ID:

dmo_1675

 Coordinate:

scaffold_6500:28802142-28802292 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-27.0 -27.0 -26.9

Flybase annnotation

exon [dmoj_GLEANR_3000:2]; CDS [Dmoj\GI18203-cds]; intron [Dmoj\GI18203-in]

Repeatable elements

NameClassFamilyStrand
Homo6DNAhAT-Pegasus+
mature
  1. scaffold_4294:806-829 +
  2. dmo_1675  scaffold_6500:28802162-28802185 +
star

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TATATTTTTAAATACATCGAAATTGAAATTTTAGCCATAGTAAATGGGCATTTTTATTAGTTGGGTTCAGGGTATCTAGTCGAGCACTCTCGACTAGAGTTTTCTTACTTGTTTTTTTTTTTTTTTTTTTTTTTAATTGATTAATATAGAATTTGCATATACCCGCCAAATTTTGCTTTAATTTAATTATATTGTCTCTAGCTTACAGCTGGGATCAGTCGCAAAGCTTCTGCAATTGCCTGCCATCCTGC
**************************************************............((((..((((..((((((((((....))))))))))...)))).)))).......................(((((((((((..((((((((((........)).))))))))..)))).)))))))............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V056
head
 V110
male body
............TACATCGAAATTGAAATTTTAGCCA...................................................................................................................................................................................................................... 25 0 20 1.00 20 16 4 0 0
.................................................................................................................................................................................................................TGAGATCAGTTGCAAAGCTGCT.................... 22 3 1 1.00 1 0 0 1 0
......................................................................GGTATCTAGTCGAGCACTCTCGAC............................................................................................................................................................. 24 0 2 0.50 1 0 1 0 0
.................................................................................................................................................................................................................TGGGATCAGTTTCAAAGCTTAT.................... 22 3 3 0.33 1 0 0 1 0
......................................................................GGTGTCTGGTCGAGCACTCTCG............................................................................................................................................................... 22 2 3 0.33 1 1 0 0 0
............TACTTCGAAATTGAAATTTTAGCC....................................................................................................................................................................................................................... 24 1 20 0.30 6 0 6 0 0
............TACATCGAAATTGAAATTTTAGCCATAG................................................................................................................................................................................................................... 28 0 20 0.25 5 4 1 0 0
...........ATACATCGAAATTGAAATTTTAGCC....................................................................................................................................................................................................................... 25 0 20 0.20 4 4 0 0 0
............TACATCGCAATTGAAATTTTAGCC....................................................................................................................................................................................................................... 24 1 20 0.15 3 0 3 0 0
............TACATCGAAATTGAAATTTTAGC........................................................................................................................................................................................................................ 23 0 20 0.15 3 0 3 0 0
.........................................................................................TCGACTAGAGTTTTCTTACTTGT........................................................................................................................................... 23 0 20 0.15 3 3 0 0 0
................TCGAAATTGAAATTTTAGCCATAGT.................................................................................................................................................................................................................. 25 0 20 0.15 3 2 1 0 0
....................................................................CGAGTATCTAGTCGAGCACTCTCGA.............................................................................................................................................................. 25 2 20 0.10 2 0 2 0 0
........................................TAAATGGGCATTTTTATTAGTTGGGT......................................................................................................................................................................................... 26 0 20 0.10 2 0 0 0 2
..................GAAATTGAAATTTTAGCC....................................................................................................................................................................................................................... 18 0 20 0.10 2 0 2 0 0
.........................................................................ATCTAGTCGAGCACTCTCGAC............................................................................................................................................................. 21 0 20 0.10 2 0 2 0 0
.............ACATCCAAATTGAAATTTTAGCCAT..................................................................................................................................................................................................................... 25 1 20 0.05 1 1 0 0 0
............TACTTCGAAATTGAAATTTTAGC........................................................................................................................................................................................................................ 23 1 20 0.05 1 0 1 0 0
........................................................................................CTCGACTAGAGTTTTCTTACTTGTTT......................................................................................................................................... 26 0 20 0.05 1 0 1 0 0
...............ATCGAAATTGAAATTTTAGCCATAGT.................................................................................................................................................................................................................. 26 0 20 0.05 1 1 0 0 0
........................GAAATTTTAGCCATAGTATT............................................................................................................................................................................................................... 20 2 20 0.05 1 1 0 0 0
...........ATACATCGAAATTGAAATTTTAGC........................................................................................................................................................................................................................ 24 0 20 0.05 1 1 0 0 0
...................AAATTGAAATTTTAGCCATAGTA................................................................................................................................................................................................................. 23 0 20 0.05 1 1 0 0 0
...................AAATTGAAATTTTAGCCATAGTAAAT.............................................................................................................................................................................................................. 26 0 20 0.05 1 1 0 0 0
........................................TAAATGGGCATTTTTATTAGTTGGGTTC....................................................................................................................................................................................... 28 0 20 0.05 1 0 0 0 1
...........AGACATCGAAATTGAAATTTTAGCC....................................................................................................................................................................................................................... 25 1 20 0.05 1 0 1 0 0
.........................................................................................TCGACTAGAGTTTTCTTACTTGTTTTT....................................................................................................................................... 27 0 20 0.05 1 1 0 0 0
.........................................AAATGGGCATTTTTATTAGTTGG........................................................................................................................................................................................... 23 0 20 0.05 1 1 0 0 0
TATATTTTTAAATACATCGAAATTG.................................................................................................................................................................................................................................. 25 0 20 0.05 1 1 0 0 0
...............ATCGAAATTGAAATTTTAGCCATA.................................................................................................................................................................................................................... 24 0 20 0.05 1 0 1 0 0
................TCGAAATTGAATTTTTAGCCATAGTA................................................................................................................................................................................................................. 26 1 20 0.05 1 1 0 0 0
........TAAATACATCGAAATTGAAATTTTAGC........................................................................................................................................................................................................................ 27 0 20 0.05 1 1 0 0 0
..................................................................................AGCACTCTCGACTAGAGTTTTCTT................................................................................................................................................. 24 0 20 0.05 1 1 0 0 0
............................................TGGGCATTTTTATTAGTTGGGT......................................................................................................................................................................................... 22 0 20 0.05 1 0 1 0 0
......................TTGAAATTTTAGCCATAGTAAATGG............................................................................................................................................................................................................ 25 0 20 0.05 1 1 0 0 0
............TAGATCGAAATTGAAATTTTAGCC....................................................................................................................................................................................................................... 24 1 20 0.05 1 0 1 0 0
......TTTAAATACATCGAAATTGAAATTTT........................................................................................................................................................................................................................... 26 0 20 0.05 1 0 1 0 0

Anti-sense strand reads

ATATAAAAATTTATGTAGCTTTAACTTTAAAATCGGTATCATTTACCCGTAAAAATAATCAACCCAAGTCCCATAGATCAGCTCGTGAGAGCTGATCTCAAAAGAATGAACAAAAAAAAAAAAAAAAAAAAAAATTAACTAATTATATCTTAAACGTATATGGGCGGTTTAAAACGAAATTAAATTAATATAACAGAGATCGAATGTCGACCCTAGTCAGCGTTTCGAAGACGTTAACGGACGGTAGGACG
**************************************************............((((..((((..((((((((((....))))))))))...)))).)))).......................(((((((((((..((((((((((........)).))))))))..)))).)))))))............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M060
embryo
 M046
female body
...........................................................CAACCCAAGTCCCATCTAGCAG.......................................................................................................................................................................... 22 3 2 0.50 1 1 0
..............................................................................................................CAAAAAAAAAAAAAAAAAAA......................................................................................................................... 20 0 20 0.20 4 0 4
..ATAAAAATTTATGTAGCTTTAACT................................................................................................................................................................................................................................. 24 0 20 0.05 1 1 0
.................................................TAAAAATAATCAACCCAAGTCCCAT................................................................................................................................................................................. 25 0 20 0.05 1 1 0
.................................CGGTATCATTTACCCGTAAAAATAAT................................................................................................................................................................................................ 26 0 20 0.05 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6500:28802092-28802342 + dmo_1675 TATATTTTTAAATACATCGA-AATTGAAAT-------TTTAGCCATAGTAAATG---------------------------------------------------------------------GGCATTTTTATTAGTT------------GGGTT-CAGGGTATC----TAGTCGAGC-ACTCTCGAC---------TAGAGTTTTCTTACTTG-----TTTTTTTTTTTTTT-----------T-TTT-TT-------------------------------------------------------TTTAATTGATTAAT-ATAGAATT-------------------------TGCATATA-------C------------------------------C--------------------C-GCCAAATTTTGCTTTAATTTAATTAT-ATTGTCTCTAGCTTACAGCTGGGAT----------------------------------------------------------------CAGTCGCA----AAGCTTCTGCAATTGCCTGCCATCCT---GC
droVir3 scaffold_12829:30134-30281 + TATATTTATATTTAAAAG---------------------------TTGT------------------------------------------------------------------------------TTTG--T-----GGTCTTGTACTTGGGTT-CAGGGTATTTTC-TAGTCGGGC-ACCACCGAC---------TAGAGCACTCTTACTTG-----T---------------------------------------------TTTACTTTACT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTCATATCCTATTAAGATCGGACCACTATATCATATAGCTGCC----------------------------------------------------------------------A
droGri2 scaffold_14588:9958-10146 + TATCTTTTCAGAAATTTCAT-TTTATATG-------TTGTATTTTTATCTA----------------TTGTTTCTTTTC------------------------------------------------------------------------ATATGTGGGTTCGTAT-TTATTT---TT-ATTTATAAT---------TAAAATTTTCC----TGTTCT-CC-TTTT-------------T-------------------------TT----------TTTTTTTTTTTTTTAATGGGAATATT-------ATT------------------------------------------TTCTTCTGC-------------------------------------C--------------------AT-TACAAAGTTGGTTTAATATATTTAT-A-------------------------------------------------------AA-----------------------------------------------------------------GTTT---TT
droWil2 scf2_1100000004577:3806909-3807118 + TATATTTATAAGTATATACTATATAAAAA--------CTTATTAATTACGAGTGGACATAAAC---------------------------------------------------------------------------C------------GATTT-GCTTGTTGCTTA-TTGTTGGGT-TC-TTTATT--TATTTTTTAAATCG---TTTTCTGTTATT-C-ATTT-------------C-------------------------AT----------TTTTTTTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTATATTTAATCCCAAAAATTCGTGGCTACCGATTAGTGATTTAATTTATTTATATTATTAT-TATT--TTA----------------------TAT---CT
dp5 XL_group1a:707204-707243 + TAGAGTTCCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTTTA--------------T----TTATTTTCCTT-TT--TCTTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---TT
droPer2 scaffold_22:1244513-1244587 + TTTTTGTATTTATTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTTT-T-TTTTTGAT-------------------------------------------------TTTAG--------------TTTA--GCTG----CATGGACT--CTGCGCTGTACTTT----------------------------AGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTA---GT
droAna3 scaffold_12841:1276-1435 + TCTATATCTATATATATCTA-TATATATA--------TTTATAAATTATAAATA---------------------------------------------------------------------TATATAGT--T-----AAGCTTCTGCTTAACTGCAAGGGTATTT-CAACTTCGGCTCCG-CTTGAA---------GTTAGCTTTCC----TT-----T-----TTTGTTTT-----------T-TTT-TT-------------------------------------------------------TATAATTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTATATAGTGGAACTC-----------------------------------------------------------------TCA---TA
droBip1 scf7180000395041:20351-20531 + ATATTCTC-ATATGGATCG--GATAAAAATTATATCCGATGTTTGCGCTAT----------------CTATCCGGTTTT------------------------------------------------------------------------AAATGCCAGGGTATAT-TAACTTCGGATCTG-CCCGAA-----GT--TACAA-TTTCTTTCTTG-----TCATTATAA-----------TTTATTTT-T-TTTTTG------ACG------------------------------ATAGAATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGT-ATTT---------------------TTATATAATTAACCACC----A---------------------CATT---TT
droKik1 scf7180000302258:261485-261663 - TATTTTTTTTAATTTTTGC---------------------------------------AAAATTAAA------------ATCTAATCTATTTTTTAATTTTTGTAAAATTAAAATGTGGTATATAT----------------------------------------------TTTATTTTTT-TTTA---------------ATTATTTAACCTATTACA-T-TTTT-------------T-------------------------TT----------TTTTTTTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTAATATTCTTGTATAAAATTGTATAATTTTT---------------------AATTAAA----TATA----A---------------------TATTTCTAG
droFic1 scf7180000454072:929974-930030 + TAAATTTTTTTTATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----T--------T----TTCTTTTTTTT-TT--TTCTTTTT--------------TTACT-------------------TAAAT--------------------------------------------------------------------------------------------AAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA---TA
droEle1 scf7180000490913:11665-11812 - TTGCTGTTTTTCTATTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTT-TT--TTGGTTCTTTGACATA------------------------------TAG-----TAATGGTAAA------ATATTTCAATT------------------TGTCAGTTCCCACTGC-------------------------------------A--------------------AT-TAC---------------------------------------GGTTTAAATTTCATCAAAATCAGACGACTATAGCATATAGCTCCC---------------------ATAGAAACAATC------------------------------GAA---AA
droRho1 scf7180000768410:5478-5673 + TGAATGCTTAATTATAA--------------------------------------------------------------AACTAAGCTACAGGATATTCTATTTATATTTAATATTACGTACATACATATTTATAACTT------------TTTTC-CAAGTTGTC---------GAAA-GCGTTTTGTTATATTTTTTAGAATG---------A-----TTTTTTTTAATTTT-------------TCCCCT-------------------------------------------------------TTGGATTTCTTTGG-ATTTAATT-------------------------TACA--------------------------------------------------------------------------------------------------------------------------------------------------AATAT---------------------TTATATAAATT----TAATTTA---------------------TATT---AT
droBia1 scf7180000302074:36036-36112 - TTTTTATTTCATGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCT--------------------------------------------------------ATTAATTTCCTATG-GCAGCTAT-------------------------ATTACATA-------G------------------------------T--------------------C-GTCAAATTTTGATAAAATT------------------------------------------------------------------------------------------------------------------------------------TAA---TT
droTak1 scf7180000412405:2468-2651 - TTTATTTTTATTTCATTTA--AATTTAAAT-------TTT-----------------------------------------------------------------------------TTGATTTACATTATTATTATTA------------T--CC-C-TAGTATAAAA-TAAAATAAA-TA-CAAAAT---------TTTTGGCTTTTTATTTG-----A----------TTT-----------A-TTT-TT-------------------------------------------------------TTAAATTGATTTAT-TTACAATATTGTTATTATTATTATCT--CTAGTTTTTTGT------------------------------------------------------------------------------------------------------------------------------------TTATTTAATTTATTTT-----------------------------------------------------------------TTA---TA
droEug1 scf7180000409106:59501-59593 + GGGTATTTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------TAGTCGCGG-CA-CTCGAC---------TATAGCGTTTCCTCTTG-----T---------------------------------------------TTTATTTTATTT------------------------------------------------------------------------------------------CAGGTTATTT--------------------------------------------------------------------------------------------------------------------------------AATTT---------------------TTATACAATTT----TTATT------------------------TAT---TC
dm3 chr2L:9779664-9779692 - TGGTTTTTTTTTTTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-TTTTTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGC---TT
droSim2 3l:23854972-23855057 - TGTTTTTTTTTTTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG-----T-----------------TTTT---------TTTTTC------ATA------------------------------TAAAAATTTACTAATAAA---------------------------------------------------------------------------------C--------------------------TAT-TAC--------AACAATCAAAAAAT-ATCAGTTCAGG-----------------------------------------------------------------------------------------------------------------CTT---GC
droSec2 scaffold_29:332876-332930 + AGTTCATTTATATTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG-----T-----------------TATTATT-TT--------T------TTTTTTATTTTATTT------------------------------ATTT---------------------------------------------------------------------------------ATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAG---AA
droYak3 v2_chrUn_149:1331-1531 - GCACTTACA-------------------------------------------------CTAGC---------------------------------------------------------------------------T------------GAGTA-ACGGGTATCAGA-TAGTCGGGG-AA-CTCGAC---------TATAGCGTTCTCTCTTG-----T--------T----TTCTTGTTTTT-TT--TCATTGCTT-------------------------------------------------TATAA--------------CATG--CCCA----CACACACATACCGCCCTCCACTATAACCATGCTAACTACTTTTTATTATATTATTTTCAAACACCAGCAAGTTTATTCAACTGC-TA----------------------------------------------------------------------------CAACGA-----------------------------------------------------------------TCCA---TT
droEre2 scaffold_4929:20503568-20503772 + TATTTCTATAAATACGTCA---------------------------------------GAAAC---------------------------------------------------------------------------T------------GAGTA-ACGGATATCTGA-TAGTGGGGG-AT-TTCGAC---------TATAGCATTCTCTCTTG-----T---------------------------------------------TATACTTTACTTTTTTTCTT----------------------GCAAAT------------------------------------------TTCTATCGC-------------------------------------T--------------------ATGCCAAAATGGCCTATATCTGGTCTATAACTAGTTCAAACTCAGAGCTCGGATCTTAACGTGATCAAACAACTTTTGCAAGAACTGGCC---------------------------------------------------------------------AT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
TATATTTTTAAATACATCGA-AATTGAAAT-------TTTAGCCATAGTAAATG---------------------------------------------------------------------GGCATTTTTATTAGTT------------GGGTT-CAGGGTATC----TAGTCGAGC-ACTCTCGAC---------TAGAGTTTTCTTACTTG-----TTTTTTTTTTTTTT-----------T-TTT-TT-------------------------------------------------------TTTAATTGATTAAT-ATAGAATT-------------------------TGCATATA-------C------------------------------C--------------------C-GCCAAATTTTGCTTTAATTTAATTAT-ATTGTCTCTAGCTTACAGCTGGGAT----------------------------------------------------------------CAGTCGCA----AAGCTTCTGCAATTGCCTGCCATCCT---GCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............TACATCGA-AATTGAAAT-------TTTAGCCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25201.00201600040
................................................................................................................................................................GGTATC----TAGTCGAGC-ACTCTCGAC---------..................................................................................................................................................................................................................................................................................................................................................................................................2420.501000010
............TACATCGA-AATTGAAAT-------TTTAGCCATAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.255400010
...........ATACATCGA-AATTGAAAT-------TTTAGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.204400000
............TACATCGA-AATTGAAAT-------TTTAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.153000030
........................................................................................................................................................................................TCGAC---------TAGAGTTTTCTTACTTG-----T...........................................................................................................................................................................................................................................................................................................................................................................23200.153300000
................TCGA-AATTGAAAT-------TTTAGCCATAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.153200010
................................................TAAATG---------------------------------------------------------------------GGCATTTTTATTAGTT------------GGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................26200.102000002
..................GA-AATTGAAAT-------TTTAGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.102000020
...................................................................................................................................................................ATC----TAGTCGAGC-ACTCTCGAC---------..................................................................................................................................................................................................................................................................................................................................................................................................21200.102000020
.......................................................................................................................................................................................CTCGAC---------TAGAGTTTTCTTACTTG-----TTT.........................................................................................................................................................................................................................................................................................................................................................................26200.051000010
...............ATCGA-AATTGAAAT-------TTTAGCCATAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
.........................GAAAT-------TTTAGCCATAGTATT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
...........ATACATCGA-AATTGAAAT-------TTTAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051100000
...................A-AATTGAAAT-------TTTAGCCATAGTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051100000
...................A-AATTGAAAT-------TTTAGCCATAGTAAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
................................................TAAATG---------------------------------------------------------------------GGCATTTTTATTAGTT------------GGGTT-C..........................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051000001
........................................................................................................................................................................................TCGAC---------TAGAGTTTTCTTACTTG-----TTTTT.......................................................................................................................................................................................................................................................................................................................................................................27200.051100000
.................................................AAATG---------------------------------------------------------------------GGCATTTTTATTAGTT------------GG...............................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051100000
TATATTTTTAAATACATCGA-AATTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051100000
...............ATCGA-AATTGAAAT-------TTTAGCCATA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000010
........TAAATACATCGA-AATTGAAAT-------TTTAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
................................................................................................................................................................................AGC-ACTCTCGAC---------TAGAGTTTTCTT......................................................................................................................................................................................................................................................................................................................................................................................24200.051100000
....................................................TG---------------------------------------------------------------------GGCATTTTTATTAGTT------------GGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000010
.......................TTGAAAT-------TTTAGCCATAGTAAATG---------------------------------------------------------------------G............................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051100000
......TTTAAATACATCGA-AATTGAAAT-------TTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000010
droVir3
TATATTTATATTTAAAAG---------------------------TTGT------------------------------------------------------------------------------TTTG--T-----GGTCTTGTACTTGGGTT-CAGGGTATTTTC-TAGTCGGGC-ACCACCGAC---------TAGAGCACTCTTACTTG-----T---------------------------------------------TTTACTTTACT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTCATATCCTATTAAGATCGGACCACTATATCATATAGCTGCC----------------------------------------------------------------------ASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................................................................................................................T-----GGTCTTGTACTTGGGTT-CAGGG......................................................................................................................................................................................................................................................................................................................................................................................................................................2361.338001000011000000000000000010002000020000000000000000000000000000
...................................................................................................................................................................ATTTTC-TAGTCGGGC-ACCA................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000001000000000000000000000000000000000000000
.....................................................................................................................................T-----GGTCTTGTACTTGGGTT-CAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................2260.835000000000000000000000000021200000000000000000000000000000000000
.....................................................................................................................................T-----GGTCTTGTACTTGGGTT-CAGGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................2460.674000000000000000000001000020001000000000000000000000000000000000
.....................................................................................................................................T-----GGTCTTGTACTTGGGTT-CAGGGTAT...................................................................................................................................................................................................................................................................................................................................................................................................................................2660.503000000000000000000000000000000000020100000000000000000000000000
..............................................TGT------------------------------------------------------------------------------TTTG--T-----GGTCTTGTACTTGGGTT-C..........................................................................................................................................................................................................................................................................................................................................................................................................................................2650.402000000000000000000000000000000010000000100000000000000000000000
.....................................................................................................................................T-----GGTCTTGTACTTGGGTT-CAG........................................................................................................................................................................................................................................................................................................................................................................................................................................2160.332000000010000000000000000000100000000000000000000000000000000000
................................................T------------------------------------------------------------------------------TTTG--T-----GGTCTTGTACTTGGGTT-CAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................2760.332000000000000000000000000000000020000000000000000000000000000000
...............................................................................................................................................TTGTACTTGGGTT-CAGGGTATTTTC-..............................................................................................................................................................................................................................................................................................................................................................................................................................25130.233000000000000000000000001000010000000100000000000000000000000000
.....................................................................................................................................T-----GGTCTTGTACTTGGGTT-CAGGGTA....................................................................................................................................................................................................................................................................................................................................................................................................................................2560.171000000000000000000000000000100000000000000000000000000000000000
...........................................................................................................................................GGTCTTGTACTTGGGTT-CAGGG......................................................................................................................................................................................................................................................................................................................................................................................................................................2260.171001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................T-----GGTCTTGTACTTGGGTT-CAGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................2360.171000000001000000000000000000000000000000000000000000000000000000
.....................................................................................................................................T-----GGTCTTGTACTTGGGTT-CAGGGTC....................................................................................................................................................................................................................................................................................................................................................................................................................................2560.171000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................TTTG--T-----GGTCTTGTACTTGGGTT-CAG........................................................................................................................................................................................................................................................................................................................................................................................................................................2560.171000000000000000000000000000000000000000100000000000000000000000
.....................................................................................................................................T-----GGTCTTGTACTTGGGTT-CAGGGTATTT.................................................................................................................................................................................................................................................................................................................................................................................................................................2860.171000000000000000000000000000000000000100000000000000000000000000
................................................................................................................................................TGTACTTGGGTT-CAGGGTATTTTC-..............................................................................................................................................................................................................................................................................................................................................................................................................................24130.152000000000000000000000000000100001000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCCTATTAAGATCGGACCACTAT.....................................................................................25200.153000000000000000000000000000000000020000100000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGATCGGACCACTATATCATATA.............................................................................25200.153000000000300000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGATCGGACCACTATATCAT................................................................................22200.153000000000000000000000000000000000030000000000000000000000000000
.................................................................................................................................TG--T-----GGTCTTGTACTTGGGTT-CA.........................................................................................................................................................................................................................................................................................................................................................................................................................................2270.141000000000000000000000000000001000000000000000000000000000000000
..............AAAG---------------------------TTGT------------------------------------------------------------------------------TTTG--T-----GGTCTTGTACTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................2570.141000000000000000000000000000001000000000000000000000000000000000
........TATTTAAAAG---------------------------TTGT------------------------------------------------------------------------------TTTG--T-----GGTCTTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................2670.141000000000000000000000000000000100000000000000000000000000000000
.....................................................................................................................................................TTGGGTT-CAGGGTATTTTC-TAGTCGGG......................................................................................................................................................................................................................................................................................................................................................................................................................2770.141001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................T-----GGTCTTGTACTTGGGTT-C..........................................................................................................................................................................................................................................................................................................................................................................................................................................1970.141000000000000000000000000000000000010000000000000000000000000000
............TAAAAG---------------------------TTGT------------------------------------------------------------------------------TTTG--T-----GGTCTTGTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................2470.141000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................TTG--T-----GGTCTTGTACTTGGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................2070.141001000000000000000000000000000000000000000000000000000000000000
........TATTTAAAAG---------------------------TTGT------------------------------------------------------------------------------TTTG--T-----GGTCTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2580.131000000000000000000000000000000010000000000000000000000000000000
..........TTTAAAAG---------------------------TTGT------------------------------------------------------------------------------TTTG--T-----GGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2180.131000000000000000000000000100000000000000000000000000000000000000
..........................................................................................................................................................TT-CAGGGTATTTTC-TAGTCGGGC-....................................................................................................................................................................................................................................................................................................................................................................................................................2380.131000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................................................TACTTGGGTT-CAGGGTATTTTC-TAGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................2790.111000000000000000000000000000000010000000000000000000000000000000
..................................................................................................................................................TACTTGGGTT-CAGGGTATTTTC-TAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................2690.111001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCCTATTAAGATCGGACCACTATAT...................................................................................27200.102000000000000000000000000000200000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGATCGGACCACTATATCATATAGCT..........................................................................28200.102000000000000000000000000000000000000000000000000000000000000020
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTATTAAGATCGGACCACTATATCATA...............................................................................28200.051000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAGATCGGACCACTAT.....................................................................................19200.051000000000000000000100000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCCTATTAAGATCGGACC..........................................................................................20200.051000000100000000000000000000000000000000000000000000000000000000
droGri2
TATCTTTTCAGAAATTTCAT-TTTATATG-------TTGTATTTTTATCTA----------------TTGTTTCTTTTC------------------------------------------------------------------------ATATGTGGGTTCGTAT-TTATTT---TT-ATTTATAAT---------TAAAATTTTCC----TGTTCT-CC-TTTT-------------T-------------------------TT----------TTTTTTTTTTTTTTAATGGGAATATT-------ATT------------------------------------------TTCTTCTGC-------------------------------------C--------------------AT-TACAAAGTTGGTTTAATATATTTAT-A-------------------------------------------------------AA-----------------------------------------------------------------GTTT---TTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TATATTTATAAGTATATACTATATAAAAA--------CTTATTAATTACGAGTGGACATAAAC---------------------------------------------------------------------------C------------GATTT-GCTTGTTGCTTA-TTGTTGGGT-TC-TTTATT--TATTTTTTAAATCG---TTTTCTGTTATT-C-ATTT-------------C-------------------------AT----------TTTTTTTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTATATTTAATCCCAAAAATTCGTGGCTACCGATTAGTGATTTAATTTATTTATATTATTAT-TATT--TTA----------------------TAT---CTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................................................................................................................................................................................................TTTAAATCG---TTTTCTGTT...............................................................................................................................................................................................................................................................................................................................................................................1820.50100010
dp5
TAGAGTTCCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTTTA--------------T----TTATTTTCCTT-TT--TCTTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---TTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
TTTTTGTATTTATTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTTT-T-TTTTTGAT-------------------------------------------------TTTAG--------------TTTA--GCTG----CATGGACT--CTGCGCTGTACTTT----------------------------AGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTA---GTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
TCTATATCTATATATATCTA-TATATATA--------TTTATAAATTATAAATA---------------------------------------------------------------------TATATAGT--T-----AAGCTTCTGCTTAACTGCAAGGGTATTT-CAACTTCGGCTCCG-CTTGAA---------GTTAGCTTTCC----TT-----T-----TTTGTTTT-----------T-TTT-TT-------------------------------------------------------TATAATTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTATATAGTGGAACTC-----------------------------------------------------------------TCA---TASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................................................................................................................................TGCAAGGGTATTT-CAACTTCGGCTCC...................................................................................................................................................................................................................................................................................................................................................................................................................26200.408080000
....................................................................................................................................................................TTT-CAACTTCGGCTCCG-CTTGAA---------GT................................................................................................................................................................................................................................................................................................................................................................................................25200.204040000
............................................................................................................................................................CAAGGGTATTT-CAACTTCGGCTCC...................................................................................................................................................................................................................................................................................................................................................................................................................24200.102020000
..........................................................................................................................................................TGCAAGGGTATTT-CAACTTCGGCTC....................................................................................................................................................................................................................................................................................................................................................................................................................25200.102020000
...................................................................................................................................................................................CCG-CTTGAA---------GTTAGCTTTCC----TT-----T-----T.....................................................................................................................................................................................................................................................................................................................................................................24200.051100000
.............................................................................................................................................................................TCGGCTCCG-CTTGAA---------GTTAGCTTTCC----T..................................................................................................................................................................................................................................................................................................................................................................................27200.051010000
.........................................................................................................................................................CTGCAAGGGTATTT-CAACTTCGGCTCC...................................................................................................................................................................................................................................................................................................................................................................................................................27200.051010000
...........................................................................................................................................................GCAAGGGTATTT-CAACTTCGGCTC....................................................................................................................................................................................................................................................................................................................................................................................................................24200.051010000
............................................................................................................................................................CAAGGGTATTT-CAACTTCGGC......................................................................................................................................................................................................................................................................................................................................................................................................................21200.051010000
......................................................................................................................................................................................................GTTAGCTTTCC----TT-----T-----TTTGTTTT-----------T-TT...............................................................................................................................................................................................................................................................................................................................................25200.051010000
..............................................................................................................................................................AGGGTATTT-CAACTTCGGCTCCG-CTTG.............................................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
......................................................................................................................................................TAACTGCAAGGGTATTT-CAAC............................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000001
...........................................................................................................................................................GCAAGGGTATTT-CAACTTCGGCTCC...................................................................................................................................................................................................................................................................................................................................................................................................................25200.051100000
.........................................................................................................................................................CTGCAAGGGTATTT-CAACTTCGGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................25200.051010000
........................................................................................................................................................................................................TAGCTTTCC----TT-----T-----TTTGTTTT-----------T-TTT-TC-------------------------------------------------------....................................................................................................................................................................................................................................................................................26200.051010000
.....................................................................................................................................................................TT-CAACTTCGGCTCCG-CTTGA............................................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
..................................................................................................................................................................TATTT-CAACTTCGGCTCCG-CTTGAA---------GC................................................................................................................................................................................................................................................................................................................................................................................................27200.051010000
.......................................................................................................................................................................................CTTGAA---------GTTAGCTTTCC----TT-----T-----TTT...................................................................................................................................................................................................................................................................................................................................................................23200.051010000
.............................................................................................................................................................AAGGGTATTT-CAACTTCGGCTCCG-.................................................................................................................................................................................................................................................................................................................................................................................................................24200.051100000
droBip1
ATATTCTC-ATATGGATCG--GATAAAAATTATATCCGATGTTTGCGCTAT----------------CTATCCGGTTTT------------------------------------------------------------------------AAATGCCAGGGTATAT-TAACTTCGGATCTG-CCCGAA-----GT--TACAA-TTTCTTTCTTG-----TCATTATAA-----------TTTATTTT-T-TTTTTG------ACG------------------------------ATAGAATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGT-ATTT---------------------TTATATAATTAACCACC----A---------------------CATT---TTSizeHit CountTotal NormTotal
No Reads
droKik1
TATTTTTTTTAATTTTTGC---------------------------------------AAAATTAAA------------ATCTAATCTATTTTTTAATTTTTGTAAAATTAAAATGTGGTATATAT----------------------------------------------TTTATTTTTT-TTTA---------------ATTATTTAACCTATTACA-T-TTTT-------------T-------------------------TT----------TTTTTTTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTAATATTCTTGTATAAAATTGTATAATTTTT---------------------AATTAAA----TATA----A---------------------TATTTCTAGSizeHit CountTotal NormTotal
No Reads
droFic1
TAAATTTTTTTTATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----T--------T----TTCTTTTTTTT-TT--TTCTTTTT--------------TTACT-------------------TAAAT--------------------------------------------------------------------------------------------AAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA---TASizeHit CountTotal NormTotal
No Reads
droEle1
TTGCTGTTTTTCTATTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTT-TT--TTGGTTCTTTGACATA------------------------------TAG-----TAATGGTAAA------ATATTTCAATT------------------TGTCAGTTCCCACTGC-------------------------------------A--------------------AT-TAC---------------------------------------GGTTTAAATTTCATCAAAATCAGACGACTATAGCATATAGCTCCC---------------------ATAGAAACAATC------------------------------GAA---AASizeHit CountTotal NormTotal
No Reads
droRho1
TGAATGCTTAATTATAA--------------------------------------------------------------AACTAAGCTACAGGATATTCTATTTATATTTAATATTACGTACATACATATTTATAACTT------------TTTTC-CAAGTTGTC---------GAAA-GCGTTTTGTTATATTTTTTAGAATG---------A-----TTTTTTTTAATTTT-------------TCCCCT-------------------------------------------------------TTGGATTTCTTTGG-ATTTAATT-------------------------TACA--------------------------------------------------------------------------------------------------------------------------------------------------AATAT---------------------TTATATAAATT----TAATTTA---------------------TATT---ATSizeHit CountTotal NormTotal
No Reads
droBia1
TTTTTATTTCATGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCT--------------------------------------------------------ATTAATTTCCTATG-GCAGCTAT-------------------------ATTACATA-------G------------------------------T--------------------C-GTCAAATTTTGATAAAATT------------------------------------------------------------------------------------------------------------------------------------TAA---TTSizeHit CountTotal NormTotal
No Reads
droTak1
TTTATTTTTATTTCATTTA--AATTTAAAT-------TTT-----------------------------------------------------------------------------TTGATTTACATTATTATTATTA------------T--CC-C-TAGTATAAAA-TAAAATAAA-TA-CAAAAT---------TTTTGGCTTTTTATTTG-----A----------TTT-----------A-TTT-TT-------------------------------------------------------TTAAATTGATTTAT-TTACAATATTGTTATTATTATTATCT--CTAGTTTTTTGT------------------------------------------------------------------------------------------------------------------------------------TTATTTAATTTATTTT-----------------------------------------------------------------TTA---TASizeHit CountTotal NormTotal
No Reads
droEug1
GGGTATTTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------TAGTCGCGG-CA-CTCGAC---------TATAGCGTTTCCTCTTG-----T---------------------------------------------TTTATTTTATTT------------------------------------------------------------------------------------------CAGGTTATTT--------------------------------------------------------------------------------------------------------------------------------AATTT---------------------TTATACAATTT----TTATT------------------------TAT---TCSizeHit CountTotal NormTotal
No Reads
dm3
TGGTTTTTTTTTTTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-TTTTTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGC---TTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...TTTTTTTTTTTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-TTTTTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG......23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..GTTTTTTTTTTTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-TTTTT............................................................................................................................................................................................................................................................................................................................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
TGGTTTTTTTTTTTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-TT...............................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..GTTTTTTTTTTTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-TTTT.............................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TTTTTTTTTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-TTTTTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGC---TT24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TGTTTTTTTTTTTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG-----T-----------------TTTT---------TTTTTC------ATA------------------------------TAAAAATTTACTAATAAA---------------------------------------------------------------------------------C--------------------------TAT-TAC--------AACAATCAAAAAAT-ATCAGTTCAGG-----------------------------------------------------------------------------------------------------------------CTT---GCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TAC--------AACAATCAAAAAAT-ATCAGTTCAGG-----------------------------------------------------------------------------------------------------------------C.......2912.00200000000200000000
droSec2
AGTTCATTTATATTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG-----T-----------------TATTATT-TT--------T------TTTTTTATTTTATTT------------------------------ATTT---------------------------------------------------------------------------------ATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAG---AASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
GCACTTACA-------------------------------------------------CTAGC---------------------------------------------------------------------------T------------GAGTA-ACGGGTATCAGA-TAGTCGGGG-AA-CTCGAC---------TATAGCGTTCTCTCTTG-----T--------T----TTCTTGTTTTT-TT--TCATTGCTT-------------------------------------------------TATAA--------------CATG--CCCA----CACACACATACCGCCCTCCACTATAACCATGCTAACTACTTTTTATTATATTATTTTCAAACACCAGCAAGTTTATTCAACTGC-TA----------------------------------------------------------------------------CAACGA-----------------------------------------------------------------TCCA---TTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......CA-------------------------------------------------CTAGC---------------------------------------------------------------------------T------------GAGTA-ACGGGTATCAGA-..............................................................................................................................................................................................................................................................................................................................................................................................................................252012.252450245000000000
...........................................................................................................................................................A-ACGGGTATCAGA-TAGTCGGGG-AA-.................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100000010000
droEre2
TATTTCTATAAATACGTCA---------------------------------------GAAAC---------------------------------------------------------------------------T------------GAGTA-ACGGATATCTGA-TAGTGGGGG-AT-TTCGAC---------TATAGCATTCTCTCTTG-----T---------------------------------------------TATACTTTACTTTTTTTCTT----------------------GCAAAT------------------------------------------TTCTATCGC-------------------------------------T--------------------ATGCCAAAATGGCCTATATCTGGTCTATAACTAGTTCAAACTCAGAGCTCGGATCTTAACGTGATCAAACAACTTTTGCAAGAACTGGCC---------------------------------------------------------------------ATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................................................................................T------------GAGTA-ACGGATATCTGA-TAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000001

Generated: 05/18/2015 at 12:59 AM