ID:

dmo_1682

 Coordinate:

scaffold_6500:29238122-29238272 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-8.6 -8.6 -8.2 -7.9

Flybase annnotation

CDS [Dmoj\GI18234-cds]; exon [dmoj_GLEANR_3030:3]; intron [Dmoj\GI18234-in]

No Repeatable elements found

mature
  1. scaffold_621:191-217 +
  2. scaffold_3986:7079-7105 +
  3. scaffold_4098:1488-1514 +
  4. scaffold_4433:1463-1489 +
  5. scaffold_4614:5316-5342 +
  6. scaffold_6320:69222-69248 +
  7. scaffold_6359:1794041-1794067 +
  8. scaffold_6382:4942-4968 +
  9. scaffold_6470:4361-4387 +
  10. scaffold_6473:13746654-13746680 +
  11. scaffold_6482:364615-364641 +
  12. scaffold_6482:1000405-1000431 +
  13. scaffold_6496:5041329-5041355 +
  14. scaffold_6498:382618-382644 +
  15. scaffold_6498:2942039-2942065 +
  16. scaffold_6498:3300739-3300765 +
  17. dmo_1682  scaffold_6500:29238185-29238211 +
  18. scaffold_6500:29529952-29529978 +
  19. scaffold_6541:1604741-1604767 +
  20. scaffold_6680:17014615-17014641 +
star
  1. scaffold_4098:1440-1462 +
  2. scaffold_4433:1415-1437 +
  3. scaffold_6320:69174-69196 +
  4. scaffold_6382:4340-4362 +
  5. scaffold_6473:13746606-13746628 +
  6. scaffold_6482:364567-364589 +
  7. scaffold_6482:1000357-1000379 +
  8. scaffold_6482:2055031-2055053 +
  9. scaffold_6482:2182184-2182206 +
  10. scaffold_6496:5041281-5041303 +
  11. scaffold_6498:382570-382592 +
  12. scaffold_6498:2884484-2884506 +
  13. scaffold_6498:2941991-2942013 +
  14. scaffold_6498:3254618-3254640 +
  15. scaffold_6498:3300691-3300713 +
  16. dmo_1682  scaffold_6500:29238137-29238159 +
  17. scaffold_6500:29923318-29923340 +
  18. scaffold_6500:31495569-31495591 +
  19. scaffold_6500:31602047-31602069 +
  20. scaffold_6680:17014567-17014589 +
  21. scaffold_4614:5268-5290 +
  22. scaffold_6473:13791024-13791046 +
  23. scaffold_6541:1604693-1604715 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CTCGCCAAAAAAACGTTTTGTGAATGACGACGAAATTAATCATCAAAAGAGTACGTACAGTTTGGCAAGAAAGTGTTTACACACAGGGAAAAAATGTTAATTTTTTACTTTGAAGCGAAATAAAAGCAGTAAGAATATGCATATTCAATTTTAAAAAAAAAATGAAAATAGGTAAATTAGACTATAAACACTATAAGTAAGTAAAAAAAAATTACAATATGTTTCCATTAATAAAAGAAAATAACAAACAA
*****************************************************************.......((.(((((...((((((((((((....))))))).)))))................))))).....))*************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V041
embryo
 V110
male body		 V049
head
.................................................................................................................AGCGAAATAAAAGCAGTAAGAATATGC............................................................................................................... 27 0 20 1.15 23 3 20 0 0 0
.....................GAATGACGACGAAATTAAT................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0
..CGCCAAAAAAACGTTTTGTGAATGACGA............................................................................................................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0
.................................................................................................................................................................................TAGACTATAAACACTATAAGTAAGT................................................. 25 0 1 1.00 1 1 0 0 0 0
.................TTGTGAATGACGACGAAATTAATCATC............................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
........................................................................................................................TAAAAGCAGTAAGAATATGCATATTCA........................................................................................................ 27 0 20 0.45 9 6 0 3 0 0
.................................................................................................................AGCGAAATAAAAGCAGTAAGAATATG................................................................................................................ 26 0 20 0.45 9 9 0 0 0 0
........................................................................................................................TAAAAGCAGTAAGAATATGCATATTC......................................................................................................... 26 0 20 0.30 6 4 2 0 0 0
.................................................................CAAGAAAGTGTTTACACACAGGG................................................................................................................................................................... 23 0 20 0.30 6 5 0 0 1 0
.................................................................................................................ATCGAAATAAAAGCAGTAAGAATATGC............................................................................................................... 27 1 20 0.20 4 0 4 0 0 0
..............................................................TGGCAAGAAAGTGTTTACACACAGGG................................................................................................................................................................... 26 0 20 0.15 3 2 1 0 0 0
........................................................................................................................TAAAAGCAGTAAGAATATGCATATTCAAT...................................................................................................... 29 0 20 0.15 3 3 0 0 0 0
...................................................................................................................CGAAATAAAAGCAGTAAGAATATGC............................................................................................................... 25 0 20 0.10 2 1 1 0 0 0
..................................................................AAGAAAGTGTTTACACACAGGGAA................................................................................................................................................................. 24 0 20 0.10 2 2 0 0 0 0
................................................................................................................AAGCGAAATAAAAGCAGTAAGAATA.................................................................................................................. 25 0 20 0.10 2 1 1 0 0 0
.................................................................CAAGAAAGTGTTTACACACAGGGAA................................................................................................................................................................. 25 0 20 0.10 2 0 2 0 0 0
.................................................................................................................AGCGAAATAAAAGCAGTAAGAATA.................................................................................................................. 24 0 20 0.10 2 2 0 0 0 0
.................................................................CAAGAAAGTGTTTACACACAGGGAAA................................................................................................................................................................ 26 0 20 0.10 2 0 2 0 0 0
................................................................................................TTAATTTTTTACTTTGAAGCGAA.................................................................................................................................... 23 0 12 0.08 1 1 0 0 0 0
.................................................................CAAGAAAGTGTTTACACACAGGGAAAA............................................................................................................................................................... 27 0 20 0.05 1 0 1 0 0 0
...............................................................GGCAAGAAAGTGTTTACACACAGGGAAA................................................................................................................................................................ 28 0 20 0.05 1 0 0 0 1 0
.................................................................CAAGAAAGTGTTTACACAC....................................................................................................................................................................... 19 0 20 0.05 1 0 1 0 0 0
..............................................................TGGCAAGAAAGTGTTTACACACAGGGA.................................................................................................................................................................. 27 0 20 0.05 1 1 0 0 0 0
............................................................TTTGGCAAGAAAGTGTTTACA.......................................................................................................................................................................... 21 0 20 0.05 1 0 0 1 0 0
.................................................................CAAGAAAGTGTGTACACACAGGGAA................................................................................................................................................................. 25 1 20 0.05 1 1 0 0 0 0
.........................................................CAGTTTGGCAAGAAAGTGTTTACACAC....................................................................................................................................................................... 27 0 20 0.05 1 0 0 0 0 1
............................................................TTTGGCAAGAAAGTGTTTACACACAGGG................................................................................................................................................................... 28 0 20 0.05 1 1 0 0 0 0
.............................................................TTGGCAAGAAAGTGTTTACA.......................................................................................................................................................................... 20 0 20 0.05 1 0 0 0 1 0
..................................................................AAGAAAGTGTTTACACACAGGGAAAAA.............................................................................................................................................................. 27 0 20 0.05 1 1 0 0 0 0
..................................................................AAGAAAGTGTTTACACACAGGGAAAAAA............................................................................................................................................................. 28 0 20 0.05 1 1 0 0 0 0
.......................................................TACAGTTTGGCAAGAAAGTGTTTAC........................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0
............................................................TTTGGCAAGAGAGTGTTTACA.......................................................................................................................................................................... 21 1 20 0.05 1 0 0 0 1 0
..........................................................................................................................AAAGCAGTAAGAATATGCA.............................................................................................................. 19 0 20 0.05 1 1 0 0 0 0
.............................................................TTGGCAAGAAAGTGTTTACACACAGGGA.................................................................................................................................................................. 28 0 20 0.05 1 1 0 0 0 0
................................................................................................................TAGCGAAATAAAAGCAGTAGGAATA.................................................................................................................. 25 2 20 0.05 1 1 0 0 0 0
........................................................................................................................TAAAAGCAGTAAGAATATGCATATTCAAC...................................................................................................... 29 1 20 0.05 1 1 0 0 0 0
.......................................................................................................................ATAAAAGCAGTAAGAATATGCATATTC......................................................................................................... 27 0 20 0.05 1 1 0 0 0 0
...........................................................................................................................................GAAATTCAATTTTAAAAAAAAA.......................................................................................... 22 2 20 0.05 1 0 1 0 0 0
........................................................................................................................TAAAAGCAGTAAGAATATGCATAT........................................................................................................... 24 0 20 0.05 1 1 0 0 0 0
.................................................................................................................AGCGAAATAAAAGCAGTAAGAAGATGC............................................................................................................... 27 1 20 0.05 1 0 1 0 0 0
..................................................................AAGAAAGTGTTTACACACAGGGA.................................................................................................................................................................. 23 0 20 0.05 1 1 0 0 0 0
........................................................................................................................TAAAAGCAGTAAGAGTGTGCATATTCA........................................................................................................ 27 2 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

GAGCGGTTTTTTTGCAAAACACTTACTGCTGCTTTAATTAGTAGTTTTCTCATGCATGTCAAACCGTTCTTTCACAAATGTGTGTCCCTTTTTTACAATTAAAAAATGAAACTTCGCTTTATTTTCGTCATTCTTATACGTATAAGTTAAAATTTTTTTTTTACTTTTATCCATTTAATCTGATATTTGTGATATTCATTCATTTTTTTTTAATGTTATACAAAGGTAATTATTTTCTTTTATTGTTTGTT
***************************************************************************************************************.......((.(((((...((((((((((((....))))))).)))))................))))).....))***************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V056
head
 M060
embryo
................................................................................................................................................................TTACTTTTATCCATTTAATCTGATATT................................................................ 27 0 4 0.50 2 2 0 0
............................CTCCTTTAATTGGTAGTGTTC.......................................................................................................................................................................................................... 21 3 2 0.50 1 0 1 0
.................................................TCATGCATGGTAAACCGTT....................................................................................................................................................................................... 19 2 3 0.33 1 1 0 0
..................................................................................................................................................................ACTTTTATCCATTTAATCTGATAT................................................................. 24 0 4 0.25 1 1 0 0
...........................................................................................................GAAACTTCGCTTTATTTTCGTCA......................................................................................................................... 23 0 20 0.15 3 3 0 0
..................................................................................................TTAAAAAATGAAACTTCGCTTTATT................................................................................................................................ 25 0 20 0.10 2 1 0 1
...........................................................................AAATGTGTGTCCCTTTTTC............................................................................................................................................................. 19 1 20 0.05 1 0 0 1
......................................................................................................AAAATGAAACTTCGCTTTATT................................................................................................................................ 21 0 20 0.05 1 1 0 0
...............................................................CCGTTCTTTCACAAATGTGTGTCCCT.................................................................................................................................................................. 26 0 20 0.05 1 1 0 0
..........................................................................................................TGAAACTTCGCTTTATTTTC............................................................................................................................. 20 0 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6500:29238072-29238322 + dmo_1682 CTCGCCAA---------AAAAAC--GTTTT---GTGA--ATGACGACGAAAT-----TAAT---------CATCAAAAG--A-----GTA------------------CGTACAGTTTGGCAAGAAAGTGTTTACACACAGGGAAAAAAT--------------------------------------------------G----------------------------TTAATTTTTTA-CTTTGAA------GCGA-AATAAAAGC-AGTAA---------------------------------GAATAT--GCATATTCAATTTTAAAAA------------------------------------------------------------------------------AA---------AA-----------------------------ATGAAAATAGGTAAAT---------TAG-----------------------------ACTATAAACACTATA------------AG----TAAG-----------------------------TAAAAAAAAAT---------------------------TACAA------------------------------TATG--TT------------------------------------------------------TCCATTA--------------------A-----TAAAAGAAAATAACAAACAA
droVir3 scaffold_13045:247548-247773 + GCTAAAAA---------AAT----AT--AT---------------TCAATGA-----AACGT---------TTCATGAAAAGA-CGGGTCTGATCAACCTGAAAAACAC---------AAAAAAAAAAT-----------AAAACAAAAT--------------------------------------------------T----------------------------TTTGTTTTATT-CTTCTAT------GTAA-AT--AAA----------------------------------------------------------------------------------------AATAA---------AGTAAAAA-----------------GTAAATTCAAATAT---------------------------------------------------------------------------------------------------------------AT-TG----TA-------AAGAAAAAT----------------------------------------------------TTGTCGATGAAC---------------ACAAATGATTAAA-AATAAAACCTATTTAA--TT------------------------------------------------------------CAT---------AACG-----G-----ACACACAAAACAACAACTAA
droGri2 scaffold_9479:2203-2394 + AACATGT--------------------------------------------------------------------------------------------------------ACAGTTTGTCAATAAAGTGTTTGGACACAGGAAAAATTGAATA--------------------------------------------TT-----------------------------TT-CTTATATT-GTTTGCA---------------------GGTATTTTGGACTG------------------------AT--AAACATAACCTCAATCATAAGAA-GATCCGCCA--------------------------------CATACAGATAAAATAACAA-----TAATAA------------------------------------------------------------------------------------------------------------------------------------------------------------TA--------CGA--------------------------------TTCTCAAT--------------------------A--------AT-----------------AAC------------------------------------------------GGTGTGCAATGTA--GTTCAATC--A-------A---TAATAAAA
droWil2 scf2_1100000000702:7651-7867 - CGAAATTA---------TGT----CG--TT---TCAGA-ACG-----------------------------------------------A------------------CATACAGTTTGGCAAGAAAGTGTTTACTCACAGGGAAAACAT--------------------------------------------------T----------------------------AAAATTTTTAG-CTTTGAA------GCGA-AAAAAAAGC-AGTTAAT---------------------------------------------------------------------------------------------------A-----------------ATGATT--------------------------------------GTCCAAACTTTTTTT-AATGAAAATAGGTAAAC---------TAA-----------------------------AGTATAAAC-TTATTAA----------------TAAGTGAAAAAAAATTAACAA-------------------------------------------------------------------------------------TATG--TT------------------------------------------------------TCAATTA--------------------A-----CAAAAGAAAAT-AACAAAAA
dp5 Unknown_group_282:11675-11823 - GAAGATTA---------TT------------------------------------------------------------------------------------------------------------------TTACAGAAACAAAAAAT--------------------------------------------------T----------------------------TTAATTTTTTA-ATTTTAG------GTTA-AGTTAAA----------------------------------------------------------------------------------------AATTA---------------------------------------------------------------------------------------------------------------AATAAAAA--------------------------------ATA----ATA-TT----TT-------ATAG-----T-----------------------------AAAAGATACGATTACAAGTACTTTATCGATAAAAAAAAAATGGA---GCATT--------------------------------TAA--------------------------------------------------------C--------------------A-----T--A--------GGAAAATA
droPer2 scaffold_54:187255-187458 - TAGCTATG---------AAA----TT--CG---------------TCAGCTT-----TCTGC---------TTCAGGAGAGTGAT--ATA------------------TATACAGTATGTCAAGCAACTCTTTACACACTGAAAATAAAT--------------------------------------------------T----------------------------AAATTTTTTGA-CTTTAGA------TAAA-AAAATAATGGCCTTGGA--TTCAA------------------------AT--------------------------------------------------------------------------------------------------------------------------------TTATCAAATTTGTTG----------AATTCATAACAAT-------------------------------------T----CAG-TT----ATGAATTATAAAGT-AGTTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAAAAAAGAATAACAA
droAna3 scaffold_13230:434100-434304 - GAAAAAAA---------TAA----TA--AA-----------------------------------------------------------------------------------------ACAAAAATATATATATATATATA--------------------------------------------TGAA-----------AGAA-AAAAAGGAAAAAAATACGAAGAA-----------------------------AAAAAAAACC-AAAAA------------------------------------------------------------------------------------------------------C------------------ATATATACA------------------------------------------------------------------------------------------------------------------------TATA----------------TAAAAAGAAAAAAAATGAAA--------AAA-----------------------------------------------------------------------------TA--TTTAATTAAAAAAAAAAACAAAACAAAAAATTGTTAAAGAAAAATAATATTTTCCTTTAATAA---------------------------GGAGAATATACACAAAAAA
droBip1 scf7180000392714:866-1118 - CGACAAAA---------AAA----TA--TA---AAAAAAATACCA-------AA------------AAAATAACAAAAA--A-----AAC------------------CAAAAAAAATGTCAAAAAAATACCAAAATGT------------------------------------------------------------------------------------------------------------------------------------------------ACCAAAAAAATAGACCTAAAAATA-------------------------------------CAAAAAAAGTACCAAAAAAAATACAAAAAAAT-----------------AAATTTAAAAAA---------------------------------------ATACCTAA-AAAAAATACAAAAAAATACCAAAAATATA-----------------------------CCAAAAAATACCAAA------------AA----AA----------AA-------------------TAAAAAAAAAT---------------------------ACCAA------------------------------TAAA--TA------------------------------------------------------TAAAAAA--------------------A-----TACAAAAAAAAAACCAATAA
droKik1 scf7180000302517:638978-639213 + TGTGAATGCTAGCAAAAAAAAAA-GG-TCAAG---GAATATACAA----------------------------------AAA-----------------------------AAATTATATAAAGAAAATGTATTAATATTAA--T--TGT----ATGAAATTATTAAAAATACAAAAATAAATATAAAAA-----------ATATAAAATATTAAAAATATAAGAAATA-----------------------------TAAGAAAATT-AAATA------------------------------------------------------------------------------------------------------T------------------AAAAATATA------------------------------------------------------------------------------------------------------------------------TA-A----------------GAAATATAAAAAATATAAAA--------AAA--TATAAAGA--------------------------------------------------------A--------------AT---------AAAAATATA------------------------------------A-----A--------------------A-----ATAAAACAAATATTAAAAAA
droFic1 scf7180000453815:148268-148516 - AAAATCTT---------TT----------T---TTAA--ATAATGCAGAACTGA------------AGAACAACTATAA--T-----CAC------------------C-------------------------------------------------------------------------------AAAAAAC-----A----------------------------ACAATCAACAG-CTTCCAA------GTAA-C-----------------------TTCAAAAAACTAGT--TAAAGTCG-------------------------------------AGCATAAAATTTCTGCTAAAATGTAGAAAAAC-----------------GA-----AAATAATTCCTA-ATTTTATAAAAAAC-----------------------------AGTACTAAGTGCAT---------TAA-----------------------------ACTATTTACATTTGA------------CA----AC-----------------------------AACAGACACAAAT---------------------------TTTAT------------------------------TTTT--GT------------------------------------------------------TCCATTA--------------------G-----AAAACAAAAATGCCGAATGA
droEle1 scf7180000491021:409486-409685 - AACTGTTG---------AAAAAA-TT-TGAAA---GTTTTTGGAA----------------------------------AAAAAC--TTA------------------TATAAAATTTC--------------------------------------------------------------------------------------------------------------TTAAGTTTTT--TTTTTAA------ATTA-AAAAAAAAA-TGTAA---------------------------------TTATAT--GCAAATTAATTTTTAAAAATGAACTACAA--------------------------------C----------------------------------------------------------------------------------------------------------------------------------------------------------ATTAAAAAAC-A-------------AATGAAAATTATTAAAAAA--------------------------------TGTTCAA--------------------------ACAAA------C-----------------AACTTTA------------------------------------A-----AAAATT---------------A-----GACATAAAGTTCAAAAAGTT
droRho1 scf7180000772071:444-643 - TACAT----------------------------------------------------------------------------------------------------------ACAGTATGTCAATAAAGTGTTTTGACATTGGGAAAAAAT--------------------------------------------------G----------------------------CAATTTTTCAA-GTTTCTA------TGTTATA-AAAAGTAAGTTTGC---------------------------------------------------------------------------------------------------A-----------------GCGTGTTTTCATTT------------------------------ATTTTAAATTTTA-T-TATGATTATGGTGATAT---------CTAAGAACTAATATTTAAAAAAAATTCTTTATTT----TAT-T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAT---------ATAGTATTAA-----CAAAAACAAAA-AAGAAATA
droBia1 scf7180000301377:7697-7857 + ACACTTTA---------GCG----TA--TT---GGA-------------------------------------------ATT-----------------------------TAAATATATAGAGAAAGTGAGAACTAATAAAAATAGAAA------------------------------------------------TT-----------------------------AA-AAATTTAATTTTTAAAACTAAAATT------AGCAA-ATTAA---------------------------------A------------------------------------AAAAAA------------------------------------------------------------------TAAGAAAAAATAAAATTAAGTGTTAAAAATTTTT-TAAATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT------------------------------------------------------A----------------------------------------ATATTAATATAA
droTak1 scf7180000415775:31789-32022 - CTCAATTT---------AAAAACGCA--CT---GCAAGAATATTT-------TA------------AGACTAATTAAGA--G-----CAC--------C---------ACCAGAATCTAGAGAGAAAGTGAGAA--------AATAAAAA------------------------------------------------TT-----------------------------AA-AAATTACT-GTTTAAAATTAAAATT------AACTA-ACTAA---------------------------------AAATTA--AAAAATTAAAAGTTAAAAA-AAATTAAAA--------------------------------AATTTAAAAAAATTAAAAA-----TAATTA------------------------------------------------------------------------------------------------------------------------------------------------------------AA--------TAA--------------------------------AAATTAAA--------------------------A--------TC-----------------AAC------------------------------------------------ATTTAAAAATAAA--AGTCAATTAGA-------A---TAGTAATA
droEug1 scf7180000409145:10209-10359 + ATAT-----------------------------------------------------------------------------------------------------------ACAGTATGTCAAGAAACTCTTTACACACTGACAAAAAAA--------------------------------------------------C----------------------------ATATTTTTTGA-CTTTGCA------TGCA-AAAATAACGCCTTTAGC---------------------------------------------------------------------------------------------------T-----------------ATTCCT--------------------------------------TTTCAATATCTGTTT----------AATGAATCAATATTAA--------------------------------ATA----TCT-TT----TT-------AAAGTAAGTATG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAAAAAA
dm3 chr3LHet:1116293-1116554 - CAAGCGCA---------AAAGA------CTCCTGTGAAAATACTC-------TTGTTGGTGCTAAATATCCAACTAAAT--ACAC--ATA------------------CATACAGTTTGTCAAGAAACTGTTTACACACTGTGAAATAAG--------------------------------------------------T----------------------------TGAATTTTTGA-CTTTAAA------GCTA-AAAATTAAA-GGTTTTTTGCTTAA------------------------TT--------------------------------------------------------------------------------------------------------------------------------AAACGCAGTTTTTTT-ATAAAATATAATTAAACAATATTAA--------------------------------TTT----TAC-TT----ATAAATCAAAAAAC-A-------------AATTAAAAATATTAAAT---------------------------------------------------ATT--------------------------------AAA--------------------------------------------------------T--------------------A-----TACAGGAAAATAAACAACAA
droSim2 node_10229:6319-6510 - TACTT----------------------------------------------------------------------------------------------------------ACAGTATGTCAAGAAACTGTTTACACACTGCGAAATAAG--------------------------------------------------T----------------------------TGAATTTTTGA-CTTTGAA------GGTA-AAAATAAAG-AGTTCTTTGCTTAA------------------------AT--------------------------------------------------------------------------------------------------------------------------------ATCCGCAATTTTT-T-AAACAATATAATAAAACAATATTTA--------------------------------TTT----TAC-TT----ATAAATCGAATAAC-A-------------AATTAAGAACATT------------------------------------------------------------------------------------------AAA--------------------------------------------------------T--------------------A-----TACAAGAAAATAAACAACAA
droSec2 scaffold_153:16095-16287 + TATAT----------------------------------------------------------------------------------------------------------ACAGTATGCCAAGAAACTGTTTACACACTGTGAAATAAT--------------------------------------------------T----------------------------TGAATTTTTGA-CTTCAAA------GGTA-AAAATAAAG-AGTTATTTGCTTTA------------------------TT--------------------------------------------------------------------------------------------------------------------------------AAACGAAATTTTTTT-ATAAAATATAATGAAACAATATTTG--------------------------------TTT----TAC-TT----ATAAATCAAAAAAT-A-------------AATTAGGAATATT------------------------------------------------------------------------------------------AAA--------------------------------------------------------T--------------------A-----TACAAGAAAATAAACAACAA
droYak3 v2_chrUn_2961:741-993 - GTCTTGTA---------AATGG------CTAT---GGATTTACTA----------------------------------------------------------------------------------------AAAAACT*GAAGCGAAA------------------CATATATTTA--------TGAAAATAGAAGGTT----------------------------TA--GATCCTG-------------------------------------GCTT--ATTAATTGGGTACAATCTATTAAG-------------------------------------GAAAATTGGAGCTTAAATAGATGTAGAAAAAG-----------------GTATTCTGGAATATAATGGAA---------AA-----------------------------AGAAA-----------------------------------------------------------------------------------------------------------------------------------AAGTGTTATGACAATGAGGAGAAAAACGATTTGCGTTTA--ATTGGAGAAAATAA-----TACT--CT------------------------------------------------------TCCATTA--------------------A-----AGGAATATATTATAAAACAA
droEre2 scaffold_4929:26258554-26258689 + TTTTTACT---------TT----------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAAAGT----------------------------TTAGAAAAAACACTTTAAAT---------T----GTGAACAGAAAAAA---AA-----------------------------AACAAAGACAAAT---------------------------GCTATCAACACAAA--ATTGAA-AACCAAA-----TATCAAAG------------------------------------------------------C-----AAAAGA---------------G-----GAAAGAAAAACAAAAAACAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
CTCGCCAA---------AAAAAC--GTTTT---GTGA--ATGACGACGAAAT-----TAAT---------CATCAAAAG--A-----GTA------------------CGTACAGTTTGGCAAGAAAGTGTTTACACACAGGGAAAAAAT--------------------------------------------------G----------------------------TTAATTTTTTA-CTTTGAA------GCGA-AATAAAAGC-AGTAA---------------------------------GAATAT--GCATATTCAATTTTAAAAA------------------------------------------------------------------------------AA---------AA-----------------------------ATGAAAATAGGTAAAT---------TAG-----------------------------ACTATAAACACTATA------------AG----TAAG-----------------------------TAAAAAAAAAT---------------------------TACAA------------------------------TATG--TT------------------------------------------------------TCCATTA--------------------A-----TAAAAGAAAATAACAAACAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......................................................................................................................................................................................................................................................A------GCGA-AATAAAAGC-AGTAA---------------------------------GAATAT--GC................................................................................................................................................................................................................................................................................................................................................................................................................................................................27201.15233000200
...................................GA--ATGACGACGAAAT-----TAAT---------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
..CGCCAA---------AAAAAC--GTTTT---GTGA--ATGACGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAG-----------------------------ACTATAAACACTATA------------AG----TAAG-----------------------------T...........................................................................................................................................................................................2511.001100000
............................TT---GTGA--ATGACGACGAAAT-----TAAT---------CATC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
.....................................................................................................................................................................................................................................................................TAAAAGC-AGTAA---------------------------------GAATAT--GCATATTCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.459630000
.......................................................................................................................................................................................................................................................A------GCGA-AATAAAAGC-AGTAA---------------------------------GAATAT--G.................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.459900000
.....................................................................................................................................................................................................................................................................TAAAAGC-AGTAA---------------------------------GAATAT--GCATATTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.306400020
........................................................................................................................CAAGAAAGTGTTTACACACAGGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.306500001
.....................................................................................................................TGGCAAGAAAGTGTTTACACACAGGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.153200010
.....................................................................................................................................................................................................................................................................TAAAAGC-AGTAA---------------------------------GAATAT--GCATATTCAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.153300000
...............................................................................................................................................................................................................................................................CGA-AATAAAAGC-AGTAA---------------------------------GAATAT--GC................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.102100010
.........................................................................................................................AAGAAAGTGTTTACACACAGGGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.102200000
......................................................................................................................................................................................................................................................AA------GCGA-AATAAAAGC-AGTAA---------------------------------GAATA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.102100010
........................................................................................................................CAAGAAAGTGTTTACACACAGGGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.102000020
.......................................................................................................................................................................................................................................................A------GCGA-AATAAAAGC-AGTAA---------------------------------GAATA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.102200000
........................................................................................................................CAAGAAAGTGTTTACACACAGGGAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.102000020
.....................................................................................................................................................................................................................................TTAATTTTTTA-CTTTGAA------GCGA-A.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23120.081100000
........................................................................................................................CAAGAAAGTGTTTACACACAGGGAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051000010
......................................................................................................................GGCAAGAAAGTGTTTACACACAGGGAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051000001
........................................................................................................................CAAGAAAGTGTTTACACAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000010
.....................................................................................................................TGGCAAGAAAGTGTTTACACACAGGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
...................................................................................................................TTTGGCAAGAAAGTGTTTACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051010000
................................................................................................................CAGTTTGGCAAGAAAGTGTTTACACAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051001000
...................................................................................................................TTTGGCAAGAAAGTGTTTACACACAGGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051100000
....................................................................................................................TTGGCAAGAAAGTGTTTACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000001
.........................................................................................................................AAGAAAGTGTTTACACACAGGGAAAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
.........................................................................................................................AAGAAAGTGTTTACACACAGGGAAAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051100000
..............................................................................................................TACAGTTTGGCAAGAAAGTGTTTAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051100000
.......................................................................................................................................................................................................................................................................AAAGC-AGTAA---------------------------------GAATAT--GCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051100000
....................................................................................................................TTGGCAAGAAAGTGTTTACACACAGGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051100000
.....................................................................................................................................................................................................................................................................TAAAAGC-AGTAA---------------------------------GAATAT--GCATATTCAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.051100000
....................................................................................................................................................................................................................................................................ATAAAAGC-AGTAA---------------------------------GAATAT--GCATATTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
.....................................................................................................................................................................................................................................................................TAAAAGC-AGTAA---------------------------------GAATAT--GCATAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051100000
.........................................................................................................................AAGAAAGTGTTTACACACAGGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051100000
droVir3
GCTAAAAA---------AAT----AT--AT---------------TCAATGA-----AACGT---------TTCATGAAAAGA-CGGGTCTGATCAACCTGAAAAACAC---------AAAAAAAAAAT-----------AAAACAAAAT--------------------------------------------------T----------------------------TTTGTTTTATT-CTTCTAT------GTAA-AT--AAA----------------------------------------------------------------------------------------AATAA---------AGTAAAAA-----------------GTAAATTCAAATAT---------------------------------------------------------------------------------------------------------------AT-TG----TA-------AAGAAAAAT----------------------------------------------------TTGTCGATGAAC---------------ACAAATGATTAAA-AATAAAACCTATTTAA--TT------------------------------------------------------------CAT---------AACG-----G-----ACACACAAAACAACAACTAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droGri2
AACATGT--------------------------------------------------------------------------------------------------------ACAGTTTGTCAATAAAGTGTTTGGACACAGGAAAAATTGAATA--------------------------------------------TT-----------------------------TT-CTTATATT-GTTTGCA---------------------GGTATTTTGGACTG------------------------AT--AAACATAACCTCAATCATAAGAA-GATCCGCCA--------------------------------CATACAGATAAAATAACAA-----TAATAA------------------------------------------------------------------------------------------------------------------------------------------------------------TA--------CGA--------------------------------TTCTCAAT--------------------------A--------AT-----------------AAC------------------------------------------------GGTGTGCAATGTA--GTTCAATC--A-------A---TAATAAAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
CGAAATTA---------TGT----CG--TT---TCAGA-ACG-----------------------------------------------A------------------CATACAGTTTGGCAAGAAAGTGTTTACTCACAGGGAAAACAT--------------------------------------------------T----------------------------AAAATTTTTAG-CTTTGAA------GCGA-AAAAAAAGC-AGTTAAT---------------------------------------------------------------------------------------------------A-----------------ATGATT--------------------------------------GTCCAAACTTTTTTT-AATGAAAATAGGTAAAC---------TAA-----------------------------AGTATAAAC-TTATTAA----------------TAAGTGAAAAAAAATTAACAA-------------------------------------------------------------------------------------TATG--TT------------------------------------------------------TCAATTA--------------------A-----CAAAAGAAAAT-AACAAAAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................T--------------------------------------GTCCAAACTTTTTTT-AATGAAAATAGG............................................................................................................................................................................................................................................................................................................2860.50303000
..........................................................................................................................................................................................................................................................................................................................................................................................................TGATT--------------------------------------GTCCAAACTTTTTTT-AATGAAAA................................................................................................................................................................................................................................................................................................................2860.17101000
.........................................................................................................................................................................................................................................................................................................................................................................................................ATGATT--------------------------------------GTCCAAACTTTTTTT-AA......................................................................................................................................................................................................................................................................................................................2360.17101000
.........................................................................................A------------------CATACAGTTTGGCAAGAAAGTGTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25130.15201010
...................................................................................................................................................................................................................................................TTGAA------GCGA-AAAAAAAGC-AGTTAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2470.14101000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAACTTTTTTT-AATGAAAATAGG............................................................................................................................................................................................................................................................................................................2690.11101000
...................................................................................................................................................................................................................................................TTGAA------GCGA-AAAAAAAGC-AGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2190.11101000
..............................................................................................................TACAGTTTGGCAAGAAAGTGTTTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.10200020
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAA-------------------------------------------------------------------------------------TATG--TT------------------------------------------------------TCAATTA--------------------A-----CAAAAGAAA...........28100.10101000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACAA-------------------------------------------------------------------------------------TATG--TT------------------------------------------------------TCAATTA--------------------A-----CAAAAG..............27100.10101000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAA-------------------------------------------------------------------------------------TATG--TT------------------------------------------------------TCAATTA--------------------A-----CAAAAGA.............27100.10101000
........................................................................................................................................CACAGGGAAAACAT--------------------------------------------------T----------------------------AAAATTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23110.09101000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGAAAAAAAATTAACAA-------------------------------------------------------------------------------------TATG--TT------------------------------------------------------.....................................................26110.09100010
........................................................................................................................................CACAGGGAAAACAT--------------------------------------------------T----------------------------AAAATTTTTAG-............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26110.09100010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATTA--------------------A-----CAAAAGAAAAT-AACAAA..25120.08101000
............................................................................................................CATACAGTTTGGCAAGAAAGTGTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24130.08100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATTAACAA-------------------------------------------------------------------------------------TATG--TT------------------------------------------------------TCAAT................................................22150.07101000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------------------------------------------------------TCAATTA--------------------A-----CAAAAGAAAA..........19150.07100010
.........................................................................................A------------------CATACAGTTTGGCAAGAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21150.07100001
...............................................................................................................ACAGTTTGGCAAGAAAGTGTTTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100100
..............................................................................................................TACAGTTTGGCAAGAAAGTGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100010
dp5
GAAGATTA---------TT------------------------------------------------------------------------------------------------------------------TTACAGAAACAAAAAAT--------------------------------------------------T----------------------------TTAATTTTTTA-ATTTTAG------GTTA-AGTTAAA----------------------------------------------------------------------------------------AATTA---------------------------------------------------------------------------------------------------------------AATAAAAA--------------------------------ATA----ATA-TT----TT-------ATAG-----T-----------------------------AAAAGATACGATTACAAGTACTTTATCGATAAAAAAAAAATGGA---GCATT--------------------------------TAA--------------------------------------------------------C--------------------A-----T--A--------GGAAAATASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
TAGCTATG---------AAA----TT--CG---------------TCAGCTT-----TCTGC---------TTCAGGAGAGTGAT--ATA------------------TATACAGTATGTCAAGCAACTCTTTACACACTGAAAATAAAT--------------------------------------------------T----------------------------AAATTTTTTGA-CTTTAGA------TAAA-AAAATAATGGCCTTGGA--TTCAA------------------------AT--------------------------------------------------------------------------------------------------------------------------------TTATCAAATTTGTTG----------AATTCATAACAAT-------------------------------------T----CAG-TT----ATGAATTATAAAGT-AGTTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAAAAAAGAATAACAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAAGT-AGTTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAAAAAAGAA......2541.255040001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAAGT-AGTTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAAAAAAGAAA.....2640.502020000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAAGT-AGTTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAAAAAAGAAT.....2640.502020000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAGT-AGTTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAAAAAAGAA......2450.402020000
................................................................................................................................TCTTTACACACTGAAAATAAAT--------------------------------------------------T----------------------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23190.326051000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAAGT-AGTTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAAAAAAGA.......2440.251000001
................................................................................................................................TCTTTACACACTGAAAATAAAT--------------------------------------------------T----------------------------AAATT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28140.213030000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGT-AGTTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAAAAAAGAA......2350.201010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGT-AGTTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAAAAAAGAAT.....2450.201010000
................................................................................................................................TCTTTACACACTGAAAATAAAT--------------------------------------------------T----------------------------AAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27140.142020000
................................................................................................................................TCTTTACACACTGAAAATAAAT--------------------------------------------------T----------------------------A.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24150.071010000
.............................................................................................................................AACTCTTTACACACTGAAAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21190.051010000
..................................................................................................................................TTTACACACTGAAAATAAAT--------------------------------------------------T----------------------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21190.051010000
.............................................................................................................................AACTCTTTACACACTGAAAATAAAT--------------------------------------------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25190.051010000
.................................................................................................................................CTTTACACACTGAAAATAAAT--------------------------------------------------T----------------------------AC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051010000
droAna3
GAAAAAAA---------TAA----TA--AA-----------------------------------------------------------------------------------------ACAAAAATATATATATATATATA--------------------------------------------TGAA-----------AGAA-AAAAAGGAAAAAAATACGAAGAA-----------------------------AAAAAAAACC-AAAAA------------------------------------------------------------------------------------------------------C------------------ATATATACA------------------------------------------------------------------------------------------------------------------------TATA----------------TAAAAAGAAAAAAAATGAAA--------AAA-----------------------------------------------------------------------------TA--TTTAATTAAAAAAAAAAACAAAACAAAAAATTGTTAAAGAAAAATAATATTTTCCTTTAATAA---------------------------GGAGAATATACACAAAAAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................................................................................................................................................................................ACGAAGAA-----------------------------AAAAAAAACC-................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
............................................................................................................................................................................................AA-----------AGAA-AAAAAGGAAAAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.501000001
.........................................................................................................................................................................................................AGAA-AAAAAGGAAAAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1880.131010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAACAAAACAAAAAA...............................................................................23200.051010000
...................................................................................................................................................................................................................................AA-----------------------------AAAAAAAACC-AAAAA------------------------------------------------------------------------------------------------------C------------------A.................................................................................................................................................................................................................................................................................................................................................................................19200.051010000
droBip1
CGACAAAA---------AAA----TA--TA---AAAAAAATACCA-------AA------------AAAATAACAAAAA--A-----AAC------------------CAAAAAAAATGTCAAAAAAATACCAAAATGT------------------------------------------------------------------------------------------------------------------------------------------------ACCAAAAAAATAGACCTAAAAATA-------------------------------------CAAAAAAAGTACCAAAAAAAATACAAAAAAAT-----------------AAATTTAAAAAA---------------------------------------ATACCTAA-AAAAAATACAAAAAAATACCAAAAATATA-----------------------------CCAAAAAATACCAAA------------AA----AA----------AA-------------------TAAAAAAAAAT---------------------------ACCAA------------------------------TAAA--TA------------------------------------------------------TAAAAAA--------------------A-----TACAAAAAAAAAACCAATAASizeHit CountTotal NormTotal
No Reads
droKik1
TGTGAATGCTAGCAAAAAAAAAA-GG-TCAAG---GAATATACAA----------------------------------AAA-----------------------------AAATTATATAAAGAAAATGTATTAATATTAA--T--TGT----ATGAAATTATTAAAAATACAAAAATAAATATAAAAA-----------ATATAAAATATTAAAAATATAAGAAATA-----------------------------TAAGAAAATT-AAATA------------------------------------------------------------------------------------------------------T------------------AAAAATATA------------------------------------------------------------------------------------------------------------------------TA-A----------------GAAATATAAAAAATATAAAA--------AAA--TATAAAGA--------------------------------------------------------A--------------AT---------AAAAATATA------------------------------------A-----A--------------------A-----ATAAAACAAATATTAAAAAASizeHit CountTotal NormTotal
No Reads
droFic1
AAAATCTT---------TT----------T---TTAA--ATAATGCAGAACTGA------------AGAACAACTATAA--T-----CAC------------------C-------------------------------------------------------------------------------AAAAAAC-----A----------------------------ACAATCAACAG-CTTCCAA------GTAA-C-----------------------TTCAAAAAACTAGT--TAAAGTCG-------------------------------------AGCATAAAATTTCTGCTAAAATGTAGAAAAAC-----------------GA-----AAATAATTCCTA-ATTTTATAAAAAAC-----------------------------AGTACTAAGTGCAT---------TAA-----------------------------ACTATTTACATTTGA------------CA----AC-----------------------------AACAGACACAAAT---------------------------TTTAT------------------------------TTTT--GT------------------------------------------------------TCCATTA--------------------G-----AAAACAAAAATGCCGAATGASizeHit CountTotal NormTotal
No Reads
droEle1
AACTGTTG---------AAAAAA-TT-TGAAA---GTTTTTGGAA----------------------------------AAAAAC--TTA------------------TATAAAATTTC--------------------------------------------------------------------------------------------------------------TTAAGTTTTT--TTTTTAA------ATTA-AAAAAAAAA-TGTAA---------------------------------TTATAT--GCAAATTAATTTTTAAAAATGAACTACAA--------------------------------C----------------------------------------------------------------------------------------------------------------------------------------------------------ATTAAAAAAC-A-------------AATGAAAATTATTAAAAAA--------------------------------TGTTCAA--------------------------ACAAA------C-----------------AACTTTA------------------------------------A-----AAAATT---------------A-----GACATAAAGTTCAAAAAGTTSizeHit CountTotal NormTotal
No Reads
droRho1
TACAT----------------------------------------------------------------------------------------------------------ACAGTATGTCAATAAAGTGTTTTGACATTGGGAAAAAAT--------------------------------------------------G----------------------------CAATTTTTCAA-GTTTCTA------TGTTATA-AAAAGTAAGTTTGC---------------------------------------------------------------------------------------------------A-----------------GCGTGTTTTCATTT------------------------------ATTTTAAATTTTA-T-TATGATTATGGTGATAT---------CTAAGAACTAATATTTAAAAAAAATTCTTTATTT----TAT-T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAT---------ATAGTATTAA-----CAAAAACAAAA-AAGAAATASizeHit CountTotal NormTotal
No Reads
droBia1
ACACTTTA---------GCG----TA--TT---GGA-------------------------------------------ATT-----------------------------TAAATATATAGAGAAAGTGAGAACTAATAAAAATAGAAA------------------------------------------------TT-----------------------------AA-AAATTTAATTTTTAAAACTAAAATT------AGCAA-ATTAA---------------------------------A------------------------------------AAAAAA------------------------------------------------------------------TAAGAAAAAATAAAATTAAGTGTTAAAAATTTTT-TAAATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT------------------------------------------------------A----------------------------------------ATATTAATATAASizeHit CountTotal NormTotal
No Reads
droTak1
CTCAATTT---------AAAAACGCA--CT---GCAAGAATATTT-------TA------------AGACTAATTAAGA--G-----CAC--------C---------ACCAGAATCTAGAGAGAAAGTGAGAA--------AATAAAAA------------------------------------------------TT-----------------------------AA-AAATTACT-GTTTAAAATTAAAATT------AACTA-ACTAA---------------------------------AAATTA--AAAAATTAAAAGTTAAAAA-AAATTAAAA--------------------------------AATTTAAAAAAATTAAAAA-----TAATTA------------------------------------------------------------------------------------------------------------------------------------------------------------AA--------TAA--------------------------------AAATTAAA--------------------------A--------TC-----------------AAC------------------------------------------------ATTTAAAAATAAA--AGTCAATTAGA-------A---TAGTAATASizeHit CountTotal NormTotal
No Reads
droEug1
ATAT-----------------------------------------------------------------------------------------------------------ACAGTATGTCAAGAAACTCTTTACACACTGACAAAAAAA--------------------------------------------------C----------------------------ATATTTTTTGA-CTTTGCA------TGCA-AAAATAACGCCTTTAGC---------------------------------------------------------------------------------------------------T-----------------ATTCCT--------------------------------------TTTCAATATCTGTTT----------AATGAATCAATATTAA--------------------------------ATA----TCT-TT----TT-------AAAGTAAGTATG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAAAAAASizeHit CountTotal NormTotal
No Reads
dm3
CAAGCGCA---------AAAGA------CTCCTGTGAAAATACTC-------TTGTTGGTGCTAAATATCCAACTAAAT--ACAC--ATA------------------CATACAGTTTGTCAAGAAACTGTTTACACACTGTGAAATAAG--------------------------------------------------T----------------------------TGAATTTTTGA-CTTTAAA------GCTA-AAAATTAAA-GGTTTTTTGCTTAA------------------------TT--------------------------------------------------------------------------------------------------------------------------------AAACGCAGTTTTTTT-ATAAAATATAATTAAACAATATTAA--------------------------------TTT----TAC-TT----ATAAATCAAAAAAC-A-------------AATTAAAAATATTAAAT---------------------------------------------------ATT--------------------------------AAA--------------------------------------------------------T--------------------A-----TACAGGAAAATAAACAACAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................................................................................................................TCAAGAAACTGTTTACACACTGTGAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27209.5519100000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000010000000000000000000004000000000000000000000000000000000001001000011000000000000000000000000124044000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----TAC-TT----ATAAATCAAAAAAC-A-------------AATT.............................................................................................................................................................................................................25205.95119000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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...........................................................................................................................................TGTGAAATAAG--------------------------------------------------T----------------------------TGAATTTTTGA-CTTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................ACACACTGTGAAATAAG--------------------------------------------------T----------------------------TGAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000
.......................................................................................................................TCAAGAAACTGTTTACACACTGTGAAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................TTTGA-CTTTAAA------GCTA-AAAATTAAA-................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAC-TT----ATAAATCAAAAAAC-A-------------AATTA............................................................................................................................................................................................................25200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................TGTGAAATAAG--------------------------------------------------T----------------------------TGAATTTTTGA-C...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.1020000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................A------------------CATACAGTTTGTCAAGAAACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000
.......................................................................................ATA------------------CATACAGTTTGTCAAGAAACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.........................................................................................A------------------CATACAGTTTGTCAAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................................................................................................................................................TTTTTGA-CTTTAAA------GCTA-AAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................CACACTGTGAAATAAG--------------------------------------------------T----------------------------TGAATTTTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TACTT----------------------------------------------------------------------------------------------------------ACAGTATGTCAAGAAACTGTTTACACACTGCGAAATAAG--------------------------------------------------T----------------------------TGAATTTTTGA-CTTTGAA------GGTA-AAAATAAAG-AGTTCTTTGCTTAA------------------------AT--------------------------------------------------------------------------------------------------------------------------------ATCCGCAATTTTT-T-AAACAATATAATAAAACAATATTTA--------------------------------TTT----TAC-TT----ATAAATCGAATAAC-A-------------AATTAAGAACATT------------------------------------------------------------------------------------------AAA--------------------------------------------------------T--------------------A-----TACAAGAAAATAAACAACAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................................................CAAGAAACTGTTTACACACTGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22136.0036822400020000000000
........................................................................................................................CAAGAAACTGTTTACACACTGCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23112.001200005700000000000
.........................................................................................................................AAGAAACTGTTTACACACTGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2119.00940401000000000000
.......................................................................................................................TCAAGAAACTGTTTACACACTGCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2414.00400003100000000000
.........................................................................................................................AAGAAACTGTTTACACACTGCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2214.00400002200000000000
.........................................................................................................................AAGAAACTGTTTACACACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19202.4048000004800000000000
........................................................................................................................CAAGAAACTGTTTACACAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19202.0541104003600000000000
.....................................................................................................................................................................................................................................TGAATTTTTGA-CTTTGAA------GGTA-AA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.00200000000000020000
.......................................................................................................................TCAAGAAACTGTTTACACACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21201.9038000002254520000000
........................................................................................................................CAAGAAACTGTTTACACACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21201.8537301301177030002000
........................................................................................................................CAAGAAACTGTTTACACACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20201.4529100002401120000000
.........................................................................................................................AAGAAACTGTTTACACAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18201.2525100024000000000000
.......................................................................................................................TCAAGAAACTGTTTACACACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22201.202400010056730101000
.........................................................................................................................AAGAAACTGTTTACACACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20201.2024001022000010000000
.............................................................................................................................AACTGTTTACACACTGCGAAATAAG--------------------------------------------------T----------------------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2621.00200000000110000000
.........................................................................................................................................................................................................................................TTTTTGA-CTTTGAA------GGTA-AAAATAAAG-A...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000010000000
.......................................................................................................................TCAAGAAACTGTTTACACAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.6513001001100100000000
......................................................................................................................GTCAAGAAACTGTTTACACACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.40871000000000000000
.....................................................................................................................TGTCAAGAAACTGTTTACACACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.10220000000000000000
................................................................................................................CAGTATGTCAAGAAACTGTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.10200000000002000000
..........................................................................................................................AGAAACTGTTTACACACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.10200100000100000000
.........................................................................................................................AAGAAACTGTTTACACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................17200.10200000000011000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA--------------------------------------------------------T--------------------A-----TACAAGAAAATAAACAAC..23120.08100000000000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAAGAAAATAAACA....16140.07100000000001000000
........................................................................................................................CAAGAAACTGTTTACACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100000000001000000
....................................................................................................................ATGTCAAGAAACTGTTTACACACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100010000000000000
..................................................................................................................GTATGTCAAGAAACTGTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100000000001000000
...................................................................................................................TATGTCAAGAAACTGTTTAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100000010000000000
.....................................................................................................................TGTCAAGAAACTGTTTACACACTGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05101000000000000000
....T----------------------------------------------------------------------------------------------------------ACAGTATGTCAAGAAACTGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05110000000000000000
......................................................................................................................GTCAAGAAACTGTTTACACAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05110000000000000000
.....................................................................................................................TGTCAAGAAACTGTTTACACAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05110000000000000000
....................................................................................................................ATGTCAAGAAACTGTTTACACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05100000001000000000
........................................................................................................................CAAGAAACTGTTTACACACC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100100000000000000
droSec2
TATAT----------------------------------------------------------------------------------------------------------ACAGTATGCCAAGAAACTGTTTACACACTGTGAAATAAT--------------------------------------------------T----------------------------TGAATTTTTGA-CTTCAAA------GGTA-AAAATAAAG-AGTTATTTGCTTTA------------------------TT--------------------------------------------------------------------------------------------------------------------------------AAACGAAATTTTTTT-ATAAAATATAATGAAACAATATTTG--------------------------------TTT----TAC-TT----ATAAATCAAAAAAT-A-------------AATTAGGAATATT------------------------------------------------------------------------------------------AAA--------------------------------------------------------T--------------------A-----TACAAGAAAATAAACAACAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................................................................................................................AAGAAACTGTTTACACACTGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................221912.2123217583712
.........................................................................................................................AAGAAACTGTTTACACACTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21201.653391527
..........................................................................................................................AGAAACTGTTTACACACTGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21191.262424000
........................................................................................................................CAAGAAACTGTTTACACACTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22201.20247953
........................................................................................................................CAAGAAACTGTTTACACACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.55116104
.........................................................................................................................AAGAAACTGTTTACACACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1531002
..........................................................................................................................AGAAACTGTTTACACACTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1532100
...........................................................................................................................GAAACTGTTTACACACTGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1022000
.........................................................................................................................AAGAAACTGTTTACACACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1021001
........................................................................................................................CAAGAAACTGTTTACACACTGTGAAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27110.0910100
........................................................................................................................CAAGAAACTGTTTACACACTGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23190.0511000
........................................................................................................................CAAGAAACTGTTTACACACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0511000
.............................................................................................................................AACTGTTTACACACTGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510010
.........................................................................................................................AAGAAACTGTTTACACACTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0511000
..........................................................................................................................AGAAACTGTTTACACACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0511000
............................................................................................................................AAACTGTTTACACACTGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0511000
droYak3
GTCTTGTA---------AATGG------CTAT---GGATTTACTA----------------------------------------------------------------------------------------AAAAACT*GAAGCGAAA------------------CATATATTTA--------TGAAAATAGAAGGTT----------------------------TA--GATCCTG-------------------------------------GCTT--ATTAATTGGGTACAATCTATTAAG-------------------------------------GAAAATTGGAGCTTAAATAGATGTAGAAAAAG-----------------GTATTCTGGAATATAATGGAA---------AA-----------------------------AGAAA-----------------------------------------------------------------------------------------------------------------------------------AAGTGTTATGACAATGAGGAGAAAAACGATTTGCGTTTA--ATTGGAGAAAATAA-----TACT--CT------------------------------------------------------TCCATTA--------------------A-----AGGAATATATTATAAAACAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
TTTTTACT---------TT----------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAAAGT----------------------------TTAGAAAAAACACTTTAAAT---------T----GTGAACAGAAAAAA---AA-----------------------------AACAAAGACAAAT---------------------------GCTATCAACACAAA--ATTGAA-AACCAAA-----TATCAAAG------------------------------------------------------C-----AAAAGA---------------G-----GAAAGAAAAACAAAAAACAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/18/2015 at 01:02 AM