ID:

dmo_167

 Coordinate:

scaffold_6496:23382293-23382342 -

 Confidence:

Known Ortholog

 Class:

Canonical miRNA

 Genomic Locale:

intergenic

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-20.1

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

ATTCCATTTTCTCGTTTTCCTCTGTCGTTTTGCGTTGATTTCATATTTCATGTGATGTGACGTAGTGGAACATTCCTGGCGTTGCCCCAGCAATCCGTGAGAAATGGAGGATGAGATGATGTCGCACAGCTCTATCAAATGTCAGGAGTA

***********************************...((((((.(((((((.((((((((((...(((....)))..))))))).......)))))))))).))))))......*********************************** 		Read size # Mismatch Hit Count Total Norm Total M046

female body

 V110

male body		 V056

head

 V049

head

 M060

embryo

 V041

embryo
..................................................TGTGATGTGACGTAGTGGAAC............................................................................... 21 0 1 62850.00 62850 55929 6786 72 52 6 5
..................................................TGTGATGTGACGTAGTGGAACA.............................................................................. 22 0 1 55159.00 55159 48996 5995 82 69 7 10
..................................................TGTGATGTGACGTAGTGGAA................................................................................ 20 0 1 37382.00 37382 32973 4270 67 69 3 0
..................................................TGTGATGTGACGTAGTGGA................................................................................. 19 0 1 4882.00 4882 4364 488 20 9 1 0
...................................................GTGATGTGACGTAGTGGAAC............................................................................... 20 0 1 4677.00 4677 4674 3 0 0 0 0
...................................................GTGATGTGACGTAGTGGAACA.............................................................................. 21 0 1 4251.00 4251 4247 3 1 0 0 0
..................................................TGTGATGTGACGTAGTGGAACAA............................................................................. 23 1 1 3459.00 3459 2428 1017 11 3 0 0
...................................................GTGATGTGACGTAGTGGAA................................................................................ 19 0 1 2477.00 2477 2476 1 0 0 0 0
..................................................TGTGATGTGACGTAGTGGAACAT............................................................................. 23 0 1 1698.00 1698 1360 333 2 3 0 0
..................................................TGTGATGTGACGTAGTGGAAA............................................................................... 21 1 1 1429.00 1429 1213 213 3 0 0 0
.................................................ATGTGATGTGACGTAGTGGAA................................................................................ 21 0 1 1105.00 1105 924 173 3 5 0 0
.................................................ATGTGATGTGACGTAGTGGAAC............................................................................... 22 0 1 931.00 931 777 148 5 1 0 0
..................................................TGTGATGTGACGTAGTGGAACT.............................................................................. 22 1 1 675.00 675 594 79 1 1 0 0
..................................................TGTGATGTGACGTAGTGGAAT............................................................................... 21 1 1 406.00 406 358 46 2 0 0 0
...................................................GTGATGTGACGTAGTGGA................................................................................. 18 0 1 302.00 302 302 0 0 0 0 0
..................................................TGTGATGTGACGTAGTGGAACAC............................................................................. 23 1 1 259.00 259 229 29 0 1 0 0
...................................................GTGATGTGACGTAGTGGAACAA............................................................................. 22 1 1 217.00 217 215 2 0 0 0 0
.................................................ATGTGATGTGACGTAGTGGA................................................................................. 20 0 1 213.00 213 185 28 0 0 0 0
..................................................TGTGATGTGACGTAGTGG.................................................................................. 18 0 1 189.00 189 183 6 0 0 0 0
....................................................TGATGTGACGTAGTGGAAC............................................................................... 19 0 1 185.00 185 182 3 0 0 0 0
..................................................TGTGATGTGACATAGTGGAAC............................................................................... 21 1 1 163.00 163 158 5 0 0 0 0
..................................................TGTGATGTGACGTAGTGGAACAAA............................................................................ 24 2 1 154.00 154 98 55 1 0 0 0
..................................................TGTGATGTGACGTAGTGGAACAG............................................................................. 23 1 1 154.00 154 127 27 0 0 0 0
....................................................TGATGTGACGTAGTGGAACA.............................................................................. 20 0 1 154.00 154 150 4 0 0 0 0
..................................................TGTGATGTGACGTAGTGGAACAAT............................................................................ 24 1 1 145.00 145 99 45 0 1 0 0
.................................................ATGTGATGTGACGTAGTGGAAT............................................................................... 22 1 1 138.00 138 103 35 0 0 0 0
..................................................TGTGATGTGACGTAGTGGAT................................................................................ 20 1 1 138.00 138 115 23 0 0 0 0
..................................................TGTGATGTGACGTAGTGGAACATT............................................................................ 24 0 1 136.00 136 115 19 1 1 0 0
...................................................GTGATGTGACGTAGTGGAAA............................................................................... 20 1 1 131.00 131 131 0 0 0 0 0
..................................................TGTGATGTGACATAGTGGAACA.............................................................................. 22 1 1 121.00 121 120 1 0 0 0 0
...................................................GTGATGTGACGTAGTGGAACAT............................................................................. 22 0 1 118.00 118 118 0 0 0 0 0
....................................................TGATGTGACGTAGTGGAA................................................................................ 18 0 1 108.00 108 103 5 0 0 0 0
..................................................TGTGATGTGACATAGTGGAA................................................................................ 20 1 1 101.00 101 98 3 0 0 0 0
.................................................ATGTGATGTGACGTAGTGGAAA............................................................................... 22 1 1 71.00 71 58 13 0 0 0 0
..................................................TGTGATGTGACCTAGTGGAACA.............................................................................. 22 1 1 71.00 71 69 2 0 0 0 0
.................................................ATGTGATGTGACGTAGTGGAACA.............................................................................. 23 0 1 62.00 62 56 6 0 0 0 0
..................................................TGTGATGTGACCTAGTGGAAC............................................................................... 21 1 1 58.00 58 55 3 0 0 0 0
..................................................TGTGATGTGACTTAGTGGAAC............................................................................... 21 1 1 58.00 58 53 5 0 0 0 0
..................................................TGTGATGTGACGTAGTGGAAAA.............................................................................. 22 1 1 56.00 56 45 10 1 0 0 0
..................................................TGTGATGTGACTTAGTGGAACA.............................................................................. 22 1 1 54.00 54 51 3 0 0 0 0
..................................................TGTGATGTGACGTATTGGAAC............................................................................... 21 1 1 51.00 51 44 7 0 0 0 0
..................................................TGTGATGTGACGTAGTGGAACTT............................................................................. 23 1 1 50.00 50 40 10 0 0 0 0
.................................................CTGTGATGTGACGTAGTGGAAC............................................................................... 22 1 1 48.00 48 46 2 0 0 0 0
...................................................GTGATGTGACGTAGTGGAACT.............................................................................. 21 1 1 45.00 45 45 0 0 0 0 0
..................................................TGTGATGTGACGTAGTGGAACG.............................................................................. 22 1 1 42.00 42 39 3 0 0 0 0
.................................................CTGTGATGTGACGTAGTGGAACA.............................................................................. 23 1 1 41.00 41 41 0 0 0 0 0
.................................................TTGTGATGTGACGTAGTGGAAC............................................................................... 22 1 1 40.00 40 40 0 0 0 0 0
..................................................TGCGATGTGACGTAGTGGAAC............................................................................... 21 1 1 40.00 40 27 13 0 0 0 0
..................................................TGTGATGTGACTTAGTGGAA................................................................................ 20 1 1 40.00 40 34 6 0 0 0 0
..................................................TTTGATGTGACGTAGTGGAA................................................................................ 20 1 1 39.00 39 31 7 0 0 1 0
..................................................TTTGATGTGACGTAGTGGAACA.............................................................................. 22 1 1 38.00 38 28 9 0 0 1 0
..................................................TTTGATGTGACGTAGTGGAAC............................................................................... 21 1 1 37.00 37 29 7 0 0 1 0
..................................................TGTGATGTGACGTAGTGGAAG............................................................................... 21 1 1 36.00 36 31 5 0 0 0 0
..................................................TGTGATGTGACCTAGTGGAA................................................................................ 20 1 1 36.00 36 35 1 0 0 0 0
..................................................TGTGATGTGGCGTAGTGGAACA.............................................................................. 22 1 1 36.00 36 27 8 1 0 0 0
..................................................TCTGATGTGACGTAGTGGAAC............................................................................... 21 1 1 35.00 35 20 14 0 0 1 0
..................................................TGTGATGTGGCGTAGTGGAAC............................................................................... 21 1 1 33.00 33 26 7 0 0 0 0
..................................................TGTGATGTGACGTAGTGGAG................................................................................ 20 1 1 33.00 33 20 12 1 0 0 0
..................................................TGTGATGTGACGTAGTGGAATT.............................................................................. 22 2 1 32.00 32 28 4 0 0 0 0
...................................................GTGATGTGACGGAGTGGAAC............................................................................... 20 1 1 32.00 32 32 0 0 0 0 0
..................................................TGTGATATGACGTAGTGGAAC............................................................................... 21 1 1 32.00 32 31 1 0 0 0 0
..................................................TGTGATGTGACGTATTGGAA................................................................................ 20 1 1 32.00 32 22 10 0 0 0 0
..................................................TGTGATGTGACGTAGCGGAACA.............................................................................. 22 1 1 32.00 32 24 8 0 0 0 0
..................................................TGTGATGCGACGTAGTGGAACA.............................................................................. 22 1 1 32.00 32 25 6 1 0 0 0
..................................................TGTGATGTGACGTAGTGGAACAAAA........................................................................... 25 3 1 31.00 31 18 13 0 0 0 0
..................................................TGTGATGTGACGTAGTGGAGC............................................................................... 21 1 1 31.00 31 26 5 0 0 0 0
.................................................ATGTGATGTGACGTAGTGG.................................................................................. 19 0 1 31.00 31 29 2 0 0 0 0
..................................................TGTGATGTGACGTAGTGGAACC.............................................................................. 22 1 1 31.00 31 26 3 2 0 0 0
..................................................TGTGATATGACGTAGTGGAACA.............................................................................. 22 1 1 30.00 30 26 4 0 0 0 0
...................................................GTGATGTGACGTAGTGGAAT............................................................................... 20 1 1 30.00 30 30 0 0 0 0 0
..................................................TGTGATGTGACGCAGTGGAAC............................................................................... 21 1 1 30.00 30 20 10 0 0 0 0
.................................................CTGTGATGTGACGTAGTGGAA................................................................................ 21 1 1 30.00 30 29 1 0 0 0 0
..................................................TGTGATGCGACGTAGTGGAAC............................................................................... 21 1 1 30.00 30 22 7 1 0 0 0
..................................................TGTGATGTGACGTAGCGGAAC............................................................................... 21 1 1 29.00 29 24 5 0 0 0 0
..................................................TGCGATGTGACGTAGTGGAACA.............................................................................. 22 1 1 29.00 29 23 5 0 0 1 0
.................................................GTGTGATGTGACGTAGTGGAAC............................................................................... 22 1 1 29.00 29 28 1 0 0 0 0
.....................................................GATGTGACGTAGTGGAACA.............................................................................. 19 0 1 29.00 29 28 1 0 0 0 0
..................................................CGTGATGTGACGTAGTGGAAC............................................................................... 21 1 1 28.00 28 21 7 0 0 0 0
.....................................................GATGTGACGTAGTGGAAC............................................................................... 18 0 1 28.00 28 28 0 0 0 0 0
.................................................TTGTGATGTGACGTAGTGGAA................................................................................ 21 1 1 28.00 28 28 0 0 0 0 0
..................................................TGTGGTGTGACGTAGTGGAACA.............................................................................. 22 1 1 28.00 28 27 1 0 0 0 0
.................................................TTGTGATGTGACGTAGTGGAACA.............................................................................. 23 1 1 27.00 27 27 0 0 0 0 0
..................................................TGTGATGTGACGTAGTGTAAC............................................................................... 21 1 1 27.00 27 12 13 1 1 0 0
.................................................GTGTGATGTGACGTAGTGGAA................................................................................ 21 1 1 26.00 26 26 0 0 0 0 0
..................................................TGTGATGTGACGTAGTGAAC................................................................................ 20 2 1 26.00 26 19 7 0 0 0 0
..................................................TGAGATGTGACGTAGTGGAAC............................................................................... 21 1 1 26.00 26 21 5 0 0 0 0
..................................................TGTGATGTGACGTAGTTGAACA.............................................................................. 22 1 1 26.00 26 19 7 0 0 0 0
..................................................TGTGATTTGACGTAGTGGAAC............................................................................... 21 1 1 25.00 25 20 5 0 0 0 0
..................................................TGTGATGTGACGTAGGGGAAC............................................................................... 21 1 1 25.00 25 23 2 0 0 0 0
..................................................TGCGATGTGACGTAGTGGAA................................................................................ 20 1 1 25.00 25 22 3 0 0 0 0
..................................................TGTGATGTGACGTAGTTGAAC............................................................................... 21 1 1 25.00 25 12 12 0 1 0 0
..................................................TGTGGTGTGACGTAGTGGAAC............................................................................... 21 1 1 25.00 25 20 5 0 0 0 0
..................................................CGTGATGTGACGTAGTGGAACA.............................................................................. 22 1 1 25.00 25 18 7 0 0 0 0
..................................................TGTGATGTGACGTAGTGGAC................................................................................ 20 1 1 24.00 24 19 5 0 0 0 0
..................................................TGTGATGTGACGCAGTGGAACA.............................................................................. 22 1 1 24.00 24 19 5 0 0 0 0
..................................................TGGGATGTGACGTAGTGGAAC............................................................................... 21 1 1 23.00 23 19 2 2 0 0 0
..................................................TGTGATGTGACGTAGTGGGAC............................................................................... 21 1 1 23.00 23 22 1 0 0 0 0
..................................................TGTGATGTGACGTATTGGAACA.............................................................................. 22 1 1 23.00 23 20 3 0 0 0 0
..................................................TGTGATGTGACGTGGTGGAAC............................................................................... 21 1 1 23.00 23 16 7 0 0 0 0
.................................................GTGTGATGTGACGTAGTGGAACA.............................................................................. 23 1 1 22.00 22 22 0 0 0 0 0
..................................................CGTGATGTGACGTAGTGGAA................................................................................ 20 1 1 22.00 22 19 3 0 0 0 0
..................................................TGTGGTGTGACGTAGTGGAA................................................................................ 20 1 1 22.00 22 17 4 1 0 0 0
..................................................TGTGATGTGACGTAGTGGAGCA.............................................................................. 22 1 1 22.00 22 19 3 0 0 0 0
..................................................TGTGATGTGACGTAGTGGAACATTT........................................................................... 25 1 1 21.00 21 19 2 0 0 0 0
......................................................ATGTGACGTAGTGGAACA.............................................................................. 18 0 1 21.00 21 21 0 0 0 0 0
..................................................TGTGATTTGACGTAGTGGAACA.............................................................................. 22 1 1 20.00 20 9 11 0 0 0 0
..................................................TGTGATGTGACGTAGGGGAACA.............................................................................. 22 1 1 20.00 20 17 3 0 0 0 0
..................................................TGTGATGTGGCGTAGTGGAA................................................................................ 20 1 1 20.00 20 16 3 1 0 0 0
..................................................TGTGATGTGACGTAGTCGAACA.............................................................................. 22 1 1 20.00 20 14 5 1 0 0 0
..................................................TGTGATGTGACGTAGTTGAA................................................................................ 20 1 1 19.00 19 5 14 0 0 0 0
..................................................TGTGATGTGACGTAGAGGAAC............................................................................... 21 1 1 19.00 19 17 1 1 0 0 0
..................................................TGAGATGTGACGTAGTGGAACA.............................................................................. 22 1 1 19.00 19 18 1 0 0 0 0
..................................................TGTGACGTGACGTAGTGGAACA.............................................................................. 22 1 1 19.00 19 15 3 0 1 0 0
...................................................GTGATGTGACGTAGTGGAACAC............................................................................. 22 1 1 19.00 19 19 0 0 0 0 0
..................................................TCTGATGTGACGTAGTGGAACA.............................................................................. 22 1 1 19.00 19 12 7 0 0 0 0
..................................................TGTGATTTGACGTAGTGGAA................................................................................ 20 1 1 19.00 19 17 2 0 0 0 0
..................................................TGTGATGTGACGTAGCGGAA................................................................................ 20 1 1 18.00 18 13 4 0 1 0 0
..................................................TGTGATGTGACGTAGTGGGA................................................................................ 20 1 1 17.00 17 10 4 0 3 0 0
..................................................TATGATGTGACGTAGTGGAAC............................................................................... 21 1 1 17.00 17 15 2 0 0 0 0
..................................................TGGGATGTGACGTAGTGGAACA.............................................................................. 22 1 1 17.00 17 11 4 1 1 0 0
..................................................GGTGATGTGACGTAGTGGAAC............................................................................... 21 1 1 17.00 17 15 2 0 0 0 0
..................................................TGTGATGTGACGTAGAGGAACA.............................................................................. 22 1 1 17.00 17 15 2 0 0 0 0
..................................................TGAGATGTGACGTAGTGGAA................................................................................ 20 1 1 17.00 17 16 1 0 0 0 0
..................................................TGTGATGTGACGTAGTGGGACA.............................................................................. 22 1 1 17.00 17 16 1 0 0 0 0
..................................................TGTGATGTGACGTAGTGCAAC............................................................................... 21 1 1 16.00 16 13 3 0 0 0 0
..................................................TCTGATGTGACGTAGTGGAA................................................................................ 20 1 1 16.00 16 11 5 0 0 0 0
...................................................GTGATGTGACGGAGTGGAACA.............................................................................. 21 1 1 16.00 16 16 0 0 0 0 0
..................................................TGTGATATGACGTAGTGGAA................................................................................ 20 1 1 16.00 16 15 1 0 0 0 0
..................................................GGTGATGTGACGTAGTGGAACA.............................................................................. 22 1 1 15.00 15 15 0 0 0 0 0
..................................................TGTGATGTGACGTAGTGAAACA.............................................................................. 22 1 1 15.00 15 10 5 0 0 0 0
..................................................TGTGATGTGACGTAGTCGAAC............................................................................... 21 1 1 15.00 15 12 3 0 0 0 0
...................................................TTGATGTGACGTAGTGGAACA.............................................................................. 21 1 1 15.00 15 9 6 0 0 0 0
..................................................TGTGATGTGACGTAGTGGAATA.............................................................................. 22 1 1 15.00 15 9 5 1 0 0 0
..................................................TGTGATGTGATGTAGTGGAAC............................................................................... 21 1 1 15.00 15 7 7 1 0 0 0
..................................................TGTGATCTGACGTAGTGGAACA.............................................................................. 22 1 1 15.00 15 12 3 0 0 0 0
..................................................TGTGATGTGACGTAGGGGAA................................................................................ 20 1 1 15.00 15 14 1 0 0 0 0
...................................................GTGATGTGACGTAGTGGAACAG............................................................................. 22 1 1 14.00 14 14 0 0 0 0 0
...................................................TTGATGTGACGTAGTGGAAC............................................................................... 20 1 1 14.00 14 7 7 0 0 0 0
..................................................TGTGACGTGACGTAGTGGAA................................................................................ 20 1 1 14.00 14 11 3 0 0 0 0
...................................................GTGATGTGACGAAGTGGAAC............................................................................... 20 1 1 14.00 14 14 0 0 0 0 0
..................................................TGTGATGTGACGGAGTGGAAC............................................................................... 21 1 1 14.00 14 12 2 0 0 0 0
..................................................TGGGATGTGACGTAGTGGAA................................................................................ 20 1 1 14.00 14 10 3 1 0 0 0
..................................................TGTGATGTGATGTAGTGGAACA.............................................................................. 22 1 1 14.00 14 9 5 0 0 0 0
..................................................TGTGATGTGACGTAATGGAACA.............................................................................. 22 1 1 14.00 14 13 1 0 0 0 0
.................................................ATGTGATGTGACGTAGTGGAT................................................................................ 21 1 1 14.00 14 14 0 0 0 0 0
..................................................TGTGATGTGACGTAGTAGAAC............................................................................... 21 1 1 13.00 13 7 5 0 1 0 0
..................................................TGTGATGTGAGGTAGTGGAA................................................................................ 20 1 1 13.00 13 13 0 0 0 0 0
..................................................TGTGATGTGAAGTAGTGGAACA.............................................................................. 22 1 1 13.00 13 4 9 0 0 0 0
...................................................TTGATGTGACGTAGTGGAA................................................................................ 19 1 1 13.00 13 4 9 0 0 0 0
..................................................TGTGATGTGACGTAGTGAA................................................................................. 19 1 1 12.00 12 3 9 0 0 0 0
..................................................TGTGATGTGACGCAGTGGAA................................................................................ 20 1 1 12.00 12 10 2 0 0 0 0
..................................................TGTGATGTGACGTGGTGGAA................................................................................ 20 1 1 12.00 12 11 1 0 0 0 0
..................................................TGTTATGTGACGTAGTGGAAC............................................................................... 21 1 1 12.00 12 11 1 0 0 0 0
...................................................GTGATGTGACGAAGTGGAACA.............................................................................. 21 1 1 12.00 12 12 0 0 0 0 0
..................................................TGTGATGTGACGTACTGGAACA.............................................................................. 22 1 1 12.00 12 10 2 0 0 0 0
..................................................TGTGATGTGACGTAGTGGATT............................................................................... 21 2 1 12.00 12 10 2 0 0 0 0
...................................................GTGATGTGACGTAGTGGAACATT............................................................................ 23 0 1 12.00 12 12 0 0 0 0 0
..................................................TGTGATGCGACGTAGTGGAA................................................................................ 20 1 1 11.00 11 9 2 0 0 0 0
..................................................TGTGATGTGACGTAGTGTAACA.............................................................................. 22 1 1 11.00 11 7 4 0 0 0 0
..................................................TGTGATGTGAGGTAGTGGAAC............................................................................... 21 1 1 11.00 11 9 2 0 0 0 0
.................................................ATGTGATGTGACGTAGTGGAACT.............................................................................. 23 1 1 10.00 10 9 1 0 0 0 0
..................................................TGTGATGTGAGGTAGTGGAACA.............................................................................. 22 1 1 10.00 10 8 2 0 0 0 0
..................................................TGTGATGTGACGTAGTGAAA................................................................................ 20 1 1 10.00 10 9 1 0 0 0 0
..................................................TGTGATGTGACGTAGAGGAA................................................................................ 20 1 1 10.00 10 9 1 0 0 0 0
..................................................TGTGATGTGAAGTAGTGGAAC............................................................................... 21 1 1 10.00 10 7 1 1 1 0 0
..................................................TGTGATGTGACGTAGTGTAA................................................................................ 20 1 1 10.00 10 9 1 0 0 0 0
..................................................TGTGATGTTACGTAGTGGAACA.............................................................................. 22 1 1 10.00 10 4 6 0 0 0 0
..................................................TGTGATGTGACGTAATGGAAC............................................................................... 21 1 1 10.00 10 8 2 0 0 0 0
....................................................TGATGTGACGTAGTGGAACAT............................................................................. 21 0 1 10.00 10 10 0 0 0 0 0
..................................................TGTGACGTGACGTAGTGGAAC............................................................................... 21 1 1 10.00 10 9 1 0 0 0 0
..................................................TATGATGTGACGTAGTGGAACA.............................................................................. 22 1 1 10.00 10 8 2 0 0 0 0
..................................................AGTGATGTGACGTAGTGGAACA.............................................................................. 22 1 1 10.00 10 10 0 0 0 0 0
..................................................TGTGATGTGACGTAGTGGAACACT............................................................................ 24 1 1 10.00 10 8 2 0 0 0 0
..................................................TGTGATGTGACGTAGTAGAACA.............................................................................. 22 1 1 10.00 10 8 2 0 0 0 0
..................................................TGTGATGTGACGTAATGGAA................................................................................ 20 1 1 9.00 9 6 3 0 0 0 0
..................................................TGTTATGTGACGTAGTGGAACA.............................................................................. 22 1 1 9.00 9 5 4 0 0 0 0
..................................................TGTGATGTGACGTACTGGAA................................................................................ 20 1 1 9.00 9 6 3 0 0 0 0
..................................................TGTGATGTAACGTAGTGGAACA.............................................................................. 22 1 1 9.00 9 6 3 0 0 0 0
..................................................TGTGATGGGACGTAGTGGAAC............................................................................... 21 1 1 9.00 9 7 1 0 1 0 0
..................................................TGTGATGTGACGTAGTGGAACAGA............................................................................ 24 2 1 9.00 9 6 3 0 0 0 0
....................................................TGATGTGACGTAGTGGAACAA............................................................................. 21 1 1 9.00 9 7 2 0 0 0 0
..................................................TGTGATGTAACGTAGTGGAAC............................................................................... 21 1 1 9.00 9 5 4 0 0 0 0
..................................................TGTGATGTGACGTAGTGAAAC............................................................................... 21 1 1 9.00 9 7 2 0 0 0 0
..................................................TGTGATGTGACGTGGTGGAACA.............................................................................. 22 1 1 9.00 9 7 2 0 0 0 0
..................................................TGTAATGTGACGTAGTGGAAC............................................................................... 21 1 1 8.00 8 4 4 0 0 0 0
..................................................TGTGATGTGACGAAGTGGAA................................................................................ 20 1 1 8.00 8 7 1 0 0 0 0
..................................................TGTGATGTCACGTAGTGGAAC............................................................................... 21 1 1 8.00 8 3 5 0 0 0 0
..................................................TGTGATGTGACGAAGTGGAAC............................................................................... 21 1 1 8.00 8 6 2 0 0 0 0
..................................................TGTGATGTGACGTAGTGGAACTA............................................................................. 23 2 1 8.00 8 7 1 0 0 0 0
..................................................TGTGATGTGACGTAGTGGAACAAC............................................................................ 24 2 1 8.00 8 6 2 0 0 0 0
..................................................TGTTATGTGACGTAGTGGAA................................................................................ 20 1 1 7.00 7 6 1 0 0 0 0
..................................................TGTGATGTGACATAGTGGAACAA............................................................................. 23 2 1 7.00 7 7 0 0 0 0 0
..................................................TGTAATGTGACGTAGTGGAA................................................................................ 20 1 1 7.00 7 4 3 0 0 0 0
..................................................TGTGATGTGACGTAGTAGAA................................................................................ 20 1 1 7.00 7 5 1 0 1 0 0
...................................................GTGATGTGACGTAGTGGAT................................................................................ 19 1 1 7.00 7 7 0 0 0 0 0
..................................................AGTGATGTGACGTAGTGGAAC............................................................................... 21 1 1 7.00 7 6 1 0 0 0 0
..................................................TGTGATGTGATGTAGTGGAA................................................................................ 20 1 1 7.00 7 3 4 0 0 0 0
..................................................TTTGATGTGACGTAGTGGA................................................................................. 19 1 1 7.00 7 7 0 0 0 0 0
...................................................GTGATGTGACGAAGTGGAA................................................................................ 19 1 1 7.00 7 7 0 0 0 0 0
..................................................TGTGATGTTACGTAGTGGAAC............................................................................... 21 1 1 7.00 7 3 4 0 0 0 0
..................................................TGTGATGTGACGGAGTGGAA................................................................................ 20 1 1 7.00 7 6 0 0 1 0 0
..................................................GGTGATGTGACGTAGTGGAA................................................................................ 20 1 1 7.00 7 6 1 0 0 0 0
...................................................GTGATGTGACGGAGTGGAA................................................................................ 19 1 1 7.00 7 7 0 0 0 0 0
..................................................TGTGATGTGACGTAGTGGAATTT............................................................................. 23 2 1 7.00 7 4 3 0 0 0 0
..................................................TGTGATCTGACGTAGTGGAAC............................................................................... 21 1 1 7.00 7 4 3 0 0 0 0
...................................................GTGATGTGACGTAGTGGAACAAT............................................................................ 23 1 1 7.00 7 7 0 0 0 0 0
..................................................TGTGATGTGACGGAGTGGAACA.............................................................................. 22 1 1 7.00 7 7 0 0 0 0 0
..................................................TGTGATGTGACGTAGTGGAACTTT............................................................................ 24 1 1 7.00 7 4 3 0 0 0 0
...................................................GTGATGTGACGTAGTGGAACAAA............................................................................ 23 2 1 6.00 6 6 0 0 0 0 0
.................................................ATGTGATGTGAAGTAGTGGAA................................................................................ 21 1 1 6.00 6 6 0 0 0 0 0
..................................................TCTGATGTGACGTAGTGGAACAA............................................................................. 23 2 1 6.00 6 1 5 0 0 0 0
..................................................TATGATGTGACGTAGTGGAA................................................................................ 20 1 1 6.00 6 3 3 0 0 0 0
...................................................GCGATGTGACGTAGTGGAAC............................................................................... 20 1 1 6.00 6 6 0 0 0 0 0
..................................................TGTCATGTGACGTAGTGGAACA.............................................................................. 22 1 1 6.00 6 6 0 0 0 0 0
..................................................TGTAATGTGACGTAGTGGAACA.............................................................................. 22 1 1 6.00 6 1 5 0 0 0 0
..................................................TGTGATGTGAAGTAGTGGAA................................................................................ 20 1 1 6.00 6 5 1 0 0 0 0
..................................................TGTGATGGGACGTAGTGGAACA.............................................................................. 22 1 1 6.00 6 6 0 0 0 0 0
...................................................ATGATGTGACGTAGTGGAAC............................................................................... 20 1 1 6.00 6 6 0 0 0 0 0
..................................................TGTGATGTGACGTAGTGA.................................................................................. 18 1 1 6.00 6 6 0 0 0 0 0
..................................................TGTGATGTGACGTAGTGGAACGA............................................................................. 23 2 1 6.00 6 5 1 0 0 0 0
.................................................ATGTGATGTGACGTAGTGGAAAA.............................................................................. 23 1 1 6.00 6 3 3 0 0 0 0
...................................................GTGATATGACGTAGTGGAACA.............................................................................. 21 1 1 6.00 6 6 0 0 0 0 0
..................................................AGTGATGTGACGTAGTGGAA................................................................................ 20 1 1 6.00 6 6 0 0 0 0 0
..................................................TGTGATGTGACGTAGTGGAACAAG............................................................................ 24 2 1 6.00 6 4 2 0 0 0 0
..................................................TGTGATGTGACGTACTGGAAC............................................................................... 21 1 1 6.00 6 5 1 0 0 0 0
..................................................TGTGATGTGACGTAGTGCAACA.............................................................................. 22 1 1 6.00 6 6 0 0 0 0 0
..................................................TGTGATCTGACGTAGTGGAA................................................................................ 20 1 1 6.00 6 5 1 0 0 0 0
..................................................TGTGATGAGACGTAGTGGAACA.............................................................................. 22 1 1 6.00 6 6 0 0 0 0 0
.................................................CTGTGATGTGACGTAGTGGA................................................................................. 20 1 1 6.00 6 6 0 0 0 0 0
..................................................TGTGATGCGACGTAGTGGA................................................................................. 19 1 1 6.00 6 5 1 0 0 0 0
...................................................GTGATGTGACGCAGTGGAAC............................................................................... 20 1 1 6.00 6 6 0 0 0 0 0
..................................................TGTGATGTGACGTAGTGGAACAAAT........................................................................... 25 3 1 5.00 5 3 2 0 0 0 0
...................................................GTGGTGTGACGTAGTGGAACA.............................................................................. 21 1 1 5.00 5 5 0 0 0 0 0
..................................................TGTGATGTGACATAGTGGA................................................................................. 19 1 1 5.00 5 5 0 0 0 0 0
..................................................TGTGATGTGACGTAGTGGATTT.............................................................................. 22 3 1 5.00 5 3 2 0 0 0 0
..................................................TGTGATGTTACGTAGTGGAA................................................................................ 20 1 1 5.00 5 1 4 0 0 0 0
...................................................GTGATGTGACGTAGTGGAATT.............................................................................. 21 2 1 5.00 5 5 0 0 0 0 0
.................................................ATGTGATGTGACGTAGTGGAACAA............................................................................. 24 1 1 5.00 5 4 1 0 0 0 0
..................................................TGTGATGTGACGTAGTGGAAAT.............................................................................. 22 2 1 5.00 5 3 2 0 0 0 0
..................................................TGTGATGTGACGTAGTGGTA................................................................................ 20 1 1 5.00 5 3 2 0 0 0 0
..................................................TGTGATGGGACGTAGTGGAA................................................................................ 20 1 1 5.00 5 4 0 1 0 0 0
..................................................TGTGATGTGACGTAGTGGAACATA............................................................................ 24 1 1 5.00 5 5 0 0 0 0 0
..................................................TGTGATGAGACGTAGTGGAA................................................................................ 20 1 1 5.00 5 4 1 0 0 0 0
..................................................TGTGATGTGACGTAGTGGT................................................................................. 19 1 1 5.00 5 3 2 0 0 0 0
..................................................TGTGATGTGACGTAGTGGAACACA............................................................................ 24 2 1 5.00 5 5 0 0 0 0 0
..................................................TGTGATGTGACGTAGTGGAAAAA............................................................................. 23 2 1 5.00 5 3 2 0 0 0 0
..................................................TGTGATGTGACGAAGTGGAACA.............................................................................. 22 1 1 5.00 5 5 0 0 0 0 0
.................................................ATGTGATGTGAAGTAGTGGAAC............................................................................... 22 1 1 5.00 5 5 0 0 0 0 0
..................................................TGTGAGGTGACGTAGTGGAAC............................................................................... 21 1 1 4.00 4 3 0 1 0 0 0
...................................................GTGATGTGACGCAGTGGAA................................................................................ 19 1 1 4.00 4 4 0 0 0 0 0
...................................................GTGATGTGACATAGTGGAAC............................................................................... 20 1 1 4.00 4 4 0 0 0 0 0
..................................................TGCGATGTGACGTAGTGGAACAA............................................................................. 23 2 1 4.00 4 2 2 0 0 0 0
.................................................ATGTGATGTGACGTAGTG................................................................................... 18 0 1 4.00 4 3 1 0 0 0 0
..................................................TCTGATGTGACGTAGTGGA................................................................................. 19 1 1 4.00 4 4 0 0 0 0 0
...................................................GTGATGTGACGTAGTGGAAAA.............................................................................. 21 1 1 4.00 4 4 0 0 0 0 0
..................................................TGTGATGTGACCTAGTGGAACAA............................................................................. 23 2 1 4.00 4 4 0 0 0 0 0
...................................................GTGATGTGACGTAGTGGAACTT............................................................................. 22 1 1 4.00 4 4 0 0 0 0 0
..................................................TGTGATGTAACGTAGTGGAA................................................................................ 20 1 1 4.00 4 2 2 0 0 0 0
...................................................GGGATGTGACGTAGTGGAAC............................................................................... 20 1 1 4.00 4 4 0 0 0 0 0
...................................................GTGATGTGACGTAGCGGAAC............................................................................... 20 1 1 4.00 4 4 0 0 0 0 0
.................................................CTGTGATGTGACGTAGTGGAACAT............................................................................. 24 1 1 4.00 4 2 2 0 0 0 0
..................................................TGTGATGTGACATAGTGGAACAT............................................................................. 23 1 1 4.00 4 3 1 0 0 0 0
..................................................TGTCATGTGACGTAGTGGAAC............................................................................... 21 1 1 4.00 4 3 1 0 0 0 0
...................................................GTGATGTGACGTAGTTGAACA.............................................................................. 21 1 1 4.00 4 4 0 0 0 0 0
..................................................TGTGATGAGACGTAGTGGAAC............................................................................... 21 1 1 4.00 4 4 0 0 0 0 0
....................................................TGATGTGACGTAGTGGAACT.............................................................................. 20 1 1 4.00 4 4 0 0 0 0 0
.................................................ATGTGATGTGACGTAGTGGATT............................................................................... 22 2 1 4.00 4 2 2 0 0 0 0
...................................................GTGATGTGACGTATTGGAACA.............................................................................. 21 1 1 4.00 4 4 0 0 0 0 0
.................................................ATGTGATGTGACGTAGTGGAACAT............................................................................. 24 0 1 4.00 4 3 1 0 0 0 0
.................................................ATGTGATGTGAGGTAGTGGAA................................................................................ 21 1 1 4.00 4 4 0 0 0 0 0
...................................................GTGATGTGACGTAGGGGAACA.............................................................................. 21 1 1 4.00 4 4 0 0 0 0 0
...................................................GTGATGTGACTTAGTGGAAC............................................................................... 20 1 1 4.00 4 4 0 0 0 0 0
..................................................TGTGGTGTGACGTAGTGGA................................................................................. 19 1 1 4.00 4 2 2 0 0 0 0
..................................................TGTGATGTGACGTAGTGGAACATC............................................................................ 24 1 1 3.00 3 3 0 0 0 0 0
...................................................GTGATGTGACGTGGTGGAAC............................................................................... 20 1 1 3.00 3 3 0 0 0 0 0
.................................................ATGTGATGTGACGTAGTGGAACC.............................................................................. 23 1 1 3.00 3 2 1 0 0 0 0
.................................................CTGTGATGTGACGTAGTGGAACAA............................................................................. 24 2 1 3.00 3 2 1 0 0 0 0
...................................................GTGATGTGACGTAGTGGAGC............................................................................... 20 1 1 3.00 3 3 0 0 0 0 0
...................................................GTGATGTGACGTATTGGAA................................................................................ 19 1 1 3.00 3 3 0 0 0 0 0
...................................................GTGATGTGACGTAGGGGAAC............................................................................... 20 1 1 3.00 3 3 0 0 0 0 0
...................................................GTGATGTGACGTAGTTGAAC............................................................................... 20 1 1 3.00 3 3 0 0 0 0 0
.................................................ATGTGATGTGACGTAGTGGAAG............................................................................... 22 1 1 3.00 3 3 0 0 0 0 0
................................................CATGTGATGTGACGTAGTGGAACA.............................................................................. 24 0 1 3.00 3 3 0 0 0 0 0
...................................................GTGATGTGACGTAGTGAAAC............................................................................... 20 1 1 3.00 3 3 0 0 0 0 0
..................................................TGTGATGTGACGTAGTGGG................................................................................. 19 1 1 3.00 3 3 0 0 0 0 0
................................................GTTGTGATGTGACGTAGTGGAACA.............................................................................. 24 2 1 3.00 3 3 0 0 0 0 0
..................................................TGTGTTGTGACGTAGTGGAA................................................................................ 20 1 1 3.00 3 1 2 0 0 0 0
..................................................TGTGATGTGACGTAGTGGAACGT............................................................................. 23 1 1 3.00 3 3 0 0 0 0 0
..................................................TGTGATTTGACGTAGTGGAAA............................................................................... 21 2 1 3.00 3 3 0 0 0 0 0
.................................................ATGTGATGTGAGGTAGTGGAAC............................................................................... 22 1 1 3.00 3 3 0 0 0 0 0
..................................................TGTGATGTGACGTAGTGGCACA.............................................................................. 22 1 1 3.00 3 2 1 0 0 0 0
...................................................GTGATATGACGTAGTGGAAC............................................................................... 20 1 1 3.00 3 3 0 0 0 0 0
..................................................TGTGATGTGACGTAGTGGAAGA.............................................................................. 22 1 1 3.00 3 1 2 0 0 0 0
..................................................TGTGATGTGACGTAGTGGAACCTT............................................................................ 24 1 1 3.00 3 3 0 0 0 0 0
....................................................TGATGTGACGTAGTGGAAA............................................................................... 19 1 1 3.00 3 3 0 0 0 0 0
..................................................TGTGATGTGACGTAGTGGTACA.............................................................................. 22 1 1 3.00 3 2 1 0 0 0 0
..................................................TGTGATTTGACGTAGTGGAACAA............................................................................. 23 2 1 3.00 3 1 2 0 0 0 0
...................................................GTGATGTGACGCAGTGGAACA.............................................................................. 21 1 1 3.00 3 3 0 0 0 0 0
..................................................TGTGATGTGACGTTGTGGAACA.............................................................................. 22 1 1 3.00 3 2 1 0 0 0 0
..................................................TGTGATGTCACGTAGTGGAA................................................................................ 20 1 1 3.00 3 3 0 0 0 0 0
..................................................TGTGATGTGGCGTAGTGGAACAA............................................................................. 23 2 1 3.00 3 2 1 0 0 0 0

Anti-sense strand reads

TAAGGTAAAAGAGCAAAAGGAGACAGCAAAACGCAACTAAAGTATAAAGTACACTACACTGCATCACCTTGTAAGGACCGCAACGGGGTCGTTAGGCACTCTTTACCTCCTACTCTACTACAGCGTGTCGAGATAGTTTACAGTCCTCAT

***********************************...((((((.(((((((.((((((((((...(((....)))..))))))).......)))))))))).))))))......*********************************** 		Read size # Mismatch Hit Count Total Norm Total V056

head

 M046

female body

 V110

male body
..........................................................................................................CTCCTACTGTGCTACAGCGAG....................... 21 3 2 0.50 1 1 0 0
..................GGACACAGCCAAACGCCA.................................................................................................................. 18 3 20 0.40 8 0 8 0
..................................................................CCTCGTAAGGACTGGAACG................................................................. 19 3 7 0.14 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droMoj3 scaffold_6496:23382243-23382392 - dmo_167 candidate-rescued ATTCCATTTTC-----------------------------TCG-TTTTCCTCTGTCGTTTTGCG----TTG-A-TTTCATATTTCATGTGATGTGACGTAGTGGAACATTCCTGGCGTTGCC----CCAGCAATCCGTGAGAAATGGAGGATGAGATGATGTCGCACAGCTCTATCAAATGTCAGGAGTA
droVir3 scaffold_12875:1889359-1889462 + dvi-mir-989 Known_mirbase ATACAATTTTC-----TTTTG--TT---TTCCTG--GGCGCCG-CAACGTTTTG--------CGTTC-----A-TTTCATATTTCATGTGATGTGACGTAGTGGAACATTCCTGACGTTTGCAGCCACAGC-----------------------------------------------------------
droGri2 scaffold_15112:3992572-3992684 + CATCC-TCTCTTCGTTTACACATCTC--CTCTTGAGAGGATTG-CGTCGTTCCG--------CC----TTGAA-TTTCATATTTCATGTGATGTGACGTAGTGGAACATTCCTGACGTTTCCCACAACAA------------------------------------------------------------
droWil2 scf2_1100000004558:1541173-1541231 + ATGCCAT--------------------------------------------TTG--------CAT--TTA-ATATTTCATAGTTCATGTGATGTGACGTAGTGGAACATTCCTG----------------------------------------------------------------------------
dp5 3:2729282-2729360 - dps-mir-989 Known_mirbase GTTAA-----A----------------------------------------TTG--------TGTTTCTT---TTTGAATAGTTCATGTGATGTGACGTAGTGGAACATTCCTGGCGTTGTCAGCAACAGA-----------AATG--------------------------------------------
droPer2 scaffold_2:2918787-2918865 - GTTAA-----A----------------------------------------TTG--------TGTTTCTT---TTTGAATAGTTCATGTGATGTGACGTAGTGGAACATTCCTGGCGTTGTCAGCAACAGA-----------AATG--------------------------------------------
droAna3 scaffold_13266:5886633-5886724 + TC---------------------CATCC---TTG--GGATTAG-TGTTAATTTG--------TGTTTTTTTTATTTGAATAGTTCATGTGATGTGACGTAGTGGAACATTCCTGGCGTTCCTAACAA---------------------------------------------------------------
droBip1 scf7180000395839:44677-44771 + ATTAA-----ATAGT--------CCT-TAACCTAAAAGATTAG-TGTTATTTTG--------TGTTTTCT-GACTTGAATAGTTCATGTGATGTGACGTAGTGGAACATTCCTGGCGTT-----------------------------------------------------------------------
droKik1 scf7180000302385:160877-160979 - ATATCCATTTATAGAT-ATCCATTTC--CACC------TACAG-TTGGCTGATG--------TGTTTGAC-TTTTTGAATAGTTCATGTGATGTGACGTAGTGGAACATTCCTGAGGTGGCC--------------------------------------------------------------------
droFic1 scf7180000453948:394566-394640 + ATCCG----------------------------G--AGCTCAG-TGTCCTTTTG--------TGGTTTTA-GGTTCAAATAGTTCATGTGATGTGACGTAGTGGAACATGCCTGG---------------------------------------------------------------------------
droEle1 scf7180000486831:22086-22188 - ATTTA-----ATGGGTTATTTATCTCACATTCTG--AGTTCAG-TGTCGTTTTG--------TGTTTTT--AATTATAATAGTTCATGTGATGTGACGTAGTGGAACATACCTGGATTTGC---------------------------------------------------------------------
droRho1 scf7180000777200:348101-348204 - ATTTA-----ATGGGTGATTTATCCTACATACCG--AATTCAG-TGTCGTTTTG--------TGTTTTTT-AACTTGAATAGTTCATGTGATGTGACGTAGTGGAACATACCTGGAATCGC---------------------------------------------------------------------
droBia1 scf7180000301592:178263-178353 - CTATG------------------CCTCCACTCCG--ATTTAAG-TTTCGCTTGG--------TGTTTTTT-AATTTAACTATTTCATGTGATGTGACGTAGTGGAACATACCTGGGGTCGC---------------------------------------------------------------------
droTak1 scf7180000414188:5844-5921 - AATT---------------------T-------G---G--TTG-TTTTGCTTCG--------TGTTTTTT-AATTTGATTAATTCATGTGATGTGACGTAGTGGAACATACCTGGAGTTGC---------------------------------------------------------------------
droEug1 scf7180000409462:2807370-2807458 + AG---------------------CCTCCATCCTA--AGTTCAGTTTGCTTTTTG--------CGCTTTTT-AATTTGATTAGTTCATGTGATGTGACGTAGTGGAACATACCCAGAATTGC---------------------------------------------------------------------
dm3 chr2R:10032857-10032961 - dme-mir-989 Known_mirbase ATTTG-----GTAGTTGACAAATCCTCCATGCCG--AGATTAG-TTTCATTTTG--------CGTCTTTTGAATTCGAATAGTTCATGTGATGTGACGTAGTGGAACATACCTGAAATTAC---------------------------------------------------------------------
droSim2 2r:10739877-10739981 - dsi-mir-989 Known_mirbase ATTTG-----GTAGTTGACAAATCCTCCATGCCG--AGATAAG-TTTCATTTTG--------CGTCTTTTGAATTCGAATAGTTCATGTGATGTGACGTAGTGGAACATACCTGAAATTGC---------------------------------------------------------------------
droSec2 scaffold_1:7540595-7540683 - AT---------------------CCTCCTTGCCG--AGATTAG-TTTCATTTTG--------CGTCTTTTGAATTCGAATAGTTCATGTGATGTGACGTAGTGGAACATACCCGAAATTGC---------------------------------------------------------------------
droYak3 2R:9968927-9969030 - ATTTG-----GTGGTGGACCCATTCT-CATTCCG--AGATTAG-TTTTATTTTG--------CGTCTTTTGAATTCGAATAGTTCATGTGATGTGACGTAGTGGAACATACCTGGTGTTGC---------------------------------------------------------------------
droEre2 scaffold_4845:15805095-15805183 + AT---------------------CCTCCATTCCG--AGTTAAG-TTTCATTCTG--------CGTCTTTTGAATTCGAACAGTTCATGTGATGTGACGTAGTGGAACATACCTGGTGTTGC---------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
ATTCCATTTTC-----------------------------TCG-TTTTCCTCTGTCGTTTTGCG----TTG-A-TTTCATATTTCATGTGATGTGACGTAGTGGAACATTCCTGGCGTTGCC----CCAGCAATCCGTGAGAAATGGAGGATGAGATGATGTCGCACAGCTCTATCAAATGTCAGGAGTASizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
......................................................................................TGTGATGTGACGTAGTGGAAC...................................................................................21162850.0062850559295527266786
......................................................................................TGTGATGTGACGTAGTGGAACA..................................................................................22155159.00551594899610698275995
......................................................................................TGTGATGTGACGTAGTGGAA....................................................................................20137382.0037382329730696734270
......................................................................................TGTGATGTGACGTAGTGGA.....................................................................................1914882.004882436409201488
.......................................................................................GTGATGTGACGTAGTGGAAC...................................................................................2014677.004677467400003
.......................................................................................GTGATGTGACGTAGTGGAACA..................................................................................2114251.004251424700103
......................................................................................TGTGATGTGACGTAGTGGAACAA.................................................................................2313459.0034592428031101017
.......................................................................................GTGATGTGACGTAGTGGAA....................................................................................1912477.002477247600001
......................................................................................TGTGATGTGACGTAGTGGAACAT.................................................................................2311698.00169813600320333
......................................................................................TGTGATGTGACGTAGTGGAAA...................................................................................2111429.00142912130030213
.....................................................................................ATGTGATGTGACGTAGTGGAA....................................................................................2111105.0011059240530173
.....................................................................................ATGTGATGTGACGTAGTGGAAC...................................................................................221931.009317770150148
......................................................................................TGTGATGTGACGTAGTGGAACT..................................................................................221675.00675594011079
......................................................................................TGTGATGTGACGTAGTGGAAT...................................................................................211406.00406358002046
.......................................................................................GTGATGTGACGTAGTGGA.....................................................................................181302.0030230200000
......................................................................................TGTGATGTGACGTAGTGGAACAC.................................................................................231259.00259229010029
.......................................................................................GTGATGTGACGTAGTGGAACAA.................................................................................221217.0021721500002
.....................................................................................ATGTGATGTGACGTAGTGGA.....................................................................................201213.00213185000028
......................................................................................TGTGATGTGACGTAGTGG......................................................................................181189.0018918300006
........................................................................................TGATGTGACGTAGTGGAAC...................................................................................191185.0018518200003
......................................................................................TGTGATGTGACGTAGTGGAACAAA................................................................................241154.0015498001055
......................................................................................TGTGATGTGACGTAGTGGAACAG.................................................................................231154.00154127000027
........................................................................................TGATGTGACGTAGTGGAACA..................................................................................201154.0015415000004
.....................................................................................ATGTGATGTGACGTAGTGGAAT...................................................................................221138.00138103000035
......................................................................................TGTGATGTGACGTAGTGGAT....................................................................................201138.00138115000023
......................................................................................TGTGATGTGACGTAGTGGAACATT................................................................................241136.00136115011019
.......................................................................................GTGATGTGACGTAGTGGAAA...................................................................................201131.0013113100000
.......................................................................................GTGATGTGACGTAGTGGAACAT.................................................................................221118.0011811800000
........................................................................................TGATGTGACGTAGTGGAA....................................................................................181108.0010810300005
.....................................................................................ATGTGATGTGACGTAGTGGAAA...................................................................................22171.007158000013
.....................................................................................ATGTGATGTGACGTAGTGGAACA..................................................................................23162.00625600006
.......................................................................................GTGATGTGACGTAGTGGAACT..................................................................................21145.00454500000
......................................................................................TGTGATGTGACGTAGTGGAACG..................................................................................22142.00423900003
......................................................................................TGTGATGTGACGTAGTGGAAG...................................................................................21136.00363100005
......................................................................................TGTGATGTGACGTAGTGGAG....................................................................................20133.003320001012
......................................................................................TGTGATGTGACGTAGTGGAATT..................................................................................22132.00322800004
......................................................................................TGTGATGTGACGTAGTGGAACAAAA...............................................................................25131.003118000013
.....................................................................................ATGTGATGTGACGTAGTGG......................................................................................19131.00312900002
......................................................................................TGTGATGTGACGTAGTGGAACC..................................................................................22131.00312600203
.......................................................................................GTGATGTGACGTAGTGGAAT...................................................................................20130.00303000000
.........................................................................................GATGTGACGTAGTGGAACA..................................................................................19129.00292800001
.........................................................................................GATGTGACGTAGTGGAAC...................................................................................18128.00282800000
......................................................................................TGTGATGTGACGTAGTGGAC....................................................................................20124.00241900005
......................................................................................TGTGATGTGACGTAGTGGAACATTT...............................................................................25121.00211900002
..........................................................................................ATGTGACGTAGTGGAACA..................................................................................18121.00212100000
.......................................................................................GTGATGTGACGTAGTGGAACAC.................................................................................22119.00191900000
.......................................................................................GTGATGTGACGTAGTGGAACAG.................................................................................22114.00141400000
.....................................................................................ATGTGATGTGACGTAGTGGAT....................................................................................21114.00141400000
......................................................................................TGTGATGTGACGTAGTGGATT...................................................................................21112.00121000002
.......................................................................................GTGATGTGACGTAGTGGAACATT................................................................................23112.00121200000
.....................................................................................ATGTGATGTGACGTAGTGGAACT..................................................................................23110.0010900001
........................................................................................TGATGTGACGTAGTGGAACAT.................................................................................21110.00101000000
......................................................................................TGTGATGTGACGTAGTGGAACAGA................................................................................2419.009600003
........................................................................................TGATGTGACGTAGTGGAACAA.................................................................................2119.009700002
......................................................................................TGTGATGTGACGTAGTGGAACTA.................................................................................2318.008700001
......................................................................................TGTGATGTGACGTAGTGGAACAAC................................................................................2418.008600002
.......................................................................................GTGATGTGACGTAGTGGAT....................................................................................1917.007700000
.......................................................................................GTGATGTGACGTAGTGGAACAAA................................................................................2316.006600000
......................................................................................TGTGATGTGACGTAGTGA......................................................................................1816.006600000
......................................................................................TGTGATGTGACGTAGTGGAACGA.................................................................................2316.006500001
......................................................................................TGTGATGTGACGTAGTGGAACAAG................................................................................2416.006400002
......................................................................................TGTGATGTGACGTAGTGGAACAAAT...............................................................................2515.005300002
......................................................................................TGTGATGTGACGTAGTGGATTT..................................................................................2215.005300002
.......................................................................................GTGATGTGACGTAGTGGAATT..................................................................................2115.005500000
.....................................................................................ATGTGATGTGACGTAGTGGAACAA.................................................................................2415.005400001
......................................................................................TGTGATGTGACGTAGTGGAAAT..................................................................................2215.005300002
......................................................................................TGTGATGTGACGTAGTGGAACATA................................................................................2415.005500000
......................................................................................TGTGATGTGACGTAGTGGT.....................................................................................1915.005300002
......................................................................................TGTGATGTGACGTAGTGGAACACA................................................................................2415.005500000
.....................................................................................ATGTGATGTGACGTAGTG.......................................................................................1814.004300001
........................................................................................TGATGTGACGTAGTGGAACT..................................................................................2014.004400000
.....................................................................................ATGTGATGTGACGTAGTGGATT...................................................................................2214.004200002
.....................................................................................ATGTGATGTGACGTAGTGGAACAT.................................................................................2414.004300001
......................................................................................TGTGATGTGACGTAGTGGAACATC................................................................................2413.003300000
.....................................................................................ATGTGATGTGACGTAGTGGAACC..................................................................................2313.003200001
.....................................................................................ATGTGATGTGACGTAGTGGAAG...................................................................................2213.003300000
....................................................................................CATGTGATGTGACGTAGTGGAACA..................................................................................2413.003300000
......................................................................................TGTGATGTGACGTAGTGGG.....................................................................................1913.003300000
........................................................................................TGATGTGACGTAGTGGAAA...................................................................................1913.003300000
droVir3
ATACAATTTTC-----TTTTG--TT---TTCCTG--GGCGCCG-CAACGTTTTG--------CGTTC-----A-TTTCATATTTCATGTGATGTGACGTAGTGGAACATTCCTGACGTTTGCAGCCACAGC-----------------------------------------------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
......................................................................................TGTGATGTGACGTAGTGGAAC...................................................................................2111337298.0013372983144446101253442462123550191228352198721702142101130105263607044182541467915038575407543893443167218702055101329474122800000000000000000240020117301905209162458841102612676112716505158947025318916019752123
......................................................................................TGTGATGTGACGTAGTGGAACA..................................................................................2211075964.001075964252414711116814245799352128120619169115431501323021212454056121344402534110260868521042221493413101421112036668105300000000000000000176015130324165930815253251114481407011235805415220691411159413591579
......................................................................................TGTGATGTGACGTAGTGGAA....................................................................................201602882.0060288210132760491261535568671191145001146111696722615082161970214873122181420515374292369425437275243195642111031063100000000000000000220167308175531589722370577880444381741903322356430
......................................................................................TGTGATGTGACGTAGTGGA.....................................................................................19153330.005333030207405520195494216192283025776011000001265011209823212260348019256989254901432000118082000000000000000003017600204660118786815784490446561
......................................................................................TGTGATGTGACGTAGTGGAACAA.................................................................................23140221.0040221104710506311238903149352646740100001011390263441819172339002537991707000012819480000000000000000020251526506680014238241364251201518
......................................................................................TGTGATGTGACGTAGTGGAACAT.................................................................................23134905.00349051087503023781755789103526198000010000740330781079130520811454753603700001854310000000000000000060048382664490003494053122503941840052232
......................................................................................TGTGATGTGACGTAGTGGAAA...................................................................................21129154.0029154007160197375209191838712467290110001019800334599782216941019201341504220004722900000000000000000100218259890002740252450220301218
......................................................................................TGTGATGTGACGTAGTGGAACT..................................................................................22115828.0015828004090124723124729390225267200000000025001594397377560461352402300004162000000000000000000400050571471003512784612075621830636260
.....................................................................................ATGTGATGTGACGTAGTGGAA....................................................................................2118489.0084890013406272051614234511184300100000020009092843195304151222090010996000000000000000001001506710700034432722353201013
......................................................................................TGTGATGTGACGTAGTGGAACC..................................................................................2218191.0081912042019704615463409131638000000000380016713538463243410180000357100000000000000000000004071100045214711724200041
.....................................................................................ATGTGATGTGACGTAGTGGAAC...................................................................................2216973.00697320212059374596153841175000000100100065121131336134300010300001257000000000000000004001206496000149174999017481000710
.......................................................................................GTGATGTGACGTAGTGGAAC...................................................................................2014374.0043740037440622651126010900000000020087283031310000000000140000000000000000000000002900097356100000
.......................................................................................GTGATGTGACGTAGTGGAACA..................................................................................2114268.004268003737055264110129100000000010058202029360000000000162000000000000000000000002300052737300001
......................................................................................TGTGATGTGACGTAGTGGAAT...................................................................................2114118.00411800910339143691510225584400000000021005371061042131539601104000082300000000000000000000150235100089837400010
......................................................................................TGTGATGTGACGTAGTGGAACATT................................................................................2412886.002886008603741223532121145000000000300334182236362240211205000024210000000000000000000000060980002611322200021
......................................................................................TGTGATGTGACGTAGTGGAC....................................................................................2012741.0027410020430253680104124530000000002200116222131310430411200005411000000000000000000000420300000104200000
......................................................................................TGTGATGTGACGTAGTGGAACAAA................................................................................2412474.0024740054023971823304128600000000030131814211429919311010200001863000000000000000000000114451000311437600012
.....................................................................................ATGTGATGTGACGTAGTGGAAA...................................................................................2212033.0020330031017039936272455010000000300176778912079100102000032300000000000000000000003115000124883200012
......................................................................................TGTGATGTGACGTAGTGGAACG..................................................................................2211415.001415002401514179028812990000000003001531926282400010200009210000000000000000000001019200001520117131200002
......................................................................................TGTGATGTGACGTAGTGGAACAG.................................................................................2311402.0014020025020901990430760000000007003165875130101000005000062200000000000000000000000274600063223000014
.......................................................................................GTGATGTGACGTAGTGGAA....................................................................................1911272.00127200101502032207304500000000030040131299000000000041000000000000000000000300000000000000000
......................................................................................TGTGATGTGACGTAGTGGAACAC.................................................................................2311202.0012020064018731281119012200000000040022846327843000301000088000000000000000000000000161800027332100111
.....................................................................................ATGTGATGTGACGTAGTGGA.....................................................................................2011126.001126002701006783215319700000000030016636648950020102000018200000000000000000000010015000975914400000
......................................................................................TGTGATGTGACGTAGTGGAG....................................................................................2011031.0010310011083412732305293000000000300154161921601000100003310000000000000000000100001800000000100000
......................................................................................TGTGATGTGACGTAGTGGAT....................................................................................201885.008850027062138291483216000000000020012236353427381602000016300000000000000000000081018000561023200002
.....................................................................................ATGTGATGTGACGTAGTGGAAT...................................................................................221803.008030011064268320401470000000002001033322524300000200001110000000000000000000000031300013207600000
......................................................................................TGTGATGTGACGTAGTGG......................................................................................181749.007490014004014169844800000000030017036453124131102000011200000000000000000000010210000301110200128
......................................................................................TGTGATGTGACGTAGTGGAACATTT...............................................................................251740.007400034072135150037000000000100734549977811000200007010000000000000000000000114290004138510600011
........................................................................................TGATGTGACGTAGTGGAAC...................................................................................191729.00729102140590291138110100000000050075101314160010050000301000000000000000000000000100002722000001
........................................................................................TGATGTGACGTAGTGGAACA..................................................................................201634.006340016706233411060750000000004005315102090000010000390000000000000000000000000700017286400000
......................................................................................TGTGATGTGACGTAGTGGAATT..................................................................................221588.005880016055346015918800000000030068202837260000000000122000000000000000000000106800002104100001
.........................................................................................GATGTGACGTAGTGGAAC...................................................................................181514.00514003907155117809100000000030012456940001030000111000000000000000000000013100001000301010
......................................................................................TGTGATGTGACGTAGTGGAAG...................................................................................211474.0047400150452416130377000000000100051251216160000020000121000000000000000000000003000000230200000
.....................................................................................ATGTGATGTGACGTAGTGGAACA..................................................................................231431.0043100440440310550400000000001004013153525000000000060000000000000000000001007180008914591000010
......................................................................................TGTGATGTGACGTAGTGGC.....................................................................................191357.003570000632450100160000000004002060102000002000051000000000000000000000000000000000000000
......................................................................................TGTGATGTGACGTAGTGGAACAAAA...............................................................................251281.00281001602301004502200000000000019201936210000000000330000000000000000000000007401002001200000
........................................................................................TGATGTGACGTAGTGGAA....................................................................................181277.0027700530261170560560000000001002843990000000000120000000000000000000000100000000001000000
..........................................................................................ATGTGACGTAGTGGAACA..................................................................................181232.002320019036117046045000000000000245244000000000060000000000000000000000005200011343400000
.........................................................................................GATGTGACGTAGTGGAACA..................................................................................191230.002300048027216034030000000000000302484000000000080000000000000000000000000200042251100000
......................................................................................TGTGATGTGACGTAGTGGAACCA.................................................................................231229.00229001057044030300000000003006800200000030000171000000000000000000000000000000000000000
......................................................................................TGTGATGTGACGTAGTGGAAAT..................................................................................221217.002170080140150631430000000003003251092000000000051000000000000000000000000200001100100010
.......................................................................................GTGATGTGACGTAGTGGA.....................................................................................181193.00193001630402061000000000000090142000000000010000000000000000000000000000000000000000
......................................................................................TGTGATGTGACGTAGTGGCC....................................................................................201182.001820000100505030000000002001550000000000000020000000000000000000000000000000000000000
......................................................................................TGTGATGTGACGTAGTGGACA...................................................................................211160.00160000019214010031000000000300654113000000000040000000000000000000000001100010000000000
.....................................................................................ATGTGATGTGACGTAGTG.......................................................................................181130.00130003016121014014000000000000126596000000000080000000000000000000000000000015132300000
...........................................................................................TGTGACGTAGTGGAACAA.................................................................................181126.00126000050180280350000000000002400300000000000130000000000000000000000000000000000000000
......................................................................................TGTGATGTGACGTAGTGGAACATC................................................................................241120.0012000801121503015000000000100138245000000000040000000000000000000000121000023319700000
.......................................................................................GTGATGTGACGTAGTGGAACAT.................................................................................221113.0011300840200060200000000000012411000000000000000000000000000000000000000033103000000
......................................................................................TGTGATGTGACGTAGTGGAACATA................................................................................241111.0011100801506090900000000010018238130000000000110000000000000000000000011000004001001000
......................................................................................TGTGATGTGACGTAGTGGT.....................................................................................19185.0085003091721218000000000100223531000001000020000000000000000000000100300000000000000
.......................................................................................GTGATGTGACGTAGTGGAAA...................................................................................20180.008000690100030500000000000010010000000000000000000000000000000000000000000000000000
......................................................................................TGTGATGTGACGTAGTGGAACTA.................................................................................23178.00780020110808019000000000000172042000000000020000000000000000000000000000020100000000
......................................................................................TGTGATGTGACGTAGTGGAACAAG................................................................................24176.007600507090105000000000000182085000000000070000000000000000000000001300000103000010
......................................................................................TGTGATGTGACGTAGTGT......................................................................................18174.00740000207020113000000000000142044000000000000000000000000000000000000000033010000000
.....................................................................................ATGTGATGTGACGTAGTGGAACT..................................................................................23173.007300102010407000000000000311420000000000100000000000000000010000401100000102000000
......................................................................................TGTGATGTGACGTAGTGGG.....................................................................................19171.00710030141611219000000000000191011000000000020000000000000000000000000000000000000000
......................................................................................TGTGATGTGACGTAGTGGAACAAC................................................................................24169.006900409040507000000000100130484000000000030000000000000000000000004000020001000000
.......................................................................................GTGATGTGACGTAGTGGAACAA.................................................................................22165.006500450501030000000000000051112000000000010000000000000000000000000000000000000000
......................................................................................TGTGATGTGACGTAGTGGACT...................................................................................21162.0062000070805010000000000400250000001000000011000000000000000000000000000000000000000
.......................................................................................GTGATGTGACGTAGTGGAACATT................................................................................23161.00610080608040100000000000073374010000000030000000000000000000000001000010012100000
......................................................................................TGTGATGTGACGTAGTGGAACTG.................................................................................23161.00610000304023019000000000000110010000000000000000000000000000000000000000000000000000
......................................................................................TGTGATGTGACGTAGTGGATT...................................................................................21160.0060001080511159000000000000110042000100000010000000000000000000000000000001000000000
......................................................................................TGTGATGTGACGTAGTGGAGA...................................................................................21151.0051000061201811300000000000071110000000000000000000000000000000000000000000000000000
droGri2
CATCC-TCTCTTCGTTTACACATCTC--CTCTTGAGAGGATTG-CGTCGTTCCG--------CC----TTGAA-TTTCATATTTCATGTGATGTGACGTAGTGGAACATTCCTGACGTTTCCCACAACAA------------------------------------------------------------SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
......................................................................................TGTGATGTGACGTAGTGGAACA..................................................................................221186.0018615531
......................................................................................TGTGATGTGACGTAGTGGAAC...................................................................................211176.0017614432
......................................................................................TGTGATGTGACGTAGTGGAA....................................................................................201145.001458560
......................................................................................TGTGATGTGACGTAGTGGA.....................................................................................19123.0023149
.......................................................................................GTGATGTGACGTAGTGGAAC...................................................................................20116.0016160
......................................................................................TGTGATGTGACGTAGTGGAACAT.................................................................................23116.001679
.......................................................................................GTGATGTGACGTAGTGGAACA..................................................................................21112.0012120
......................................................................................TGTGATGTGACGTAGTGGAACT..................................................................................2219.00963
......................................................................................TGTGATGTGACGTAGTGGAAA...................................................................................2117.00743
.......................................................................................GTGATGTGACGTAGTGGAA....................................................................................1915.00550
......................................................................................TGTGATGTGACGTAGTGG......................................................................................1814.00440
.....................................................................................ATGTGATGTGACGTAGTGGAA....................................................................................2114.00440
........................................................................................TGATGTGACGTAGTGGAA....................................................................................1813.00321
......................................................................................TGTGATGTGACGTAGTGGAAT...................................................................................2112.00220
......................................................................................TGTGATGTGACGTAGTGGAACAA.................................................................................2312.00202
.....................................................................................ATGTGATGTGACGTAGTGGA.....................................................................................2012.00220
.....................................................................................ATGTGATGTGACGTAGTGGAAC...................................................................................2212.00220
......................................................................................TGTGATGTGACGTAGTGGAG....................................................................................2011.00110
........................................................................................TGATGTGACGTAGTGGAAC...................................................................................1911.00101
......................................................................................TGTGATGTGACGTAGTGGAACAGGG...............................................................................2511.00110
.....................................................................................ATGTGATGTGACGTAGTGGAACA..................................................................................2311.00110
......................................................................................TGTGATGTGACGTAGTGGAACGGA................................................................................2411.00110
......................................................................................TGTGATGTGACGTAGTGGAT....................................................................................2011.00101
........................................................................................TGATGTGACGTAGTGGAACA..................................................................................2011.00110
.........................................................................................GATGTGACGTAGTGGAACT..................................................................................1911.00110
......................................................................................TGTGATGTGACGTAGTGGAACC..................................................................................2211.00101
..........................................................................................ATGTGACGTAGTGGAACA..................................................................................1811.00110
.....................................................................................ATGTGATGTGACGTAGTG.......................................................................................1811.00110
droWil2
ATGCCAT--------------------------------------------TTG--------CAT--TTA-ATATTTCATAGTTCATGTGATGTGACGTAGTGGAACATTCCTG----------------------------------------------------------------------------SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
......................................................................................TGTGATGTGACGTAGTGGAACA..................................................................................22160665.006066549532895492381797
......................................................................................TGTGATGTGACGTAGTGGAAC...................................................................................21148384.00483842443572380819961
......................................................................................TGTGATGTGACGTAGTGGAA....................................................................................20122028.0022028519272247316262
.......................................................................................GTGATGTGACGTAGTGGAACA..................................................................................2114549.00454904546300
.......................................................................................GTGATGTGACGTAGTGGAAC...................................................................................2013678.00367803672501
......................................................................................TGTGATGTGACGTAGTGGA.....................................................................................1913321.00332103010289121
.......................................................................................GTGATGTGACGTAGTGGAA....................................................................................1911498.00149801495300
......................................................................................TGTGATGTGACGTAGTGGAACAT.................................................................................2311165.0011652105095117
.....................................................................................ATGTGATGTGACGTAGTGGAAC...................................................................................221735.00735362459049
......................................................................................TGTGATGTGACGTAGTGGAAA...................................................................................211708.00708061376019
.....................................................................................ATGTGATGTGACGTAGTGGAA....................................................................................211627.00627055352121
......................................................................................TGTGATGTGACGTAGTGGAACAA.................................................................................231539.005390403100135
......................................................................................TGTGATGTGACGTAGTGGAACT..................................................................................221396.00396134539011
........................................................................................TGATGTGACGTAGTGGAACA..................................................................................201354.003543343305
......................................................................................TGTGATGTGACGTAGTGG......................................................................................181272.002720269201
.......................................................................................GTGATGTGACGTAGTGGA.....................................................................................181232.002320232000
........................................................................................TGATGTGACGTAGTGGAAC...................................................................................191222.002221217301
......................................................................................TGTGATGTGACGTAGTGGAACC..................................................................................221215.0021541762708
......................................................................................TGTGATGTGACGTAGTGGAAT...................................................................................211192.00192015527010
.....................................................................................ATGTGATGTGACGTAGTGGAAT...................................................................................221145.001450129907
.....................................................................................ATGTGATGTGACGTAGTGGA.....................................................................................201139.0013911231023
........................................................................................TGATGTGACGTAGTGGAA....................................................................................181103.001030101200
.......................................................................................GTGATGTGACGTAGTGGAACAT.................................................................................22188.0088088000
.....................................................................................ATGTGATGTGACGTAGTGGAAA...................................................................................22175.0075059718
......................................................................................TGTGATGTGACGTAGTGGAACAC.................................................................................23167.0067064300
.........................................................................................GATGTGACGTAGTGGAACA..................................................................................19160.0060059100
.........................................................................................GATGTGACGTAGTGGAAC...................................................................................18160.0060158100
.......................................................................................GTGATGTGACGTAGTGGAAA...................................................................................20159.0059059000
.....................................................................................ATGTGATGTGACGTAGTGGAACA..................................................................................23156.0056050402
......................................................................................TGTGATGTGACGTAGTGGAACG..................................................................................22155.0055052300
.....................................................................................ATGTGATGTGACGTAGTGG......................................................................................19144.0044043100
......................................................................................TGTGATGTGACGTAGTGGAACATT................................................................................24140.0040038200
.......................................................................................GTGATGTGACGTAGTGGAACAA.................................................................................22138.0038038000
......................................................................................TGTGATGTGACGTAGTGGAACAG.................................................................................23137.0037035200
......................................................................................TGTGATGTGACGTAGTGGAACAAA................................................................................24133.0033030300
.......................................................................................GTGATGTGACGTAGTGGAACT..................................................................................21131.0031031000
..........................................................................................ATGTGACGTAGTGGAACA..................................................................................18125.0025025000
......................................................................................TGTGATGTGACGTAGTGGAT....................................................................................20125.0025017701
......................................................................................TGTGATGTGACGTAGTGGAACCC.................................................................................23123.0023019004
......................................................................................TGTGATGTGACGTAGTGGAAG...................................................................................21122.0022016501
......................................................................................TGTGATGTGACGTAGTGGAG....................................................................................20119.0019018100
.......................................................................................GTGATGTGACGTAGTGGAACC..................................................................................21117.0017017000
......................................................................................TGTGATGTGACGTAGTGGAATT..................................................................................22114.0014012200
.......................................................................................GTGATGTGACGTAGTGGAACAC.................................................................................22111.0011011000
.....................................................................................ATGTGATGTGACGTAGTG.......................................................................................1818.00808000
......................................................................................TGTGATGTGACGTAGTGGAACATTT...............................................................................2517.00706100
........................................................................................TGATGTGACGTAGTGGAACAT.................................................................................2117.00707000
......................................................................................TGTGATGTGACGTAGTGGAACAAAA...............................................................................2517.00705101
......................................................................................TGTGATGTGACGTAGTGGAC....................................................................................2016.00602301
........................................................................................TGATGTGACGTAGTGGAAA...................................................................................1916.00604002
.....................................................................................ATGTGATGTGACGTAGTGGAACC..................................................................................2316.00605100
.......................................................................................GTGATGTGACGTAGTGGAAT...................................................................................2016.00606000
......................................................................................TGTGATGTGACGTAGTGGAACCA.................................................................................2315.00505000
........................................................................................TGATGTGACGTAGTGGAACC..................................................................................2014.00404000
......................................................................................TGTGATGTGACGTAGTGGAACATA................................................................................2414.00403100
.....................................................................................ATGTGATGTGACGTAGTGGAAG...................................................................................2214.00402101
......................................................................................TGTGATGTGACGTAGTGGAACATC................................................................................2414.00404000
......................................................................................TGTGATGTGACGTAGTGGT.....................................................................................1914.00403100
.....................................................................................ATGTGATGTGACGTAGTGGAACT..................................................................................2314.00403100
......................................................................................TGTGATGTGACGTAGTGA......................................................................................1813.00303000
.......................................................................................GTGATGTGACGTAGTGGAACATT................................................................................2313.00303000
......................................................................................TGTGATGTGACGTAGTGGAAAT..................................................................................2213.00303000
......................................................................................TGTGATGTGACGTAGTGGG.....................................................................................1913.00303000
.....................................................................................ATGTGATGTGACGTAGTGGAATT..................................................................................2312.00200200
......................................................................................TGTGATGTGACGTAGTGGAGA...................................................................................2112.00202000
.........................................................................................GATGTGACGTAGTGGAACT..................................................................................1912.00202000
dp5
GTTAA-----A----------------------------------------TTG--------TGTTTCTT---TTTGAATAGTTCATGTGATGTGACGTAGTGGAACATTCCTGGCGTTGTCAGCAACAGA-----------AATG--------------------------------------------SizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
......................................................................................TGTGATGTGACGTAGTGGAACA..................................................................................221519835.005198357274892423681778680233704224634
......................................................................................TGTGATGTGACGTAGTGGAAC...................................................................................211349264.0034926482561191158291588462837546587
......................................................................................TGTGATGTGACGTAGTGGAA....................................................................................201164380.00164380097299049615192611296797
......................................................................................TGTGATGTGACGTAGTGGA.....................................................................................19141571.00415710197160009638209542531
.......................................................................................GTGATGTGACGTAGTGGAACA..................................................................................21124331.002433102391300101539840
.......................................................................................GTGATGTGACGTAGTGGAAC...................................................................................20121970.00219700218480100711310
......................................................................................TGTGATGTGACGTAGTGGAACT..................................................................................22110303.00103031418502221245947391
.......................................................................................GTGATGTGACGTAGTGGAA....................................................................................1917844.00784407749000049100
......................................................................................TGTGATGTGACGTAGTGGAAA...................................................................................2117356.0073560295200012174153330
......................................................................................TGTGATGTGACGTAGTGGAACAT.................................................................................2314249.004249030690001166100940
.....................................................................................ATGTGATGTGACGTAGTGGAA....................................................................................2112644.002644017181131131774150
......................................................................................TGTGATGTGACGTAGTGGAAT...................................................................................2112465.00246509900000721393100
......................................................................................TGTGATGTGACGTAGTGG......................................................................................1812283.0022830140500002861150
.....................................................................................ATGTGATGTGACGTAGTGGAAC...................................................................................2212097.0020970145300215557970
......................................................................................TGTGATGTGACGTAGTGGAACAA.................................................................................2312083.00208301149001417375510
.......................................................................................GTGATGTGACGTAGTGGA.....................................................................................1811540.00154001517000002300
......................................................................................TGTGATGTGACGTAGTGGAACC..................................................................................2211450.0014502863000145523160
........................................................................................TGATGTGACGTAGTGGAACA..................................................................................2011124.00112401100000022200
.....................................................................................ATGTGATGTGACGTAGTGGA.....................................................................................2011109.0011090564000025507130
........................................................................................TGATGTGACGTAGTGGAAC...................................................................................1911004.0010040982000051700
......................................................................................TGTGATGTGACGTAGTGGAACTC.................................................................................231656.00656010000065320
......................................................................................TGTGATGTGACGTAGTGGAT....................................................................................201646.00646037200002424460
.....................................................................................ATGTGATGTGACGTAGTGGAAA...................................................................................221537.00537030000001921440
.....................................................................................ATGTGATGTGACGTAGTGGAACA..................................................................................231459.0045903010000914900
......................................................................................TGTGATGTGACGTAGTGGT.....................................................................................191430.0043002230000819270
.......................................................................................GTGATGTGACGTAGTGGAACT..................................................................................211367.003670351000001600
........................................................................................TGATGTGACGTAGTGGAA....................................................................................181360.00360035300001600
......................................................................................TGTGATGTGACGTAGTGGAACAC.................................................................................231284.0028402530001111900
.......................................................................................GTGATGTGACGTAGTGGAACAT.................................................................................221275.00275027100001300
......................................................................................TGTGATGTGACGTAGTGGAACTCA................................................................................241273.00273000000027300
.......................................................................................GTGATGTGACGTAGTGGAAA...................................................................................201265.002650252000001300
......................................................................................TGTGATGTGACGTAGTGGAACATT................................................................................241240.0024001310000710200
......................................................................................TGTGATGTGACGTAGTGGAACG..................................................................................221225.002250153000027000
......................................................................................TGTGATGTGACGTAGTGGAATT..................................................................................221203.002030750000412220
.........................................................................................GATGTGACGTAGTGGAACA..................................................................................191202.00202019200001900
......................................................................................TGTGATGTGACGTAGTGGAACAAA................................................................................241173.001730660000109700
.........................................................................................GATGTGACGTAGTGGAAC...................................................................................181156.00156015200000400
......................................................................................TGTGATGTGACGTAGTGGAACTCG................................................................................241141.00141000000014100
.....................................................................................ATGTGATGTGACGTAGTGG......................................................................................191138.00138092000034120
.....................................................................................ATGTGATGTGACGTAGTGGAAT...................................................................................221120.00120068000034810
.......................................................................................GTGATGTGACGTAGTGGAAT...................................................................................201103.0010309500000800
......................................................................................TGTGATGTGACGTAGTGGAAG...................................................................................211103.00103046000035400
......................................................................................TGTGATGTGACGTAGTGGAG....................................................................................201101.00101079000081310
.......................................................................................GTGATGTGACGTAGTGGAACAA.................................................................................221100.0010009600000400
......................................................................................TGTGATGTGACGTAGTGGAACTG.................................................................................23197.009705000009200
......................................................................................TGTGATGTGACGTAGTGGAACCA.................................................................................23193.0093032000025810
......................................................................................TGTGATGTGACGTAGTGGTT....................................................................................20188.0088068000031520
......................................................................................TGTGATGTGACGTAGTGGAACTCC................................................................................24183.008300000008300
......................................................................................TGTGATGTGACGTAGTGGATT...................................................................................21178.0078050000012610
..........................................................................................ATGTGACGTAGTGGAACA..................................................................................18174.007406600000800
......................................................................................TGTGATGTGACGTAGTGGAACAG.................................................................................23173.007306400001800
......................................................................................TGTGATGTGACGTAGTG.......................................................................................17172.007200000007110
......................................................................................TGTGATGTGACGTAGTGGAAAT..................................................................................22170.0070022000024510
......................................................................................TGTGATGTGACGTAGTGGAACATTT...............................................................................25170.0070053000001700
.......................................................................................GTGATGTGACGTAGTGGAACC..................................................................................21161.006106100000000
......................................................................................TGTGATGTGACGTAGTGGAC....................................................................................20157.0057033000042000
......................................................................................TGTGATGTGACGTAGTGGAACTA.................................................................................23155.005503000005200
......................................................................................TGTGATGTGACGTAGTGGAACCC.................................................................................23140.004004000013500
......................................................................................TGTGATGTGACGTAGTGGAACATG................................................................................24136.003602000003400
......................................................................................TGTGATGTGACGTAGTGGAACAAAA...............................................................................25135.0035016000041500
......................................................................................TGTGATGTGACGTAGTGT......................................................................................18134.003402400000910
.....................................................................................ATGTGATGTGACGTAGTGGAACT..................................................................................23133.0033020000001120
.......................................................................................GTGATGTGACGTAGTGGAACAC.................................................................................22133.003303300000000
.......................................................................................GTGATGTGACGTAGTGGAT....................................................................................19130.003002900000100
......................................................................................TGTGATGTGACGTAGTGGAACATA................................................................................24125.002508000001700
......................................................................................TGTGATGTGACGTAGT........................................................................................16123.002300000002300
.....................................................................................ATGTGATGTGACGTAGTG.......................................................................................18122.002201400000800
...........................................................................................TGTGACGTAGTGGAAC...................................................................................16122.002200000002200
.....................................................................................ATGTGATGTGACGTAGTGGAACC..................................................................................23122.002201200001900
.....................................................................................ATGTGATGTGACGTAGTGGAT....................................................................................21121.002101500001500
........................................................................................TGATGTGACGTAGTGGAACT..................................................................................20120.002001700001200
......................................................................................TGTGATGTGACGTAGTGGAAGT..................................................................................22119.001905000001400
......................................................................................TGTGATGTGACGTAGTGGG.....................................................................................19118.001801300000500
.......................................................................................GTGATGTGACGTAGTGGT.....................................................................................18116.001601600000000
......................................................................................TGTGATGTGACGTAGTGGAACATC................................................................................24116.001602000001400
.......................................................................................GTGATGTGACGTAGTGGAACG..................................................................................21116.001601600000000
droPer2
GTTAA-----A----------------------------------------TTG--------TGTTTCTT---TTTGAATAGTTCATGTGATGTGACGTAGTGGAACATTCCTGGCGTTGTCAGCAACAGA-----------AATG--------------------------------------------SizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
......................................................................................TGTGATGTGACGTAGTGGAAC...................................................................................21122594.0022594019102219103461
......................................................................................TGTGATGTGACGTAGTGGAACA..................................................................................22120325.002032501741962982863
......................................................................................TGTGATGTGACGTAGTGGAA....................................................................................20110456.0010456088792431568
......................................................................................TGTGATGTGACGTAGTGGA.....................................................................................1911657.00165701540011115
.......................................................................................GTGATGTGACGTAGTGGAAC...................................................................................2011608.001608016030005
.......................................................................................GTGATGTGACGTAGTGGAACA..................................................................................2111489.001489014840005
.......................................................................................GTGATGTGACGTAGTGGAA....................................................................................191718.0071807140004
......................................................................................TGTGATGTGACGTAGTGGAACT..................................................................................221314.00314028600028
.....................................................................................ATGTGATGTGACGTAGTGGAA....................................................................................211265.00265022300240
......................................................................................TGTGATGTGACGTAGTGGAAA...................................................................................211261.00261021701043
......................................................................................TGTGATGTGACGTAGTGGAACAT.................................................................................231230.00230021200117
.....................................................................................ATGTGATGTGACGTAGTGGAAC...................................................................................221188.00188014802137
......................................................................................TGTGATGTGACGTAGTGGAACAA.................................................................................231145.0014509900046
......................................................................................TGTGATGTGACGTAGTGG......................................................................................181116.0011601150001
........................................................................................TGATGTGACGTAGTGGAAC...................................................................................191113.0011301130000
.......................................................................................GTGATGTGACGTAGTGGA.....................................................................................181102.0010201020000
........................................................................................TGATGTGACGTAGTGGAACA..................................................................................201101.001010930008
.....................................................................................ATGTGATGTGACGTAGTGGA.....................................................................................20177.00770690107
......................................................................................TGTGATGTGACGTAGTGGAAT...................................................................................21173.00730660007
......................................................................................TGTGATGTGACGTAGTGGAACC..................................................................................22165.00650580007
........................................................................................TGATGTGACGTAGTGGAA....................................................................................18162.00620620000
......................................................................................TGTGATGTGACGTAGTGGAACAC.................................................................................23146.00460410005
......................................................................................TGTGATGTGACGTAGTGGAACG..................................................................................22144.00440430001
.....................................................................................ATGTGATGTGACGTAGTGGAAA...................................................................................22137.003702700010
.......................................................................................GTGATGTGACGTAGTGGAACT..................................................................................21130.00300300000
.........................................................................................GATGTGACGTAGTGGAACA..................................................................................19121.00210190002
......................................................................................TGTGATGTGACGTAGTGGAT....................................................................................20121.00210180003
......................................................................................TGTGATGTGACGTAGTGGT.....................................................................................19119.00190190000
.....................................................................................ATGTGATGTGACGTAGTGGAACA..................................................................................23116.00160150001
.........................................................................................GATGTGACGTAGTGGAAC...................................................................................18116.00160160000
.......................................................................................GTGATGTGACGTAGTGGAACAT.................................................................................22115.00150150000
......................................................................................TGTGATGTGACGTAGTGGAACAAA................................................................................24112.0012070005
......................................................................................TGTGATGTGACGTAGTGGAATT..................................................................................22110.0010090001
.......................................................................................GTGATGTGACGTAGTGGAAA...................................................................................20110.00100100000
.....................................................................................ATGTGATGTGACGTAGTGGAAT...................................................................................2218.008080000
......................................................................................TGTGATGTGACGTAGTGGAG....................................................................................2018.008070001
.......................................................................................GTGATGTGACGTAGTGGAACAA.................................................................................2217.007070000
.......................................................................................GTGATGTGACGTAGTGGAAT...................................................................................2017.007070000
.....................................................................................ATGTGATGTGACGTAGTGG......................................................................................1916.006060000
.....................................................................................ATGTGATGTGACGTAGTGGAACT..................................................................................2316.006060000
......................................................................................TGTGATGTGACGTAGTGGTT....................................................................................2016.006060000
..........................................................................................ATGTGACGTAGTGGAACA..................................................................................1815.005050000
......................................................................................TGTGATGTGACGTAGTGGAAAT..................................................................................2215.005050000
.......................................................................................GTGATGTGACGTAGTGGAACAC.................................................................................2214.004040000
.......................................................................................GTGATGTGACGTAGTGGAACC..................................................................................2113.003030000
.......................................................................................GTGATGTGACGTAGTGGAACATT................................................................................2313.003030000
......................................................................................TGTGATGTGACGTAGTGGAAG...................................................................................2113.003020001
......................................................................................TGTGATGTGACGTAGTGGAACATT................................................................................2413.003020001
......................................................................................TGTGATGTGACGTAGTGGATT...................................................................................2113.003030000
.......................................................................................GTGATGTGACGTAGTGGT.....................................................................................1812.002020000
......................................................................................TGTGATGTGACGTAGTGT......................................................................................1812.002020000
......................................................................................TGTGATGTGACGTAGTGGAACAG.................................................................................2312.002020000
.....................................................................................ATGTGATGTGACGTAGTGGAAG...................................................................................2212.002020000
......................................................................................TGTGATGTGACGTAGTGGATTT..................................................................................2212.002020000
......................................................................................TGTGATGTGACGTAGTGGAACCA.................................................................................2312.002020000
.....................................................................................ATGTGATGTGACGTAGTGGAACC..................................................................................2312.002020000
.......................................................................................GTGATGTGACGTAGTGGAAG...................................................................................2012.002020000
........................................................................................TGATGTGACGTAGTGGAAA...................................................................................1912.002020000
......................................................................................TGTGATGTGACGTAGTGGAAAC..................................................................................2212.002020000
......................................................................................TGTGATGTGACGTAGTGGAACAAAA...............................................................................2512.002020000
.....................................................................................ATGTGATGTGACGTAGTGGAG....................................................................................2112.002020000
......................................................................................TGTGATGTGACGTAGTGGAC....................................................................................2012.002020000
......................................................................................TGTGATGTGACGTAGTGGAACAAG................................................................................2412.002020000
......................................................................................TGTGATGTGACGTAGTGGTTT...................................................................................2131.334020002
droAna3
TC---------------------CATCC---TTG--GGATTAG-TGTTAATTTG--------TGTTTTTTTTATTTGAATAGTTCATGTGATGTGACGTAGTGGAACATTCCTGGCGTTCCTAACAA---------------------------------------------------------------SizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
......................................................................................TGTGATGTGACGTAGTGGAAC...................................................................................21118295.00182951783812436585
......................................................................................TGTGATGTGACGTAGTGGAACA..................................................................................22117711.00177111721102342867
......................................................................................TGTGATGTGACGTAGTGGAA....................................................................................20114313.00143131380220743666
......................................................................................TGTGATGTGACGTAGTGGA.....................................................................................1913261.00326131661126724
.......................................................................................GTGATGTGACGTAGTGGAAC...................................................................................2011530.001530153000000
.......................................................................................GTGATGTGACGTAGTGGAACA..................................................................................2111427.001427142600010
.......................................................................................GTGATGTGACGTAGTGGAA....................................................................................1911087.001087108700000
......................................................................................TGTGATGTGACGTAGTGGAAA...................................................................................211471.00471439000248
......................................................................................TGTGATGTGACGTAGTGGAACT..................................................................................221379.0037936900091
......................................................................................TGTGATGTGACGTAGTGGAACAT.................................................................................231346.0034633700072
......................................................................................TGTGATGTGACGTAGTGGAACAC.................................................................................231342.00342320001192
......................................................................................TGTGATGTGACGTAGTGGAACAA.................................................................................231260.00260234000224
.......................................................................................GTGATGTGACGTAGTGGA.....................................................................................181223.0022322300000
......................................................................................TGTGATGTGACGTAGTGG......................................................................................181202.0020219900012
.....................................................................................ATGTGATGTGACGTAGTGGAA....................................................................................211144.0014413900041
.....................................................................................ATGTGATGTGACGTAGTGGAAC...................................................................................221139.0013913300042
........................................................................................TGATGTGACGTAGTGGAAC...................................................................................191103.0010310300000
........................................................................................TGATGTGACGTAGTGGAACA..................................................................................20196.00969500001
......................................................................................TGTGATGTGACGTAGTGGAAT...................................................................................21195.00958800043
........................................................................................TGATGTGACGTAGTGGAA....................................................................................18173.00737200010
......................................................................................TGTGATGTGACGTAGTGGAACG..................................................................................22163.00636300000
......................................................................................TGTGATGTGACGTAGTGGAT....................................................................................20154.00545300001
.....................................................................................ATGTGATGTGACGTAGTGGA.....................................................................................20139.00393800010
.......................................................................................GTGATGTGACGTAGTGGAAA...................................................................................20138.00383800000
.......................................................................................GTGATGTGACGTAGTGGAACAT.................................................................................22134.00343400000
.......................................................................................GTGATGTGACGTAGTGGAACT..................................................................................21124.00242400000
.......................................................................................GTGATGTGACGTAGTGGAACAC.................................................................................22124.00242400000
......................................................................................TGTGATGTGACGTAGTGGAACAAA................................................................................24120.00201700021
......................................................................................TGTGATGTGACGTAGTGGAAG...................................................................................21120.00201800020
......................................................................................TGTGATGTGACGTAGTGGAACC..................................................................................22120.00202000000
......................................................................................TGTGATGTGACGTAGTGGAACATT................................................................................24119.00191800010
.........................................................................................GATGTGACGTAGTGGAACA..................................................................................19117.00171700000
.......................................................................................GTGATGTGACGTAGTGGAACAA.................................................................................22117.00171700000
......................................................................................TGTGATGTGACGTAGTGGT.....................................................................................19115.00151500000
......................................................................................TGTGATGTGACGTAGTGGAG....................................................................................20115.00151500000
.....................................................................................ATGTGATGTGACGTAGTGGAACA..................................................................................23114.00141400000
.....................................................................................ATGTGATGTGACGTAGTGGAAA...................................................................................22112.00121100010
.........................................................................................GATGTGACGTAGTGGAAC...................................................................................18111.00111100000
.......................................................................................GTGATGTGACGTAGTGGAAT...................................................................................20111.00111100000
......................................................................................TGTGATGTGACGTAGTGGAACATTT...............................................................................25110.00101000000
......................................................................................TGTGATGTGACGTAGTGGAACAAC................................................................................2418.008600020
......................................................................................TGTGATGTGACGTAGTGGG.....................................................................................1918.008800000
......................................................................................TGTGATGTGACGTAGTGGAC....................................................................................2017.007600001
.......................................................................................GTGATGTGACGTAGTGGAT....................................................................................1916.006600000
..........................................................................................ATGTGACGTAGTGGAACA..................................................................................1815.005500000
.....................................................................................ATGTGATGTGACGTAGTGGAAT...................................................................................2215.005500000
......................................................................................TGTGATGTGACGTAGTGGAAAT..................................................................................2215.005300011
......................................................................................TGTGATGTGACGTAGTGGAACAG.................................................................................2315.005500000
......................................................................................TGTGATGTGACGTAGTGGAATT..................................................................................2224.509900000
......................................................................................TGTGATGTGACGTAGTGGATT...................................................................................2114.004400000
.......................................................................................GTGATGTGACGTAGTGGAACAG.................................................................................2214.004400000
......................................................................................TGTGATGTGACGTAGTGGAACGA.................................................................................2313.003300000
........................................................................................TGATGTGACGTAGTGGAACAA.................................................................................2113.003300000
......................................................................................TGTGATGTGACGTAGTGGAACTA.................................................................................2313.003300000
......................................................................................TGTGATGTGACGTAGTGGAAAC..................................................................................2213.003300000
........................................................................................TGATGTGACGTAGTGGAACT..................................................................................2013.003300000
.....................................................................................ATGTGATGTGACGTAGTGG......................................................................................1913.003300000
......................................................................................TGTGATGTGACGTAGTGGAACATC................................................................................2412.002200000
......................................................................................TGTGATGTGACGTAGTGGAACAACT...............................................................................2512.002200000
......................................................................................TGTGATGTGACGTAGTGGAACACA................................................................................2412.002200000
........................................................................................TGATGTGACGTAGTGGAAA...................................................................................1912.002200000
......................................................................................TGTGATGTGACGTAGTGGTT....................................................................................2012.002200000
......................................................................................TGTGATGTGACGTAGTGGAACTC.................................................................................2312.002000011
.....................................................................................ATGTGATGTGACGTAGTGGAAG...................................................................................2212.002200000
......................................................................................TGTGATGTGACGTAGTGA......................................................................................1812.002200000
.......................................................................................GTGATGTGACGTAGTGGAACCA.................................................................................2212.002200000
.......................................................................................GTGATGTGACGTAGTGGAACG..................................................................................2112.002200000
.......................................................................................GTGATGTGACGTAGTGGAAAT..................................................................................2112.002200000
.......................................................................................GTGATGTGACGTAGTGGAAG...................................................................................2012.002200000
........................................................................................TGATGTGACGTAGTGGAACAT.................................................................................2112.002200000
droBip1
ATTAA-----ATAGT--------CCT-TAACCTAAAAGATTAG-TGTTATTTTG--------TGTTTTCT-GACTTGAATAGTTCATGTGATGTGACGTAGTGGAACATTCCTGGCGTT-----------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
ATATCCATTTATAGAT-ATCCATTTC--CACC------TACAG-TTGGCTGATG--------TGTTTGAC-TTTTTGAATAGTTCATGTGATGTGACGTAGTGGAACATTCCTGAGGTGGCC--------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
ATCCG----------------------------G--AGCTCAG-TGTCCTTTTG--------TGGTTTTA-GGTTCAAATAGTTCATGTGATGTGACGTAGTGGAACATGCCTGG---------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
ATTTA-----ATGGGTTATTTATCTCACATTCTG--AGTTCAG-TGTCGTTTTG--------TGTTTTT--AATTATAATAGTTCATGTGATGTGACGTAGTGGAACATACCTGGATTTGC---------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
ATTTA-----ATGGGTGATTTATCCTACATACCG--AATTCAG-TGTCGTTTTG--------TGTTTTTT-AACTTGAATAGTTCATGTGATGTGACGTAGTGGAACATACCTGGAATCGC---------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
CTATG------------------CCTCCACTCCG--ATTTAAG-TTTCGCTTGG--------TGTTTTTT-AATTTAACTATTTCATGTGATGTGACGTAGTGGAACATACCTGGGGTCGC---------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
AATT---------------------T-------G---G--TTG-TTTTGCTTCG--------TGTTTTTT-AATTTGATTAATTCATGTGATGTGACGTAGTGGAACATACCTGGAGTTGC---------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
AG---------------------CCTCCATCCTA--AGTTCAGTTTGCTTTTTG--------CGCTTTTT-AATTTGATTAGTTCATGTGATGTGACGTAGTGGAACATACCCAGAATTGC---------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
ATTTG-----GTAGTTGACAAATCCTCCATGCCG--AGATTAG-TTTCATTTTG--------CGTCTTTTGAATTCGAATAGTTCATGTGATGTGACGTAGTGGAACATACCTGAAATTAC---------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
......................................................................................TGTGATGTGACGTAGTGGAAC...................................................................................21112900504.0012900504000019600000000000000184846934213822248000117000269524463429648325132526540621139448167256152497175693989317562287302325144414346421278502007422164040000000000000000066436525516243740000001651675511768903000200620141720151061012615800024105201103731341853188017671820192812107119582613272417754906433154521849786256413005030007223311645600000335262100101000131901000201934962342166957016270268818339045220942334874912811814236072121060148018494487729566692374116510025806111220446109106117581422971660764521724407915104417985685337187038104786300410150016311477864329266151252819715449851321017175325135923112847521330078582395900934113798089714637330232540839191161336541150174224880348522736223250615677220376547287994627031179993620895110139431001244263667332204210752121081063476632261419312330733351957874980548961659544218914664614635312
......................................................................................TGTGATGTGACGTAGTGGAACA..................................................................................22111109298.001110929800100800000000000000165346369240820331000011510031459561312605629666337836074106505368528127207619638440402008130250234883860942505106700002277691794000000000000000003173329427091978000000020000010764200109100051517821004801350010290720013301725325031513196311733522011115950322357228076259252526394634620324504372013264424190185063000026417260253103004150104000255890412713584401527557251754575929203975443737221813849679320941887112411248124868310308191978123477476932113190784106912619413396328016550916189499115151262334962272802431298651500101576127000191112011572893561611706951034795573711154531820620579516837995226023147217983555571394398237331819331881415165825380477837900661217189227376648580189854482015983713748761133119107193192179817529350229540424812328712512024610237611271041021644004479816361284274495192751759017514530632
......................................................................................TGTGATGTGACGTAGTGGAA....................................................................................2016829724.0068297240000077000000000000008889539684010125000000010160922503914450186441374432624771250541491220318239192669710192811403317129199899630000893240371000000000000000004391437036153054102012173321140141053911700230442178616105472038102200010103011102424411202573357396612550844316415811342219321894512905194812699912861133819312854200001217200221211020041100020107514521171189384531519369681979451125680627940149312218321786241163231086277331016117493857631306801088241222615366057956240507285251843795234968764928446227004115006009611341431789556113920134285816814613113752460217186107348546199740012230825633254583211628112228121835221133311281112732824621286710335827172912873929670774398816677461612464941188748672818237830142914148209915643138287712570103180133115490183223142743495824143130581544154
......................................................................................TGTGATGTGACGTAGTGGA.....................................................................................191680211.00680211000000000000000000001097503901032000000001053187712841124103317957125021039183568139961115061475207312357260005682700000000000000000543514491306000000116004102067510000020013751511510040005000000000001271102533160046203654709121292182416921451207547597107158796100010100005000000021010101022060014141436012729671060031828779288317233679261721055224714614010824776631902181165602347896854783689462406139518010011600210630112200117912197144141202120113236123186146113386893196183814829336789847364171062311222011415482800716419159884620915552435119049931384325640350353268711230105171351171415108608787139311200360063574999812123
......................................................................................TGTGATGTGACGTAGTGGAAA...................................................................................211550213.0055021300000500000000000000100237932700600000000083112437509556952289006753734112462110348921623302539386848700000000000000000000000451458401338000000010000000580000000000000150000000000000101000000041572419370522137844144110061333133613259127695695680100004000010000000000000001010150170592229414528122214454875872112110216745021142392113000100265812123678742908142528791936327635163511210620002025000004910101000034530335510000330117736141114068219773953213693899267841597111050212120411220664267111111709267611334326724346018871019799205823097711271693072674043201591016942126931997213146538563420615727
......................................................................................TGTGATGTGACGTAGTGGAACAA.................................................................................231514223.0051422300000100000000000000575347870002000000001235237490314411289282275203512491351016217310751395812153618405520000000000000000000000026524124618500000101000000051000000000020016000000070000020000001001037173101880714317107983078264215471902178319771898131790400100000000000000010000000213000147137911027852284076153154163523977281740211647391406739300421363711230669970841457303602348136361760403216010000124750002066300200100464003141001103006782160103594239471700100022537190171183924201137020010041347354679128943660211678305675322824432835643916347126412758332101014704727835139217154311963714973228357614412132
......................................................................................TGTGATGTGACGTAGTGGAACAT.................................................................................231371175.0037117500000000000000000000180134830020000000006231111567733132620632418718158642210515097327741181828389000165346100000000000000000183191174140000000000000000900000000000003000000050000010000002005984719973163215951516711314884989829912103264539700000011000000000000000000011000032669143128093332110168212581015422117967179112127362115710074554312343287872011387476931997596275454263659000010799070010032800100001214203200100011003780021011071692111036252103276161418103650000501002114883002991684847961117993049642201244027934169972015672514705130761912133489422172988969607831109332251035
......................................................................................TGTGATGTGACGTAGTGGAACATC................................................................................241192370.001923700000000000000000000000000000000000012032001001211021000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000121121033000000000000000000000000000000000000000000021000610000000007617404341260000103957882280000000000000000000000000000000000001302022400000000000000017193701200003510002000000000001020201000
......................................................................................TGTGATGTGACGTAGTGGAAT...................................................................................211151373.001513730000030000000000000092679000000000000018931811427224988948912055110529314255532669420513804000000000000000000000256297242213000000000000000420002000000110100000000000000000000130318181420032202149380231262272403197177931180000000000000000000000000000000093691035223632250551252392183024320681300025281479276154111905188867791290101110719191000172100000165000001201330160000001110168910210167940139605218748587863645800110501000009893329389710193307469891136374213590539126933961006411161126212476424701883346221132223236068321
.....................................................................................ATGTGATGTGACGTAGTGGAA....................................................................................211149306.00149306000001000000000000006360500010000000017632311914911196553391993810636912417187182273129000100000000000000000001081188214100000000001003013000000000000003400000000000000000000000545109103057981546220224734510519281224390950000000000000010000000000090000072411436230023342634341010171702536628110900014471226187150910054303840410423231494113269340001000000790000000152010020000001103370160102269174231367294713814937432320130010017387316653259571429493256814101112352227935331021882224342596372092413979743627640721044203
.....................................................................................ATGTGATGTGACGTAGTGGAAC...................................................................................221131780.0013178000000100000100000000553840020000000001122589895834538234178128028289953517314566000200000000000000000005561346800000001000000070000000000070026000000000000000000000001215551802101437315882268327285535745100342385000000000011000000000000000000005127718810543121288102236101111515904117402008496596957711444586088664720331413115653600001000000460000000039000040000200008100200018481320258414277217758431000030000510756722746319343761482112910002504323905542496536613431512543111136689125204900343227795019
......................................................................................TGTGATGTGACGTAGTGGAACC..................................................................................221119200.00119200000000000000000000001654257010100000000183594175383254926063173139181149478327261035158514921600000000000000000000000218115000000100000000241000000000000900000001100000002000000019162413310011123113918143326301012151862031230000001003000000000000000000000051557188141411412461751131591148884506100957485465729672036975058113646793200000670000012201010000650002300000000073000000462604223818452964577169200800111000020027691110180324976151864878114553320028693643352415147230002003102160712672730125429621975107
......................................................................................TGTGATGTGACGTAGTGGAACT..................................................................................221113137.0011313700000000000000000000593974000100000000189276170289183648143626519151519150277134247314143000000000000000000000001218189840000000010000002100000000001007000000000001000000010102612131436010002147360384280442226351217158100000000000000000000000000000000007210833330250200431122753115515021128561970000112318209112031862499130499114477331411100900002020000001090010000011401220000200100166000010683496949628954724349326263701003000020017883159294783502418645528852000146934833564111647741012091256244166824383911257712135316212059
.....................................................................................ATGTGATGTGACGTAGTGGAAA...................................................................................22141320.0041320000000000000000000002825300000000000048743230362613122715301183038308061170000000000000000000000035361632000000000000000120000000000000100000000000000000000000031100020105343657313114512522324294340000000000000000000000000000200025551370010701814100074760032000004812844629327869849618461203320127000001000003000000000160000100000000062001000491360548269127108135224000010000000322978224855235903081022002969060282203260121107002112039019443312155520571390000
......................................................................................TGTGATGTGACGTAGTGGAATT..................................................................................22136429.003642900000000000000000000917350000000000002544283382111472478224335592336352300000000000000000000000102106958300000000000001020000000000000200000001000000000000000111190000003876366656203135272100000000000000000000000000000000134459602060866110382872110000000411266231415481322281543391743702501000210000016001000001200100000000000600000006439922713351941295197145400022000010020202617174421109324560337110012698598180806171821110002801021829166439342731460100
......................................................................................TGTGATGTGACGTAGTGGAACAC.................................................................................23130483.0030483000000000000000000004117600100000000085142677078203824193551121671989815613652000000000000000000000001911840000000000000004000000000000030000000000000000000000010521191800000156168128951209797858458000000000000000000000000000000006100813193011011811711739710302530000036623930330494874102775381953801880000260204000002500000000280000100000000027000000146112010859311510277766000000000000077273114402778136524070235700006252217197911820000020080004925515224956240148107
.....................................................................................ATGTGATGTGACGTAGTGGAAT...................................................................................22127756.00277560000000000000000000052030000000000003452232942266734852371323410675624000000000000000000000004045324700000000000000050000000000000100000000000000000000000021100020001923632685688115419258200000000000000000000000000000000023855910009087942593945033100000315171321392789364957553328930619410000000000140020100070000000000000043001000213165623170109854301801110000000001130452168901596250601110015247071854052774130240022210264920189075522400275006
......................................................................................TGTGATGTGACGTAGTGGAC....................................................................................20124643.00246430000000000000000000029440000000000002248363122123610731661343251599418429195000000000000000000000002319000000000000000300000000000000000000000000000100000021302400000218154572747304425490000001001000000000000000000000003822400000042020007221101010006437491222528362322353133000024000001110000000900100000000000570000001801262744341865583114200000000000017654294120140352480702200008222430251164000150090001681011301183921394300
.....................................................................................ATGTGATGTGACGTAGTGGA.....................................................................................20122487.0022487000000000000000000009101000000000000163516151410542306840111815242315000000000000000000000002239222200000000000000025000000000010040000000000000000000100002005000000211822893938343100904516000000000000000000000000000000001434470000104210000161900143000001611634027414097801601296305165111000000000008000000001300300000000100139003100350262819121785321110010000001010121268377290863160675010110144321288101998301110001102119546984439716280502110
......................................................................................TGTGATGTGACGTAGTGGAAG...................................................................................21121257.00212570000010000000000000030210000000000000867154063121832303081374153027616568262600000000000000000000000414141400000000000000013000000000000060000000000000000000000001503110000001419222333242318198000000000000000000000000000010000340293410110581100023254052200001541025912271435379917293570000000000026000000004400110000000000650000004091180191588249142813454400000000000129516725181430167301229000031030646701223011000020102151842531757060641000
......................................................................................TGTGATGTGACGTAGTGGAT....................................................................................20119541.00195410000020000000000000098100000000000017141216196127938463191352437221100000000000000000000000128570000000000000002000000000000000000000000000000000000500102000074282628163415922201710000000000000000000000000000000001501292000015730001431106104000113874332169466243731265166100011000002000000000110050000000010037610000086595644428459822156010010000000142679115370142340015070000111358699501275203200020211243131290286401094816100
......................................................................................TGTGATGTGACGTAGTGG......................................................................................18119285.00192850000000000000000000032000000000000018102291811591510815651270006120000000000000000027252718000000010000000400000000000000000000000000000000018433265100000214000000131741319144000000000000000000000000000000000356383400010671983312358001413030002202031195989755342135731095766000010000005000000001000000000000011750000006444738242533971715500002000100037302712877559101100002835579970018500002005102364197201247170797537001
......................................................................................TGTGATGTGACGTAGTGGAACG..................................................................................22116214.001621400000000000000000000221440000000000003382236913188270232171082538331694167000000000000000000000006726000000000000000400000000000003000000010000000000000007128152700000012473956521436323215000000000000000000000000001000001711411101112011030152482648780142420002721632341314836101661287614915400000000100340000000021000000000000002600000015897857310968465235000000000000083748427108530583308460000322107497910480011010050102884876904776310219000
......................................................................................TGTGATGTGACGTAGTGGAACAAT................................................................................24115508.00155080000000000000000000061300000000000001231182438534929924461533192931200000000000000000000000023431715000000000000000800000000000002000000000000000000000000213000000017665538437135433918000000000000000000000000000000000171302040204011114473800630000027634111151263562232492181342351680000159129000001500000000800000000000000530000004821236167322174630700001000000020775161624418110501204000023274576900122400002007001176278434235126902752012
.......................................................................................GTGATGTGACGTAGTGGAAC...................................................................................20115128.0015128000000000000000000008121000000000000102419111331744170155542431473280007210000000000000000061138000000000000000300000000000000000000000000000000001009913202000000128886447723342421620000000000000000000000000000000000431544010308153042829011150000017796201621502516186142711918600000000000110000000040000101000000015001000461283778426133896322530000000000001829134719161650031210001991342128601326000010000002204396423854430105001
......................................................................................TGTGATGTGACGTAGTGGAAAT..................................................................................22114285.00142850000000000000000000056150000000000001916131834886020212279273436177000000000000000000000002426212800000000000000000000000000100000000000000000000000000230010000006242030161118156110000000000000000000000000000000022815230104154000002243004000000223115177413348111541104313670000021250000070000000030000000000000021100000422847352783553654300000000000001171652412964241022013020000895303857005070000010800018520937623817770180106
.......................................................................................GTGATGTGACGTAGTGGAACA..................................................................................21113157.0013157000000000000000000001452000000000000134016212481242201114082125383213000258600000000000000000545400000000000000000000000000000000000000000000000000010223122281800000028856644572169442018000000000000000000000000000000000331501210070651510228112333007800000157885162283452338322890280114000041000001200000000800000000000000500000023518963424156544262060000000000001610717492712359702520000196122010430229900002005000107348528360485071105
......................................................................................TGTGATGTGACGTAGTGGAACATT................................................................................24111946.0011946000001000000000000002310000000000001718159308103623615331820923225000000000000000000000002620151900000000000000010000000000000000000000000000000000000242620000002178534232611724129000000000000000000000000000000000150226010204391014293430120000014419211792224118213619384991440000464100000100000000100000000000000370010002415637209242126557800000000000069376522244491154010720001340305376012700000000501130586337821051200
......................................................................................TGTGATGTGACGTAGTGGAG....................................................................................20110994.00109940000020000000000000014710000000000005211010732240815226651353053000000000000000000000003325000000000000000100000000000100400000000000000000000002020150000003101033191411530000000000000000000000000000000121090120000004001002123542921200022016321339128173121291000010000000290000000027002000000000008500000016480811940315178032170100000000000215382004142184590680100018956169011474000020081002792052912586800279000
......................................................................................TGTGATGTGACGTAGTGGAAAC..................................................................................2218389.0083890000000000000000000084600000000000011683619142910512420015521033000000000000000000000001420000000000000000400000000000001000000000000000000000001132000000091912181621311530000000000000000000000000000000011301530013041100421080000000006124127427301743245314000037340000010000000010000000000000060000002520629174142251014800000000000010191048325182233008750000267111241008900000000000987711971199049000
.......................................................................................GTGATGTGACGTAGTGGAA....................................................................................1917897.007897000000000000000000001040000000000000107158116319831261141512155000754000000000000000006877000000000000000100000000001000000000000000000000001000005130000021237272231411817141000000000000000000000000000000000222028200100800100031131148700001278511169391752215035623600000000000900000000300100000000000230000002331486512876349018132000000000000507783186837102670000116574649013030000000100012688170112374097000
......................................................................................TGTGATGTGACGTAGTGGAACAG.................................................................................2317020.0070200000000000000000000052000000000000014261538309447150630122713341612000000000000000000000005543000000000000000100000000000000000000000000000000000005223400000017382728282521221413000000000000000000000000000000000201322000505320000111600010000014510014666921996273378642000000000009000000005000000000000009000000392222314129198261860000000000001431734573926149307222000161460373002070000210300011192133892210105000
......................................................................................TGTGATGTGACGTAGTGGAATC..................................................................................2214521.00452100000000000000000000100000000000000020121337000202459030000000000000000000000011520000000000000002000000000000000000000000000000000000000001000000320002021100000000000000000000000000000000000200000000000002000000000981994422554000015522156000000000000000000000000000001000000442222361134000000000000107706453300113000018914001800000000000639103504000
......................................................................................TGTGATGTGACGTAGTGGAAATC.................................................................................2314316.004316000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001003020000000020502248000000000000000000000000000000000000010002000000000000000000301020000000000000000000000000100000
......................................................................................TGTGATGTGACGTAGTGGT.....................................................................................1914304.00430400000000000000000000200000000000000090101114140313020619240000000000000000000000040210000000000000009000000000010000000000000000000000004600000000000721022229391200000000000000000000000000000000151400000012000000220010000018321637426113290000000000060000000060030000000000025200000011956452721120000200000005525639125101270000418432051011000031001911271660012341000
......................................................................................TGTGATGTGACGTAGTGGACA...................................................................................2114168.004168000000000000000000003832000000000000193861546804521865842333351030000000000000000000000001000000000000000000000000000000000000000000000000000000111230000000043133330100000000000000000000000000000000040200001010000144000000000433192212822500000000000040000000000000000000000090000002210955316528210000000000003314083240721073700005201710800000000000117131025026000
.....................................................................................ATGTGATGTGACGTAGTGGAACA..................................................................................2313913.003913000000000000000000003310000000000004760221840253325310001000000000000000000002010000000000000001000000000000000000000000000000000001040021000100022451020112616125000000000000000000000000000000000701900000061621321300000000022143186511806867338538100033000000000000001000000000010005000000252322161477415000000000000428371002194087000010967270001632000200000037172346169179125008
........................................................................................TGATGTGACGTAGTGGAAC...................................................................................1913885.0038850000000000000000000056000000000000061881014522281611912300000000000000000000000744200000000000000040000000000000000000000000000000000000002200000001144153016188535000000000000000000000000000000002371126000004000000201600020000067205342671034527202920000000000001000000001000000000000003000000247134112641290649000000000000413143011150150000538380014200001001000101226221167155042000
......................................................................................TGTGATGTGACGTAGTGGAACCA.................................................................................2313869.0038690000000000000000000040000000000000061231018221270183341733734750000000000000000000000010020000000000000000000000000000000000000000000000000000002012000000881059879360000000000000000000000000000000001110010202000002301000000043301191332021178168000010000002100000000300000000000000700000014169970121303490000000000007115791285521300748000055524500250000100000010195026157015000
........................................................................................TGATGTGACGTAGTGGAACA..................................................................................2013228.003228000000000000000000006900000000000006146632297189486915400010000000000000000000032100000000000000000000000000000000000000000000000001000114100000000174617271416612145000000000000000000000000001000000240118900010132127319250021000004937332551294733914693300000000000100000000000000000000000000000013983253415727340000000010009122352619022000043230001170000000100043144220154190021000
..........................................................................................ATGTGACGTAGTGGAACA..................................................................................1812786.0027860000000000000000000036000000000000023134031203230811930000000000000000000000011000000000000000000000000000000000000000000000000000100000005000000318991612200000000000000000000000000000000000020010000002029411760450107130000000005330137406441420000000000000000000000000000000000000000001209136315492210000000000005211037101903000014413200700000000000519172013000012
......................................................................................TGTGATGTGACGTAGTGGAAGT..................................................................................2212492.002492000000000000000000001020000000000001403100337007234692100000000000000000000000261030000000000000001000000000000000000000000000000000000000100000000314610111110000000000000000000000000000000015270000001703000270000000002093113513221232185212000001000000000000001001000000000003000000113719681895131000000000000002445329149182024400001694817300431000000001029365928228033000
......................................................................................TGTGATGTGACGTAGTGGAAAG..................................................................................2212236.002236000000000000000000003110000000000000712303503005128613300000000000000000000000053110000000000000003000000000000010000000000000000000000000000000000876590211200000000000000000000000000000000040904000039000005601000000032196222781681112151300000000000100000000100000000000000100000020812097121759600000000000005146017562114018000001266112100370000000100046535941133038000
.........................................................................................GATGTGACGTAGTGGAAC...................................................................................1812226.002226000000000000000000001470000000000000140113132011006011200000000000000000000000322500000000000000000000000000000000000000000000000000010000060000008303313298300200000000000000000000000000000000126032000004112212025000000000993597111157301100000000000200000000000000000000000300000015010591276981649000000000000100133851209000030453700300000000000111517131201001
......................................................................................TGTGATGTGACGTAGTGGATT...................................................................................2111947.0019470000000000000000000011000000000000002110011930042181251000000000000000000000004330000000000000000000000000000000000000000000000000000020000000000003263111200000000000000000000000000000000000104000000100000140000000001173151110575101010100000000002000000000001100000000004100000052482554152100000000000012218581739015800002924520012900010000001141022183600594010
.........................................................................................GATGTGACGTAGTGGAACA..................................................................................1911903.0019030000000000000000000087000000000000021116052101802237200010000000000000000000120100000000000000000000000000000000000000000000000000001000100000006292016226302500000000000000000000000000000000011011000100391642120410000200000952444350966453000001000000000000002000000000000002000000124875342653113600000000000030194421305000031393600700100000000381271701000
......................................................................................TGTGATGTGACGTAGTGGAACAAC................................................................................2411848.001848000000000000000000001100000000000005949311164021151561162000000000000000000000000110000000000000000000000000000001000000000000000000000000112000000031147556772000000000000000000000000000000000403000000131074440001000003721217527345243224214000017489000001000000000000000000000005000000349216026214000000000000300791166183012900001896760090000000010001921482033023000
........................................................................................TGATGTGACGTAGTGGAA....................................................................................1811796.0017960000000000000000000055000000000000086025113101443528200000000000000000000000043100000000000000010000000000000000000000000000000000000000010001009151457141541000000000000000000000000000000000300930000022000004900040000032303361142628144109000000000000000000000000000000000000000000975966351566221000000000000001422610015000011412001250000000000042315039116030000
......................................................................................TGTGATGTGACGTAGTGGC.....................................................................................1921709.0034180000000000000000000091200000000000019424402677414968243521130000000000000000000000010000000000000000001000000000000000000000000000000000106600001000000104111812553100000000000000000000000000000000001004000000500000000000000002471251014003460000000000010000000010001000000000036000000232278606145421000000000000201373094432530011880000184562001600000002000161071560091001
......................................................................................TGTGATGTGACGTAGTGGG.....................................................................................1911584.00158400000000000000000000110000000000000160204013841272218189430000000000000000000000002000000000000000003000000000010050000000000000000000013800000400000323111411120000000000000000000000000000000011102000000200000130030000003312230023112322000000000006000000004001000001000005400000031113950169101100000000000061219331734012800001443560032000000000001015162373055000
......................................................................................TGTGATGTGACGTAGTGGAGA...................................................................................2111537.0015370000000000000000000011000000000000003000102280002029726200000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000010200013000000000000000000000000000000000201000000401000342000000002010023100121210000000000010000000010000000000000030000001879185115914340000000000001032147195108100001223470040000000000002027382570032000
.....................................................................................ATGTGATGTGACGTAGTGG......................................................................................1911502.0015020000000000000000000000000000000000000010011100000011000000000000000000000000132300000000000000000000000000000000000000000000000000013000002000000150043020000000000000000000000000000000000124000000220000000000000001622423121350362221580000100000000000000000000000000000050000002718902448040000000000000080470270000004254640116100002012000151240181580129000
......................................................................................TGTGATGTGACGTAGTGGAACACT................................................................................2411424.001424000000000000000000000000000000000004513301124014211382100000000000000000000000101200000000000000000000000000000000000000000000000000000000000000003541423301000000000000000000000000000000000003000010016054400000000001011122313161418141118000000000001000000000000000000000002000000240030215627000000000000120652265613201810000523957024400000000000815191599016000
......................................................................................TGTGATGTGACGTAGTGGAACATA................................................................................2411422.00142200000000000000000000000000000000000101430151035441622000172700000000000000000110100000000000000000000000000000000000000000000000000000000000000003424666901000000000000000000000000000000000204200000210030300001000001816183412121526172317000047340000000000000000000000000000030000005211531973100000000000011069184311100136000027506200940000100000011147896014000
droSim2
ATTTG-----GTAGTTGACAAATCCTCCATGCCG--AGATAAG-TTTCATTTTG--------CGTCTTTTGAATTCGAATAGTTCATGTGATGTGACGTAGTGGAACATACCTGAAATTGC---------------------------------------------------------------------SizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
......................................................................................TGTGATGTGACGTAGTGGAAC...................................................................................2113333612.0033336122705565786717778081371004155934817222710487760000
......................................................................................TGTGATGTGACGTAGTGGAACA..................................................................................2212137382.0021373821100733557711088778841693127925319747994143000
......................................................................................TGTGATGTGACGTAGTGGAA....................................................................................2011799850.001799850000269016228839337212048332091289453608681124111
......................................................................................TGTGATGTGACGTAGTGGA.....................................................................................191167631.001676310003002320791767137773251230304192141001
......................................................................................TGTGATGTGACGTAGTGGAACAA.................................................................................23193545.009354500014800400393747153131570111172000
.....................................................................................ATGTGATGTGACGTAGTGGAA....................................................................................21144417.00444170102800209861622191405602970145000
......................................................................................TGTGATGTGACGTAGTGGAACAT.................................................................................23132004.00320040001321418121113462242371030000
......................................................................................TGTGATGTGACGTAGTGGAAA...................................................................................21128989.00289890103150020851754001954505182107000
.....................................................................................ATGTGATGTGACGTAGTGGAAC...................................................................................22123388.0023388001211011949971643149801905000
......................................................................................TGTGATGTGACGTAGTGGAACT..................................................................................22122627.002262701047001192194486111890140000
......................................................................................TGTGATGTGACGTAGTGGAAT...................................................................................21112184.0012184000300062224475721151028314000
......................................................................................TGTGATGTGACGTAGTGG......................................................................................1818911.0089110001498397135115113230672000
.....................................................................................ATGTGATGTGACGTAGTGGA.....................................................................................2015885.0058850002002882229200478021120000
............................................................................................GTGACGTAGTGGAACA..................................................................................1614656.004656000000784600203270000000
.........................................................................................GATGTGACGTAGTGGAAC...................................................................................1813721.0037210005009099003527000000
......................................................................................TGTGATGTGACGTAGTG.......................................................................................1713703.0037030000002922270031680151000
............................................................................................GTGACGTAGTGGAAC...................................................................................1513551.003551000000637502102411000000
...........................................................................................TGTGACGTAGTGGAACA..................................................................................1713328.00332800000010781145111103000000
......................................................................................TGTGATGTGACGTAGTGGAACG..................................................................................2213084.0030840007001317112600634000000
......................................................................................TGTGATGTGACGTAGT........................................................................................1612870.0028700000001711002840020000
......................................................................................TGTGATGTGACGTAGTGGAACC..................................................................................2212753.0027530003001462104440240000000
.........................................................................................GATGTGACGTAGTGGAA....................................................................................1712742.0027420000005659002626010000
.........................................................................................GATGTGACGTAGTGGAACA..................................................................................1912654.0026540007004747002553000000
......................................................................................TGTGATGTGACGTAGTGGAAG...................................................................................2112604.002604000250013119790017101162000
......................................................................................TGTGATGTGACGTAGTGGAATT..................................................................................2212461.002461000400135696330128070000
......................................................................................TGTGATGTGACGTAGTGGAACAC.................................................................................2312317.0023170001000119976022343010000
...........................................................................................TGTGACGTAGTGGAAC...................................................................................1612300.002300000000696597101006000000
.....................................................................................ATGTGATGTGACGTAGTGGAAT...................................................................................2212270.0022700002001148852301640974000
.....................................................................................ATGTGATGTGACGTAGTGGAAA...................................................................................2212175.00217500013008865001348064120000
......................................................................................TGTGATGTGACGTAGTGGAACAAT................................................................................2412082.002082000500110480520165010000
..........................................................................................ATGTGACGTAGTGGAAC...................................................................................1711511.0015110000005656001399000000
.......................................................................................GTGATGTGACGTAGTGGAAC...................................................................................2011402.0014020004170033729630342070000
..........................................................................................ATGTGACGTAGTGGAACA..................................................................................1811393.00139310000062107001223000000
.......................................................................................GTGATGTGACGTAGTGGAACA..................................................................................2111236.001236000630009610110408000000
...........................................................................................TGTGACGTAGTGGAA....................................................................................1511228.00122800000034129110595000000
........................................................................................TGATGTGACGTAGTGGAAC...................................................................................1911165.001165000220054948300111000000
..........................................................................................ATGTGACGTAGTGGAA....................................................................................1611113.0011130000002919001065000000
......................................................................................TGTGATGTGACGTAGTGGAT....................................................................................2011061.00106100040041533500155014012000
......................................................................................TGTGATGTGACGTAGTGGAACAG.................................................................................231858.0085800020039436000102000000
........................................................................................TGATGTGACGTAGTGGAACA..................................................................................201840.0084000031003953161096010000
......................................................................................TGTGATGTGACGTAGTGGAAAT..................................................................................221822.00822000300347252001560640000
.......................................................................................GTGATGTGACGTAGTGGAA....................................................................................191775.0077500017400151173002430340000
......................................................................................TGTGATGTGACGTAGTGGAG....................................................................................201652.006520001001069301441091000
........................................................................................TGATGTGACGTAGTGGAA....................................................................................181614.006140003002802371091020000
......................................................................................TGTGATGTGACGTAGTGGAACATT................................................................................241553.005530005003051802061000000
.............................................................................................TGACGTAGTGGAACA..................................................................................151517.0051700000020613920170000000
.....................................................................................ATGTGATGTGACGTAGTGGAACA..................................................................................231512.0051200060018514800173000000
......................................................................................TGTGATGTGACGTAG.........................................................................................151511.00511000000352400451010000
............................................................................................GTGACGTAGTGGAACAA.................................................................................171362.00362000000353700290000000
.....................................................................................ATGTGATGTGACGTAGTGG......................................................................................191340.003400001001401270060093000
.........................................................................................GATGTGACGTAGTGGA.....................................................................................161313.00313000000101100292000000
.........................................................................................GATGTGACGTAGTGGAAA...................................................................................181231.002310000001000230000000
......................................................................................TGTGATGTGACGTAGTGGAC....................................................................................201215.0021500000079840044080000
......................................................................................TGTGATGTGACGTAGTGGAAGT..................................................................................221203.00203000100837100220260000
.........................................................................................GATGTGACGTAGTGGAACAA.................................................................................201196.001960001001200192000000
......................................................................................TGTGATGTGACGTAGTGGAACAAG................................................................................241187.0018700000097730017000000
......................................................................................TGTGATGTGACGTAGTGGAAAG..................................................................................221173.00173000200272200900320000
......................................................................................TGTGATGTGACGTAGTGGAACAAC................................................................................241172.0017200000071790020020000
...........................................................................................TGTGACGTAGTGGAACAA.................................................................................181166.0016600000041450080000000
......................................................................................TGTGATGTGACGTAGTGGAAAC..................................................................................221160.0016000010052420063020000
......................................................................................TGTGATGTGACGTAGTGGAACTA.................................................................................231130.001300000005567008000000
.....................................................................................ATGTGATGTGACGTAGTG.......................................................................................181128.0012800002112900104000000
......................................................................................TGTGATGTGACGTAGTGGAACATTT...............................................................................251121.001210003006446008000000
..........................................................................................ATGTGACGTAGTGGAAA...................................................................................171113.001130000000200111000000
.......................................................................................GTGATGTGACGTAGTGGAACT..................................................................................211109.00109000200440099000000
..................................................................................TTCATGTGATGTGACGTAGTGGAAC...................................................................................251106.001060001007233000000000
..........................................................................................ATGTGACGTAGTGGA.....................................................................................151105.00105000000150099000000
......................................................................................TGTGATGTGACGTAGTGGAACATA................................................................................24199.009900011140390017000000
..........................................................................................ATGTGACGTAGTGGAACAA.................................................................................19197.0097000000230092000000
......................................................................................TGTGATGTGACGTAGTGGATT...................................................................................21190.00900000003043009062000
...........................................................................................TGTGACGTAGTGGAAA...................................................................................16287.50175000000352900111000000
droSec2
AT---------------------CCTCCTTGCCG--AGATTAG-TTTCATTTTG--------CGTCTTTTGAATTCGAATAGTTCATGTGATGTGACGTAGTGGAACATACCCGAAATTGC---------------------------------------------------------------------SizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
......................................................................................TGTGATGTGACGTAGTGGAAC...................................................................................21156231.0056231474463443215321
......................................................................................TGTGATGTGACGTAGTGGAACA..................................................................................22149662.0049662409083154585542
......................................................................................TGTGATGTGACGTAGTGGAA....................................................................................20123759.002375918949218072623
.......................................................................................GTGATGTGACGTAGTGGAAC...................................................................................2013992.0039923984314
.......................................................................................GTGATGTGACGTAGTGGAACA..................................................................................2113704.0037043692606
......................................................................................TGTGATGTGACGTAGTGGA.....................................................................................1912878.00287824051871285
......................................................................................TGTGATGTGACGTAGTGGAAA...................................................................................2111889.00188914291890271
.......................................................................................GTGATGTGACGTAGTGGAA....................................................................................1911435.0014351432102
.....................................................................................ATGTGATGTGACGTAGTGGAA....................................................................................2111257.0012578971912167
......................................................................................TGTGATGTGACGTAGTGGAACAA.................................................................................2311159.0011596921825280
.....................................................................................ATGTGATGTGACGTAGTGGAAC...................................................................................2211074.0010748431181112
......................................................................................TGTGATGTGACGTAGTGGAACAT.................................................................................231991.00991744822163
......................................................................................TGTGATGTGACGTAGTGGAACT..................................................................................221416.0041634329341
........................................................................................TGATGTGACGTAGTGGAAC...................................................................................191280.00280272206
........................................................................................TGATGTGACGTAGTGGAACA..................................................................................201266.00266257108
.....................................................................................ATGTGATGTGACGTAGTGGAAA...................................................................................221246.0024617137038
.....................................................................................ATGTGATGTGACGTAGTGGA.....................................................................................201232.0023218224026
......................................................................................TGTGATGTGACGTAGTGGAAT...................................................................................211221.0022116723130
......................................................................................TGTGATGTGACGTAGTGGAAG...................................................................................211219.00219216300
.......................................................................................GTGATGTGACGTAGTGGA.....................................................................................181184.00184184000
......................................................................................TGTGATGTGACGTAGTGGAACAC.................................................................................231124.001241008016
......................................................................................TGTGATGTGACGTAGTGG......................................................................................18199.009995004
.......................................................................................GTGATGTGACGTAGTGGAAA...................................................................................20195.009595000
........................................................................................TGATGTGACGTAGTGGAA....................................................................................18185.008579105
......................................................................................TGTGATGTGACGTAGTGGAACC..................................................................................22177.007763608
......................................................................................TGTGATGTGACGTAGTGGAT....................................................................................20166.006655407
.......................................................................................GTGATGTGACGTAGTGGAACAT.................................................................................22160.006060000
.....................................................................................ATGTGATGTGACGTAGTGGAAT...................................................................................22159.005944609
...................................................................................TCATGTGATGTGACGTAGTGGAAC...................................................................................24152.0052361006
.......................................................................................GTGATGTGACGTAGTGGAACAA.................................................................................22151.005151000
......................................................................................TGTGATGTGACGTAGTGGAACG..................................................................................22151.005135709
......................................................................................TGTGATGTGACGTAGTGGAACAAT................................................................................24142.0042266010
.....................................................................................ATGTGATGTGACGTAGTGGAACA..................................................................................23141.004135303
......................................................................................TGTGATGTGACGTAGTGGAATT..................................................................................22139.003935103
.........................................................................................GATGTGACGTAGTGGAACA..................................................................................19136.003635100
..................................................................................TTCATGTGATGTGACGTAGTGGAAC...................................................................................25126.002623012
.....................................................................................ATGTGATGTGACGTAGTGG......................................................................................19125.002523101
.........................................................................................GATGTGACGTAGTGGAAC...................................................................................18125.002525000
......................................................................................TGTGATGTGACGTAGTGGAG....................................................................................20122.002212406
......................................................................................TGTGATGTGACGTAGTGGAACATT................................................................................24121.002118201
.......................................................................................GTGATGTGACGTAGTGGAACT..................................................................................21121.002121000
......................................................................................TGTGATGTGACGTAGTGGAAAT..................................................................................22121.002116104
.......................................................................................GTGATGTGACGTAGTGGAACG..................................................................................21118.001818000
......................................................................................TGTGATGTGACGTAGTGGAACAG.................................................................................23118.001816101
..................................................................................TTCATGTGATGTGACGTAGTGGAA....................................................................................24116.001613003
..................................................................................TTCATGTGATGTGACGTAGTGG......................................................................................22115.001514001
..........................................................................................ATGTGACGTAGTGGAACA..................................................................................18112.001212000
......................................................................................TGTGATGTGACGTAGTGGAAAG..................................................................................22112.001212000
.......................................................................................GTGATGTGACGTAGTGGAAT...................................................................................20112.001212000
......................................................................................TGTGATGTGACGTAGTGGAC....................................................................................20111.001110001
..................................................................................TTCATGTGATGTGACGTAGTGGA.....................................................................................23111.001110001
......................................................................................TGTGATGTGACGTAGTGGT.....................................................................................19111.00117301
......................................................................................TGTGATGTGACGTAGTGGAAAC..................................................................................22110.00109100
......................................................................................TGTGATGTGACGTAGTGGAACATTT...............................................................................2519.0097200
....................................................................................CATGTGATGTGACGTAGTGGAAC...................................................................................2319.0098001
......................................................................................TGTGATGTGACGTAGTGGAACAAC................................................................................2419.0097101
........................................................................................TGATGTGACGTAGTGGAAA...................................................................................1918.0088000
.......................................................................................GTGATGTGACGTAGTGGAACAC.................................................................................2217.0077000
.....................................................................................ATGTGATGTGACGTAGTGGAT....................................................................................2117.0076100
.....................................................................................ATGTGATGTGACGTAGTG.......................................................................................1816.0064002
droYak3
ATTTG-----GTGGTGGACCCATTCT-CATTCCG--AGATTAG-TTTTATTTTG--------CGTCTTTTGAATTCGAATAGTTCATGTGATGTGACGTAGTGGAACATACCTGGTGTTGC---------------------------------------------------------------------SizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
......................................................................................TGTGATGTGACGTAGTGGAAC...................................................................................21161833.0061833253033423197187123000632
......................................................................................TGTGATGTGACGTAGTGGAACA..................................................................................22157250.00572502489761111309743715501042
......................................................................................TGTGATGTGACGTAGTGGAA....................................................................................20122906.0022906017521021694104672000132
.......................................................................................GTGATGTGACGTAGTGGAAC...................................................................................2014274.00427404259001150008
.......................................................................................GTGATGTGACGTAGTGGAACA..................................................................................2114132.00413204126000150000
......................................................................................TGTGATGTGACGTAGTGGA.....................................................................................1913923.0039230313700245967900024
......................................................................................TGTGATGTGACGTAGTGGAAA...................................................................................2111804.001804013920018343580002
......................................................................................TGTGATGTGACGTAGTGGAACAT.................................................................................2311772.001772014200113352990004
.......................................................................................GTGATGTGACGTAGTGGAA....................................................................................1911270.00127001268000020000
......................................................................................TGTGATGTGACGTAGTGGAACAA.................................................................................231868.0086804380110333840002
......................................................................................TGTGATGTGACGTAGTGGAACT..................................................................................221692.0069206021068750000
......................................................................................TGTGATGTGACGTAGTGGAAT...................................................................................211376.00376028100277500011
......................................................................................TGTGATGTGACGTAGTGGAACAC.................................................................................231233.0023301840016420000
........................................................................................TGATGTGACGTAGTGGAACA..................................................................................201222.002220214000080000
.......................................................................................GTGATGTGACGTAGTGGA.....................................................................................181218.002180218000000000
.....................................................................................ATGTGATGTGACGTAGTGGAA....................................................................................211212.0021201530063500000
......................................................................................TGTGATGTGACGTAGTGG......................................................................................181205.002050198000070000
........................................................................................TGATGTGACGTAGTGGAAC...................................................................................191180.001800177000030000
......................................................................................TGTGATGTGACGTAGTGGAACG..................................................................................221177.001770169000530000
.....................................................................................ATGTGATGTGACGTAGTGGAAC...................................................................................221151.0015101310111160001
......................................................................................TGTGATGTGACGTAGTGGAATT..................................................................................221128.0012801030013210000
.......................................................................................GTGATGTGACGTAGTGGAAA...................................................................................201116.001160116000000000
.......................................................................................GTGATGTGACGTAGTGGAACAT.................................................................................22198.0098097000010000
.....................................................................................ATGTGATGTGACGTAGTGGAAT...................................................................................22184.008405200121000019
......................................................................................TGTGATGTGACGTAGTGGAACC..................................................................................22182.008204800217150000
......................................................................................TGTGATGTGACGTAGTGGAT....................................................................................20172.00720500000220000
.....................................................................................ATGTGATGTGACGTAGTGGAAA...................................................................................22172.00720530013150000
......................................................................................TGTGATGTGACGTAGTGGAACATT................................................................................24166.00660510122100000
........................................................................................TGATGTGACGTAGTGGAA....................................................................................18161.0061061000000000
.......................................................................................GTGATGTGACGTAGTGGAACT..................................................................................21157.0057057000000000
.....................................................................................ATGTGATGTGACGTAGTGGA.....................................................................................20157.0057049001160000
.......................................................................................GTGATGTGACGTAGTGGAACAA.................................................................................22152.0052052000000000
.....................................................................................ATGTGATGTGACGTAGTGGAACA..................................................................................23137.0037034000030000
......................................................................................TGTGATGTGACGTAGTGGAAAT..................................................................................22132.00320200000120000
......................................................................................TGTGATGTGACGTAGTGGAAG...................................................................................21131.0031028000210000
.........................................................................................GATGTGACGTAGTGGAACA..................................................................................19131.0031029000110000
.........................................................................................GATGTGACGTAGTGGAAC...................................................................................18129.0029029000000000
......................................................................................TGTGATGTGACGTAGTGGAACAG.................................................................................23128.0028021000160000
......................................................................................TGTGATGTGACGTAGTGGAACAAT................................................................................24126.0026022000040000
.......................................................................................GTGATGTGACGTAGTGGAAT...................................................................................20126.0026026000000000
......................................................................................TGTGATGTGACGTAGTGGAC....................................................................................20121.002109002340003
......................................................................................TGTGATGTGACGTAGTGGAG....................................................................................20120.0020013000150001
......................................................................................TGTGATGTGACGTAGTGGAACACT................................................................................24118.0018013000140000
..........................................................................................ATGTGACGTAGTGGAACA..................................................................................18116.0016016000000000
.......................................................................................GTGATGTGACGTAGTGGAACAC.................................................................................22114.0014014000000000
......................................................................................TGTGATGTGACGTAGTGGAAAG..................................................................................22111.0011011000000000
........................................................................................TGATGTGACGTAGTGGAACAT.................................................................................2119.00908000010000
......................................................................................TGTGATGTGACGTAGTGGT.....................................................................................1919.00906000030000
......................................................................................TGTGATGTGACGTAGTGGATT...................................................................................2118.00808000000000
.....................................................................................ATGTGATGTGACGTAGTGG......................................................................................1918.00805000030000
......................................................................................TGTGATGTGACGTAGTGGAAAC..................................................................................2218.00806000110000
......................................................................................TGTGATGTGACGTAGTGGAAGT..................................................................................2217.00706000010000
.......................................................................................GTGATGTGACGTAGTGGAATT..................................................................................2117.00707000000000
......................................................................................TGTGATGTGACGTAGTGGAACAGT................................................................................2416.00605000010000
......................................................................................TGTGATGTGACGTAGTGGAACAAC................................................................................2415.00504000010000
......................................................................................TGTGATGTGACGTAGTGGATTT..................................................................................2214.00402001010000
......................................................................................TGTGATGTGACGTAGTGGAACATTT...............................................................................2514.00404000000000
........................................................................................TGATGTGACGTAGTGGAAA...................................................................................1914.00404000000000
..............................................................................ATAGTTCATGTGATGTGACGTAGTGGAAC...................................................................................2914.00400000000004
......................................................................................TGTGATGTGACGTAGTGGC.....................................................................................1914.00401000010002
droEre2
AT---------------------CCTCCATTCCG--AGTTAAG-TTTCATTCTG--------CGTCTTTTGAATTCGAACAGTTCATGTGATGTGACGTAGTGGAACATACCTGGTGTTGC---------------------------------------------------------------------SizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
......................................................................................TGTGATGTGACGTAGTGGAAC...................................................................................21173624.0073624663050107694833321
......................................................................................TGTGATGTGACGTAGTGGAACA..................................................................................22167190.006719059490015136534451687
......................................................................................TGTGATGTGACGTAGTGGAA....................................................................................20128290.002829024937090308819858
.......................................................................................GTGATGTGACGTAGTGGAAC...................................................................................2015387.0053875385000200
.......................................................................................GTGATGTGACGTAGTGGAACA..................................................................................2115173.0051735168000203
......................................................................................TGTGATGTGACGTAGTGGA.....................................................................................1914582.0045824171000398121
.......................................................................................GTGATGTGACGTAGTGGAA....................................................................................1911619.0016191619000000
......................................................................................TGTGATGTGACGTAGTGGAAA...................................................................................2111571.001571135301220690
......................................................................................TGTGATGTGACGTAGTGGAACAT.................................................................................2311317.00131782800015612321
......................................................................................TGTGATGTGACGTAGTGGAACAA.................................................................................231923.0092351600024927131
......................................................................................TGTGATGTGACGTAGTGGAACT..................................................................................221809.0080969300067742
........................................................................................TGATGTGACGTAGTGGAAC...................................................................................191362.00362360000200
.....................................................................................ATGTGATGTGACGTAGTGGAA....................................................................................211341.003412640007160
........................................................................................TGATGTGACGTAGTGGAACA..................................................................................201333.00333331000200
......................................................................................TGTGATGTGACGTAGTGGAAG...................................................................................211330.00330328000011
......................................................................................TGTGATGTGACGTAGTGGAAT...................................................................................211286.002862530003210
.....................................................................................ATGTGATGTGACGTAGTGGAAC...................................................................................221286.002862500002970
.......................................................................................GTGATGTGACGTAGTGGA.....................................................................................181277.00277277000000
......................................................................................TGTGATGTGACGTAGTGG......................................................................................181202.00202195000511
.....................................................................................ATGTGATGTGACGTAGTGGAAA...................................................................................221124.00124900003301
.......................................................................................GTGATGTGACGTAGTGGAAA...................................................................................201105.00105104000100
........................................................................................TGATGTGACGTAGTGGAA....................................................................................181102.00102100000110
......................................................................................TGTGATGTGACGTAGTGGAACAC.................................................................................23189.0089660007016
......................................................................................TGTGATGTGACGTAGTGGAACATT................................................................................24173.0073470004121
.......................................................................................GTGATGTGACGTAGTGGAACAT.................................................................................22169.006969000000
.....................................................................................ATGTGATGTGACGTAGTGGA.....................................................................................20168.006853020760
......................................................................................TGTGATGTGACGTAGTGGAACC..................................................................................22167.006759000800
.....................................................................................ATGTGATGTGACGTAGTGGAACA..................................................................................23167.0067490005013
......................................................................................TGTGATGTGACGTAGTGGAT....................................................................................20160.006054000411
.......................................................................................GTGATGTGACGTAGTGGAACT..................................................................................21158.005858000000
......................................................................................TGTGATGTGACGTAGTGGAATT..................................................................................22153.0053420001100
.......................................................................................GTGATGTGACGTAGTGGAACAA.................................................................................22146.004646000000
.....................................................................................ATGTGATGTGACGTAGTGGAAT...................................................................................22140.004033000412
......................................................................................TGTGATGTGACGTAGTGGAACG..................................................................................22139.003934000410
......................................................................................TGTGATGTGACGTAGTGGAG....................................................................................20135.003530000410
.........................................................................................GATGTGACGTAGTGGAAC...................................................................................18134.003433000010
......................................................................................TGTGATGTGACGTAGTGGAACAG.................................................................................23128.002821000610
.......................................................................................GTGATGTGACGTAGTGGAACG..................................................................................21123.002323000000
.......................................................................................GTGATGTGACGTAGTGGAAT...................................................................................20122.002222000000
......................................................................................TGTGATGTGACGTAGTGGAACAAT................................................................................24122.002215000610
.........................................................................................GATGTGACGTAGTGGAACA..................................................................................19121.002121000000
......................................................................................TGTGATGTGACGTAGTGGAAAT..................................................................................22119.001912000502
..........................................................................................ATGTGACGTAGTGGAACA..................................................................................18112.001210000200
......................................................................................TGTGATGTGACGTAGTGGAACATTT...............................................................................25111.00119000200
...........................................................................................TGTGACGTAGTGGAACAT.................................................................................18111.001100000011
......................................................................................TGTGATGTGACGTAGTGGAC....................................................................................2019.0099000000
.......................................................................................GTGATGTGACGTAGTGGAACAC.................................................................................2219.0099000000
......................................................................................TGTGATGTGACGTAGTGGG.....................................................................................1918.0088000000
....................................................TG--------CGTCTTTTGAATTCGAACAGTTT.........................................................................................................2518.0080000008
......................................................................................TGTGATGTGACGTAGTGGAACACT................................................................................2417.0074000201
.......................................................................................GTGATGTGACGTAGTGGAACC..................................................................................2117.0077000000
..............................TCCG--AGTTAAG-TTTCATTCTG--------CGTCT...........................................................................................................................2616.0060000006

Generated: 10/20/2015 at 07:36 PM