ID:

dmo_1683

 Coordinate:

scaffold_6500:29239066-29239216 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.9 -9.4 -9.4

Flybase annnotation

CDS [Dmoj\GI18234-cds]; exon [dmoj_GLEANR_3030:4]; intron [Dmoj\GI18234-in]

Repeatable elements

NameClassFamilyStrand
Homo6DNAhAT-Pegasus-
AT_richLow_complexityLow_complexity+
mature
star
  1. scaffold_621:184-207 -
  2. scaffold_1706:634-657 +
  3. scaffold_2895:328-351 +
  4. scaffold_5825:3290-3313 +
  5. scaffold_6320:70339-70362 +
  6. scaffold_6395:71519-71542 +
  7. scaffold_6468:73441-73464 +
  8. scaffold_6470:10872-10895 +
  9. scaffold_6473:13748211-13748234 +
  10. scaffold_6473:13793255-13793278 +
  11. scaffold_6482:364608-364631 -
  12. scaffold_6482:366170-366193 +
  13. scaffold_6482:1002873-1002896 +
  14. scaffold_6498:3302297-3302320 +
  15. scaffold_6498:3357491-3357514 +
  16. dmo_1683  scaffold_6500:29239108-29239131 +
  17. scaffold_6540:355432-355455 +
  18. scaffold_6541:1348372-1348395 +
  19. scaffold_6680:17014608-17014631 -
  20. scaffold_6680:17016172-17016195 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TCTGTCTGTTACATACTTTTAACAAAACCATTATACCCTGATTTCCCATTGAAAATGGGTTCAGGGTATAAAAATTGAATATGCATATTCTTACTGCTTTTATTTCGCTTCAAAGTAAAAAATTAAAATAAATATATGTAGGCAAAAGTTTTTATGTATGCTAATATGCTATGCTAATACTTAGTTACAACCCTCTTATAGATGATGATGAATATATACGTGAAGGATTTTTCACACTACAACATGTTATT
********************************************************************************************.....((((((((.......))))))))................(((((....((((..(((.((((((......)).))))))).))))..)))))............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body
..............................................CATTGAAAATGGGTTCAGGGT........................................................................................................................................................................................ 21 0 20 1.30 26 26 0 0
.......................................................................................................................................................................................GTTACAACCCTCTTATAG.................................................. 18 0 1 1.00 1 0 1 0
.............................................................................................................................................................................................................................GAAGGATTTTTCACACTACAACATGT.... 26 0 1 1.00 1 1 0 0
.......................................................................................................................................................................................GTGACCCCCCTCTTATAGA................................................. 19 3 5 0.20 1 1 0 0
.................TTTAACAAAACCATTATACC...................................................................................................................................................................................................................... 20 0 20 0.10 2 2 0 0
............................................................................................ACTGCTTTTATTTCGCTTCAAAGT....................................................................................................................................... 24 0 20 0.10 2 2 0 0
............ATACTTTTAACAAAACCATT........................................................................................................................................................................................................................... 20 0 20 0.05 1 1 0 0
.........................................................................................CTTACTGCTTTTATTTCGCTTCAAAG........................................................................................................................................ 26 0 20 0.05 1 0 1 0
...............................................ATTGAAAATGGGTTCAGGGTAT...................................................................................................................................................................................... 22 0 20 0.05 1 0 0 1
...............................................................................................GGTTTTATTTCGCTTCAAAGTT...................................................................................................................................... 22 2 20 0.05 1 0 1 0
................TTTTAACAAAACCATTATACCCTGATT................................................................................................................................................................................................................ 27 0 20 0.05 1 1 0 0
....................................................................................................................................................TTTTTATGTATGCTAATATGC.................................................................................. 21 0 20 0.05 1 1 0 0

Anti-sense strand reads

AGACAGACAATGTATGAAAATTGTTTTGGTAATATGGGACTAAAGGGTAACTTTTACCCAAGTCCCATATTTTTAACTTATACGTATAAGAATGACGAAAATAAAGCGAAGTTTCATTTTTTAATTTTATTTATATACATCCGTTTTCAAAAATACATACGATTATACGATACGATTATGAATCAATGTTGGGAGAATATCTACTACTACTTATATATGCACTTCCTAAAAAGTGTGATGTTGTACAATAA
**************************************************.....((((((((.......))))))))................(((((....((((..(((.((((((......)).))))))).))))..)))))............******************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body
.................................................................................ACGTATAAGAATGACGAAAATAAAGCGA.............................................................................................................................................. 28 0 20 0.30 6 6 0 0
........................TTTGGTAATATGGGACTAAAGG............................................................................................................................................................................................................. 22 0 20 0.20 4 4 0 0
..........................................................................AACTTATACGTATAAGAATGACGAAAAT..................................................................................................................................................... 28 0 20 0.20 4 4 0 0
......................................................................................................AAAGCGAAGTTTCATTTTTTAATTT............................................................................................................................ 25 0 11 0.09 1 1 0 0
.......................................................................................................AAGCGAAGTTTCATTTTTTAATT............................................................................................................................. 23 0 12 0.08 1 1 0 0
......................................................................................TAAGAATGACGAAAATAAAGCGAAGT........................................................................................................................................... 26 0 20 0.05 1 1 0 0
..................................................................................CGTATAAGAATGAAGAAAATAAAGC................................................................................................................................................ 25 1 20 0.05 1 1 0 0
..................................................................................CGTATAAGAATGACGAAAATAAAG................................................................................................................................................. 24 0 20 0.05 1 0 1 0
...................................................................................GTATAAGAATGACGAAAATAAAGCGA.............................................................................................................................................. 26 0 20 0.05 1 0 0 1
....................................................................................TATAAGAATGACGAAAATAAAGCGA.............................................................................................................................................. 25 0 20 0.05 1 1 0 0
..................................................................................CGTATAAGAATGACGAAAATAAAGATA.............................................................................................................................................. 27 2 20 0.05 1 0 1 0
...................................................................................GTATGAGAATGGCGGAAATAAAGCGA.............................................................................................................................................. 26 3 20 0.05 1 0 0 1
..................................................................................CGTAGAAGAATGACGAAAATAAAGCGA.............................................................................................................................................. 27 1 20 0.05 1 0 1 0
..................................................................................CGTATAAGAATGACGAAAATA.................................................................................................................................................... 21 0 20 0.05 1 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6500:29239016-29239266 + dmo_1683 TCTGTCTGTTACATACTTTT--------AACAAAACCATTAT----ACCCTGATTTCCCATTGA--AAATGGGTTCAGG-------------GTAT----AAAAATTGAATATGCATATTCTT-----------------------ACTG------------------------------------------------------------------------CTTTTATTTCGC--TTCA----------------------------------------AAGT------------------------------------------------------------AAAAAATTAAAATAAATATATGTAGGCAAAAG------T-------TTTTA-------------------------------------------------------TGTATGCTA------------------------------------------------------ATAT------------------------------------------------------G----CTAT------GCTAA-----T------------ACTTAGTTACAACCCT----------------------------------------------------------------------------------------------------------C------------------------------TTA------------------------------TA----------------GATGA--TGATGAATATATACGTGA------------------------------------------------------------------------------AG---------------------------------------GATTTT-------------------TCACACTACAACATGTTATT
droVir3 scaffold_13036:822116-822384 - TCTGCCTGTTACATACATTTGTACTTTGCACAAATAAATTAT----GCTCTT-ATACCCATTTT--TAATGGGTTCAGG-------------GTAT----AATAACCGTA-CCA-ATGTTTTT-----------------------ACAG------------------------------------------------------------------------ATTC-------------------------------------------------TGATA-CT------AGA---GCTC------AAATTATA-AAAAAT-------------------------------------------------CA-------------------------------------------------AT----AATTT-TCTG-------------------GCTCAAATTA----------------------------------------------------ATATAGGCAACGCTAAAGTTATAATATCATACAAGCCTCCTATCCACAAAATAGACCTT----------AC--------------------------------------------------------------AAATG-----------------------------------------------------------------------------------------------------------------------------------------TTATA----------------GACA-----ATGT-------------------------------------------------------------------------------------------------------------------AAACAAATTCGA--------------------AATGGTCCTAAACGTT-------AAAACA
droGri2 scaffold_15252:1713498-1713752 + TCTCCCTGTTACATACATTT-------GCACAAAACCATTGT----ATCCTTTTTACCCATTTT------C----ATAA-------------ATATAAATAACAATTATA-ATT---ATTATTGTATTGATTTGATATTATTCAGC----ACATAGCTAATAATATTAATTAAAATGG--------------------------------------------AAA------TACCTTTG----------------------------------------------------------------------------------------------------------------------------------------------------------TT-------------------------------------------------------TATTAGCTT------------------------------------------------------AATT------------------------------------------------------T----AAAT----G--CGAT-----T------------GCTTAAGTATTGAACT--------------TTGGTAATTTAAATTG----------------------------------------------------------------------------T----------------------------------------------------------------T----------------GAATA--TGTTAGGTATATTTATAGGAAATTTCATA-----------------------------------------------------------------------------------------------------------------------------------------TGTACCAC--ATGTTA
droWil2 scf2_1100000004963:860727-860977 + TCTGCCTGTTACATACATTT-------TGGCGACTTTAATAT----ACCATT-TCACCCT--AT------GGGTGTATG-------------GTAT----AAAAATCAGT-TCA---------------------------------------------------------------GAATTAAGTGCTGAATATTTTT-----------------------------------------------------------------TGCCAGTTC--AAATAACGTGGTTTCGA---GGTA------AACGTATA-TAAAAT-------------------------------------------------GT-------------------------------------------------AA----AGTAT-TCT--------------------ACCCAAAGTA----------------------------------------------------TTTTGAACATTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------TAGGATGATATGTTAAAAATTTCAAAACCTA-----------A------------------------------TTTAAGG---------------------------------------------------TTTTGAAAAAATCCATGA------------------------------------------------------------------------------AG--------------T------------------------GATTTT-------------------TC------------CTACCA
dp5 XL_group1a:575179-575425 - TCTGGACGTTACACACATCCACATTTACCACAAATCTAATAT----AACCCA-ATACTCATTTT------GAGTATCGG-------------GTAT----AATTAGGTTA-GTCGTTAT---T---------------------------------------------------------------GAACACCCTTGTA-----------------------------------------------------------------TGTCCGTATGCACATA-CA---------------------------------------------------------------------------------------------------------------------------TAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCCGTATGCAAAAAATGTACGTGTA----------TATATTTTATACGTATGTATGTATATGCATCGACGCTAAATATATGTTTATGTACACATATGTAAATATATACGTACAGAAATAT-------------------CTGAA---------ATGCAA
droPer2 scaffold_2356:2750-2979 - TCTGGACGTTACACACATCCACTTTTACCACAAATCTAATAT----ACCCCA-ATACTCATTTT------GAGTATCGG-------------GTAT----AAAAATGAAA-TTG--------------------------TATAAC----ACA--------------------------------------------------------------------A--------TAAC--CTACA---------------------------------------AAGA------------------------------------------------------------GGACAATTTAGAAAATCTCAGAGAGAAAATGG------T-------ATCTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATCGAAGAAGACCAT----------GCCAATATAAA-----------------T--------------------------------------------------------------------------------------------------------------------------------------------------T--------TACAG-----------------TTACCGTTG----------------A--GAACGGATATAA-----------------------------------------------------------------------------------------------------A-AGGAG-------------------AGAT-------------------TAACACTG-AAC--ACGATA
droAna3 scaffold_13770:789228-789441 - TCACTGCGTTGCACACTTTT-------GACCAAAATTATAAT----ACCCTCT---------G-----------CAAGG-------------ATAT----AAAAACAATT------TATTTTCGGTGTAT-------------------------------------------------------------------TTTTTTGTCTACTATTTAGACGTTT--------AGAC-------------------------------------------------------------------------------------TTAAAG------------------------------------------------------------------------------------------AAAATGAAATAAATA---------------------------------------------------------------------------------------TTTTAA-------------------------------------------------------------------------------------------------------------------------------AAATCTTTTAAACGGTGTAAGCACGTTTTTATATCTTCCTTGATTAT--------------------------------------------------------------------GAAGTTA---------------------------------------------------TGAA------------------------------------------------------------------------------------------------------------------------------------TTTT-------------------TTAATGAACAACTTTTTTTT
droBip1 scf7180000395008:20935-21172 - TCACTGCGTTGCACACTTTT-------GACCAAAATTATATT----ACCCTCT---------G-----------AAAGG-------------GTAT----AAATATATAT-AAA-----------------------------------------------------------------------------------------------------------G--------ATAA--TTAAATA----TAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCA-CAT--------------------ACCCAAAGTTTATGCGAAATCTTGGTTTTATTTTGGCAGAATTGCAATTTTAATTATTATGT------------------------------------------------------G----CTAT------TGTAG-----C------------ATTCAGTTTGAATGCT----------------------------------------------------------------------------------------------------------T------------------------------TCA---------------------T-AAAAACATATACC---------------------TTGA-------------------------------------------------------------------------------------------------------------ATA------AAAATCT------------GAAAAATCAGA--------TTTCACTAAAACGATTTATT
droKik1 scf7180000302198:56772-56977 + TCACTGCGTTGCAAACTTCT-------GACTGAAATTATAAT----ACCCTG----------------------CAAGG-------------GTAT----AAAAATTGAC-ACG---------------------------------------TAACTAT-----------------------------------------------------------------------TAT--TT---------------------------------------------------------------------------------------------------------------------------------------------------------TCAATTTTTAAAATAAAAAATTGGAGAATAATTTTAATT------TTCAATTATTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTAAAAGTTGCAAAT--------------------------------------------AAT-------------TGT----TATAACTCAACTTTTA----------------------------------------TA----------------TAC----------------------------------------------------------------------------------------------------------------------------------AAATT------------GAAAAATAATAA-------TTATTCTACAACTTTTTATT
droFic1 scf7180000453826:822847-823054 + TCACTGCGTTGCAAACTTCT-------GACTGAAATTATAAT----ACCCTT--TGCTCT--G-----------CAAGG-------------GTAT----AAAAATGGAA-AAA--------------------------TTCCAC----ATA--------------------------------------------------------------------A--------AAAC-------------------------------------------------------------------------------------TTAATAGT----------------------------------------------------------------------------------------AAAATAAAATTAATTTTTG----AAATTATTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT------------------------------------------------------------------AAAAATATTTGATAAACTAAAACCAAATCCCACTGCTTT--------AACCG-----------------CAACTGTTG---------------------GTGT-------------------------------------------------------------------------------------------------------------------ATAAATATTTGT------GTTT-------------------TCACACT-------TAGACA
droEle1 scf7180000491199:287354-287594 - TCACTGCGTTGCAAACTTCT-------GACTGAAATTATAAT----ACCCTCT---------G-----------CAAGG-------------GTAT----AAAAAAAGTT-ATTTATAT---T---------------------------A--------------------------AACTTCCCGCTTGAACATTTTTTTTTAATTACTCATTTGGC--------------------------------------GCTTTTAAAAAATGAC------AAACATACTTTT-----------------------------------------------------------------------------------TG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTTTCTATATTCTATGAATATTATGCTGGAAAC-------ACTTATTGAACA-ATC------------------------------TTT------------------------------TA----------------AACAA--GAAACAAGAAACACACAA------------------------------------------------------------------------------GC---------------------------------------AAGTTT-------------------TTAAG--------CTGAAGC
droRho1 scf7180000776841:10209-10433 + TCTAGCTGTTACATACTTTT-------GCACGAATACAATAT----ACCCTT-TTACTCT--AC------GAGTAACGG-------------GTAT----AAAAACTGAT-ATTC-------------------------AGTACC----ATAAAG---------------------G--------------------------------------------TAAAAATTTCAC--TTTCA----------------------------------------CGA------------------------------------------------------------ACGAAATCAAAAACGTTATAGAAACAGAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGACCTATTTATAG---GAGACTATAGTTATCCTTACATTTACGATACAGATG---------------------TTGA-------------------------------------------------------------------------------------------------------------ATA------ACAAATT------------GAAGA-----------------CATGATAAG-ATATTAT
droBia1 scf7180000301232:7174-7409 + TCACTGCGTTGCAAACTTCT-------GACTGAAATCATTGT----ACCCTCT---------T-----------CAAGCATATAAAAAGGAAATAT----ATTAAATTCA-ATT---------------------------------------------------------------------------------------------------------------------TTA--T---------------------------------------------------------------------------------------------TTTTTGTTTTACAAGTGTTTTCTAA----------------------TGTATTTACTATATTTATAGT-----GCAATTATTTTAACGCAAGCCTA------TTTTTCGTCATGCCATTTTAGTC---------------------------------------------------------------------------------------------------------------------------------A--CGAC-------------------------------ACG----------------------------------------------------------------------------------------------------------A------------------------------ATA------------------------------TA----------------TATAGTATATTTAAAATATATATAT----------------------------------------------------------------AGTA----TTTTTAAAA-------------------------------------------------------------------------ATCATTTATT
droTak1 scf7180000414025:4189-4408 - TCTAGCTGTTACATACTTTT-------GCACGAAAGCAATAT----ACCCTT-TTACTCT--AC------GAGTAACGG-------------GTAT----AAAAATAGTG-ACG---------------------------------------------------------------A--------------------------------------------------TCGCAC--CT---------------------------------------------------------------------------------------------------------------------------------------------------------TCAACGT-----ACAAAAGTTCTGATATCAACTTT------TGTGACGAAAAATTATTTTAGAT---------------------------------------------------------------------------------------------------------------------------------A--CGAC-----T------------AAATAAAT--------ACACTACCTAAAATTTACTCCTTCGGCCCG----------------------------------------------------------------------------C-------------------------------------------------------------TTTA----------------GCAAA--TATTTAATATATACACGA----------------------------------------------------------------------------------------------------------------------------------------------------------AAGTTTTCTC
droEug1 scf7180000408984:226329-226578 + TCTATCTGTTACATACTTTT-------CAACGAATCTAGTAT----ACCCTT-TTACTCT--AC------GAGTAACGG-------------GTAT----AAAAATGTTA-ATGTTTATTATTGTGTTGGTTTAT-------------------------------------------------------------------TGTAAAAT----------------------AT--CTATAAGCATAAGTTA---------------------------------------------------------TAAATTAAACTTAATTGAAGCC----------------------------------------AGAAGACGTATTTTT-------TA--------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTCGGAAAACACTGT---TTCTTATGT------TTA-----------------TTTATATT---ACAGTAACTATAATATATTCTATAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTAC-------------------TTACATTGTCACATTTATAT
dm3 chr2L:22132669-22132893 + TCTGCCTCTTACATATTTTT-------CAACGAATCTGGTAC----ACCCATTTTACTCT--ACGAAAATAGGGCAGGG-------------GTAT----AAAAAGTTGA-AGA---------------------------------------------------------------------------------------------------------------------TAA--C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT----------GCCGATTAAAAACTGTGTCGATTAAAAAATT--------GCTACATTTT-----TA-------------TA------------------------------------------------------------------A-----------------------------------------------------------------------------------------------------------------AGAAAGTCCGTATATACCAAATGTATATGTTAGAATGTTACTATTTTT---------------------------------TATACCCGT-TATATA-GGGTGTATATATTCTTG---------------------------------------A--TCAGGATT
droSim2 3l:21583054-21583259 + TCTACCTGTGACATACTTTT-------CAACAAATCTAGTATATGTACCCTT-TTACTCT--AT------AAATAACGA-------------GTAT----AATATAC-------------------------------------------ATT--------------------------------------------------------------------A--------ATAC--CTATATGTATTTAGTATCCAGACCTAAATATATGCT------TAACATAATGTCTTCATAGT-ATTCTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC--------------------------------------------------------------------------------------------------------------------------------------------------ATATATGTAACCCAGGTCCTTCTTATCT---GAAGATA---------------------------------------------------------------------------------------------------------------------------------TATTT----ATTTTAAAA-------------------------------------------------------------------------ATTCTGCACA
droSec2 scaffold_11:2000834-2001039 + TCTACCTGTGACATACTTTT-------CAACAAATCTAGTATATGTACCCTT-TTACTCT--AT------AAATAACGA-------------GTAT----AATATAC-------------------------------------------ATT--------------------------------------------------------------------A--------ATAC--CTATATGTATTTAGTATCCAGACCTAAATATATGCT------TAACATAATGTCTTCATAGT-ATTCTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC--------------------------------------------------------------------------------------------------------------------------------------------------ATATATGTAACCCAGGTCCTTCTTATCT---GAAGATA---------------------------------------------------------------------------------------------------------------------------------TATTT----ATTTTAAAA-------------------------------------------------------------------------ATTCTGCACA
droYak3 v2_chrUn_298:3113-3355 + TCTGCCTGTTACATACTTTT-------CAACGAATCTAGTAT----ACCCTT-TAACTCC--AA------GAGTAACGG-------------GTAT----AACAATAGAG-AAC---------------------------------------------------------------G--------------------------------------------CTATAGTCCCGC--CTATACGTATTCAGCG---------------------------------------------------------TATA-TAAACTTAATAGTA-CT----------------------------------------AAAAG------T-------TTTAATCTTTT--------------------------------------------------------------------------------------------------------------------------------T--------------------------------------AAGAACTT----------GCTCTTATAAT-----------------A--------------------------------------------------------------------------------------------------------------------------------------------------C--------TATTA-----------------ATACTATAATATTTTGTTATAAATAA--TAATAATTTAAGACTTAA------------------------------------------------------------------------------GT---------------------------------------GTTTTTAAAGA-----------------CTTCTTAACTTATTATT
droEre2 scaffold_4929:19635190-19635393 + TCT--GTGTTACATACTTTT-------CAACGAATCTAGTAT----ACCGTA--TACTGT--AC------AAGTGACGG-------------GTAT----AAAAATGGAA-ATG---------------------------------------------------------------G--------------------------------------------ATA------TACGCCTA-------------TTGAGAGGTTATTATCATCT------TAAAGTAATATATATATAT--A-TATAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT--------------------------------------------------------------------------------------------------------------------------------------------------ATATATATAATTTAAATA-------------------------------------------TA----------------TATA-----ATAT--------------------------------------------------------------------------ATATAT----ATTTTAAATATATCTGTATATATA-ATATAT-----------------------------------------------------ATATATAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
TCTGTCTGTTACATACTTTT--------AACAAAACCATTAT----ACCCTGATTTCCCATTGA--AAATGGGTTCAGG-------------GTAT----AAAAATTGAATATGCATATTCTT-----------------------ACTG------------------------------------------------------------------------CTTTTATTTCGC--TTCA----------------------------------------AAGT------------------------------------------------------------AAAAAATTAAAATAAATATATGTAGGCAAAAG------T-------TTTTA-------------------------------------------------------TGTATGCTA------------------------------------------------------ATAT------------------------------------------------------G----CTAT------GCTAA-----T------------ACTTAGTTACAACCCT----------------------------------------------------------------------------------------------------------C------------------------------TTA------------------------------TA----------------GATGA--TGATGAATATATACGTGA------------------------------------------------------------------------------AG---------------------------------------GATTTT-------------------TCACACTACAACATGTTATTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................CATTGA--AAATGGGTTCAGG-------------GT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21201.30262600000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACAACCCT----------------------------------------------------------------------------------------------------------C------------------------------TTA------------------------------TA----------------G............................................................................................................................................................................................1811.001000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA------------------------------------------------------------------------------AG---------------------------------------GATTTT-------------------TCACACTACAACATGT....2611.001100000
.................TTT--------AACAAAACCATTAT----ACC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.102200000
..................................................................................................................................................ACTG------------------------------------------------------------------------CTTTTATTTCGC--TTCA----------------------------------------AAGT------------------------------------------------------------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.102200000
............ATACTTTT--------AACAAAACCATT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
........................................................................................................................CTT-----------------------ACTG------------------------------------------------------------------------CTTTTATTTCGC--TTCA----------------------------------------AAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000010
...........................................................ATTGA--AAATGGGTTCAGG-------------GTAT----......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000001
................TTTT--------AACAAAACCATTAT----ACCCTGATT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
..............................................................................................................................................................................................................................................................................................................................................................................................T-------TTTTA-------------------------------------------------------TGTATGCTA------------------------------------------------------ATAT------------------------------------------------------G----C.........................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
droVir3
TCTGCCTGTTACATACATTTGTACTTTGCACAAATAAATTAT----GCTCTT-ATACCCATTTT--TAATGGGTTCAGG-------------GTAT----AATAACCGTA-CCA-ATGTTTTT-----------------------ACAG------------------------------------------------------------------------ATTC-------------------------------------------------TGATA-CT------AGA---GCTC------AAATTATA-AAAAAT-------------------------------------------------CA-------------------------------------------------AT----AATTT-TCTG-------------------GCTCAAATTA----------------------------------------------------ATATAGGCAACGCTAAAGTTATAATATCATACAAGCCTCCTATCCACAAAATAGACCTT----------AC--------------------------------------------------------------AAATG-----------------------------------------------------------------------------------------------------------------------------------------TTATA----------------GACA-----ATGT-------------------------------------------------------------------------------------------------------------------AAACAAATTCGA--------------------AATGGTCCTAAACGTT-------AAAACASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........................................................................................................................T-----------------------ACAG------------------------------------------------------------------------ATTC-------------------------------------------------TGATA-CT------AGA---GCTC------AA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001000000000000000000000000000000000000000000000000000000000
......................................................TACCCATTTT--TAATGGGTTCAGG-------------GT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.255000000000000000000000000000000000000000000000000000000000000005
.........................................................CCATTTT--TAATGGGTTCAGG-------------GTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
droGri2
TCTCCCTGTTACATACATTT-------GCACAAAACCATTGT----ATCCTTTTTACCCATTTT------C----ATAA-------------ATATAAATAACAATTATA-ATT---ATTATTGTATTGATTTGATATTATTCAGC----ACATAGCTAATAATATTAATTAAAATGG--------------------------------------------AAA------TACCTTTG----------------------------------------------------------------------------------------------------------------------------------------------------------TT-------------------------------------------------------TATTAGCTT------------------------------------------------------AATT------------------------------------------------------T----AAAT----G--CGAT-----T------------GCTTAAGTATTGAACT--------------TTGGTAATTTAAATTG----------------------------------------------------------------------------T----------------------------------------------------------------T----------------GAATA--TGTTAGGTATATTTATAGGAAATTTCATA-----------------------------------------------------------------------------------------------------------------------------------------TGTACCAC--ATGTTASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TCTGCCTGTTACATACATTT-------TGGCGACTTTAATAT----ACCATT-TCACCCT--AT------GGGTGTATG-------------GTAT----AAAAATCAGT-TCA---------------------------------------------------------------GAATTAAGTGCTGAATATTTTT-----------------------------------------------------------------TGCCAGTTC--AAATAACGTGGTTTCGA---GGTA------AACGTATA-TAAAAT-------------------------------------------------GT-------------------------------------------------AA----AGTAT-TCT--------------------ACCCAAAGTA----------------------------------------------------TTTTGAACATTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------TAGGATGATATGTTAAAAATTTCAAAACCTA-----------A------------------------------TTTAAGG---------------------------------------------------TTTTGAAAAAATCCATGA------------------------------------------------------------------------------AG--------------T------------------------GATTTT-------------------TC------------CTACCASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........TTACATACATTT-------TGGCGACTTTAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.10202000
.........TACATACATTT-------TGGCGACTTTAATAT----............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.10200020
....CCTGTTACATACATTT-------TGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100001
..............ACATTT-------TGGCGACTTTAATAT----ACCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05101000
dp5
TCTGGACGTTACACACATCCACATTTACCACAAATCTAATAT----AACCCA-ATACTCATTTT------GAGTATCGG-------------GTAT----AATTAGGTTA-GTCGTTAT---T---------------------------------------------------------------GAACACCCTTGTA-----------------------------------------------------------------TGTCCGTATGCACATA-CA---------------------------------------------------------------------------------------------------------------------------TAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCCGTATGCAAAAAATGTACGTGTA----------TATATTTTATACGTATGTATGTATATGCATCGACGCTAAATATATGTTTATGTACACATATGTAAATATATACGTACAGAAATAT-------------------CTGAA---------ATGCAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................TTACCACAAATCTAATAT----AACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2240.2510100000000
........................TTACCACAAATCTAATAT----AACCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2340.2510100000000
..........................................................CATTTT------GAGTATCGG-------------GTAT----AATTAGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2640.2510000001000
.........................................................TCATTTT------GAGTATCGG-------------GTAT----AATTAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26180.0610100000000
..........................................................CATTTT------GAGTATCGG-------------GTAT----AATTAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25180.0610100000000
droPer2
TCTGGACGTTACACACATCCACTTTTACCACAAATCTAATAT----ACCCCA-ATACTCATTTT------GAGTATCGG-------------GTAT----AAAAATGAAA-TTG--------------------------TATAAC----ACA--------------------------------------------------------------------A--------TAAC--CTACA---------------------------------------AAGA------------------------------------------------------------GGACAATTTAGAAAATCTCAGAGAGAAAATGG------T-------ATCTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATCGAAGAAGACCAT----------GCCAATATAAA-----------------T--------------------------------------------------------------------------------------------------------------------------------------------------T--------TACAG-----------------TTACCGTTG----------------A--GAACGGATATAA-----------------------------------------------------------------------------------------------------A-AGGAG-------------------AGAT-------------------TAACACTG-AAC--ACGATASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................ATTTT------GAGTATCGG-------------GTAT----AAAAATGAAA-...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28190.051010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG-------------------AGAT-------------------TAACACTG-AAC--ACGA..21200.051010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-------------------AGAT-------------------TAACACTG-AAC--ACGAT.21200.051100000
droAna3
TCACTGCGTTGCACACTTTT-------GACCAAAATTATAAT----ACCCTCT---------G-----------CAAGG-------------ATAT----AAAAACAATT------TATTTTCGGTGTAT-------------------------------------------------------------------TTTTTTGTCTACTATTTAGACGTTT--------AGAC-------------------------------------------------------------------------------------TTAAAG------------------------------------------------------------------------------------------AAAATGAAATAAATA---------------------------------------------------------------------------------------TTTTAA-------------------------------------------------------------------------------------------------------------------------------AAATCTTTTAAACGGTGTAAGCACGTTTTTATATCTTCCTTGATTAT--------------------------------------------------------------------GAAGTTA---------------------------------------------------TGAA------------------------------------------------------------------------------------------------------------------------------------TTTT-------------------TTAATGAACAACTTTTTTTTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................TTTT-------GACCAAAATTATAAT----ACCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.153030000
............................ACCAAAATTATAAT----ACCCTCT---------G-----------CAAGG-------------A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051100000
droBip1
TCACTGCGTTGCACACTTTT-------GACCAAAATTATATT----ACCCTCT---------G-----------AAAGG-------------GTAT----AAATATATAT-AAA-----------------------------------------------------------------------------------------------------------G--------ATAA--TTAAATA----TAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCA-CAT--------------------ACCCAAAGTTTATGCGAAATCTTGGTTTTATTTTGGCAGAATTGCAATTTTAATTATTATGT------------------------------------------------------G----CTAT------TGTAG-----C------------ATTCAGTTTGAATGCT----------------------------------------------------------------------------------------------------------T------------------------------TCA---------------------T-AAAAACATATACC---------------------TTGA-------------------------------------------------------------------------------------------------------------ATA------AAAATCT------------GAAAAATCAGA--------TTTCACTAAAACGATTTATTSizeHit CountTotal NormTotal
No Reads
droKik1
TCACTGCGTTGCAAACTTCT-------GACTGAAATTATAAT----ACCCTG----------------------CAAGG-------------GTAT----AAAAATTGAC-ACG---------------------------------------TAACTAT-----------------------------------------------------------------------TAT--TT---------------------------------------------------------------------------------------------------------------------------------------------------------TCAATTTTTAAAATAAAAAATTGGAGAATAATTTTAATT------TTCAATTATTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTAAAAGTTGCAAAT--------------------------------------------AAT-------------TGT----TATAACTCAACTTTTA----------------------------------------TA----------------TAC----------------------------------------------------------------------------------------------------------------------------------AAATT------------GAAAAATAATAA-------TTATTCTACAACTTTTTATTSizeHit CountTotal NormTotal
No Reads
droFic1
TCACTGCGTTGCAAACTTCT-------GACTGAAATTATAAT----ACCCTT--TGCTCT--G-----------CAAGG-------------GTAT----AAAAATGGAA-AAA--------------------------TTCCAC----ATA--------------------------------------------------------------------A--------AAAC-------------------------------------------------------------------------------------TTAATAGT----------------------------------------------------------------------------------------AAAATAAAATTAATTTTTG----AAATTATTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT------------------------------------------------------------------AAAAATATTTGATAAACTAAAACCAAATCCCACTGCTTT--------AACCG-----------------CAACTGTTG---------------------GTGT-------------------------------------------------------------------------------------------------------------------ATAAATATTTGT------GTTT-------------------TCACACT-------TAGACASizeHit CountTotal NormTotal
No Reads
droEle1
TCACTGCGTTGCAAACTTCT-------GACTGAAATTATAAT----ACCCTCT---------G-----------CAAGG-------------GTAT----AAAAAAAGTT-ATTTATAT---T---------------------------A--------------------------AACTTCCCGCTTGAACATTTTTTTTTAATTACTCATTTGGC--------------------------------------GCTTTTAAAAAATGAC------AAACATACTTTT-----------------------------------------------------------------------------------TG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTTTCTATATTCTATGAATATTATGCTGGAAAC-------ACTTATTGAACA-ATC------------------------------TTT------------------------------TA----------------AACAA--GAAACAAGAAACACACAA------------------------------------------------------------------------------GC---------------------------------------AAGTTT-------------------TTAAG--------CTGAAGCSizeHit CountTotal NormTotal
No Reads
droRho1
TCTAGCTGTTACATACTTTT-------GCACGAATACAATAT----ACCCTT-TTACTCT--AC------GAGTAACGG-------------GTAT----AAAAACTGAT-ATTC-------------------------AGTACC----ATAAAG---------------------G--------------------------------------------TAAAAATTTCAC--TTTCA----------------------------------------CGA------------------------------------------------------------ACGAAATCAAAAACGTTATAGAAACAGAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGACCTATTTATAG---GAGACTATAGTTATCCTTACATTTACGATACAGATG---------------------TTGA-------------------------------------------------------------------------------------------------------------ATA------ACAAATT------------GAAGA-----------------CATGATAAG-ATATTATSizeHit CountTotal NormTotal
No Reads
droBia1
TCACTGCGTTGCAAACTTCT-------GACTGAAATCATTGT----ACCCTCT---------T-----------CAAGCATATAAAAAGGAAATAT----ATTAAATTCA-ATT---------------------------------------------------------------------------------------------------------------------TTA--T---------------------------------------------------------------------------------------------TTTTTGTTTTACAAGTGTTTTCTAA----------------------TGTATTTACTATATTTATAGT-----GCAATTATTTTAACGCAAGCCTA------TTTTTCGTCATGCCATTTTAGTC---------------------------------------------------------------------------------------------------------------------------------A--CGAC-------------------------------ACG----------------------------------------------------------------------------------------------------------A------------------------------ATA------------------------------TA----------------TATAGTATATTTAAAATATATATAT----------------------------------------------------------------AGTA----TTTTTAAAA-------------------------------------------------------------------------ATCATTTATTSizeHit CountTotal NormTotal
No Reads
droTak1
TCTAGCTGTTACATACTTTT-------GCACGAAAGCAATAT----ACCCTT-TTACTCT--AC------GAGTAACGG-------------GTAT----AAAAATAGTG-ACG---------------------------------------------------------------A--------------------------------------------------TCGCAC--CT---------------------------------------------------------------------------------------------------------------------------------------------------------TCAACGT-----ACAAAAGTTCTGATATCAACTTT------TGTGACGAAAAATTATTTTAGAT---------------------------------------------------------------------------------------------------------------------------------A--CGAC-----T------------AAATAAAT--------ACACTACCTAAAATTTACTCCTTCGGCCCG----------------------------------------------------------------------------C-------------------------------------------------------------TTTA----------------GCAAA--TATTTAATATATACACGA----------------------------------------------------------------------------------------------------------------------------------------------------------AAGTTTTCTCSizeHit CountTotal NormTotal
No Reads
droEug1
TCTATCTGTTACATACTTTT-------CAACGAATCTAGTAT----ACCCTT-TTACTCT--AC------GAGTAACGG-------------GTAT----AAAAATGTTA-ATGTTTATTATTGTGTTGGTTTAT-------------------------------------------------------------------TGTAAAAT----------------------AT--CTATAAGCATAAGTTA---------------------------------------------------------TAAATTAAACTTAATTGAAGCC----------------------------------------AGAAGACGTATTTTT-------TA--------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTCGGAAAACACTGT---TTCTTATGT------TTA-----------------TTTATATT---ACAGTAACTATAATATATTCTATAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTAC-------------------TTACATTGTCACATTTATATSizeHit CountTotal NormTotal
No Reads
dm3
TCTGCCTCTTACATATTTTT-------CAACGAATCTGGTAC----ACCCATTTTACTCT--ACGAAAATAGGGCAGGG-------------GTAT----AAAAAGTTGA-AGA---------------------------------------------------------------------------------------------------------------------TAA--C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT----------GCCGATTAAAAACTGTGTCGATTAAAAAATT--------GCTACATTTT-----TA-------------TA------------------------------------------------------------------A-----------------------------------------------------------------------------------------------------------------AGAAAGTCCGTATATACCAAATGTATATGTTAGAATGTTACTATTTTT---------------------------------TATACCCGT-TATATA-GGGTGTATATATTCTTG---------------------------------------A--TCAGGATTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------GCCGATTAAAAACTGTGTCGA...........................................................................................................................................................................................................................................................................................................................................................................................................22116.001600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................AGTTGA-AGA---------------------------------------------------------------------------------------------------------------------TAA--C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT----------GCCGA...........................................................................................................................................................................................................................................................................................................................................................................................................................21110.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000012000000000000000000000000000000000000000001100000000000000000000100000010000000000000000000000001010
...........................................................................................................TGA-AGA---------------------------------------------------------------------------------------------------------------------TAA--C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT----------GCCGATTA........................................................................................................................................................................................................................................................................................................................................................................................................................2117.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000001000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000100000000000000000000010000000000000000000000100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA------------------------------------------------------------------A-----------------------------------------------------------------------------------------------------------------AGAAAGTCCGTATATACCAAATGTA............................................................................................................................................2817.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT----------GCCGATTAAAAACTGTGTC.............................................................................................................................................................................................................................................................................................................................................................................................................2116.0060000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
................TTTT-------CAACGAATCTGGTAC----ACCCAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010201010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTGTGTCGATTAAAAAAT..................................................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGTTAGAATGTTACTATT........................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000010020
.......................................................................................................AAGTTGA-AGA---------------------------------------------------------------------------------------------------------------------TAA--C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT----------GCCGT...........................................................................................................................................................................................................................................................................................................................................................................................................................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000001200000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTCCGTATATACCAAATG..............................................................................................................................................2114.0040000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000100000
...........................................................T--ACGAAAATAGGGCAGGG-------------GTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011100
.................TTT-------CAACGAATCTGGTAC----ACCCATTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGATTAAAAACTGTGTCGAT..........................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000100000
................TTTT-------CAACGAATCTGGTAC----ACCCATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-----TA-------------TA------------------------------------------------------------------A-----------------------------------------------------------------------------------------------------------------AGAAAGTCCGTATA.......................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTT-----TA-------------TA------------------------------------------------------------------A-----------------------------------------------------------------------------------------------------------------AGAAAGTCCGTA.........................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACTATTTTT---------------------------------TATACCCGT-..........................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
.....................................................TTACTCT--ACGAAAATAGGGCAGGG-------------GTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTATATATTCTTG---------------------------------------A--TCAG....2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT----------GCCGATTAAAAACTGTGT..............................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------GCCGATTAAAAACTGTGTCG............................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
............................................................................................................................................................................................................................................C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT----------GCCGATTAAAAACTGTG...............................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT-----TA-------------TA------------------------------------------------------------------A-----------------------------------------------------------------------------------------------------------------AGAAAGTCCGTAT........................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAAACTGTGTCGATTAAAAAAT..................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................AACGAATCTGGTAC----ACCCATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGT-TATATA-GGGTGTATATA........................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAACTGTGTCGATTAAAA.....................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTCGATTAAAAAATT--------GCT......................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000100000000000000
...........................................................................................................TGA-AGA---------------------------------------------------------------------------------------------------------------------TAA--C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT----------GCCGATT.........................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCGATTAAAAAATT--------GCT......................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..................................TCTGGTAC----ACCCATTTTACTCT--ACGAAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2912.0020000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAACTGTGTCGATTAAAATG...................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............ATATTTTT-------CAACGAATCTGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2122.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000010000000000000000000000000010000000000000000000000000000000000000000000100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGATTAAAAACTGTGTCGA...........................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATTTT-----TA-------------TA------------------------------------------------------------------A-----------------------------------------------------------------------------------------------------------------AGAAAGTCCGTA.........................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................CAGGG-------------GTAT----AAAAAGTTGA-AGA---------------------------------------------------------------------------------------------------------------------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAAACTGTGTCGATTAAA......................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTCCGTATATACCAAATGT.............................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000100000
.........................................................TCT--ACGAAAATAGGGCAGGG-------------G.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000010000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTTT---------------------------------TATACCCGT-TATC......................................................................2021.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTGTGTCGATTAAAAAA...................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
................TTTT-------CAACGAATCTGGTAC----ACCCATTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAAACTGTGTCGATT.........................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................TACTCT--ACGAAAATAGGGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................ATAGGGCAGGG-------------GTAT----AAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAACTGTGTCGATTAAAAAATT--------GC.......................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..........................................................................CAGGG-------------GTAT----AAAAAGTTGA-AG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
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droSim2
TCTACCTGTGACATACTTTT-------CAACAAATCTAGTATATGTACCCTT-TTACTCT--AT------AAATAACGA-------------GTAT----AATATAC-------------------------------------------ATT--------------------------------------------------------------------A--------ATAC--CTATATGTATTTAGTATCCAGACCTAAATATATGCT------TAACATAATGTCTTCATAGT-ATTCTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC--------------------------------------------------------------------------------------------------------------------------------------------------ATATATGTAACCCAGGTCCTTCTTATCT---GAAGATA---------------------------------------------------------------------------------------------------------------------------------TATTT----ATTTTAAAA-------------------------------------------------------------------------ATTCTGCACASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..TACCTGTGACATACTTTT-------CAACAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATA---------------------------------------------------------------------------------------------------------------------------------TATTT----ATTTTAAAA-------------------------------------------------------------------------AT........1940.25100010000000000000
..........ACATACTTTT-------CAACAAATCTAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2370.14100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------------------------------------------------------------------------------------------------------------------------TATTT----ATTTTAAAA-------------------------------------------------------------------------A.........16130.08100000010000000000
droSec2
TCTACCTGTGACATACTTTT-------CAACAAATCTAGTATATGTACCCTT-TTACTCT--AT------AAATAACGA-------------GTAT----AATATAC-------------------------------------------ATT--------------------------------------------------------------------A--------ATAC--CTATATGTATTTAGTATCCAGACCTAAATATATGCT------TAACATAATGTCTTCATAGT-ATTCTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC--------------------------------------------------------------------------------------------------------------------------------------------------ATATATGTAACCCAGGTCCTTCTTATCT---GAAGATA---------------------------------------------------------------------------------------------------------------------------------TATTT----ATTTTAAAA-------------------------------------------------------------------------ATTCTGCACASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
TCTGCCTGTTACATACTTTT-------CAACGAATCTAGTAT----ACCCTT-TAACTCC--AA------GAGTAACGG-------------GTAT----AACAATAGAG-AAC---------------------------------------------------------------G--------------------------------------------CTATAGTCCCGC--CTATACGTATTCAGCG---------------------------------------------------------TATA-TAAACTTAATAGTA-CT----------------------------------------AAAAG------T-------TTTAATCTTTT--------------------------------------------------------------------------------------------------------------------------------T--------------------------------------AAGAACTT----------GCTCTTATAAT-----------------A--------------------------------------------------------------------------------------------------------------------------------------------------C--------TATTA-----------------ATACTATAATATTTTGTTATAAATAA--TAATAATTTAAGACTTAA------------------------------------------------------------------------------GT---------------------------------------GTTTTTAAAGA-----------------CTTCTTAACTTATTATTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................................................T----AACAATAGAG-AAC---------------------------------------------------------------G--------------------------------------------CTATAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22100.10100100000000
...............................................................................................................................................................................................................................................TACGTATTCAGCG---------------------------------------------------------TATA-TAAACTTAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26120.08101000000000
.................TTT-------CAACGAATCTAGTAT----ACCCTT-TA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05101000000000
droEre2
TCT--GTGTTACATACTTTT-------CAACGAATCTAGTAT----ACCGTA--TACTGT--AC------AAGTGACGG-------------GTAT----AAAAATGGAA-ATG---------------------------------------------------------------G--------------------------------------------ATA------TACGCCTA-------------TTGAGAGGTTATTATCATCT------TAAAGTAATATATATATAT--A-TATAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT--------------------------------------------------------------------------------------------------------------------------------------------------ATATATATAATTTAAATA-------------------------------------------TA----------------TATA-----ATAT--------------------------------------------------------------------------ATATAT----ATTTTAAATATATCTGTATATATA-ATATAT-----------------------------------------------------ATATATATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/18/2015 at 01:01 AM