dmo_1687

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATGCAGGATCATTGACATACTTTGTTTGTACTGAAGAGCAGATCATATGGTCAGGAGTATTTAAGACTACACAAGATCTGGCAAAAAATTTGAAAAATATCATAGAGCATTATTCAGTAAATGAATGTACACTGGAAGACATTTTTTTAAAATTCGAAAAACATTCAAAATCAATCTTACATTCGACATCGGGTTCCCAAAACTACGTTTAAGTAAACTTTCTAACCAATTTTGAAAATACAACTATTTA ***************************************************************************************************************************..........(((....((((((........))))))..))).........*************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	V056 head	V110 male body	V049 head
........................................AGATCATATGGTCAGGAGT................................................................................................................................................................................................	19	0	1	1.00	1	1	0	0	0
........................................................................................................................................................ATTCGAAAAACATTCAAAATCAAT...........................................................................	24	0	1	1.00	1	1	0	0	0
..................TACTTTGTTTGTACTGAAGAGCAG.................................................................................................................................................................................................................	24	0	1	1.00	1	1	0	0	0
.............................................................................................................................ATGTACACTGGAAGACATT...........................................................................................................	19	0	1	1.00	1	0	0	1	0
..................................................................................................................................................................................................TTCCCAAAACTACGTTTAAGCAAACTT..............................	27	1	1	1.00	1	1	0	0	0
......................................................................................................................................................................................TTCGACATCGGGTTCCCAA..................................................	19	0	1	1.00	1	1	0	0	0
..................................................................................................................................................TTTAAAATTCGAAAAACATTCAAA.................................................................................	24	0	1	1.00	1	1	0	0	0
...........................................TTATATGGTCAGGGGTATT.............................................................................................................................................................................................	19	2	1	1.00	1	0	1	0	0
.................................................................GACTCCACAAGGTATGGCAA......................................................................................................................................................................	20	3	6	0.17	1	0	0	0	1
...................ACGCTGTTAGTACTGAAGA.....................................................................................................................................................................................................................	19	3	17	0.06	1	0	0	0	1

GTACGTCCTAGTAACTGTATGAAACAAACATGACTTCTCGTCTAGTATACCAGTCCTCATAAATTCTGATGTGTTCTAGACCGTTTTTTAAACTTTTTATAGTATCTCGTAATAAGTCATTTACTTACATGTGACCTTCTGTAAAAAAATTTTAAGCTTTTTGTAAGTTTTAGTTAGAATGTAAGCTGTAGCCCAAGGGTTTTGATGCAAATTCATTTGAAAGATTGGTTAAAACTTTTATGTTGATAAAT *************************************************************************..........(((....((((((........))))))..))).........***************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V041 embryo	V110 male body	V049 head
.....................................................................TGTGTTCTAGACCGTTTTTTA.................................................................................................................................................................	21	0	1	1.00	1	1	0	0
..................................................................................................................................GTGATCTTCTGCAAAAGAAT.....................................................................................................	20	3	7	0.14	1	0	1	0
.............................................TATGCCAGTCGTCACAAAT...........................................................................................................................................................................................	19	3	13	0.08	1	0	0	1

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6500:29245565-29245815 +	dmo_1687	CATGCAGGATCATTGACATACTTTGTTTGTACTGAAGAGCA---GATCATATGGTCAGGAGTATTTAAGACTACACAAGA---TCTGGCAAAAAATTTGAAAAATATCATAGAGCATTATTCAGTAAATGAATGTACACTGGAAGACATTTTTTTAAAATTCGAAAAACATTCAAAATCAATCTTACATTCGACATCGGGTT---------------------C------CCAAAACTACGTTTAAGTAAACTTTCTAACCAATTTTGAAAATACAACTATTTA
droVir3	scaffold_12723:722652-722862 +		CATGCTGGCACATTAACCTATTTTGTACGCACAGATGATCAC---ATCCTTTGGTCGAATGTATTTAAGATAGCAGACCAATATCTGGGGGATAGTCTTAGCGATCTAGTCGAATATTATTCGGTAAATGAGTGTACACTCGAAGACATATTTTTGAAATTCGAGAGACAATCAAAATCATTG------TCAAATTCGGGTT---------------------C------AGAAAACTATGTTTGAG-------------------------------------
droGri2	scaffold_15252:4262761-4262979 +		CATGCTGGAACTTTAACATATATTGTACAAACCGATCAGCGAA---TACTTTGGTCGAAGGTCTTCGACGTTTTGGAGTCCTATCTGTCTGACAAGCTCAATGACCTCGTTGAGTATTATTCGGTGAATGAGTGTACTTTGGAAGATATATTTCTAAAGTTCGAGAGACAAGCCAAATCACTG------TCACTTTCCGGTT---------------------C------GGAAAACTATGTCTGAGCGCACCTT-----------------------------
droWil2	scf2_1100000004577:20448-20612 -		CATGCTGGCACACTAACCTACTTTGTTAGCACTCAGGATCATA---TCCTTTGGTCAAATGTTTTTAAAATAACTGAAGAATATTTGTCCTCGAAATTATCACATATTGTCGATGATTATTCGGTGAATGAGTGCACACTGGAGGATATATTTCTCAAATTCGACAAA--------------------------------------------------------------------------------------------------------------------
dp5	4_group4:5941566-5941741 -		CATGCCGGAACCCTAACCTACTTTGTTAGCACCCAGGAGAACTTGGTCTATTGGTCGAGGGTGTTTAGGATAACCGAGGACCATCTGACCGACAGATTGGGCCACATCGTGGCGGACTACTCGCTGAATGAGTGCACTTTGGAAGATATTTTTCTCAAATTCGACAAAAAATCGAA------------------------------------------------------------------------------------------------------------
droPer2	scaffold_16:962650-962825 +		CATGCCGGAACCCTAACCTACTTTGTTAGCACCCAGGAGAACTTGGTCTATTGGTCGAGGGTGTTTAGGATAACCGAGGACCATCTGACCGACAGATTGGGCCACATCGTGGCGGACTACTCGCTGAATGAGTGCACTTTGGAAGATATTTTTCTCAAATTCGACAAAAAATCGAA------------------------------------------------------------------------------------------------------------
droAna3	scaffold_12916:11990711-11990925 -		CATGCAGGGACTCTCACTTACTTTGTGGGTACTCAGGAGAGTATAGTCCTGTGGTCGCATGTGTTCAAGATAACCGAAGATAACCTAACCGACCGGTTGGGCCATATCGTAGCAGATTATTCAGTCAACGAGTGCACGCTCGAGGATATTTTTCTAAAATTCGAGAAACAATCCAAATCGCAA------TCAACTTCAAATCAATCATCGGTTCAACAAAA---------------------------------------------------------------
droBip1	scf7180000396769:340909-341102 -		CATGCAGGCACGCTCACTTACTTTGTGGGCACCCAGGAGAGTATAGTCCTTTGGTCGCACGTGTTCAAGATAACTGAAGACAACTTAACCGAGCGGCTAGGCCACATCGTAGCGGACTACTCGGTGAACGAGTGCACGCTCGAGGACATTTTCCTCAAGTTCGATAAACAAGCCAAATCGCAA------TCAACGTCGAG------------------------------------------------------------------------------------
droKik1	scf7180000302236:170728-170932 -		CATGCCGGCACTCTTACGTACTTCGTAAGCATACAGGAAACCGTAATCCAGTGGTCGAATGTGTTCAAGATAACGGAAGATTATTTGGCCGATCGGCTGGGGGACATTGTTGAGGATTACTCTGTGAACGAGTGCACGCTTGAGGATATTTTCCTCAAGTTCGACAAACAGGATAAGTCCCAA------TCAACGTCACGCCAATCATCGG-------------------------------------------------------------------------
droFic1	scf7180000453925:202123-202301 -		CACGCTGGCACACTTACCTACTTTGTGGGCACACAGGAGAGTATAGTCCACTGGTCGGATGTGTTTAAGATAACCGGGGATTACTTAGATAATCGGTTAAGCGATCTGGTCGCAGATTATTCTGTGAACGAATGTACCCTGGAGGATATTTTCCTCAAGTTCGAAAAGCAGTCGAAATC---------------------------------------------------------------------------------------------------------
droEle1	scf7180000491338:1401768-1401946 +		CATGCCGGCACACTCACCTACTTTGTGAGCACCCAGGAAAGTGCAGTCCAATGGTCGGATGTGTTTAAGATAGCGGAGGACTACCTGACCGACCGGCTAGGTGACCTCGTGGCGGACTATTCGGTAAACGAGTGCACCTTGGAGGACATCTTTCTCAAACACGAGAAGCAGGCCAAGTC---------------------------------------------------------------------------------------------------------
droRho1	scf7180000780107:288413-288604 -		CATGCCGGCACCCTCACCTACTTTGTGAGCACCCAGGACAGCATAGTCCTCTGGTCGGATGTGTTTAAAATAGCGGAGGAGTACTTGGCCGATCGGCTAAGTGACCTCGTGGCGGACTATTCGCTCAACGAGTGCACCTTGGAGGATATTTTTCTCAAATTTGAAAAACAGGCAAAATCACAA------TCGACGTCG--------------------------------------------------------------------------------------
droBia1	scf7180000302408:2536443-2536622 -		CATGCCGGCACCCTCACCTACTTCGTAGGCACCCAGGAGAACGTGGTCCTCTGGTCGGACGTGTTCAAGATAGCTGAGGACTATCTGGGCGATCGGTTAAGCGACCTCGTGGCGGACTATTCGGTGAACGAGTGCACCCTGGAGGATATTTTTCTCAAGTACGAGAAGGAGTCAAAGTCA--------------------------------------------------------------------------------------------------------
droTak1	scf7180000416008:62641-62882 +		CATGCCGGCACCCTCACCTACTTCGTAAGCACCCAGGAGAACATAGTCCTCTGGTCGGACGTCTTTAAAATAGCAGAAGACTACTTGGCCGATCGGTTGAGTGACCTCGTGGCAGACTATTCTGTCAACGAGTGCACCCTGGAGGATATTTTTCTCAAGTACGAGAAGGAGTCACACTCAAAA------GCAACGTCACGTCAGAGCTCCGTGCAGCGAAGTCCGGAAATCGGAAACTATGTATAAGT------------------------------------
droEug1	scf7180000409452:361632-361836 +		CATGCCGGAACGCTCACTTACTTCGTAGGGACCCAGGAGAATATAATTCTCTGGTCGGACGTTTTCAAGATTTCAGAGGACTATCTCACCGATCGGTTAAGTGCCCTCGTAGCGGACTATTCGGTGAACGAGTGCACACTCGAGGATATATTTCTTAAATTTGAAAAAGAAGCGAATTCGAGA------TCACCGTCACGACAAACCTCGG-------------------------------------------------------------------------
dm3	chr2L:13790065-13790274 +		CATGCCGGCACACTCACCTACTTTGTTAGCACGCAGGAGAGTGTGGTCCTTTGGTCAAGTGTTTTCAAGATAGCTGAGGAATATCTGGGCGATCGCTTAAGCGCTCTCGTGGCCGACTATTCGGTGAACGAGTGCACACTCGAGGATATTTTCCTCAAGTTCGAGAGAGAGGCGAAATCACAA------TCGACGTCACGTCAAACCTCCGTGCAA--------------------------------------------------------------------
droSim2	2l:13375524-13375733 +		CATGCCGGCACGCTCACCTACTTCGTTAGCACGCAGGAGAGTGTGGTCCTTTGGTCGAGTGTTTTCAAGATAGCTGAGGACTATCTGGGCGATCGCTTGCGCGATCTCGTGGCCGATTATTCGGTGAACGAGTGCACCCTCGAGGACATTTTCCTCAAGTTCGAGAGAGAGGCGAAATCACAA------TCGGCATCACGTCAAACCTCCGTGCAA--------------------------------------------------------------------
droSec2	scaffold_3:55646-55855 +		CATGCCGGCACGCTCACCTACTTCGTTAGCACGCAGGAGAGTGTGGTCCTTTGGTCGAGTGTTTTCAAGATAGCTGAGGACTATCTGGGCGATCGCTTGCGCGATCTCGTGGCCGATTATTCGGTGAACGAGTGCACCCTCGAGGACATTTTCCTCAAGTTCGAGAGAGAGGCGAAATCACAA------TCGGCGTCACGTCAAACCTCCGTGCAA--------------------------------------------------------------------
droYak3	2L:10201744-10201981 +		CATGCCGGCACCCTCACCTACTTTGTAAGCACGCAGGAGAGCGTGGTCCTCTGGTCGAATGTTTTCAAAATAGCGGACGACTATCTGGGCGATCGCTTAAGCGATCTCGTAGCCGACTATTCGGTGAACGAGTGCACCCTGGAGGATATTTTTCTCAAGTTTGATAGGGAGGCGAAATCACAA------TCGGCGTCACGTCAAACATCCGTACAACGAAGTCCGGAAA---GTAGCTACGTTTAGG-------------------------------------
droEre2	scaffold_4929:11675840-11676077 -		CATGCCGGCACCCTCACCTACTATGTAAGCACACAGGAGAGCGTGATCCTCTGGTCGAATGTTTTCAAAATAGCGGAGGACTATCTGGGCAATCGCTTAACCGATCTCGTAGCCGACTATTCGGTGAACGAGTGCACCCTTGAGGATATTTTTCTGAAGTTTGACAGGGAGGCGAAATCACAA------TCAGCGTCACGTCAAACATCCGTACAACGAAATCCTGAAA---GTAACTATGTTTAGG-------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

CATGCAGGATCATTGACATACTTTGTTTGTACTGAAGAGCA---GATCATATGGTCAGGAGTATTTAAGACTACACAAGA---TCTGGCAAAAAATTTGAAAAATATCATAGAGCATTATTCAGTAAATGAATGTACACTGGAAGACATTTTTTTAAAATTCGAAAAACATTCAAAATCAATCTTACATTCGACATCGGGTT---------------------C------CCAAAACTACGTTTAAGTAAACTTTCTAACCAATTTTGAAAATACAACTATTTA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
........................................A---GATCATATGGTCAGGAGT..............................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................ATTCGAAAAACATTCAAAATCAAT......................................................................................................	24	1	1.00	1	1	0	0	0	0	0
..................TACTTTGTTTGTACTGAAGAGCA---G...............................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................ATGTACACTGGAAGACATT......................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
............................................................................................................................................................................................TTCGACATCGGGTT---------------------C------CCAA..................................................	19	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................TTTAAAATTCGAAAAACATTCAAA............................................................................................................	24	1	1.00	1	1	0	0	0	0	0

droVir3

CATGCTGGCACATTAACCTATTTTGTACGCACAGATGATCAC---ATCCTTTGGTCGAATGTATTTAAGATAGCAGACCAATATCTGGGGGATAGTCTTAGCGATCTAGTCGAATATTATTCGGTAAATGAGTGTACACTCGAAGACATATTTTTGAAATTCGAGAGACAATCAAAATCATTG------TCAAATTCGGGTT---------------------C------AGAAAACTATGTTTGAG-------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..............................................TCCTTTGGTCGAATGTATTTAAGATA....................................................................................................................................................................................................................	26	1	4.00	4	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................TAGCGATCTAGTCGAATATTATTCGG................................................................................................................................................................	26	1	4.00	4	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................ATAGTCTTAGCGATCTAGTCG............................................................................................................................................................................	21	1	4.00	4	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................TTTGGTCGAATGTATTTAAGA......................................................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................TAAGATAGCAGACCAATATCTGGGGGA................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................GATGATCAC---ATCCTTTGGTCG...................................................................................................................................................................................................................................	21	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................TAGCAGACCAATATCTGGGGG.................................................................................................................................................................................................	21	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................AATTCGGGTT---------------------C------AGAAAACTAT............................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................TACGCACAGATGATCAC---ATCC...........................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................ACACTCGAAGACATATTTTTGAAATT...........................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................TTCGGGTT---------------------C------AGAAAACTATGTTTG.......................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................TTGGTCGAATGTATTTAAGAT.....................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................TTCGGTAAATGAGTGTACACTCGAAGA..........................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................TTCGGTAAATGAGTGTACACT................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................GAATATTATTCGGTAAATGAGTGT.....................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................TGTACGCACAGATGATCAC---ATCCTT.........................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................AAATCATTG------TCAAATTCGGGT...................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................GAAGACATATTTTTGAAATTCGAGAGAC...................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................TTTGTACGCACAGATGATCAC---ATCCT..........................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................CAATCAAAATCATTG------TCAAATTCGGGT...................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................GCAGACCAATATCTGGGGGATAGTCT..........................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................TAGTCTTAGCGATCTAGTCGAATATTAT....................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................TCTGGGGGATAGTCTTAGCGA....................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................GTACGCACAGATGATCAC---A..............................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................CTTTGGTCGAATGTATTTAAGATAGCA.................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................TAGCGATCTAGTCGAATATTATTCGT................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............AACCTATTTTGTACGCACAGA.........................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................GATCAC---ATCCTTTGGTCGAATGTATT...........................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................TATCTGGGGGATAGTCTTAGCGATC..................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................ATATTATTCGGTAAATGAGTG......................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................AGTCTTAGCGATCTAGTC.............................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................ATATTTTTGAAATTCGAGAG.....................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................TCGGTAAATGAGTGTACACTCGAAGAC.........................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................TCAAAATCATTG------TCAAATTCGGGT...................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............AACCTATTTTGTACGCACAGATG.......................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................TTTTGAAATTCGAGAGAC...................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................AGTGTACACTCGAAGACATATT....................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............TTAACCTATTTTGTACGCACAGATGA......................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TACACTCGAAGACATATTTTT.................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................ATCTGGGGGATAGTCTTAGCGA....................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................GGGATAGTCTTAGCGATCTAG...............................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................CCAATATCTGGGGGATAGTC...........................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
...................................................................................................................................................................AGAGACAATCAAAATCATTG------...............................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................ATCAC---ATCCTTTGGTCGAATG...............................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................TATTTTGTACGCACAGATGATCAC---A..............................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................ATAGCAGACCAATATCTGGG...................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................TTTTGAAATTCGAGAGACAATCAAAA...........................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........ACATTAACCTATTTTGTACGC..............................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................TAGCAGACCAATATCTGGGGGATAGT............................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................ATAGTCTTAGCGATCTAGTCGA...........................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................TTTGTACGCACAGATGATCAC---ATCCTTT........................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................TTTGAAATTCGAGAGACAAT................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................TTTGGTCGAATGTATTTAAGATAGCA.................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................GTATTTAAGATAGCAGACCAA...........................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................AGTGTACACTCGAAGACATAT.....................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................GACATATTTTTGAAATTCGAG.......................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................TGGTCGAATGTATTTAAGATA....................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................TGGTCGAATGTATTTAAGAT.....................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................TTTGTACGCACAGATGATCAC---ATCC...........................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

CATGCTGGAACTTTAACATATATTGTACAAACCGATCAGCGAA---TACTTTGGTCGAAGGTCTTCGACGTTTTGGAGTCCTATCTGTCTGACAAGCTCAATGACCTCGTTGAGTATTATTCGGTGAATGAGTGTACTTTGGAAGATATATTTCTAAAGTTCGAGAGACAAGCCAAATCACTG------TCACTTTCCGGTT---------------------C------GGAAAACTATGTCTGAGCGCACCTT-----------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
..................................................................................................................................AGTGTACTTTGGAAGATATATTT...................................................................................................................................	23	1	1.00	1	0	1

droWil2

CATGCTGGCACACTAACCTACTTTGTTAGCACTCAGGATCATA---TCCTTTGGTCAAATGTTTTTAAAATAACTGAAGAATATTTGTCCTCGAAATTATCACATATTGTCGATGATTATTCGGTGAATGAGTGCACACTGGAGGATATATTTCTCAAATTCGACAAA--------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.................................................................................................TATCACATATTGTCGATGATTATTCGGT...............................................................................................................................................................	28	1	4.00	4	0	4	0	0	0
.............TAACCTACTTTGTTAGCACTCAGGATCA...................................................................................................................................................................................................................................................	28	1	3.00	3	0	3	0	0	0
.......................................................................AACTGAAGAATATTTGTCCT.................................................................................................................................................................................................	20	1	3.00	3	0	0	3	0	0
.................................................................................................................TGATTATTCGGTGAATGAGTGCACACT................................................................................................................................................	27	1	3.00	3	0	0	0	1	2
................................................................................................................................TGAGTGCACACTGGAGGATATATTTC..................................................................................................................................	26	1	3.00	3	0	2	0	0	1
.................................................................................................TATCACATATTGTCGATGATTATTCGG................................................................................................................................................................	27	1	3.00	3	0	3	0	0	0
.................................................................................TATTTGTCCTCGAAATTATCACATAT.................................................................................................................................................................................	26	1	2.00	2	0	2	0	0	0
...............................................................................................................................ATGAGTGCACACTGGAGGA..........................................................................................................................................	19	1	2.00	2	0	0	2	0	0
.....................................................................................TGTCCTCGAAATTATCACATATTGTCGA...........................................................................................................................................................................	28	1	2.00	2	0	2	0	0	0
..............................................................................................................................AATGAGTGCACACTGGAGG...........................................................................................................................................	19	1	2.00	2	0	0	2	0	0
...............................................................................................................GATGATTATTCGGTGAATGAGTG......................................................................................................................................................	23	1	2.00	2	0	0	2	0	0
......................................TCATA---TCCTTTGGTCAAATGTTTTTAAAA......................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0
..............................................................................................................................AATGAGTGCACACTGGAGGATATATT....................................................................................................................................	26	1	1.00	1	0	0	1	0	0
......................................................................TAACTGAAGAATATTTGTCCT.................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
....................................................................................................................................TGCACACTGGAGGATATATTTCTCAAAT............................................................................................................................	28	1	1.00	1	0	1	0	0	0
...........................................................................................................................................TGGAGGATATATTTCTCAAATTCGACA......................................................................................................................	27	1	1.00	1	0	1	0	0	0
........................................................................................CCTCGAAATTATCACATATTGTCGAT..........................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0
...............................................................................................................GATGATTATTCGGTGAATGAGT.......................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
...........................................................................................CGAAATTATCACATATTGTCGATGAT.......................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0
.......................................................................AACTGAAGAATATTTGTCCTCGAAAT...........................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0
.............................................................................................................................GAATGAGTGCACACTGGAG............................................................................................................................................	19	1	1.00	1	0	0	1	0	0
....................................................................................................................TTATTCGGTGAATGAGTGCACACTGG..............................................................................................................................................	26	1	1.00	1	0	1	0	0	0
....................................................................................TTGTCCTCGAAATTATCAC.....................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0
................................................................................................................ATGATTATTCGGTGAATGAGTG......................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
.......................................................................................................ATATTGTCGATGATTATTCGGT...............................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
..................................................................AAAATAACTGAAGAATATTTGTCCT.................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0
.............TAACCTACTTTGTTAGCACTCAGGA......................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
..................................................................................................................GATTATTCGGTGAATGAGTGCACACTGGA.............................................................................................................................................	29	1	1.00	1	0	0	1	0	0
............................................................................................................................TGAATGAGTGCACACTGGAGG...........................................................................................................................................	21	1	1.00	1	0	0	1	0	0
........................................................................................................................TCGGTGAATGAGTGCACACTGGAG............................................................................................................................................	24	1	1.00	1	0	1	0	0	0
...............ACCTACTTTGTTAGCACTCAGGAT.....................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0
..........................TAGCACTCAGGATCATA---TCCTTTGG......................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
........................GTTAGCACTCAGGATCATA---TCCTTTGGT.....................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0
........CACACTAACCTACTTTGTTAGCACTCAG........................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0
......................................................................................GTCCTCGAAATTATCACATATTGTCGAT..........................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0
.....TGGCACACTAACCTACTTTGTTAGCAC............................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0
.................................................................................................TATCACATATTGTCGATGATTAT....................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0
................................................................................................................ATGATTATTCGGTGAATGAGT.......................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
..............AACCTACTTTGTTAGCACTCAGGATCA...................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0
.........................................................................................................ATTGTCGATGATTATTCGG................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
................................................................................ATATTTGTCCTCGAAATTAT........................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0
....CTGGCACACTAACCTACTTTGTTAGCAC............................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0
...........................................................................................................TGTCGATGATTATTCGGTGAATGAGTG......................................................................................................................................................	27	1	1.00	1	0	1	0	0	0
......................TTGTTAGCACTCAGGATCATA---TCCTT.........................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
..................................................................................................................GATTATTCGGTGAATGAGTGCACA..................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
.................................................................TAAAATAACTGAAGAATATTTGTCCTCGA..............................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0
.....................................................................................................................TATTCGGTGAATGAGTGCACACTGG..............................................................................................................................................	25	1	1.00	1	0	1	0	0	0
..TGCTGGCACACTAACCTACTTTGT..................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0
.......................................................................................................................TTCGGTGAATGAGTGCACACTG...............................................................................................................................................	22	1	1.00	1	0	0	1	0	0
.....................................................................ATAACTGAAGAATATTTGT....................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
............................................................................................................................TGAATGAGTGCACACTGGAGGATATAT.....................................................................................................................................	27	1	1.00	1	0	1	0	0	0
.............................................................................................................................GAATGAGTGCACACTGGAGG...........................................................................................................................................	20	1	1.00	1	0	0	1	0	0

dp5

CATGCCGGAACCCTAACCTACTTTGTTAGCACCCAGGAGAACTTGGTCTATTGGTCGAGGGTGTTTAGGATAACCGAGGACCATCTGACCGACAGATTGGGCCACATCGTGGCGGACTACTCGCTGAATGAGTGCACTTTGGAAGATATTTTTCTCAAATTCGACAAAAAATCGAA------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.................CTACTTTGTTAGCACCCAGGA......................................................................................................................................................................................................................................................	21	1	2.00	2	0	1	0	0	1	0	0	0	0	0
.................................................................................CATCTGACCGACAGATTGGGC......................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................CGACAGATTGGGCCACATCGTGG............................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................CGGACTACTCGCTGAATGAGT.......................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................TGTTAGCACCCAGGAGAACTTGGT.............................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................GACAGATTGGGCCACATCGTGGCGGAC.......................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0
...............................................................TTTAGGATAACCGAGGACCATCTGACC..................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................GAGGACCATCTGACCGACAGATTGGG.......................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

CATGCCGGAACCCTAACCTACTTTGTTAGCACCCAGGAGAACTTGGTCTATTGGTCGAGGGTGTTTAGGATAACCGAGGACCATCTGACCGACAGATTGGGCCACATCGTGGCGGACTACTCGCTGAATGAGTGCACTTTGGAAGATATTTTTCTCAAATTCGACAAAAAATCGAA------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...............................................................TTTAGGATAACCGAGGAC...........................................................................................................................................................................................................	18	1	2.00	2	2	0	0	0	0	0
..............................................................GTTTAGGATAACCGAGGACCATCTGACC..................................................................................................................................................................................................	28	1	2.00	2	2	0	0	0	0	0
................................................TATTGGTCGAGGGTGTTT..........................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
..............................................................GTTTAGGATAACCGAGGACC..........................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0

droAna3

CATGCAGGGACTCTCACTTACTTTGTGGGTACTCAGGAGAGTATAGTCCTGTGGTCGCATGTGTTCAAGATAACCGAAGATAACCTAACCGACCGGTTGGGCCATATCGTAGCAGATTATTCAGTCAACGAGTGCACGCTCGAGGATATTTTTCTAAAATTCGAGAAACAATCCAAATCGCAA------TCAACTTCAAATCAATCATCGGTTCAACAAAA---------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...................................................................................................GGCCATATCGTAGCAGATT......................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
..........................................................................................GACCGGTTGGGCCATATCGTAGCAGAT.......................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
.................TTACTTTGTGGGTACTCAGGAGAGTATA...............................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
...........................................TAGTCCTGTGGTCGCATGTGTTCA.........................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
...............ACTTACTTTGTGGGTACTCAGGA......................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
....................................................................GATAACCGAAGATAACCTAAC...................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0

droBip1

CATGCAGGCACGCTCACTTACTTTGTGGGCACCCAGGAGAGTATAGTCCTTTGGTCGCACGTGTTCAAGATAACTGAAGACAACTTAACCGAGCGGCTAGGCCACATCGTAGCGGACTACTCGGTGAACGAGTGCACGCTCGAGGACATTTTCCTCAAGTTCGATAAACAAGCCAAATCGCAA------TCAACGTCGAG------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CATGCCGGCACTCTTACGTACTTCGTAAGCATACAGGAAACCGTAATCCAGTGGTCGAATGTGTTCAAGATAACGGAAGATTATTTGGCCGATCGGCTGGGGGACATTGTTGAGGATTACTCTGTGAACGAGTGCACGCTTGAGGATATTTTCCTCAAGTTCGACAAACAGGATAAGTCCCAA------TCAACGTCACGCCAATCATCGG-------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CACGCTGGCACACTTACCTACTTTGTGGGCACACAGGAGAGTATAGTCCACTGGTCGGATGTGTTTAAGATAACCGGGGATTACTTAGATAATCGGTTAAGCGATCTGGTCGCAGATTATTCTGTGAACGAATGTACCCTGGAGGATATTTTCCTCAAGTTCGAAAAGCAGTCGAAATC---------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CATGCCGGCACACTCACCTACTTTGTGAGCACCCAGGAAAGTGCAGTCCAATGGTCGGATGTGTTTAAGATAGCGGAGGACTACCTGACCGACCGGCTAGGTGACCTCGTGGCGGACTATTCGGTAAACGAGTGCACCTTGGAGGACATCTTTCTCAAACACGAGAAGCAGGCCAAGTC---------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CATGCCGGCACCCTCACCTACTTTGTGAGCACCCAGGACAGCATAGTCCTCTGGTCGGATGTGTTTAAAATAGCGGAGGAGTACTTGGCCGATCGGCTAAGTGACCTCGTGGCGGACTATTCGCTCAACGAGTGCACCTTGGAGGATATTTTTCTCAAATTTGAAAAACAGGCAAAATCACAA------TCGACGTCG--------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CATGCCGGCACCCTCACCTACTTCGTAGGCACCCAGGAGAACGTGGTCCTCTGGTCGGACGTGTTCAAGATAGCTGAGGACTATCTGGGCGATCGGTTAAGCGACCTCGTGGCGGACTATTCGGTGAACGAGTGCACCCTGGAGGATATTTTTCTCAAGTACGAGAAGGAGTCAAAGTCA--------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CATGCCGGCACCCTCACCTACTTCGTAAGCACCCAGGAGAACATAGTCCTCTGGTCGGACGTCTTTAAAATAGCAGAAGACTACTTGGCCGATCGGTTGAGTGACCTCGTGGCAGACTATTCTGTCAACGAGTGCACCCTGGAGGATATTTTTCTCAAGTACGAGAAGGAGTCACACTCAAAA------GCAACGTCACGTCAGAGCTCCGTGCAGCGAAGTCCGGAAATCGGAAACTATGTATAAGT------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

CATGCCGGAACGCTCACTTACTTCGTAGGGACCCAGGAGAATATAATTCTCTGGTCGGACGTTTTCAAGATTTCAGAGGACTATCTCACCGATCGGTTAAGTGCCCTCGTAGCGGACTATTCGGTGAACGAGTGCACACTCGAGGATATATTTCTTAAATTTGAAAAAGAAGCGAATTCGAGA------TCACCGTCACGACAAACCTCGG-------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

CATGCCGGCACACTCACCTACTTTGTTAGCACGCAGGAGAGTGTGGTCCTTTGGTCAAGTGTTTTCAAGATAGCTGAGGAATATCTGGGCGATCGCTTAAGCGCTCTCGTGGCCGACTATTCGGTGAACGAGTGCACACTCGAGGATATTTTCCTCAAGTTCGAGAGAGAGGCGAAATCACAA------TCGACGTCACGTCAAACCTCCGTGCAA--------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..................TACTTTGTTAGCACGCAGGAGAGTG.................................................................................................................................................................................................................................................	25	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0
..................................AGGAGAGTGTGGTCCTTTGGTCA...................................................................................................................................................................................................................................	23	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................TGGCCGACTATTCGGTGAACGAGTGC.....................................................................................................................................................	26	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................GACTATTCGGTGAACGAGT.......................................................................................................................................................	19	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0
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........................................................................................................................................................CCTCAAGTTCGAGAGAGA..................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.................................................................................................................CGACTATTCGGTGAACGAGTGCACA..................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................ATAGCTGAGGAATATCTGG....................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.......................................................................AGCTGAGGAATATCTGGGCATC...............................................................................................................................................................................................	22	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

CATGCCGGCACGCTCACCTACTTCGTTAGCACGCAGGAGAGTGTGGTCCTTTGGTCGAGTGTTTTCAAGATAGCTGAGGACTATCTGGGCGATCGCTTGCGCGATCTCGTGGCCGATTATTCGGTGAACGAGTGCACCCTCGAGGACATTTTCCTCAAGTTCGAGAGAGAGGCGAAATCACAA------TCGGCATCACGTCAAACCTCCGTGCAA--------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.......................................................................AGCTGAGGACTATCTGGGC..................................................................................................................................................................................................	19	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................GCTTGCGCGATCTCGTGGCC..........................................................................................................................................................................	20	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................GATTATTCGGTGAACGAGTGCACCCTC...............................................................................................................................................	27	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................TTCAAGATAGCTGAGGAC...........................................................................................................................................................................................................	18	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................TTTTCAAGATAGCTGAGGACT..........................................................................................................................................................................................................	21	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................TCAAGATAGCTGAGGACT..........................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................CGCTTGCGCGATCTCGTGGCC..........................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................TTCGGTGAACGAGTGCACCCTCGAGGA..........................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................ATCTGGGCGATCGCTTGCGCGAT...................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..............................................................TTTCAAGATAGCTGAGGACT..........................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................TAGCTGAGGACTATCTGGGCGATCGCT...........................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............CTCACCTACTTCGTTAGCACG...........................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................GCGCGATCTCGTGGCCGAT.......................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................TAGCTGAGGACTATCTGGGCGATCGCC...........................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................TTCAAGATAGCTGAGGACT..........................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................AGTTCGAGAGAGAGGCGAA............................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

CATGCCGGCACGCTCACCTACTTCGTTAGCACGCAGGAGAGTGTGGTCCTTTGGTCGAGTGTTTTCAAGATAGCTGAGGACTATCTGGGCGATCGCTTGCGCGATCTCGTGGCCGATTATTCGGTGAACGAGTGCACCCTCGAGGACATTTTCCTCAAGTTCGAGAGAGAGGCGAAATCACAA------TCGGCGTCACGTCAAACCTCCGTGCAA--------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.............................................................................................................................................................................................TCGGCGTCACGTCAAACCTCCGTGC......................................................................	25	1	1.00	1	0	0	1	0
.............TCACCTACTTCGTTAGCACGCA.........................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1
.................................................................................................................................................ACATTTTCCTCAAGTTCGAGAGAGA..................................................................................................................	25	1	1.00	1	0	0	1	0

droYak3

CATGCCGGCACCCTCACCTACTTTGTAAGCACGCAGGAGAGCGTGGTCCTCTGGTCGAATGTTTTCAAAATAGCGGACGACTATCTGGGCGATCGCTTAAGCGATCTCGTAGCCGACTATTCGGTGAACGAGTGCACCCTGGAGGATATTTTTCTCAAGTTTGATAGGGAGGCGAAATCACAA------TCGGCGTCACGTCAAACATCCGTACAACGAAGTCCGGAAA---GTAGCTACGTTTAGG-------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.................................................................................................................CGACTATTCGGTGAACGAGTGCACCCTGGA.............................................................................................................................................	30	1	7.00	7	0	0	0	0	0	0	0	0	0	0	7
.................CTACTTTGTAAGCACGCAGGAGAGC..................................................................................................................................................................................................................................................	25	1	7.00	7	0	0	0	0	0	0	0	0	0	0	7
..........................................................................GGACGACTATCTGGGCGAT...............................................................................................................................................................................................	19	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................ATCACAA------TCGGCGTCACGTC..................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................GAAGTCCGGAAA---GTAGCTAC............................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................AA------TCGGCGTCACGTCAAACATCCGTA.......................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................AATAGCGGACGACTATCTGGGCG.................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................CAACGAAGTCCGGAAA---GTA.................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................GGCGAAATCACAA------TCGGCGTCACGT...................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................GAGCGTGGTCCTCTGGTCGAAT................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................TCGCTTAAGCGATCTCGTAGC...........................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................ATATTTTTCTCAAGTTTGATAGGGA..................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................AGTCCGGAAA---GTAGCTACGTTTA.......................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................CAACGAAGTCCGGAAA---GTAGCTACGT..........................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................CAAGTTTGATAGGGAGGCGAA............................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................ACAACGAAGTCCGGAAA---GTAGC...............................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................GAATGTTTTCAAAATAGCGGAC..............................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................AACGAGTGCACCCTGGAGGC..........................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................AGTCCGGAAA---GTAGCTACGT..........................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................CTTAAGCGATCTCGTAGCC..........................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................GACTATTCGGTGAACGAGT.......................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................CAAGTTTGATAGGGAGGC...............................................................................................................	18	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................ATCACAA------TCGGCGTCACGTCAAACATCC..........................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................TTTGTAAGCACGCAGGAGAG...................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................CAAACATCCGTACAACGAAGTCCG...........................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................AAGCACGCAGGAGAGCGTGGTCCTCTGGT.....................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................CTGGTCGAATGTTTTCAAAATAGCGGAC..............................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

CATGCCGGCACCCTCACCTACTATGTAAGCACACAGGAGAGCGTGATCCTCTGGTCGAATGTTTTCAAAATAGCGGAGGACTATCTGGGCAATCGCTTAACCGATCTCGTAGCCGACTATTCGGTGAACGAGTGCACCCTTGAGGATATTTTTCTGAAGTTTGACAGGGAGGCGAAATCACAA------TCAGCGTCACGTCAAACATCCGTACAACGAAATCCTGAAA---GTAACTATGTTTAGG-------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
....................................................................................CTGGGCAATCGCTTAACCGATCT.................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
.................................................................................TATCTGGGCAATCGCTTAACC......................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
............................GCACACAGGAGAGCGTGATCCTCT........................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
...................................................................................................................................................ATTTTTCTGAAGTTTGACAGGGA..................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
.............................................................................................CGCTTAACCGATCTCGTAGC...........................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
.............TCACCTACTATGTAAGCACACAGGA......................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................ATCCGTACAACGAAATCCTGAAA---GT..................................................	25	1	1.00	1	1	0	0	0	0	0	0
.............................................................................................................................................................................GAAATCACAA------TCAGCGTCACGTCA.................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
..........................................GTGATCCTCTGGTCGAATG...............................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
...................................................................................................................................................................................................................TACAACGAAATCCTGAAA---GTAACTA.............................................	25	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................................................ATCACAA------TCAGCGTCACGTC..................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
...........................AGCACACAGGAGAGCGTGATCCT..........................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
....................................................................................................................................................................CAGGGAGGCGAAATCACAA------TCAGCGTCAC.....................................................................................	29	1	1.00	1	0	0	0	0	1	0	0
........................GTAAGCACACAGGAGAGCGTGATCCTCT........................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0	0
...............................................................................................................................................................................AATCACAA------TCAGCGTCACGT...................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
................................................................................................................................................................TTGACAGGGAGGCGAAATCAC.......................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................GACTATTCGGTGAACGAGT.......................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
...................................................................AAATAGCGGAGGACTATCTGGGCAATC..............................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................ATATTTTTCTGAAGTTTGA........................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
.........................................................................................................................................................................................................CAAACATCCGTACAACGAAATCCTGAA........................................................	27	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................................................................................GTACAACGAAATCCTGAAA---GT..................................................	21	1	1.00	1	0	0	0	0	1	0	0
............................................................GTTTTCAAAATAGCGGAG..............................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
.........................TAAGCACACAGGAGAGCGTGATCC...........................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................TCGGTGAACGAGTGCACCCTTGAGGA..........................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................................................TTCTGAAGTTTGACAGGGAGGC...............................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0
..................................................................................................................................................TATTTTTCTGAAGTTTGACAGGGAG.................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
..........................................................ATGTTTTCAAAATAGCGGAGGAC...........................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
........................................................................................................................................................TCTGAAGTTTGACAGGGAGGCGAAA...........................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................................................................GCGAAATCACAA------TCAGCGTCACGT...................................................................................	24	1	1.00	1	0	1	0	0	0	0	0

dmo_1687

scaffold_6500:29245615-29245765 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-0.2	0.0	0.1