scaffold_4501:41448-41469 +
  27. scaffold_5280:1076-1097 +
  28. scaffold_5889:14781-14802 +
  29. scaffold_5969:245-266 +
  30. scaffold_6329:469-490 +
  31. scaffold_6329:47424-47445 +
  32. scaffold_6385:49146-49167 +
  33. scaffold_6414:49298-49319 +
  34. scaffold_6446:39994-40015 +
  35. scaffold_6482:230292-230313 +
  36. scaffold_6497:228175-228196 +
  37. scaffold_6541:243887-243908 +
  38. scaffold_6541:1435475-1435496 +
  39. scaffold_6541:2351055-2351076 +
  40. scaffold_6541:2355031-2355052 +
  41. scaffold_357:658-679 +
  42. scaffold_4047:2849-2870 +
  43. scaffold_4315:45548-45569 +
  44. scaffold_4764:958-979 +
  45. scaffold_5900:159-180 +
  46. scaffold_6482:71936-71957 +
  47. scaffold_6500:16705353-16705374 +
  48. scaffold_6500:16711938-16711959 +
  49. scaffold_6541:218724-218745 +
  50. scaffold_4016:6832-6853 +
  51. scaffold_6315:7086-7107 +
star
  1. scaffold_1884:1410-1431 -
  2. scaffold_2597:1462-1483 +
  3. scaffold_3309:321-342 +
  4. scaffold_4148:4206-4227 +
  5. scaffold_4267:3259-3280 -
  6. scaffold_4281:1005-1026 -
  7. scaffold_4281:3106-3127 -
  8. scaffold_4359:2884-2905 -
  9. scaffold_6104:4143-4164 -
  10. scaffold_6117:76322-76343 -
  11. scaffold_6317:42716-42737 +
  12. scaffold_6352:38924-38945 -
  13. scaffold_6498:368344-368365 -
  14. dmo_1691  scaffold_6500:29255496-29255517 +
  15. scaffold_6500:30994341-30994362 +
  16. scaffold_6541:243977-243998 +
  17. scaffold_6541:692658-692679 +
  18. scaffold_6541:713068-713089 +
  19. scaffold_6541:2351145-2351166 +
  20. scaffold_6541:2355121-2355142 +
  21. scaffold_3802:3055-3076 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TCTCCAGCTTCGACACGACGTCTTAGTTTGCAATCCTTGCAAGGGGGGGAGTATGTTAATGCCAGATCCCATTAACAGGATTGCTCCTCCCCCACATAGCCCGGCTGTGTTATTAACAGCACTCTGTTGATGTCAATTAACAGCGTTCTGTTAATAGTACAACCGTTGGCTCTCGTCACTTGCCTATCCTGGTATTGACACTTCTGTTCATATGTATATACATATTCAATACACTTTATACGAGCGACACA
********************************************************************........((...................(((((((.((((((((((((((.((.((((((((....)))))))).)).)))))))))))))).)))..)))).......))*********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body		 V041
embryo
 V049
head
 V056
head
...............CGACGTCTTAGTTTGCAATCCTTGC................................................................................................................................................................................................................... 25 0 1 3.00 3 3 0 0 0 0 0
..............ACGACGTCTTAGTTTGCAATCCT...................................................................................................................................................................................................................... 23 0 1 2.00 2 1 1 0 0 0 0
....................................................................CCATTAACAGGATTGCTCCTCC................................................................................................................................................................. 22 0 20 1.85 37 35 0 2 0 0 0
..............................................................................................................................................................ACAACCGTTGGCTCTCGTCACT....................................................................... 22 0 20 1.35 27 21 6 0 0 0 0
........................................................................................................................................................................................................CTTCTGTTCATATGTATATACATAT.......................... 25 0 1 1.00 1 1 0 0 0 0 0
..............ACGACGTCTTAGTTTGCAATCCTC..................................................................................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
..............ACGACGTCTTAGTTTGCAATCCTTGC................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
...............CGACGTCTTAGTTTGCAATCCTT..................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................................ACAACCGTTGGCTCTCGTCACTTG..................................................................... 24 0 20 0.85 17 17 0 0 0 0 0
...............................................................................................................................................GATTCTGGTAATAGTACAAC........................................................................................ 20 3 20 0.70 14 12 0 0 0 1 1
....................................................................................................................................................................................................................................ATACACTTTATACGAGCGACACA 23 0 18 0.61 11 11 0 0 0 0 0
................................................................................................................................................ATTCTGGTAATAGTACAAC........................................................................................ 19 2 20 0.55 11 10 0 0 0 1 0
..............................................................................................................................................................ACAACCGTTGGCTCTCGTCAC........................................................................ 21 0 20 0.55 11 10 0 0 1 0 0
..............................................................................................................................................................ACAACCGTTGGCTCTCGTCACTTGC.................................................................... 25 0 20 0.55 11 10 1 0 0 0 0
......................................................................ATTAACAGGATTGCTCCTCCC................................................................................................................................................................ 21 0 20 0.45 9 9 0 0 0 0 0
....................................................................CCATTAACAGGATTGCTCCTCCCCC.............................................................................................................................................................. 25 0 20 0.45 9 0 9 0 0 0 0
..............................................................................................................................................................ACAACCGTTGGCTCTCGTCACTTGCC................................................................... 26 0 20 0.40 8 7 1 0 0 0 0
..............................................................................................................................................................ACAACCGTTGGCTCTCGTCACTT...................................................................... 23 0 20 0.35 7 4 2 1 0 0 0
.................................................................................................................................................TTCTGGTAATAGTACAACATT..................................................................................... 21 3 20 0.35 7 6 0 0 0 1 0
....................................................................................................................................................................................................................................ATACACTTTATACGAGCGACA.. 21 0 18 0.33 6 6 0 0 0 0 0
..............ACGACGTCTTAGTTTGCAAT......................................................................................................................................................................................................................... 20 0 3 0.33 1 1 0 0 0 0 0
....................................................................CCATTAACAGGATTGCTCCTCCCCCACA........................................................................................................................................................... 28 0 20 0.25 5 5 0 0 0 0 0
..............GCGACGTCTTAGTTTGCAATCC....................................................................................................................................................................................................................... 22 1 4 0.25 1 1 0 0 0 0 0
......................TTAGTTTGCAATCCTTGCAAGGGG............................................................................................................................................................................................................. 24 0 5 0.20 1 1 0 0 0 0 0
.......................................................................TTAACAGGATTGCTCCTCCC................................................................................................................................................................ 20 0 20 0.20 4 2 2 0 0 0 0
..............................................................................................................................................................ACAACCGTTGGCTCTCGTCACTTGCCTA................................................................. 28 0 6 0.17 1 1 0 0 0 0 0
....................................................................................................................................................................................................................................ATACACTTTATACGAGCGACAC. 22 0 18 0.17 3 3 0 0 0 0 0
..............................................................................................................................................................ACAACCGTTGGCTCTCGTCACTTGCCT.................................................................. 27 0 20 0.15 3 3 0 0 0 0 0
...............................................................................................................................................................................TCACTTGCCTATCCTGGTATTG...................................................... 22 0 14 0.14 2 2 0 0 0 0 0
......................................................................................................................................................................TGGCTCTCGTCACTTGCCTATCCTGG........................................................... 26 0 8 0.13 1 0 1 0 0 0 0
.....................................................................................................................................................................................................................................TACACTTTATACGAGCGACACA 22 0 18 0.11 2 2 0 0 0 0 0
.............................................................................................................................................................................CGTCACTTGCCTATCCTGGTA......................................................... 21 0 9 0.11 1 1 0 0 0 0 0
....................................................................CCAGTAACAGGATTGCTCCTCC................................................................................................................................................................. 22 1 20 0.10 2 0 2 0 0 0 0
..............................................................................................................................TTGATGTCAATTAACAGCGTTCTGT.................................................................................................... 25 0 10 0.10 1 0 0 1 0 0 0
...................................................................CCCATTAACAGGATTGCTCCTCCC................................................................................................................................................................ 24 0 20 0.10 2 2 0 0 0 0 0
..................................................................TCCCATTAACAGGATTGCTCC.................................................................................................................................................................... 21 0 20 0.10 2 0 2 0 0 0 0
.............................................................................................................................................................TACAACCGTTGGCTCTCGTCACTTG..................................................................... 25 0 20 0.10 2 2 0 0 0 0 0
................................................................................................................................................ATTCTGGTAATAGTACAACA....................................................................................... 20 3 20 0.10 2 2 0 0 0 0 0
......................................................................ATTAACAGGATTGCTCCTCC................................................................................................................................................................. 20 0 20 0.10 2 2 0 0 0 0 0
.....................................................................CATTAACAGGATTGCTCCTCCCC............................................................................................................................................................... 23 0 20 0.10 2 2 0 0 0 0 0
....................................................................................................................................................................................TGCCTATCCTGGTATTGACGCTTCTG............................................. 26 1 12 0.08 1 1 0 0 0 0 0
...............................................................................................................................................CGTTCTGTTAATAGTACAACCGTTGGCTC............................................................................... 29 0 16 0.06 1 1 0 0 0 0 0
.....................................................................................................................................................GTTAATAGTACAACCGTTGGCTCTCG............................................................................ 26 0 17 0.06 1 1 0 0 0 0 0
...................................................................................................................................................................................................................................AATACACTTTATACGAGCGACAC. 23 0 18 0.06 1 1 0 0 0 0 0
...................................................................................................................................................................................................................................AATACACTTTATACGAGCGACA.. 22 0 18 0.06 1 1 0 0 0 0 0
......................................................................................................................................................................................................................................ACACTTTATACGAGCGACAC. 20 0 18 0.06 1 0 1 0 0 0 0
..............................................................................................................................................................................................................................TATTCAATACACTTTATACGAGCGAC... 26 0 18 0.06 1 1 0 0 0 0 0
.......................................................TTAATGCCAGATCCCATTAACAGGATTG........................................................................................................................................................................ 28 0 20 0.05 1 1 0 0 0 0 0
....................................................................CCATTAACAGGATTGCTCCT................................................................................................................................................................... 20 0 20 0.05 1 1 0 0 0 0 0
........................................................................TAACAGGATTGCTCCTCCCCCACATAGC....................................................................................................................................................... 28 0 20 0.05 1 1 0 0 0 0 0
..............................................................................................................................................................ACAACCGTTGGATCTCGTCACTTGC.................................................................... 25 1 20 0.05 1 1 0 0 0 0 0
..........................................................CTGCCAGATCCCATTAACC.............................................................................................................................................................................. 19 2 20 0.05 1 0 1 0 0 0 0
.................................................................................TGCTCCTCCCCCACATAGCCC..................................................................................................................................................... 21 0 20 0.05 1 0 1 0 0 0 0
.................................................................ATCCCATTAACAGGATTGCTCCTC.................................................................................................................................................................. 24 0 20 0.05 1 1 0 0 0 0 0
..............................................................................................................................................................................................................................TATTCAATACACTTTATACGAGC...... 23 0 20 0.05 1 0 1 0 0 0 0
...............................................................................................................................................................CAACCGTTGGCTCTAGTCACT....................................................................... 21 1 20 0.05 1 1 0 0 0 0 0
....................................................................CCATTAACAGGATTGCTCCTCCG................................................................................................................................................................ 23 1 20 0.05 1 0 1 0 0 0 0
.......................................................TTAATGCCAGATCCCATTAACAGGATTGC....................................................................................................................................................................... 29 0 20 0.05 1 1 0 0 0 0 0
..............................................................................................................................................................ACATCCGTTGGCTCTCGTCACT....................................................................... 22 1 20 0.05 1 0 1 0 0 0 0
.......................................................................TTAACAGGATTGCTCCTCCCCCACATA......................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0 0
..............................................................................................................................................................ACAACCGTTGGCTCTCGTCACTAT..................................................................... 24 2 20 0.05 1 1 0 0 0 0 0
.......................................CACTGGGGGGAGTATGGT.................................................................................................................................................................................................. 18 3 20 0.05 1 1 0 0 0 0 0
................................................................................TTGCTCCTCCCCCACATGGCCC..................................................................................................................................................... 22 1 20 0.05 1 0 1 0 0 0 0
....................................................................................................................................................................................................................................ATATACTTTATACGAGCGACAC. 22 1 20 0.05 1 0 1 0 0 0 0
......................................................................ATTAACAGGATTGCTCCTCCCCCACA........................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0
.............................GCAATCCTTGCAAGGGGGGGA......................................................................................................................................................................................................... 21 0 20 0.05 1 0 0 0 1 0 0
.................................................................................................................................................TTCTGGTAATAGTACAACA....................................................................................... 19 2 20 0.05 1 0 0 0 0 0 1
....................................................................CGATTAACAGGATTACTCCTCC................................................................................................................................................................. 22 2 20 0.05 1 0 1 0 0 0 0
......................................................................ATTAACAGGATTGCTCCTC.................................................................................................................................................................. 19 0 20 0.05 1 1 0 0 0 0 0
...............................................................................................................................................................CAACCGTTGGCTCTCGTCACTT...................................................................... 22 0 20 0.05 1 1 0 0 0 0 0
..............................................................................................................................................................ACAACCGTTGGCTCTCGGCAC........................................................................ 21 1 20 0.05 1 0 0 0 1 0 0
......................................................................AGTAACAGGATTGCTCCTCC................................................................................................................................................................. 20 1 20 0.05 1 0 1 0 0 0 0
..............................................................................................................................................GCGTTCTGTTAATAGTACAACCGT..................................................................................... 24 0 20 0.05 1 1 0 0 0 0 0
..............................................................................................................................................................ACAACCGTTGGCTCTCGTCACTTGT.................................................................... 25 1 20 0.05 1 1 0 0 0 0 0
..................................................................................GCTCCTCCCCCACATAGCC...................................................................................................................................................... 19 0 20 0.05 1 0 1 0 0 0 0
..............................................................................................................................................................ACAACCGTTGGCTCTCGTCA......................................................................... 20 0 20 0.05 1 1 0 0 0 0 0
..............................................................................................................................................................ACAACTGTTGGCTCTCGTCACT....................................................................... 22 1 20 0.05 1 1 0 0 0 0 0
....................................................................CCCTTAACAGGATTGCTCCTCCC................................................................................................................................................................ 23 1 20 0.05 1 0 1 0 0 0 0
............................TGCAATCCTTGCAAGGGGGGGAGTA...................................................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
..............................................................................................................................................................ACAACCGTAGGCTCTCGTCACTTG..................................................................... 24 1 20 0.05 1 1 0 0 0 0 0
...................................................................CCCATTAACAGGATTGCTCCTCCCCCAC............................................................................................................................................................ 28 0 20 0.05 1 1 0 0 0 0 0
..........................................................................ACAGGATTGCTCCTCCCCCAC............................................................................................................................................................ 21 0 20 0.05 1 1 0 0 0 0 0
...............................................................................................................................................................CAACCGTTGGCTCTCGTCACT....................................................................... 21 0 20 0.05 1 1 0 0 0 0 0
.............................................................................................................................................................TACAACCGTTGGCTCTCGTCACTTGCC................................................................... 27 0 20 0.05 1 1 0 0 0 0 0
....................................................................CCATTAACAGGATTGCTCC.................................................................................................................................................................... 19 0 20 0.05 1 0 1 0 0 0 0
..........................................GGGGGGGAGTATGTTAATGCCAGATC....................................................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0
...............................................................................................................................................CGTTCTGTTAATAGTACAACCGTTG................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

AGAGGTCGAAGCTGTGCTGCAGAATCAAACGTTAGGAACGTTCCCCCCCTCATACAATTACGGTCTAGGGTAATTGTCCTAACGAGGAGGGGGTGTATCGGGCCGACACAATAATTGTCGTGAGACAACTACAGTTAATTGTCGCAAGACAATTATCATGTTGGCAACCGAGAGCAGTGAACGGATAGGACCATAACTGTGAAGACAAGTATACATATATGTATAAGTTATGTGAAATATGCTCGCTGTGT
***********************************************************************........((...................(((((((.((((((((((((((.((.((((((((....)))))))).)).)))))))))))))).)))..)))).......))******************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V041
embryo
 V110
male body		 V056
head
 V049
head
..............................................................................................................................................CGCAAGACAATTATCATGTTGGCAAC................................................................................... 26 0 20 3.65 73 0 60 13 0 0 0
AGAGGTCGAAGCTGTGCTGCAGAAT.................................................................................................................................................................................................................................. 25 0 3 3.33 10 9 1 0 0 0 0
..................................................................................................................................................AGACCATTATCATGTTGTAA..................................................................................... 20 3 20 2.35 47 47 0 0 0 0 0
................................................................................................................................................TAAGACCATTATCATGTTG........................................................................................ 19 2 20 2.05 41 39 0 0 1 1 0
....................................................................................................................................................................................................................ACATATATGTATAAGTTATGTGAAAT............. 26 0 1 2.00 2 2 0 0 0 0 0
AGAGGTCGAAGCTGTGCTGCAGAA................................................................................................................................................................................................................................... 24 0 3 1.67 5 3 1 1 0 0 0
.GAGGTCGAAGCTGTGCTGCAGAA................................................................................................................................................................................................................................... 23 0 3 1.33 4 2 2 0 0 0 0
......................................................................................................................................................................................................................ATATATGTATAAGTTATGTGAAAT............. 24 0 1 1.00 1 1 0 0 0 0 0
......CGAAGCTGTGCTGCAGAATCAAACGT........................................................................................................................................................................................................................... 26 0 3 1.00 3 3 0 0 0 0 0
........................................................................................................................................................................................ATAGGACCATAACTGTGAAGACAAGT......................................... 26 0 12 1.00 12 9 0 0 3 0 0
...GGTCGAAGCTGTGCTGCAGAAT.................................................................................................................................................................................................................................. 22 0 3 0.67 2 2 0 0 0 0 0
...........................................................................................................................................................................................GGACCATAACTGTGAAGACAAGTAT....................................... 25 0 12 0.67 8 7 1 0 0 0 0
.GAGGTCGAAGCTGTGCTGCAGAAT.................................................................................................................................................................................................................................. 24 0 3 0.67 2 2 0 0 0 0 0
.......................................................................................................................................................................................GATAGGACCATAACTGTGAAGACAAG.......................................... 26 0 12 0.67 8 4 0 2 1 1 0
.............................................................................................................................................TCGCAAGACAATTATCATGTTGGCAAC................................................................................... 27 0 20 0.65 13 10 3 0 0 0 0
...................................................................................................................TGTCGTGAGACAACTACAGTTAATT............................................................................................................... 25 0 9 0.56 5 3 1 0 1 0 0
........................................................................................................................................................................................ATAGGACCATAACTGTGAAGACAAGTAT....................................... 28 0 12 0.50 6 4 0 0 2 0 0
..........................................................................................................................................................................................AGGACCATAACTGTGAAGACAAGTAT....................................... 26 0 12 0.42 5 5 0 0 0 0 0
.........................................................................................................................................................................................TAGGACCATAACTGTGAAGACAAGTAT....................................... 27 0 12 0.42 5 4 1 0 0 0 0
........................................................................................................................................................................................ATAGGACCATAACTGTGAAGACAAG.......................................... 25 0 12 0.42 5 2 0 0 3 0 0
...............................................................................................................................................CTAAGACCATTATCATGTTG........................................................................................ 20 3 20 0.40 8 8 0 0 0 0 0
................................................................................................................................................CAAGACAATTATCATGTTGGCAAC................................................................................... 24 0 20 0.35 7 4 3 0 0 0 0
..........................................................................................................................................................................................AGGACCATAACTGTGAAGACAAGT......................................... 24 0 12 0.33 4 3 0 1 0 0 0
.GAGGTCGAAGCTGTGCTGCAGA.................................................................................................................................................................................................................................... 22 0 3 0.33 1 1 0 0 0 0 0
.....TCGAAGCTGTGCTGCAGAAT.................................................................................................................................................................................................................................. 20 0 3 0.33 1 1 0 0 0 0 0
......CGAAGCTGTGCTGCAGAATCAAACGTT.......................................................................................................................................................................................................................... 27 0 3 0.33 1 1 0 0 0 0 0
......CGAAGCTGTGCTGCAGAA................................................................................................................................................................................................................................... 18 0 3 0.33 1 1 0 0 0 0 0
.CAGGTCGAAGCTGTGCTGCAGAA................................................................................................................................................................................................................................... 23 1 3 0.33 1 0 1 0 0 0 0
.....TCGAAGCTGTGCTGCAGAATCAAACGT........................................................................................................................................................................................................................... 27 0 3 0.33 1 1 0 0 0 0 0
..AGGTCGAAGCTGTGCTGCAGAA................................................................................................................................................................................................................................... 22 0 3 0.33 1 1 0 0 0 0 0
...........CTGTGCTGCAGAATCAAACGT........................................................................................................................................................................................................................... 21 0 3 0.33 1 1 0 0 0 0 0
...............................................................................................................................................................................AGTGAACGGATAGGACCATAACTGTG.................................................. 26 0 13 0.31 4 3 0 0 1 0 0
.................................................................................................................................................AAGACCATTATCATGTTGTAA..................................................................................... 21 3 20 0.30 6 6 0 0 0 0 0
.................................................................................................................................................AAGACCATTATCATGTTGT....................................................................................... 19 2 20 0.25 5 4 0 0 0 0 1
......................................................................................................CCGACACAATAATTGTCGTGAGACAAC.......................................................................................................................... 27 0 20 0.25 5 4 1 0 0 0 0
........................................................................................................................................................................CGAGAGCAGTGAACGGATAGGACCAT......................................................... 26 0 8 0.25 2 0 2 0 0 0 0
AGAGGTCGAAGCTGTGCTGCGGAA................................................................................................................................................................................................................................... 24 1 4 0.25 1 0 1 0 0 0 0
.....................................................................................................................................................................................CGGATAGGACCATAACTGTGAAGACAAG.......................................... 28 0 12 0.25 3 2 1 0 0 0 0
..........................................................................................................................................................................AGAGCAGTGAACGGATAGGACCATA........................................................ 25 0 9 0.22 2 1 0 0 1 0 0
................................................................................................................................................................TTGGCAACCGAGAGCAGTGAACGGAT................................................................. 26 0 6 0.17 1 1 0 0 0 0 0
......................................................................................................................................................................................GGATAGGACCATAACTGTGAAGACAAG.......................................... 27 0 12 0.17 2 2 0 0 0 0 0
......................................................................................................................................................................................GGATAGGACCATAACTGTGAAGACAAGT......................................... 28 0 12 0.17 2 2 0 0 0 0 0
.................................................................................................................................................................TGGCAACCGAGAGCAGTGAACGGAT................................................................. 25 0 6 0.17 1 1 0 0 0 0 0
.....................................................................................................................................................................................CGGATAGGACCATAACTGTGAAGACAAGT......................................... 29 0 12 0.17 2 0 1 0 1 0 0
...............................................................................................................................................................................AGTGAACGGATAGGACCATAACTGT................................................... 25 0 13 0.15 2 2 0 0 0 0 0
....................................................................................................................................................................................ACGGATAGGACCATAACTGTGAAGA.............................................. 25 0 13 0.15 2 1 1 0 0 0 0
....................................................................................................................................................................................ACGGATAGGACCATAACTGTGAAG............................................... 24 0 13 0.15 2 2 0 0 0 0 0
...................................................ATACAATTACGGTCTAGGGTAATTGTC............................................................................................................................................................................. 27 0 20 0.15 3 3 0 0 0 0 0
.......................................................................................................CGACACAATAATTGTCGTGAGACAAC.......................................................................................................................... 26 0 20 0.15 3 0 3 0 0 0 0
.........................................................................................................ACACAATAATTGTCGTGAGACAACT......................................................................................................................... 25 0 20 0.15 3 3 0 0 0 0 0
...............................................................................................................................................GCAAGACAATTATCATGTTGGCAAC................................................................................... 25 0 20 0.15 3 0 3 0 0 0 0
.........................CAAACGTTAGGAACGTTCCCCCCCTCAT...................................................................................................................................................................................................... 28 0 7 0.14 1 1 0 0 0 0 0
................................................................................................................................CTACAGTTAATTGTCGCAAGACAAT.................................................................................................. 25 0 8 0.13 1 0 1 0 0 0 0
.................................................................................................................................................................GGGCAACCGAGAGCAGTGAACGGAT................................................................. 25 1 8 0.13 1 1 0 0 0 0 0
........................................................................................................................................................................CGAGAGCAGTGAACGGATAGGACCATA........................................................ 27 0 8 0.13 1 1 0 0 0 0 0
................................................................................................................................................................................GTGAACGGATAGGACCATAACTGTG.................................................. 25 0 16 0.13 2 2 0 0 0 0 0
........................................................................................................................................................................CGAGAGCAGTGAACGGATAGGACCAGA........................................................ 27 1 8 0.13 1 0 1 0 0 0 0
......................................................................................................................CGTGAGACAACTACAGTTAATTGT............................................................................................................. 24 0 9 0.11 1 1 0 0 0 0 0
.....................................................................................................................TCGTGAGACAACTACAGTTAA................................................................................................................. 21 0 9 0.11 1 1 0 0 0 0 0
..................................................................................................................TTGTCGTGAGACAACTACAGTTAAT................................................................................................................ 25 0 9 0.11 1 1 0 0 0 0 0
...................................................................................................................GGTCGTGAGACAACTACAGTTAAGT............................................................................................................... 25 2 9 0.11 1 0 1 0 0 0 0
................................................................................................................................CTACAGTTAATTGTCGCAAGACATT.................................................................................................. 25 1 9 0.11 1 0 1 0 0 0 0
........................................................................................................................TGAGACAACTACAGTTAATTGT............................................................................................................. 22 0 9 0.11 1 0 1 0 0 0 0
...................................................................................................................CGTCGTGAGACAACTACAGTTAATT............................................................................................................... 25 1 9 0.11 1 0 1 0 0 0 0
.............................................................................................................................................................................GCAGTGAACGGATAGGACCATA........................................................ 22 0 9 0.11 1 0 0 0 1 0 0
...........................................................................................................................................................................GAGCAGTGAACGGATAGGACCATAA....................................................... 25 0 9 0.11 1 1 0 0 0 0 0
..........................................CCCCCCCTCATACAATTACGGTCTAG....................................................................................................................................................................................... 26 0 20 0.10 2 0 2 0 0 0 0
.......................................................................................................CGACACAATAATTGTCGTGAGACAA........................................................................................................................... 25 0 20 0.10 2 0 0 2 0 0 0
..............................................................................................................................................CGCAATACAATTATCATGTTGGCAAC................................................................................... 26 1 20 0.10 2 0 1 0 1 0 0
..............................................................................................................................................CACAAGACAATTATCATGTTGGCAAC................................................................................... 26 1 20 0.10 2 0 2 0 0 0 0
................................................................................................................................................TAAGACCATTATCATGTT......................................................................................... 18 2 20 0.10 2 2 0 0 0 0 0
..............................................................................................................................................CGAAAGACAATTATCATGTTGGCAAC................................................................................... 26 1 20 0.10 2 0 0 2 0 0 0
.....................................................................................................GCCGACACAATAATTGTCGTGAGACAA........................................................................................................................... 27 0 20 0.10 2 0 0 0 1 1 0
.........................................................CTACGGTCTAGGGTAATTGTC............................................................................................................................................................................. 21 1 20 0.10 2 0 2 0 0 0 0
............................................................................................................................................GTCGCAAGACAATTATCATGTTGGCAAC................................................................................... 28 0 20 0.10 2 2 0 0 0 0 0
.......................................................................................................CGACACAATAATTGTCGTGAGACAACT......................................................................................................................... 27 0 20 0.10 2 2 0 0 0 0 0
..............................................................................................GTATCGGGCCGACACAATAATTGTCGT.................................................................................................................................. 27 0 20 0.10 2 2 0 0 0 0 0
..................................................CATACAATTACGGTCTAGGGTAATTGTC............................................................................................................................................................................. 28 0 20 0.10 2 2 0 0 0 0 0
.........................................................TTACGGTCTAGGGTAATTGGC............................................................................................................................................................................. 21 1 20 0.10 2 0 2 0 0 0 0
...........................................................................................................................................................................................GGACCATAACTGTGAAGACAAGTGT....................................... 25 1 12 0.08 1 0 1 0 0 0 0
........................................................................................................................................................................................ATAGGACCATAACTGTGAAGACAAGTA........................................ 27 0 12 0.08 1 1 0 0 0 0 0
..........................................................................................................................................................................................AGGACCATAACTGTGAAGACACTTAT....................................... 26 2 12 0.08 1 1 0 0 0 0 0
...........................................................................................................................................................................................GGACCATAACTGTGAAGACAAGTA........................................ 24 0 12 0.08 1 1 0 0 0 0 0
...........................................................................................................................................................................................GGACCATAACGGTGAAGACAAGTAT....................................... 25 1 12 0.08 1 0 0 1 0 0 0
.......................................................................................................................................................................................GATAGGACCATAACTGTGAAGACAA........................................... 25 0 12 0.08 1 1 0 0 0 0 0
...........................................................................................................................................................................................GGACCATAACTGTGAAGACAAGT......................................... 23 0 12 0.08 1 0 0 0 1 0 0
...................................................................................................................................................................................AACGGATAGGACCATAACTGTGAAGAC............................................. 27 0 12 0.08 1 1 0 0 0 0 0
............................................................................................................................................................................................................................GTATAAGTTATGTGAAATATGCTCGCT.... 27 0 12 0.08 1 1 0 0 0 0 0
.........................................................................................................................................................................................TAGGACCATAACTGTGAAGACAAGTA........................................ 26 0 12 0.08 1 1 0 0 0 0 0
.........................................................................................................................................................................................TAGGACCATAACTGTGAAGACAATT......................................... 25 1 12 0.08 1 0 1 0 0 0 0
.........................................................................................................................................................................................TAGGACCATAACTGTGAAGACAAGT......................................... 25 0 12 0.08 1 1 0 0 0 0 0
......................................................................................................................................................................................AGATAGGACCATAACTGTGAAGACAAGT......................................... 28 1 12 0.08 1 1 0 0 0 0 0
........................................................................................................................................................................................ATAGGACCATAACTGTGAAGACAAGTATA...................................... 29 0 12 0.08 1 0 1 0 0 0 0
..............................................................................................................................................................................................CCATAACTGTGAAGACAAGTAT....................................... 22 0 12 0.08 1 0 1 0 0 0 0
...................................................................................................................................................................................AACGGATAGGACCATAACTGTGAAG............................................... 25 0 13 0.08 1 1 0 0 0 0 0
...............................................................................................................................................................................AGTGAAAGGATAGGACCATAACTGT................................................... 25 1 13 0.08 1 1 0 0 0 0 0
.........................................................................................................................................................................................TAGGACCATAACTGTGAAG............................................... 19 0 14 0.07 1 1 0 0 0 0 0
.................................................................................................................................................................................TGAACGGATAGGACCATAACTGTG.................................................. 24 0 16 0.06 1 0 1 0 0 0 0
...............................................................................................................................................................................AGTGAACGGAAAGGACCATAACTGT................................................... 25 1 17 0.06 1 1 0 0 0 0 0
..................................................................................................................................................................................................................................GTTATGTGAAATATGCTCGCTGTGT 25 0 18 0.06 1 1 0 0 0 0 0
................................TAGGAACGTTCCCCCCCTCATACAATTAC.............................................................................................................................................................................................. 29 0 20 0.05 1 1 0 0 0 0 0
.......................................GTTCCCCCCCTCATACAATTACGGT........................................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
........................................TTCCCCCCCTCATACAATTACGGT........................................................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0 0
........................................................................................................GACACAATAATTGTCGTGAGACAAC.......................................................................................................................... 25 0 20 0.05 1 0 0 0 1 0 0
...............................................................................................................................................GCAAGACAATTATGATGTTGGCAAC................................................................................... 25 1 20 0.05 1 1 0 0 0 0 0
................................................................CTAGGGTAATTGTCCTAACGAGGAG.................................................................................................................................................................. 25 0 20 0.05 1 1 0 0 0 0 0
........................................................................................................GACACAATAATTGTCGTGAGACAA........................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0 0
.....................................................................................GGAGGGGGTGTATCGGGCCGACACAA............................................................................................................................................ 26 0 20 0.05 1 1 0 0 0 0 0
.............................................................................................................................................TCGCAAGACAATTATCATGCTGGCAAC................................................................................... 27 1 20 0.05 1 0 1 0 0 0 0
.............................................................................................................................................TCGCAAGACAATTATCATGTTG........................................................................................ 22 0 20 0.05 1 0 1 0 0 0 0
...........................................................CCGGTCTAGGGTAATTGTCCT........................................................................................................................................................................... 21 1 20 0.05 1 1 0 0 0 0 0
...............................................................................................................................................GCAAGACAATTATCATGTCGGCAA.................................................................................... 24 1 20 0.05 1 1 0 0 0 0 0
.....................................................................................................................................................................................CGGATAGGACCATAACTGTGA................................................. 21 0 20 0.05 1 0 1 0 0 0 0
................................................................................................................................................TAAGACCATTATCATGTTGC....................................................................................... 20 3 20 0.05 1 1 0 0 0 0 0
......................................................................................................CCGACACAATAATTGTCGTGAGACAA........................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0
..........................................................TACGGTCTAGGGTAATTGGC............................................................................................................................................................................. 20 1 20 0.05 1 0 1 0 0 0 0
................................TGGGAACGTTCCCCCCCTCATACAAT................................................................................................................................................................................................. 26 1 20 0.05 1 1 0 0 0 0 0
......................................................................................................................................................AATTATCCTGTTGGCAAC................................................................................... 18 1 20 0.05 1 0 0 1 0 0 0
.............................................................................................TGTATCGGGCCGACACAATAATTGT..................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
......................................................................................................ACGACACAATAATTGTCGTGAGACAA........................................................................................................................... 26 1 20 0.05 1 1 0 0 0 0 0
........................................................................................................GACACAATAATTGTCGTGAGACAACT......................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0
.......................................................AATTACGGTCTAGGGTAATTGGC............................................................................................................................................................................. 23 1 20 0.05 1 0 1 0 0 0 0
..............................................................................................GTATCGGGCCGACACAATAATTGT..................................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0 0
..........................................................TACGGTCTAGGGTAATTGTCC............................................................................................................................................................................ 21 0 20 0.05 1 1 0 0 0 0 0
.....................................................................................................................................................AAATTATCATGTTGGCAAC................................................................................... 19 1 20 0.05 1 1 0 0 0 0 0
.........................................................................................................ACACAATCATTGTCGTGAGACAACT......................................................................................................................... 25 1 20 0.05 1 0 0 1 0 0 0
................................TAGGAACGTTCCCCCCCTCATACAAT................................................................................................................................................................................................. 26 0 20 0.05 1 1 0 0 0 0 0
..............................................................................................................................................CGCAAGACAATTATCATGTTGTCAAC................................................................................... 26 1 20 0.05 1 0 1 0 0 0 0
...........................................................................................................................................TGTCGCAAGACAATTATCATGTTGGCAAC................................................................................... 29 0 20 0.05 1 0 1 0 0 0 0
.....................................................ACAATTACGGTCTAGGGTAATTGTCCT........................................................................................................................................................................... 27 0 20 0.05 1 0 1 0 0 0 0
.....................................................................................GGAGGGGGTGTATCGGGCCGACACAAT........................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0 0
.......................................................AATTCCGGTCTAGGGTAATTGTC............................................................................................................................................................................. 23 1 20 0.05 1 0 0 1 0 0 0
.........................................................TTACGGTCTAGGGTAATTGTCCA........................................................................................................................................................................... 23 1 20 0.05 1 0 1 0 0 0 0
.....................................................ACAATTACGGTCTAGGGTAATTGC.............................................................................................................................................................................. 24 1 20 0.05 1 1 0 0 0 0 0
.......................................................................................................CCACACAATAATCGTCGAGAGACAAC.......................................................................................................................... 26 3 20 0.05 1 0 0 1 0 0 0
..........................................................................TGTCCTAACGAGGAGGGGGTGTAT......................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0 0
...............................TTAGGAACGTTCCCCCCCT......................................................................................................................................................................................................... 19 0 20 0.05 1 1 0 0 0 0 0
..............................................................................................................................................CGCAAGCCCATTCTCATGTTGGCAAC................................................................................... 26 3 20 0.05 1 0 0 1 0 0 0
...................................AAACGTTCCCCCCCTCATACAATTACGGT........................................................................................................................................................................................... 29 1 20 0.05 1 1 0 0 0 0 0
.....................................................................................................AAAGACACAATAATTGTCGTGAGACAAC.......................................................................................................................... 28 3 20 0.05 1 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6500:29255338-29255588 + dmo_1691 TCTCCAGCTTC-----------------G---ACACGACG------TC--TTAGT--------------TTGCAA------TCCTTGCAAGG-GGGGGAGTATGTTAATGCCAGATCC--CATTAACAGGATTGCTCCTC-CCCCACATAGCCCGGCTGTGTTATTAACAGCACTCTGTTGATGTCAATTAACAGCGTTCTGTTAATAGTACAACCGTTGGCTCTCGTCACTTGCCTATCCTGGTATTGACACTTCTGTTCATATGTATATACATATTCAATACACTTTATACGAGCGACACA
droVir3 scaffold_12954:1477888-1477944 - TGCTACTA---------------------TACG---GACG------TCGCTTACG--------------TCCCTTCT----CCAGCACAAGG-GGGTCAGTATATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004967:3176867-3176941 + TT---------------------------------------------------------------------G-------CACTCCTGCAAGG-GGGGGAGCATGTTTATGCCCAAACGGGCAACACAAGGGTTATCGCTCTCCCCACAAAAC-------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 Unknown_group_109:17188-17239 - CACCCCAT-------------------T----------------------ATACT--------------TTGCA-------ATCCTGCAAGGGGGGGGAGGATGTTCAGGTCAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_179:49580-49631 + CACCCCAT-------------------T----------------------ATACT--------------TTGCA-------ATCCTGCAAGGGGGGGGAGGATGTTCAGGTCAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000393194:3297-3373 + CGCATAGC---------------------TAGC---GACG------AGGGATCTG--------------TTGCAACCCGAGCGATTGCAAGG-GGGGGAGAATGTTTAGGTGAGGAGC--CGT------------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000298533:363-432 - TTTCCCGAG-CGAAGGACTTCTAATATT----------------------TTGCT--------------GCG-------TATCCTCGCAAGG-GGGGGAGAATGTTCACGCCAGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000454020:5139-5184 - T--------------------------------------------------------------------TTGCAACGCTCGCCCTCGCAAGG-GGGGGAGAATGTTCGCGCCAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000491267:38254-38284 + GTTCATAT---------------------------------------------------------------------------------------AT----ATATATATATATAATAC--ATT------------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000776610:37610-37719 - AGCTCAGCCTT-----------------G---GGGTGGCTCCTTTTAGGCACTTGCTCCCTTTCTTAATATGCCACTCTCCCCATTGCGAGG-GGGGGAGAATATTCATGTCGAA-----CAAGAAAAAGATTGCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000410470:13609-13665 - TCTCCTG-------------------------------------------AAGTT--------------TTGCTACGGTGGTCCTCGCAAGG-GGGGGAGAATGTTCACGCCAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000407820:23838-23916 - TCACCAAC-------------------CGTAGC---GACG------AGGGAGCTG--------------TTGCAACCCGAGTGATTGCAAGG-GGGGCGGGATGTTTAGGTGAGGGGC--CAT------------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chr2RHet:3111586-3111613 + --------------------------------------------------------------------------------------GCAAGG-GGGGAAGAATGTTCACGCCAGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_1852:3595-3622 + --------------------------------------------------------------------------------------GCAAGG-GGGGGAGAATGTTCACGCCAGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 v2_chr2L_random_028:947514-947565 - TCCTAAA--------------------------------------------------------------TTGCAAGTAGTCCTCTTGCAAGG-GGGGGAGAATGTTCATGCCGAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
TCTCCAGCTTC-----------------G---ACACGACG------TC--TTAGT--------------TTGCAA------TCCTTGCAAGG-GGGGGAGTATGTTAATGCCAGATCC--CATTAACAGGATTGCTCCTC-CCCCACATAGCCCGGCTGTGTTATTAACAGCACTCTGTTGATGTCAATTAACAGCGTTCTGTTAATAGTACAACCGTTGGCTCTCGTCACTTGCCTATCCTGGTATTGACACTTCTGTTCATATGTATATACATATTCAATACACTTTATACGAGCGACACASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................................CGACG------TC--TTAGT--------------TTGCAA------TCCTTGC.......................................................................................................................................................................................................................2513.003300000
..................................ACGACG------TC--TTAGT--------------TTGCAA------TCCT..........................................................................................................................................................................................................................2312.002100010
.....................................................................................................................C--CATTAACAGGATTGCTCCTC-C.................................................................................................................................................................22201.85373500002
..................................................................................................................................................................................................................ACAACCGTTGGCTCTCGTCACT.......................................................................22201.35272100060
............................................................................................................................................................................................................................................................CTTCTGTTCATATGTATATACATAT..........................2511.001100000
..................................ACGACG------TC--TTAGT--------------TTGCAA------TCCTC.........................................................................................................................................................................................................................2411.001100000
..................................ACGACG------TC--TTAGT--------------TTGCAA------TCCTTGC.......................................................................................................................................................................................................................2611.001100000
...................................CGACG------TC--TTAGT--------------TTGCAA------TCCTT.........................................................................................................................................................................................................................2311.001100000
..................................................................................................................................................................................................................ACAACCGTTGGCTCTCGTCACTTG.....................................................................24200.85171700000
........................................................................................................................................................................................................................................................................................ATACACTTTATACGAGCGACACA23180.61111100000
..................................................................................................................................................................................................................ACAACCGTTGGCTCTCGTCAC........................................................................21200.55111010000
..................................................................................................................................................................................................................ACAACCGTTGGCTCTCGTCACTTGC....................................................................25200.55111000010
.........................................................................................................................ATTAACAGGATTGCTCCTC-CC................................................................................................................................................................21200.459900000
.....................................................................................................................C--CATTAACAGGATTGCTCCTC-CCCC..............................................................................................................................................................25200.459000090
..................................................................................................................................................................................................................ACAACCGTTGGCTCTCGTCACTTGCC...................................................................26200.408700010
..................................................................................................................................................................................................................ACAACCGTTGGCTCTCGTCACTT......................................................................23200.357400021
........................................................................................................................................................................................................................................................................................ATACACTTTATACGAGCGACA..21180.336600000
..................................ACGACG------TC--TTAGT--------------TTGCAA------T.............................................................................................................................................................................................................................2030.331100000
.....................................................................................................................C--CATTAACAGGATTGCTCCTC-CCCCACA...........................................................................................................................................................28200.255500000
..................................................TTAGT--------------TTGCAA------TCCTTGCAAGG-GG................................................................................................................................................................................................................2450.201100000
..........................................................................................................................TTAACAGGATTGCTCCTC-CC................................................................................................................................................................20200.204200020
..................................................................................................................................................................................................................ACAACCGTTGGCTCTCGTCACTTGCCTA.................................................................2860.171100000
........................................................................................................................................................................................................................................................................................ATACACTTTATACGAGCGACAC.22180.173300000
..................................................................................................................................................................................................................ACAACCGTTGGCTCTCGTCACTTGCCT..................................................................27200.153300000
...................................................................................................................................................................................................................................TCACTTGCCTATCCTGGTATTG......................................................22140.142200000
..........................................................................................................................................................................................................................TGGCTCTCGTCACTTGCCTATCCTGG...........................................................2680.131000010
.........................................................................................................................................................................................................................................................................................TACACTTTATACGAGCGACACA22180.112200000
.................................................................................................................................................................................................................................CGTCACTTGCCTATCCTGGTA.........................................................2190.111100000
..................................................................................................................................................................................TTGATGTCAATTAACAGCGTTCTGT....................................................................................................25100.101000001
....................................................................................................................CC--CATTAACAGGATTGCTCCTC-CC................................................................................................................................................................24200.102200000
...................................................................................................................TCC--CATTAACAGGATTGCTCC.....................................................................................................................................................................21200.102000020
.................................................................................................................................................................................................................TACAACCGTTGGCTCTCGTCACTTG.....................................................................25200.102200000
.........................................................................................................................ATTAACAGGATTGCTCCTC-C.................................................................................................................................................................20200.102200000
........................................................................................................................CATTAACAGGATTGCTCCTC-CCC...............................................................................................................................................................23200.102200000
...................................................................................................................................................................................................CGTTCTGTTAATAGTACAACCGTTGGCTC...............................................................................29160.061100000
.........................................................................................................................................................................................................GTTAATAGTACAACCGTTGGCTCTCG............................................................................26170.061100000
.......................................................................................................................................................................................................................................................................................AATACACTTTATACGAGCGACAC.23180.061100000
.......................................................................................................................................................................................................................................................................................AATACACTTTATACGAGCGACA..22180.061100000
..........................................................................................................................................................................................................................................................................................ACACTTTATACGAGCGACAC.20180.061000010
..................................................................................................................................................................................................................................................................................TATTCAATACACTTTATACGAGCGAC...26180.061100000
........................................................................................................TTAATGCCAGATCC--CATTAACAGGATTG.........................................................................................................................................................................28200.051100000
.....................................................................................................................C--CATTAACAGGATTGCTCCT....................................................................................................................................................................20200.051100000
...........................................................................................................................TAACAGGATTGCTCCTC-CCCCACATAGC.......................................................................................................................................................28200.051100000
....................................................................................................................................TGCTCCTC-CCCCACATAGCCC.....................................................................................................................................................21200.051000010
..................................................................................................................ATCC--CATTAACAGGATTGCTCCTC-..................................................................................................................................................................24200.051100000
..................................................................................................................................................................................................................................................................................TATTCAATACACTTTATACGAGC......23200.051000010
.....................................................................................................................C--CATTAACAGGATTGCTCCTC-CG................................................................................................................................................................23200.051000010
........................................................................................................TTAATGCCAGATCC--CATTAACAGGATTGC........................................................................................................................................................................29200.051100000
..........................................................................................................................TTAACAGGATTGCTCCTC-CCCCACATA.........................................................................................................................................................27200.051100000
..................................................................................................................................................................................................................ACAACCGTTGGCTCTCGTCACTAT.....................................................................24200.051100000
.........................................................................................................................ATTAACAGGATTGCTCCTC-CCCCACA...........................................................................................................................................................26200.051100000
.......................................................................GCAA------TCCTTGCAAGG-GGGGGA............................................................................................................................................................................................................21200.051010000
.........................................................................................................................ATTAACAGGATTGCTCCTC-..................................................................................................................................................................19200.051100000
...................................................................................................................................................................................................................CAACCGTTGGCTCTCGTCACTT......................................................................22200.051100000
..................................................................................................................................................................................................GCGTTCTGTTAATAGTACAACCGT.....................................................................................24200.051100000
..................................................................................................................................................................................................................ACAACCGTTGGCTCTCGTCACTTGT....................................................................25200.051100000
.....................................................................................................................................GCTCCTC-CCCCACATAGCC......................................................................................................................................................19200.051000010
..................................................................................................................................................................................................................ACAACCGTTGGCTCTCGTCA.........................................................................20200.051100000
......................................................................TGCAA------TCCTTGCAAGG-GGGGGAGTA.........................................................................................................................................................................................................25200.051100000
....................................................................................................................CC--CATTAACAGGATTGCTCCTC-CCCCAC............................................................................................................................................................28200.051100000
.............................................................................................................................ACAGGATTGCTCCTC-CCCCAC............................................................................................................................................................21200.051100000
...................................................................................................................................................................................................................CAACCGTTGGCTCTCGTCACT.......................................................................21200.051100000
.................................................................................................................................................................................................................TACAACCGTTGGCTCTCGTCACTTGCC...................................................................27200.051100000
.....................................................................................................................C--CATTAACAGGATTGCTCC.....................................................................................................................................................................19200.051000010
..........................................................................................GG-GGGGGAGTATGTTAATGCCAGATC..........................................................................................................................................................................................26200.051100000
...................................................................................................................................................................................................CGTTCTGTTAATAGTACAACCGTTG...................................................................................25200.051100000
droVir3
TGCTACTA---------------------TACG---GACG------TCGCTTACG--------------TCCCTTCT----CCAGCACAAGG-GGGTCAGTATATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
TGCTACTA---------------------TACG---GACG------TCGCTTACG--------------T.........................................................................................................................................................................................................................................26181.4426002010001000000000000000066200000050111000000000000000000000000
.....CTA---------------------TACG---GACG------TCGCTTACG--------------TCC.......................................................................................................................................................................................................................................23200.7014003000000000000000000002106100000000010000000000000000000000000
TGCTACTA---------------------TACG---GACG------TCGCTTA..........................................................................................................................................................................................................................................................23190.6813002010001000000000000000140100000002001000000000000000000000000
....ACTA---------------------TACG---GACG------TCGCTTACG--------------TC........................................................................................................................................................................................................................................23200.5010000000200000000000000000000710000000000000000000000000000000000
TGCTACTA---------------------TACG---GACG------TCGC.............................................................................................................................................................................................................................................................20200.408000010100000000000000000011000000022000000000000000000000000000
TGCTACTA---------------------TACG---GACG------TCGCTTACG--------------..........................................................................................................................................................................................................................................25180.336000010002000000000000000021000000000000000000000000000000000000
TGCTACTA---------------------TACG---GACG------TCGCTTACG--------------TC........................................................................................................................................................................................................................................27180.336001000000000000000000000030000000011000000000000000000000000000
TGCTACTA---------------------TACG---GACG------TCGCTTACG--------------TCCC......................................................................................................................................................................................................................................29180.285004000000000000000000000010000000000000000000000000000000000000
....ACTA---------------------TACG---GACG------TCGCTTACG--------------T.........................................................................................................................................................................................................................................22200.204000000000000000000000000000400000000000000000000000000000000000
TGCTACTA---------------------TACG---GACG------TCGCTT...........................................................................................................................................................................................................................................................22200.204000000000000000000000000301000000000000000000000000000000000000
....ACTA---------------------TACG---GACG------TCGCTTACG--------------TCCCT.....................................................................................................................................................................................................................................26200.204000000000000000000000000000400000000000000000000000000000000000
TGCTACTA---------------------TACG---GACG------TCGCTTACG--------------TCC.......................................................................................................................................................................................................................................28180.173000000000000000000000000001100000010000000000000000000000000000
TGCTACTA---------------------TACG---GACG------TCGCTTAC.........................................................................................................................................................................................................................................................24190.163001000000000000000000001001000000000000000000000000000000000000
TGCTACTA---------------------TACG---GACG------TCGCTTAT.........................................................................................................................................................................................................................................................24190.163000000000000000000000000011000000001000000000000000000000000000
TGCTACTA---------------------TACG---GACG------TCGCT............................................................................................................................................................................................................................................................21200.153000010000000000000000000000000000000011000000000000000000000000
....ACTA---------------------TACG---GACG------TCGCTTACG--------------TCC.......................................................................................................................................................................................................................................24200.153000000000010000000000000000200000000000000000000000000000000000
....ACTA---------------------TACG---GACG------TCGCTTACG--------------TCCC......................................................................................................................................................................................................................................25200.153001000000000000000000000000200000000000000000000000000000000000
.....CTA---------------------TACG---GACG------TCGCTTACG--------------TCCCT.....................................................................................................................................................................................................................................25200.102000000000000000000000000001000000000100000000000000000000000000
TGCTACTA---------------------TACG---GACG------TCGCTTACG--------------TTT.......................................................................................................................................................................................................................................28180.061000000000000000000000000010000000000000000000000000000000000000
TGCTACTA---------------------TACG---GACG------TCGCTTACG--------------TCTA......................................................................................................................................................................................................................................29180.061000000000000000000000000000000000010000000000000000000000000000
TGCTACTA---------------------TACG---GACG------TCGCTTATT--------------..........................................................................................................................................................................................................................................25190.051000000000000000000000000001000000000000000000000000000000000000
.GCTACTA---------------------TACG---GACG------TCGCTTA..........................................................................................................................................................................................................................................................22190.051001000000000000000000000000000000000000000000000000000000000000
TGCTACTA---------------------TACG---GACG------TCGCTTACG--------------TAA.......................................................................................................................................................................................................................................28190.051000000000000000000000000000000000000001000000000000000000000000
TGCTACTA---------------------TACG---GACG------TCGCTTACG--------------TA........................................................................................................................................................................................................................................27190.051000000000000000000000000010000000000000000000000000000000000000
TGCTACTA---------------------TACG---GACG------TCGCTTACT--------------..........................................................................................................................................................................................................................................25190.051000000000000000000000000010000000000000000000000000000000000000
TGCTACTA---------------------TACG---GACG------TCGCTTACC--------------C.........................................................................................................................................................................................................................................26200.051001000000000000000000000000000000000000000000000000000000000000
.....CTA---------------------TACG---GACG------TCGCTTACG--------------TCCCTA....................................................................................................................................................................................................................................26200.051000000000000000000000000001000000000000000000000000000000000000
...TACTA---------------------TACG---GACG------TCGCTTACG--------------T.........................................................................................................................................................................................................................................23200.051000010000000000000000000000000000000000000000000000000000000000
...................................................TACG--------------TCCCTTCT----CCAGCACAAGG-GGGT..............................................................................................................................................................................................................27200.051001000000000000000000000000000000000000000000000000000000000000
.....CTA---------------------TACG---GACG------TCGCTTACG--------------..........................................................................................................................................................................................................................................20200.051000000000000000000000000000100000000000000000000000000000000000
TGCTACTA---------------------TACG---GACG------TCG..............................................................................................................................................................................................................................................................19200.051000000000000000000000001000000000000000000000000000000000000000
......TA---------------------TACG---GACG------TCGCTTAC.........................................................................................................................................................................................................................................................18200.051001000000000000000000000000000000000000000000000000000000000000
TGCTACTA---------------------TACG---GACG------TCGCTTATT--------------A.........................................................................................................................................................................................................................................26200.051000000000000000000000000001000000000000000000000000000000000000
.....CTA---------------------TACG---GACG------TCGCTTACG--------------TCCC......................................................................................................................................................................................................................................24200.051000000000000000000000000001000000000000000000000000000000000000
TGCTACTA---------------------TACG---GACG------TCCA.............................................................................................................................................................................................................................................................20200.051000010000000000000000000000000000000000000000000000000000000000
.........................................................................TTCT----CCAGCACAAGG-GGGTCA............................................................................................................................................................................................................21200.051000000000000000000000000010000000000000000000000000000000000000
.......A---------------------TACG---GACG------TCGCTTACG--------------TCCCT.....................................................................................................................................................................................................................................23200.051000000000000000000000000001000000000000000000000000000000000000
........................................................................CTTCT----CCAGCACAAGG-GGGTCAG...........................................................................................................................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
.................................................CTTACG--------------TCCCTTCT----CCAGCACAAGG-GGG...............................................................................................................................................................................................................28200.051000000000000000000000000000000000010000000000000000000000000000
TGCTACTA---------------------TACG---GACG------TCGCTTC..........................................................................................................................................................................................................................................................23200.051000010000000000000000000000000000000000000000000000000000000000
.....CTA---------------------TACG---GACG------TCGCTTACG--------------TT........................................................................................................................................................................................................................................22200.051000000000000000000000000001000000000000000000000000000000000000
....ACTA---------------------TACG---GACG------TCGCTTACG--------------TCCCTT....................................................................................................................................................................................................................................27200.051000000000000000000000000000100000000000000000000000000000000000
....ACTA---------------------TACG---GACG------TCGCTTACG--------------..........................................................................................................................................................................................................................................21200.051000000000000000000000000000100000000000000000000000000000000000
.....CTA---------------------TACG---GACG------TCGCTTACG--------------TTTT......................................................................................................................................................................................................................................24200.051000000000000000000000000001000000000000000000000000000000000000
......TA---------------------TACG---GACG------TCGCTTACG--------------T.........................................................................................................................................................................................................................................20200.051100000000000000000000000000000000000000000000000000000000000000
...TACTA---------------------TACG---GACG------TCGCTTACG--------------TCC.......................................................................................................................................................................................................................................25200.051000000000000000000000000000000000000100000000000000000000000000
droWil2
TT---------------------------------------------------------------------G-------CACTCCTGCAAGG-GGGGGAGCATGTTTATGCCCAAACGGGCAACACAAGGGTTATCGCTCTCCCCACAAAAC-------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................................................................................................AGCATGTTTATGCCCAAACGGGCAAC...................................................................................................................................................................................26170.18301020
..................................................................................TCCTGCAAGG-GGGGGAGCATGTTTA...................................................................................................................................................................................................25200.10201010
.T---------------------------------------------------------------------G-------CACTCCTGCAAGG-GGGGGAGCA.........................................................................................................................................................................................................24200.10201010
.....................................................................................TGCAAGG-GGGGGAGCATGTTT....................................................................................................................................................................................................21200.10202000
..................................................................................................AGCATGTTTATGCCCAAACGGGCAACA..................................................................................................................................................................................27170.06101000
..................................................................................................AGCATGTTTATGCCCAAACGGG.......................................................................................................................................................................................22190.05101000
...........................................................................................G-GGGGGAGCATGTTTATG.................................................................................................................................................................................................18200.05100010
..................................................................................TCCTGCAAGG-GGGGGAGCT.........................................................................................................................................................................................................19200.05100010
..................................................................................TCCTGCAAGG-GGGGGAGCAT........................................................................................................................................................................................................20200.05100010
.................................................................................CTCCTGCAAGG-GGGGGAGCATGTTT....................................................................................................................................................................................................25200.05101000
..................................................................................TCCTGCAAGG-GGGGGAGCATGTT.....................................................................................................................................................................................................23200.05101000
...........................................................................................G-GGGGGAGCATGTTTATGCCC..............................................................................................................................................................................................21200.05101000
..................................................................................TCCTGCAAGG-GGGGGAGCATGT......................................................................................................................................................................................................22200.05101000
...............................................................................CACTCCTGCAAGG-GGGGGAGCA.........................................................................................................................................................................................................22200.05101000
..........................................................................................................TATGCCCAAACGGGCAACACAAGGGG...........................................................................................................................................................................26200.05100010
........................................................................................AAGG-GGGGGAGCATGTTTATG.................................................................................................................................................................................................21200.05101000
...................................................................................CCTGCAAGG-GGGGGAGCATGT......................................................................................................................................................................................................21200.05101000
dp5
CACCCCAT-------------------T----------------------ATACT--------------TTGCA-------ATCCTGCAAGGGGGGGGAGGATGTTCAGGTCAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..CCCCAT-------------------T----------------------ATACT--------------TTGCA-------ATCCTGC.......................................................................................................................................................................................................................24184.898808141000200
..CCCCAT-------------------T----------------------ATACT--------------TTGCA-------ATCCTG........................................................................................................................................................................................................................23183.285905310000500
..CCCCAT-------------------T----------------------ATACT--------------TTGCA-------ATCCT.........................................................................................................................................................................................................................22180.67120930000000
..CCCCAT-------------------T----------------------ATACT--------------TTGCA-------ATCCTGCA......................................................................................................................................................................................................................25170.591001000000000
...CCCAT-------------------T----------------------ATACT--------------TTGCA-------ATCCTGC.......................................................................................................................................................................................................................23180.561001000000000
..CCCCAT-------------------T----------------------ATACT--------------TTGCA-------ATCC..........................................................................................................................................................................................................................21180.2850310100000
.....CAT-------------------T----------------------ATACT--------------TTGCA-------ATCCTGC.......................................................................................................................................................................................................................21180.2240100000300
..CCCCAT-------------------T----------------------ATACT--------------TTGCA-------ATC...........................................................................................................................................................................................................................20180.1730300000000
..CCCCAT-------------------T----------------------ATACT--------------TTGCA-------ATCCTGCAA.....................................................................................................................................................................................................................26160.1320200000000
...CCCAT-------------------T----------------------ATACT--------------TTGCA-------ATCCTG........................................................................................................................................................................................................................22180.1120200000000
...CCCAT-------------------T----------------------ATACT--------------TTGCA-------ATCCTGCA......................................................................................................................................................................................................................24170.0610100000000
..CCCCAT-------------------T----------------------ATACT--------------TTGCA-------ATCCTGCT......................................................................................................................................................................................................................25180.0610100000000
..................................................ATACT--------------TTGCA-------ATCCTGCAAGG...................................................................................................................................................................................................................21200.0510100000000
......AT-------------------T----------------------ATACT--------------TTGCA-------ATCCTGC.......................................................................................................................................................................................................................20200.0510100000000
...................................................TACT--------------TTGCA-------ATCCTGCAAGGGGGG...............................................................................................................................................................................................................24200.0510100000000
droPer2
CACCCCAT-------------------T----------------------ATACT--------------TTGCA-------ATCCTGCAAGGGGGGGGAGGATGTTCAGGTCAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......T-------------------T----------------------ATACT--------------TTGCA-------ATCCTGCAAGG...................................................................................................................................................................................................................23200.204040000
.......T-------------------T----------------------ATACT--------------TTGCA-------ATCCTGC.......................................................................................................................................................................................................................19200.051010000
.......T-------------------T----------------------ATACT--------------TTGCA-------ATCCTGCAAG....................................................................................................................................................................................................................22200.051010000
.......T-------------------T----------------------ATACT--------------TTGCA-------ATCCTGCAAGGGG.................................................................................................................................................................................................................25200.051010000
.......T-------------------T----------------------ATACT--------------TTGCA-------ATCCTGCAA.....................................................................................................................................................................................................................21200.051010000
...........................T----------------------ATACT--------------TTGCA-------ATCCTGCAAGG...................................................................................................................................................................................................................22200.051010000
.......................................................................GCA-------ATCCTGCAAGGGGGGG..............................................................................................................................................................................................................19200.051010000
droBip1
CGCATAGC---------------------TAGC---GACG------AGGGATCTG--------------TTGCAACCCGAGCGATTGCAAGG-GGGGGAGAATGTTTAGGTGAGGAGC--CGT------------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
TTTCCCGAG-CGAAGGACTTCTAATATT----------------------TTGCT--------------GCG-------TATCCTCGCAAGG-GGGGGAGAATGTTCACGCCAGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
T--------------------------------------------------------------------TTGCAACGCTCGCCCTCGCAAGG-GGGGGAGAATGTTCGCGCCAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
GTTCATAT---------------------------------------------------------------------------------------AT----ATATATATATATAATAC--ATT------------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
AGCTCAGCCTT-----------------G---GGGTGGCTCCTTTTAGGCACTTGCTCCCTTTCTTAATATGCCACTCTCCCCATTGCGAGG-GGGGGAGAATATTCATGTCGAA-----CAAGAAAAAGATTGCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TCTCCTG-------------------------------------------AAGTT--------------TTGCTACGGTGGTCCTCGCAAGG-GGGGGAGAATGTTCACGCCAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
TCACCAAC-------------------CGTAGC---GACG------AGGGAGCTG--------------TTGCAACCCGAGTGATTGCAAGG-GGGGCGGGATGTTTAGGTGAGGGGC--CAT------------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
--------------------------------------------------------------------------------------GCAAGG-GGGGAAGAATGTTCACGCCAGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................................................................GCAAGG-GGGGAAGAATGTTCA...................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000
........................................................................................AAGG-GGGGAAGAATGTTCACGCC...............................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000
..............................................................................................GGGAAGAATGTTCACGCCAGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................AGG-GGGGAAGAATGTTCACGGT...............................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
......................................................................................GCAAGG-GGGGAAGAATGTTCACGC................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.........................................................................................AGG-GGGGAAGAATGTTGT...................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
droSec2
--------------------------------------------------------------------------------------GCAAGG-GGGGGAGAATGTTCACGCCAGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................................................................................GGGGAGAATGTTCACGCCAGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------21200.0511000
droYak3
TCCTAAA--------------------------------------------------------------TTGCAAGTAGTCCTCTTGCAAGG-GGGGGAGAATGTTCATGCCGAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................................................................TTGCAAGG-GGGGGAGAATG.......................................................................................................................................................................................................19160.06101000000000

Generated: 05/18/2015 at 01:04 AM