dmo_1668

Name	Class	Family	Strand
Helitron-1_DVir	RC	Helitron	-
Homo6	DNA	hAT-Pegasus	-

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ACTGCGAGCAAAACTGTATAGACGCTGTGATCAAGCTCAAAAGTGCGCTCGTACGTATCATAATTAATTATTACCTATTTATACCCAGAGCCCATTCAATGTGGGAAATCAGGGTATAATGGTATTGTTAAATATATGTAGCAGAAGGAGGCGTGGCAAACACTATAAAGTTATACGGTTAATGTTCTTGATCAAGGCGATGAGCTGATTCGATTTTGTCCTGTAAGTCTTTGTATTCGTAAGTCCGTATG ************************************************.(((((((.((..(((((...((((...((((((((.((.(((((.....)))))...)).)))))))).))))..))))))))))))))..((((..((.((((...(((........))).)))).))....)))).............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	V110 male body	M060 embryo
.....................................................................................................TGGGAAATCAGGGTATAATGGTATTG............................................................................................................................	26	0	9	0.44	4	3	1	0
.....................................................................................................TGGGAAATCAGGGTATAATGGTATT.............................................................................................................................	25	0	10	0.40	4	4	0	0
.....................................................................................................TGGGAAATCAGGGTATAATGGTA...............................................................................................................................	23	0	13	0.31	4	4	0	0
...................................................................................................................................................................................................GGCGATGATATGATTCGA......................................	18	2	7	0.14	1	1	0	0
......................................................................................................GGGAAATCAGGGTATAATGGTATT.............................................................................................................................	24	0	10	0.10	1	1	0	0
..............................................................................................................................................AGAAGGAGGCGTGGCAAACAAAA......................................................................................	23	2	11	0.09	1	0	0	1
...........................................................................................................ATCAGGGTATAATGGTATTG............................................................................................................................	20	0	12	0.08	1	1	0	0
.....................................................................................................TGGGAAATCAGGGTATAATGGTATC.............................................................................................................................	25	1	20	0.05	1	0	0	1
.....................................................................................................TGGGAAATCAGGGCATAATGGTATTG............................................................................................................................	26	1	20	0.05	1	0	1	0

TGACGCTCGTTTTGACATATCTGCGACACTAGTTCGAGTTTTCACGCGAGCATGCATAGTATTAATTAATAATGGATAAATATGGGTCTCGGGTAAGTTACACCCTTTAGTCCCATATTACCATAACAATTTATATACATCGTCTTCCTCCGCACCGTTTGTGATATTTCAATATGCCAATTACAAGAACTAGTTCCGCTACTCGACTAAGCTAAAACAGGACATTCAGAAACATAAGCATTCAGGCATAC ************************************************.(((((((.((..(((((...((((...((((((((.((.(((((.....)))))...)).)))))))).))))..))))))))))))))..((((..((.((((...(((........))).)))).))....)))).............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	M060 embryo
.........................................................................................................................................................................CAATATGCCAATTACAAGAACTAGTT........................................................	26	0	1	1.00	1	1	0
...................................................................................................ACACCTCTTATTCCCATATTA...................................................................................................................................	21	3	13	0.08	1	1	0
...........................................................................................................................................CCGTCTTCCTCCGCACCGTTTGTG........................................................................................	24	1	20	0.05	1	0	1

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6500:27706912-27707162 -	dmo_1668	ACTGCGAGCAAA-ACTGTATAGACG-CTGTGATCAA--GCTCAAAAGTG-CGCTCG-----------------TACGTATCAT-AATTAATT-------------------------ATTACCTATTTATACCCAGAGCCCATTCAATG-TGGGAAATCAGGGTATAATGGTAT-TGTTA-A-------ATATATGTAGC----AGAAGGAGGCGTGGCAAACACTATAAAGTTATACGGTTAATGTTCTTGATCAAGGCGATGAGCTGATTCGATTTTGTCCTGTAAGTCTTTGTATT----CGTAAGTCCGTATG
droVir3	scaffold_12936:403441-403681 +		AGCAA-------ATCTG---A-A----TGTACTCAA-----CAAAAGTAGC---CG--TTAGTGAAAATAATA-AAG---------TGAAAT----------------------------ATTTTTTTATACCCTGAACCCATTAAAAAT--GGGTATAAGGGTATATTGTATT-TGTGCGAAATCCAAATGTATGTAACATGCAGAAGGAAACATATCCGACCCCGTAAAGTA-T-----ATATATTCTCGATTAGCATCAATAGCTGAGTCGATCTAGCCATGTCCGTCTGTCTGTC----CGTCCGTCCGTCTG
droGri2	scaffold_15110:24412754-24412968 -		AAATA-------ATATG---A-----------TAAT--ATTGA-----A-AGATAA-----------------TACAT-------ATATAAT-------------------------ATCGCATTTTTATACCCAGAATCCATTAAAAAT--GGGTCAAAGGGTATAATGGTTT-TGTGATA-------ATGTATGTAACAGGCAGAAGGAAGCATCTCCAACCCCATAAAGTA-TATAT-GTATATTCTTGATCAGGGTCAACAGCCGAGTCGATATAGCCATGTCCGTCTGTCCGTC----C--------GTCTG
droWil2	scf2_1100000004512:166936-167164 -		AACATTATA---AACTG---A-G---TTGCACTTAA--GAGAAAAATTG-CATTCG-----------------TGAGTA-------TGAACT-------------------------CTAGAATTTTTATACCATACACCCA--------TAGGGTGAAATGGTATATTAAAGT-CGCCAAA-------ATGTATGTAACAGGCAGAAGGAAGCATCTCCGACCCCACAAAGTA-T-----ATATATTCTTGATCAGGATCAAAAACTGAGTCGATCTAGCCATGTCCGTCTGTCCGTC----CGTCCGTCCGTCCG
dp5	Unknown_group_76:3033-3229 -		TGTAA------------------------------------------------TAA----------------------TTCA--TAAAAAAT---------------------------ATTATTTTTATACCCGATACTCG----AAAT--GAGTA-TTGGATATATTAGATT-TTTGGTAAAACTGGATGAGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTA-T-----ATATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCATGTCTGTCTGTCCGTC----TGTCCGTCCGT---
droPer2	scaffold_544:5236-5486 -		CGGGTA----TA-ACCGTAGAGTTG-CGGTGTC------------------------------------------CGCAGCAA-CTCACAACGTTCCCCCTCGTTTTCCTTTCTTTTTTCCGATTTTTATACCCGATACTCA----AAAT--GAGTATTGGGGTATATTAGATT-TGTGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTA-T-----ATATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCATGTCTGTCTGTCCGTC----CGTCCGTCTGTCCG
droAna3	scaffold_12276:46873-47012 -		---------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGTATTATAATTT-TGGTAAA-------AAGTGTGCAACACAGTGAAGGAGACATCACCGACCCTATAAAGTA-T-----ATATATTCTTGATCAGGAACACCTCCTGAGTCGATATGAGCATGTCCGTCTGTCCGTC----TGTCTGTCTGTCTG
droBip1	scf7180000395488:40287-40460 -		ATAATTATA---------------------------------------------------------------------------------TA-------------------------TATATATATTTATACCC-----TTG--------CA------GAGGGTATTATAATTT-TGGTCAA-------AAGTGTGCAACGCAGTGAAGGAGACATCTCAGACCCTATAAAGTA-T-----ATATATTCTTGATCAGGATCACCTGCTGAGTTGATATGAGCATGTCCGTCTGTCCGTC----TGTCTGTCCGTCTG
droKik1	scf7180000301585:1541-1732 -		TGCGT------------------------------------------------TTTTACTTATATATATA--------------------TT--------TTATTAT----------ATTATATTTTTATACCC---------------------TTGCAGGGTATTATAATTT-CAGTCAG-------AAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTA-T-----ATATATTCTTGATCAGCATCAACAGCCGAGTCGATCTAGCCATGTCCGTCTGTCCGTC----CGTCTGTCCGTCCG
droFic1	scf7180000453221:26325-26504 -		CAAAATT---------------------------------------------------------------------------------GAGT-------------------------TTTTGATTTTTATACCC-----TGG--------AAAACCAAAAGGGTATTATAATTT-CAGTCAG-------AAGTTTGCAACGCAGTGAAGGAGACACCTCAGACCCCATAAAGTA-T-----ATATATTCTTGATCAGCATCACGAGCAGAATCGAAATCCGTCTGTACGTCTGTCCGTC----TGTCCGTCTGTCCG
droEle1	scf7180000491256:4627-4791 +		TACTTA----------------------------------------------------------------------GC------------AG-------------------------AACTTATTTTTATACCCGTTACTCG--------TGAAGTAAATGGGTATATTAAATT-CGTTAAA-------GAGT-----------AGAAGGAAGCGTTTCCGACCCCAAAAAGTA-T-----ATATATTCTTGATAAGGTTAAATTGCCGCGTCGATCAAGTCATGTCCGTCTGCCTGTC------------CGTCTC
droRho1	scf7180000779165:35440-35661 -		CAAAA-------ATTTG--CA-ACG-CAGTGATCAA--G-----------T---CG--TTTCCGATCAT-ATA-AAGTG---------TAAT-------------------------AAAATATATTTATACCCGTTACTCG--------TAGAGTAAAAGGGTATATTGTATT-CGTGCAA-------AAGTATGTAACAGGTAAAAGGAAGCGTTTCCGACCCTATAAAGTA-T-----ATATGTTCTTGTTCAGGATCACTAGCCGAGTCGATCTAGCCATGTCCGTCTGTCTGTC----CG----TCCGTATG
droBia1	scf7180000301390:79732-79930 +		TCGTA----------------------------------------------------------------------TGCATCAA-GTTAAAATAACAACTTTTGATAT----------CCAAACTTTTTATACCC-----TTG--------CA------GAGGGTATAATGATTT-CAGTCAG-------AAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCTCATAAAGTA-T-----ATATATTCTTGATTAGCGTCACAAGACGAGTCGATCTAGCCATGTCCGTCTGTCCGTC----CGTATGTCCGTCCA
droTak1	scf7180000414268:2866-3110 +		ATTTCTATAAAA-ACTGGTTGGATGGATTTAATTCA--AACCAATTGTA-TATTAT-----------------TAAGTGTCATTTAAAAAAC-------------------------ATCCACTAATTATACCCGTTACTCG--------TAGAGTAAAAGGGTATATTGTATT-CGTGCAA-------AAGTATGTAACACCTAGAAGGAAGCGTTTCCGACCCCATAGAGTA-T-----ATATATTCTTGATCAGGGTCATGAGCCGAGTCGATATAGCCATGTCCGTCTGTCCGTC----CGTCTGTCCGTCTG
droEug1	scf7180000409724:2060-2299 +		ACAGTAACGGGT-ATCTTATAGTCG-CGGCACTCGA-----CTAAAGCG-T--TTTCTCCTGT---------------T---------------------TTTATTT----------GTCTATTTTTTATACCCGTTACTCG--------TAGAGTAAAGGGGTATATTAGATTTCGTTTAA-------AAGTATGTAACAGGTAGAAGGAAGAGTTTCCGACCCTACAAGGTA-T-----ATATATTCTTGATCAGGATCAATAGCGATGTCGATTGAGCCATGTCCGTCAGTCCGTCCATCCGTCTGTCTGTCGG
dm3	chrX:92794-92973 +		TCTTA----------------------------------------------------------------------CCTTTCAA-TATAAAATA-----------------------TTCCCCATTTTTATATCCGTTACTCG--------TAGAGTAAAAGGAAATACTAGATT-CGTTGAA-------AAGTATGTAACAGGCAGAAGGAAGCGGATCTAACGATATAAAGTA-TATAT-GTATACTCTTGACCAGGTTCGATAGGCG-GTCGAACTGTCCGTG------------------------TCCGTCTG
droSim2	node_22417:2336-2505 +		TTACA-------------------------------------------------------------------------------------------------------------------ACCTGTTTATTCACATTACTCG--------TAGAGGAAAATGGTATACTAGATT-CGTTGAA-------AAGTATGTAACAGGCAAAAGGCAGTGTTTCCGACCATAAAAAGTA-TACAT-ATATATTCTTGATCACGATCAATAGCCGAGTCGATCTGA----------CTGTGCGTC----TGTTCGTCCGTATG
droSec2	scaffold_18:1188768-1188944 -		TAATT------------------------------------------------------------------------------------------------------------------ATTATTATTATACCCGTTACTCG--------TACAGTAAAAGGCTATACTAGATT-CGTTGAA-------AAGTATGTGACAGGCAGAAGGAAGCGTTTCCGACCATATAAAGTG-T-----ACATATTCTTGATCAGGATCAATAGCCGAGTCGATCTGACACTATCCGTCTGTCTGTC----CGTCCGTCTGTTTG
droYak3	v2_chrUn_4146:2725-2964 -		AAAGCATGCAG--ACTCCACCGACA-TTGTTTCCAATTGTTTCCACGCG-CACTCC-----------------ATCGTTTTAA-TA----TT-------------------------TTATAATATTTATACCCGTTACTCG--------TAGAGTAAAAGGGTATACTAGATT-CGTTGAA-------AAGTATGTAACAGGCAGAAGGAAGCGTTTTCGACCATATAAAGTA-T-----ATATATTCTTGATCAGGATCAATAGCCGAGTCGATTTGGCCATGTCTGTCTGTCCGTC----CGTCTGTCTGTCCG
droEre2	scaffold_4770:2895893-2896071 -		AAAAAT----------------------------------------------------------------------GTG-----------TC-----------------------CATACATATTTTTATACCCGTTACTCG--------TAGACTAAAAGGGTATACTAGATT-CGTTGAA-------AAGTATGTAATAGGCAGAATTAGGCGTTTCCGACAATATAAGGTA-TACAT-ATATATTCTTGATCAGGATCAATAGCCGAGTCGAACTAACCATGTCCGTCTGTCC----------------GTATG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

ACTGCGAGCAAA-ACTGTATAGACG-CTGTGATCAA--GCTCAAAAGTG-CGCTCG-----------------TACGTATCAT-AATTAATT-------------------------ATTACCTATTTATACCCAGAGCCCATTCAATG-TGGGAAATCAGGGTATAATGGTAT-TGTTA-A-------ATATATGTAGC----AGAAGGAGGCGTGGCAAACACTATAAAGTTATACGGTTAATGTTCTTGATCAAGGCGATGAGCTGATTCGATTTTGTCCTGTAAGTCTTTGTATT----CGTAAGTCCGTATG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
......................................................................................................................................................TGGGAAATCAGGGTATAATGGTAT-TG............................................................................................................................................	26	9	0.44	4	3	0	0	0	0	1
......................................................................................................................................................TGGGAAATCAGGGTATAATGGTAT-T.............................................................................................................................................	25	10	0.40	4	4	0	0	0	0	0
......................................................................................................................................................TGGGAAATCAGGGTATAATGGTA................................................................................................................................................	23	13	0.31	4	4	0	0	0	0	0
.......................................................................................................................................................GGGAAATCAGGGTATAATGGTAT-T.............................................................................................................................................	24	10	0.10	1	1	0	0	0	0	0
............................................................................................................................................................ATCAGGGTATAATGGTAT-TG............................................................................................................................................	20	12	0.08	1	1	0	0	0	0	0
......................................................................................................................................................TGGGAAATCAGGGTATAATGGTAT-C.............................................................................................................................................	25	20	0.05	1	0	0	0	0	1	0

droVir3

AGCAA-------ATCTG---A-A----TGTACTCAA-----CAAAAGTAGC---CG--TTAGTGAAAATAATA-AAG---------TGAAAT----------------------------ATTTTTTTATACCCTGAACCCATTAAAAAT--GGGTATAAGGGTATATTGTATT-TGTGCGAAATCCAAATGTATGTAACATGCAGAAGGAAACATATCCGACCCCGTAAAGTA-T-----ATATATTCTCGATTAGCATCAATAGCTGAGTCGATCTAGCCATGTCCGTCTGTCTGTC----CGTCCGTCCGTCTG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..............................................................................................................................................TTAAAAAT--GGGTATAAGGGTATATTG...................................................................................................................................................	26	20	4.25	85	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	77	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................TTAAAAAT--GGGTATAAGGGTATAT.....................................................................................................................................................	24	20	2.75	55	0	0	0	0	0	0	0	0	39	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TCCAAATGTATGTAACATGCAGAAGG...........................................................................................................	26	20	2.65	53	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	9	6	6	3	1	1	0	0	2	0	21	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................TTAAAAAT--GGGTATAAGGGTATATT....................................................................................................................................................	25	20	2.20	44	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
............................................................AGTGAAAATAATA-AAG---------TGAAAT----------------------------ATTT.................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................TTAAAAAT--GGGTATAAGGGTATATTGT..................................................................................................................................................	27	20	0.65	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................G---A-A----TGTACTCAA-----CAAAAGTAGC---.......................................................................................................................................................................................................................................................................	22	20	0.65	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................G---A-A----TGTACTCAA-----CAAAAGTAGC---CG--TTA................................................................................................................................................................................................................................................................	27	20	0.50	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................G--TTAGTGAAAATAATA-AAG---------TGAAAT----------------------------A....................................................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............TG---A-A----TGTACTCAA-----CAAAAGTAGC---C......................................................................................................................................................................................................................................................................	24	20	0.40	8	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TCCAAATGTATGTAACATGCAGAAGGA..........................................................................................................	27	20	0.35	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	1	1	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.GCAA-------ATCTG---A-A----TGTACTCAA-----CAAAAG..............................................................................................................................................................................................................................................................................	26	20	0.35	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................TACTCAA-----CAAAAGTAGC---CG--TTAGTGA............................................................................................................................................................................................................................................................	26	20	0.35	7	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............TCTG---A-A----TGTACTCAA-----CAAAAG..............................................................................................................................................................................................................................................................................	21	20	0.30	6	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................G---A-A----TGTACTCAA-----CAAAAGTAGC---CG--TTAG...............................................................................................................................................................................................................................................................	28	20	0.30	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TCCAAATGTATGTAACATGCAGAAG............................................................................................................	25	20	0.30	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	1	0	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..CAA-------ATCTG---A-A----TGTACTCAA-----CA..................................................................................................................................................................................................................................................................................	21	20	0.25	5	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.GCAA-------ATCTG---A-A----TGTACTCAA-----CAAAAGTA............................................................................................................................................................................................................................................................................	28	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............TG---A-A----TGTACTCAA-----CAAAAGTAGC---CG--TTAG...............................................................................................................................................................................................................................................................	29	20	0.20	4	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............TG---A-A----TGTACTCAA-----CAAAAGTAGC---.......................................................................................................................................................................................................................................................................	23	20	0.15	3	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................GTACTCAA-----CAAAAGTAGC---CG--TTAGTG.............................................................................................................................................................................................................................................................	26	20	0.15	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................TCGATCTAGCCATGTCCGTCTG........................	22	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................TACTCAA-----CAAAAGTAGC---CG--TTAGTGAAA..........................................................................................................................................................................................................................................................	28	20	0.15	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................TACTCAA-----CAAAAGTAGC---CG--TTAGTGAAAA.........................................................................................................................................................................................................................................................	29	20	0.15	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TAAAAAT--GGGTATAAGGGTATATTGTA.................................................................................................................................................	27	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................G---A-A----TGTACTCAA-----CAAAAGTAGC---CG--T..................................................................................................................................................................................................................................................................	25	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................A-A----TGTACTCAA-----CAAAAGTAGC---CG--T..................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................TACTCAA-----CAAAAGTAGC---CG--TTAG...............................................................................................................................................................................................................................................................	23	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................TATTGTATT-TGTGCGAAATCCAAAT..............................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..CAA-------ATCTG---A-A----TGTACTCAA-----CAA.................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................C---CG--TTAGTGAAAATAATA-A..................................................................................................................................................................................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................TACTCAA-----CAAAAGTAGC---CG--...................................................................................................................................................................................................................................................................	19	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............TG---A-A----TGTACTCAA-----CAAAAGTAGC---CG--...................................................................................................................................................................................................................................................................	25	20	0.10	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................TCCGTCTGTCTGTC----CGTCCGTCCGTCTG	28	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
....................A-A----TGTACTCAA-----CAAAAGTAGC---CG--TTAG...............................................................................................................................................................................................................................................................	27	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................ATCTAGCCATGTCCGTCTGTC......................	21	20	0.10	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.GCAA-------ATCTG---A-A----TGTACTCAA-----....................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............TG---A-A----TGTACTCAA-----CAAAAGTAGC---CG--TC.................................................................................................................................................................................................................................................................	27	20	0.10	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TCCAAATGTATGTAACATGCA................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................GTACTCAA-----CAAAAGTAGC---CG--...................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................C---CG--TTAGTGAAAATAATA-AA.................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.GCAA-------ATCTG---A-A----TGTACTCAA-----C...................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................CAAAAGTAGC---CG--TTAGTGAAAATAATA-A..................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................TCTAGCCATGTCCGTCTGTC......................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................TCAA-----CAAAAGTAGC---CG--TTAGTGAAA..........................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............TCTG---A-A----TGTACTCAA-----CAAAAGTAGC---CG--...................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................A-----CAAAAGTAGC---CG--TTAGTGAAAATAATA-...................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................TTAAAAAT--GGGTATAAGGG..........................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............TCTG---A-A----TGTACTCAA-----CAAAAGTAGC---CG--TT.................................................................................................................................................................................................................................................................	29	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...................................A-----CAAAAGTAGC---CG--TTAGTGAAAATAAA.....................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................AAAGTAGC---CG--TTAGTGAAAATAA......................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................G---A-A----TGTACTCAA-----CAAAAGTAGC---C......................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................ACTCAA-----CAAAAGTAGC---CG--TTAGTGA............................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............TCTG---A-A----TGTACTCAA-----CAAAAGTAGC---C......................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
......................A----TGTACTCAA-----CAAAAGTAGC---CG--TTAGT..............................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................GGTATAAGGGTATATTGTATT-..............................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................TACTCAA-----CAAAAGTAGC---CG--TTAGTGACC..........................................................................................................................................................................................................................................................	28	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................AGTCGATCTAGCCATGTCCGTCTGTCT.....................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............TCTG---A-A----TGTACTCAA-----CAAAAGTAGC---.......................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................TCTAGCCATGTCCGTCTGTCTG....................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................TCAA-----CAAAAGTAGC---CG--TTAGTGAAAA.........................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................TATTGTATT-TGTGCGAAATCCAAATG.............................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................GCTGAGTCGATCTAGCCATGTCCGT...........................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................CCAAATGTATGTAACATGCAGAAGG...........................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................A----TGTACTCAA-----CAAAAGTAGC---.......................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....A-------ATCTG---A-A----TGTACTCAA-----CAAAAGTAGC---C......................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................GTATT-TGTGCGAAATCCAAAT..............................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.GCAA-------ATCTG---A-A----TGTACTCAA-----CAA.................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............CTG---A-A----TGTACTCAA-----CAAAAGTAGC---CG--T..................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................CGTCTGTCTGTC----CGTCCGTC......	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................TACTCAA-----CAAAAGTAGC---CG--TTAGTGTCC..........................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..................................AA-----CAAAAGTAGC---CG--TTAGTGAAAATA.......................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................G---A-A----TGTACTCAA-----CAAAAGTAGC---CT--...................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................CG--TTAGTGAAAATAATA-AA.................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................CAA-----CAAAAGTAGC---CG--TTAGTGAAA..........................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.GCAA-------ATCTG---A-A----TGTACTC...........................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AGCAA-------ATCTG---A-A----TGTACTCAA-----CAAAAG..............................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................CAAATGTATGTAACATGCAGAAGG...........................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................TGAGTCGATCTAGCCATGTCC.............................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................ACTCAA-----CAAAAGTAGC---CG--TTAGTG.............................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................GTACTCAA-----CAAAAGTAGC---CG--TTAG...............................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................CAAATGTATGTAACATGCAGAAG............................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................GATCTAGCCATGTCCGTCTGT.......................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................T--GGGTATAAGGGTATATTGTATT-..............................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................TGTATT-TGTGCGAAATCCAAAT..............................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................GTACTCAA-----CAAAAGTAGC---CG--TTAGT..............................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................ATATTGTATT-TGTGCGAAATCCAA................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................TCAA-----CAAAAGTAGC---CG--TTAGTG.............................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TCCAAATGTATGTAACATGCAGA..............................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................TGTACTCAA-----CAAAAGTAGC---CG--TTAGTG.............................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

AAATA-------ATATG---A-----------TAAT--ATTGA-----A-AGATAA-----------------TACAT-------ATATAAT-------------------------ATCGCATTTTTATACCCAGAATCCATTAAAAAT--GGGTCAAAGGGTATAATGGTTT-TGTGATA-------ATGTATGTAACAGGCAGAAGGAAGCATCTCCAACCCCATAAAGTA-TATAT-GTATATTCTTGATCAGGGTCAACAGCCGAGTCGATATAGCCATGTCCGTCTGTCCGTC----C--------GTCTG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.................................................................................................................................................................................................ATGTAACAGGCAGAAGGAAGC.......................................................................................................	21	20	0.05	1	1	0

droWil2

AACATTATA---AACTG---A-G---TTGCACTTAA--GAGAAAAATTG-CATTCG-----------------TGAGTA-------TGAACT-------------------------CTAGAATTTTTATACCATACACCCA--------TAGGGTGAAATGGTATATTAAAGT-CGCCAAA-------ATGTATGTAACAGGCAGAAGGAAGCATCTCCGACCCCACAAAGTA-T-----ATATATTCTTGATCAGGATCAAAAACTGAGTCGATCTAGCCATGTCCGTCTGTCCGTC----CGTCCGTCCGTCCG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
......................................................................................................................TAGAATTTTTATACCATACACCCA--------.......................................................................................................................................................................	24	5	0.20	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................TGAGTCGATCTAGCCATGTCCGTCT.........................	25	20	0.05	1	0	0	0	1	0
.................................................................................................................................................................................CCAAA-------ATGTATGTAACAGGCAGA..............................................................................................................	23	20	0.05	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................GATCTAGCCATGTCCGTCTG........................	20	20	0.05	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................GCCATGTCCGTCTGTCCGTC----CGTCC.........	25	20	0.05	1	0	0	0	1	0

dp5

TGTAA------------------------------------------------TAA----------------------TTCA--TAAAAAAT---------------------------ATTATTTTTATACCCGATACTCG----AAAT--GAGTA-TTGGATATATTAGATT-TTTGGTAAAACTGGATGAGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTA-T-----ATATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCATGTCTGTCTGTCCGTC----TGTCCGTCCGT---	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
................................................................................................................................................................................................................................................................................CGATTGAGCCATGTCTGTCTG........................	21	20	2.25	45	0	45	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................TCTTGATCAGCATCAATAGCCGAGTCG...........................................	27	20	0.35	7	0	7	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................TGAGTGTAACGTCCAGAAGGA..........................................................................................................	21	3	0.33	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................GATGAGTGTAACGTCCAGAAGG...........................................................................................................	22	4	0.25	1	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................TGAGCCATGTCTGTCTGTCCG....................	21	20	0.25	5	0	0	0	0	0	0	0	5	0	0
...............................................................................................................................................................................................................................................................................TCGATTGAGCCATGTCTGTCTG........................	22	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................T---------------------------ATTATTTTTATACCCGATACT.................................................................................................................................................................................	22	10	0.10	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................TATATTCTTGATCAGCATCAATA....................................................	23	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................ATTATTTTTATACCCGATACC.................................................................................................................................................................................	21	13	0.08	1	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................................................................................GGAATCGTTTCCGACCCCATAA.......................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................TGAGCCATGTCTGTCTGT.......................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................TATTCTTGATCAGCATCAATAGCCG................................................	25	20	0.05	1	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................................TGAGCCATGTCTGTCTGTCC.....................	20	20	0.05	1	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................ATTCTTGATCAGCATCAATAGC..................................................	22	20	0.05	1	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................GCATCAATAGCCGAGTCGATT........................................	21	20	0.05	1	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................TGTCTGTCTGTCCGTC----TGTCCGTC......	24	20	0.05	1	0	0	0	0	0	0	0	1	0	0
......................................................................................................................................................................................................................................................................................AGCCATGTCTGTCTGTCCG....................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................................AGCCATGTCTGTCTGTCCGTC----T.............	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................TGTCTGTCTGTCCGTC----TGTCCG........	22	20	0.05	1	0	0	0	0	0	0	1	0	0	0
........................................................................................................................................................................................................................................................................................CCATGTCTGTCTGTCCGTC----TGTCCG........	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

CGGGTA----TA-ACCGTAGAGTTG-CGGTGTC------------------------------------------CGCAGCAA-CTCACAACGTTCCCCCTCGTTTTCCTTTCTTTTTTCCGATTTTTATACCCGATACTCA----AAAT--GAGTATTGGGGTATATTAGATT-TGTGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTA-T-----ATATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCATGTCTGTCTGTCCGTC----CGTCCGTCTGTCCG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..............................GTC------------------------------------------CGCAGCAA-CTCACAACGTTC.............................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0

droAna3

---------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGTATTATAATTT-TGGTAAA-------AAGTGTGCAACACAGTGAAGGAGACATCACCGACCCTATAAAGTA-T-----ATATATTCTTGATCAGGAACACCTCCTGAGTCGATATGAGCATGTCCGTCTGTCCGTC----TGTCTGTCTGTCTG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
....................................................................................................................................................................................................................................................................................ATGAGCATGTCCGTCTGTCCGTC----TG............	25	20	0.10	2	2	0	0	0	0	0
...............................................................................................................................................................................................GTGTGCAACACAGTGAAGGA..........................................................................................................	20	20	0.10	2	0	0	0	0	0	2
...............................................................................................................................................................................................GTGTGCAACACAGTGAAGGAG.........................................................................................................	21	20	0.05	1	0	0	0	0	0	1
................................................................................................................................................................................................................................................................................CGATATGAGCATGTCCGTCTGTCCGT...................	26	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................CCTGAGTCGATATGAGCATGTCCG............................	24	20	0.05	1	0	0	0	0	0	1
................................................................................................................................................................................................TGTGCAACACAGTGAAGGAGACAT.....................................................................................................	24	20	0.05	1	1	0	0	0	0	0
.................................................................................................................................................................GGTATTATAATTT-TGGTAAA-------................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
.....................................................................................................................................................................................................AACACAGTGAAGGAGACATC....................................................................................................	20	20	0.05	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................CGATATGAGCATGTCCGTCTG........................	21	20	0.05	1	0	0	0	1	0	0
...........................................................................................................................................................................................................GTGAAGGAGACATCACCGACCC............................................................................................	22	20	0.05	1	1	0	0	0	0	0

droBip1

ATAATTATA---------------------------------------------------------------------------------TA-------------------------TATATATATTTATACCC-----TTG--------CA------GAGGGTATTATAATTT-TGGTCAA-------AAGTGTGCAACGCAGTGAAGGAGACATCTCAGACCCTATAAAGTA-T-----ATATATTCTTGATCAGGATCACCTGCTGAGTTGATATGAGCATGTCCGTCTGTCCGTC----TGTCTGTCCGTCTG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TGCGT------------------------------------------------TTTTACTTATATATATA--------------------TT--------TTATTAT----------ATTATATTTTTATACCC---------------------TTGCAGGGTATTATAATTT-CAGTCAG-------AAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTA-T-----ATATATTCTTGATCAGCATCAACAGCCGAGTCGATCTAGCCATGTCCGTCTGTCCGTC----CGTCTGTCCGTCCG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CAAAATT---------------------------------------------------------------------------------GAGT-------------------------TTTTGATTTTTATACCC-----TGG--------AAAACCAAAAGGGTATTATAATTT-CAGTCAG-------AAGTTTGCAACGCAGTGAAGGAGACACCTCAGACCCCATAAAGTA-T-----ATATATTCTTGATCAGCATCACGAGCAGAATCGAAATCCGTCTGTACGTCTGTCCGTC----TGTCCGTCTGTCCG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TACTTA----------------------------------------------------------------------GC------------AG-------------------------AACTTATTTTTATACCCGTTACTCG--------TGAAGTAAATGGGTATATTAAATT-CGTTAAA-------GAGT-----------AGAAGGAAGCGTTTCCGACCCCAAAAAGTA-T-----ATATATTCTTGATAAGGTTAAATTGCCGCGTCGATCAAGTCATGTCCGTCTGCCTGTC------------CGTCTC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CAAAA-------ATTTG--CA-ACG-CAGTGATCAA--G-----------T---CG--TTTCCGATCAT-ATA-AAGTG---------TAAT-------------------------AAAATATATTTATACCCGTTACTCG--------TAGAGTAAAAGGGTATATTGTATT-CGTGCAA-------AAGTATGTAACAGGTAAAAGGAAGCGTTTCCGACCCTATAAAGTA-T-----ATATGTTCTTGTTCAGGATCACTAGCCGAGTCGATCTAGCCATGTCCGTCTGTCTGTC----CG----TCCGTATG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TCGTA----------------------------------------------------------------------TGCATCAA-GTTAAAATAACAACTTTTGATAT----------CCAAACTTTTTATACCC-----TTG--------CA------GAGGGTATAATGATTT-CAGTCAG-------AAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCTCATAAAGTA-T-----ATATATTCTTGATTAGCGTCACAAGACGAGTCGATCTAGCCATGTCCGTCTGTCCGTC----CGTATGTCCGTCCA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ATTTCTATAAAA-ACTGGTTGGATGGATTTAATTCA--AACCAATTGTA-TATTAT-----------------TAAGTGTCATTTAAAAAAC-------------------------ATCCACTAATTATACCCGTTACTCG--------TAGAGTAAAAGGGTATATTGTATT-CGTGCAA-------AAGTATGTAACACCTAGAAGGAAGCGTTTCCGACCCCATAGAGTA-T-----ATATATTCTTGATCAGGGTCATGAGCCGAGTCGATATAGCCATGTCCGTCTGTCCGTC----CGTCTGTCCGTCTG	Size	Hit Count	Total Norm	Total
No Reads

droEug1

ACAGTAACGGGT-ATCTTATAGTCG-CGGCACTCGA-----CTAAAGCG-T--TTTCTCCTGT---------------T---------------------TTTATTT----------GTCTATTTTTTATACCCGTTACTCG--------TAGAGTAAAGGGGTATATTAGATTTCGTTTAA-------AAGTATGTAACAGGTAGAAGGAAGAGTTTCCGACCCTACAAGGTA-T-----ATATATTCTTGATCAGGATCAATAGCGATGTCGATTGAGCCATGTCCGTCAGTCCGTCCATCCGTCTGTCTGTCGG	Size	Hit Count	Total Norm	Total
No Reads

dm3

TCTTA----------------------------------------------------------------------CCTTTCAA-TATAAAATA-----------------------TTCCCCATTTTTATATCCGTTACTCG--------TAGAGTAAAAGGAAATACTAGATT-CGTTGAA-------AAGTATGTAACAGGCAGAAGGAAGCGGATCTAACGATATAAAGTA-TATAT-GTATACTCTTGACCAGGTTCGATAGGCG-GTCGAACTGTCCGTG------------------------TCCGTCTG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.............................................................................................................................................................................T-CGTTGAA-------AAGTATGTAACAGGCAGA..............................................................................................................	26	20	10.30	206	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	3	0	0	2	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	8	7	2	0	0	6	0	24	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	2	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	2	0	0	0	1	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	0	0	0	0	0	0	46	0	5	0	0	0	0	0	0	0	0	29	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	13	4	0	0	0	0	0	0	0
............................................................................................................................................................................TT-CGTTGAA-------AAGTATGTAACAGGC.................................................................................................................	24	20	4.45	89	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	11	6	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	15	0	0	0	0	0	0	0	0	40	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................TTGAA-------AAGTATGTAACAGGCAGAAGGA..........................................................................................................	27	20	3.95	79	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	1	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12	0	1	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38	0	14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................TT-CGTTGAA-------AAGTATGTAACAGGCAGA..............................................................................................................	27	20	3.00	60	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	3	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	13	0	0	0	0	0	0	0	0	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................T-CGTTGAA-------AAGTATGTAACAGGC.................................................................................................................	23	20	2.70	54	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	13	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................T-CGTTGAA-------AAGTATGTAACAGGCAGAA.............................................................................................................	27	20	2.10	42	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	5	10	0	0	0	0	0	0	0	0	0	1	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0
.................................................................................................................................TATCCGTTACTCG--------TAGAGTAAAAGGA..........................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................TTGAA-------AAGTATGTAACAGGCAGAA.............................................................................................................	24	20	1.65	33	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14	0	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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............................................................................................................................................CG--------TAGAGTAAAAGGAAATACTAGA.................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...................................................................................................................................................................AATACTAGATT-CGTTGAA-------AAGT............................................................................................................................	22	4	0.50	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................TAAAAGGAAATACTAGATT-CGTTGAA-------AA..............................................................................................................................	28	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..............................................................................................................................................................AAGGAAATACTAGATT-CGTTGAA-------AA..............................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.....................................................................................................................................................................TACTAGATT-CGTTGAA-------AAGTATG.........................................................................................................................	23	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.....................................................................................................................................................................TACTAGATT-CGTTGAA-------AAGTATGTAACA....................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................ACTAGATT-CGTTGAA-------AAGTA...........................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................ATGTAACAGGCAGAAGGAA.........................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................T-CGTTGAA-------AAGTATGTAACAG...................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................TAGATT-CGTTGAA-------AAGTATG.........................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................TACTAGATT-CGTTGAA-------AAG.............................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................TACTAGATT-CGTTGAA-------AAGTATGTA.......................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...........................................................................................................................................................................ATT-CGTTGAA-------AAGTATGTAACAGGCA................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................AGTATGTAACAGGCAGAAGGA..........................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................TATGTAACAGGCAGAAGGAAGCG......................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................AA-------AAGTATGTAACAGGCAG...............................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................TACTAGATT-CGTTGAA-------AAGT............................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................AA-------AAGTATGTAACAGGCAGAAGGAAGC.......................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................GTATGTAACAGGCAGAAG............................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................CCGTTACTCG--------TAGAGTAAAAGG...........................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TTACA-------------------------------------------------------------------------------------------------------------------ACCTGTTTATTCACATTACTCG--------TAGAGGAAAATGGTATACTAGATT-CGTTGAA-------AAGTATGTAACAGGCAAAAGGCAGTGTTTCCGACCATAAAAAGTA-TACAT-ATATATTCTTGATCACGATCAATAGCCGAGTCGATCTGA----------CTGTGCGTC----TGTTCGTCCGTATG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
............................................................................................................................................................................TT-CGTTGAA-------AAGTATGTAACAGGC.................................................................................................................	24	20	11.15	223	0	0	0	0	0	0	0	0	153	0	0	0	39	31	0	0	0
....................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATCTGA----------CTGTGC.....................	26	1	7.00	7	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................TCTGA----------CTGTGCGTC----TGTTCGTCCGTA..	26	1	4.00	4	0	0	0	0	0	0	1	0	0	2	1	0	0	0	0	0	0
....................................................................................................................................................................................AA-------AAGTATGTAACAGGCAAAAGGCAG........................................................................................................	26	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
.........................................................................................................................................................................................................................TCCGACCATAAAAAGTA-TACAT-ATATA.......................................................................	27	1	3.00	3	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................TT-CGTTGAA-------AAGTATGTAACAGGCA................................................................................................................	25	20	2.30	46	0	0	0	0	0	0	0	0	0	0	0	0	46	0	0	0	0
....................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATCTGA----------CTGT.......................	24	1	2.00	2	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0
................................................................................................................................................................................................TATGTAACAGGCAAAAGGCAG........................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................GCCGAGTCGATCTGA----------CTGTGCGTC----..............	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
................................................................................................................................................................................................TATGTAACAGGCAAAAGGCAGTGTT....................................................................................................	25	1	2.00	2	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................................................................................................TATGTAACAGGCAAAAGGCAGTGT.....................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................AATAGCCGAGTCGATCTGA----------CTGT.......................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATCTGA----------CTGTG......................	25	1	2.00	2	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................CGAGTCGATCTGA----------CTGTGCGTC----TGT...........	25	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................TGA----------CTGTGCGTC----TGTTCGTCCGTA..	24	1	2.00	2	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................TT-CGTTGAA-------AAGTATGTAACAGGCAA...............................................................................................................	26	12	1.67	20	0	0	0	1	0	0	0	0	2	3	1	0	10	3	0	0	0
...................................................................................................................................................................................GAA-------AAGTATGTAACAGGCAA...............................................................................................................	20	20	1.00	20	0	0	0	0	20	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................ACAGGCAAAAGGCAGT.......................................................................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................TATATTCTTGATCACGATCAATAGC..................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................AA-------AAGTATGTAACAGGCAAAAGGCA.........................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATCTGA----------CTGTGG.....................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................AA-------AAGTATGTAACAGGCAAAAGGCAGT.......................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................AAATGGTATACTAGATT-CGTTGAA-------AAG.............................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TACAT-ATATATTCTTGATCACGAT.........................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................GTGCGTC----TGTTCGTCCGTATG	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................TTCTTGATCACGATCAATAGCCGAGT.............................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................AT-ATATATTCTTGATCACGATCAATA....................................................	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................TATGTAACAGGCAAAAGGCAGTG......................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................CACGATCAATAGCCGAGTCGATCTGA----------...........................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................TCG--------TAGAGGAAAATGGTATACTAGA.................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................................................................TGGTATACTAGATT-CGTTGAA-------AAGTA...........................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................AGGCAAAAGGCAGTGT.....................................................................................................	16	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................ATGGTATACTAGATT-CGTTGAA-------AAGTA...........................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................ATGGTATACTAGATT-CGTTGAA-------AAG.............................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................TGGTATACTAGATT-CGTTGAA-------AAG.............................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................AGGCAAAAGGCAGTGTT....................................................................................................	17	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TCACGATCAATAGCCGAGTCGATC........................................	24	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................T-CGTTGAA-------AAGTATGTAACAGGC.................................................................................................................	23	20	0.40	8	0	0	0	2	0	0	0	0	3	0	0	0	3	0	0	0	0
............................................................................................................................................................................TT-CGTTGAA-------AAGTATGTAACAGGCAAA..............................................................................................................	27	10	0.40	4	0	0	0	0	0	0	1	3	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................AA-------AAGTATGTAACAGGCAAAAGG...........................................................................................................	23	14	0.36	5	0	0	0	0	0	0	0	1	1	0	1	0	1	1	0	0	0
....................................................................................................................................................................................AA-------AAGTATGTAACAGGCAAAAGGCT.........................................................................................................	25	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATCTGA----------CT.........................	22	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................TT-CGTTGAA-------AAGTATGTAACAGG..................................................................................................................	23	20	0.30	6	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................TATGTAACAGGCAAAAGG...........................................................................................................	18	20	0.25	5	0	0	0	0	0	0	0	1	0	0	4	0	0	0	0	0	0
............................................................................................................................................................................TT-CGTTGAA-------AAGTATGTAACAGGCAAAAG............................................................................................................	29	10	0.20	2	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................GTATACTAGATT-CGTTGAA-------AAGTA...........................................................................................................................	24	20	0.20	4	0	0	0	0	0	0	2	0	0	2	0	0	0	0	0	0	0
.............................................................................................................................................................................T-CGTTGAA-------AAGTATGTAACAGGCAA...............................................................................................................	25	12	0.17	2	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0
..................................................................................................................................................................................TGAA-------AAGTATGTAACAGGCAAAAGG...........................................................................................................	25	13	0.15	2	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................GCAAAAGGCAGTGTTG...................................................................................................	16	7	0.14	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................TT-CGTTGAA-------AAGTATGTAACAGGCAAAA.............................................................................................................	28	10	0.10	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................TCAATAGCCGAGTCGATCT.......................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
....................................................................................................................................................................................AA-------AAGTATGTAACAGGCAA...............................................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
............................................................................................................................................................................TT-CGTTGAA-------AAGTATGTAACAGGCC................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
..................................................................................................................................................................GTATACTAGATT-CGTTGAA-------AAG.............................................................................................................................	22	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATCTGA----------C..........................	21	11	0.09	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................ATT-CGTTGAA-------AAGTATGTAACAGGCAA...............................................................................................................	27	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................TCAATAGCCGAGTCGATCTGA----------...........................	21	13	0.08	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................AATAGCCGAGTCGATCTGA----------...........................	19	17	0.06	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................AA-------AAGTATGTAACAGGCAAAAG............................................................................................................	22	19	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................................................TGAA-------AAGTATGTAACAGGCAA...............................................................................................................	21	19	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................................................................................................................................................................................................................AGCCGAGTCGATCTG......................................	15	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................TACTAGATT-CGTTGAA-------AAGTATGTA.......................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................ATT-CGTTGAA-------AAGTATGTAACAGGC.................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................AATAGCCGAGTCGATCT.......................................	17	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................GGTATACTAGATT-CGTTGAA-------AAGT............................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................TACTAGATT-CGTTGAA-------AAG.............................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................................GTATACTAGATT-CGTTGAA-------AAGT............................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................ATCAATAGCCGAGTCGATCTG......................................	21	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................ATACTAGATT-CGTTGAA-------AAGT............................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................CTAGATT-CGTTGAA-------AAGTATGT........................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................AA-------AAGTATGTAACAGGCAAAA.............................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................GATT-CGTTGAA-------AAGTATGTAACAGGCA................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................................TATACTAGATT-CGTTG.........................................................................................................................................	16	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................CTAGATT-CGTTGAA-------AAGTATGTAA......................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................TATGTAACAGGCAAAAG............................................................................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

TAATT------------------------------------------------------------------------------------------------------------------ATTATTATTATACCCGTTACTCG--------TACAGTAAAAGGCTATACTAGATT-CGTTGAA-------AAGTATGTGACAGGCAGAAGGAAGCGTTTCCGACCATATAAAGTG-T-----ACATATTCTTGATCAGGATCAATAGCCGAGTCGATCTGACACTATCCGTCTGTCTGTC----CGTCCGTCTGTTTG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
............................................................................................................................................................................TT-CGTTGAA-------AAGTATGTGACAGGC.................................................................................................................	24	3	0.67	2	1	1	0	0
...........................................................................................................................................................................................................................................T-----ACATATTCTTGATCAGGATCAATAGC..................................................	27	2	0.50	1	1	0	0	0
........................................................................................................................................................................................................................................................CTTGATCAGGATCAATAGCCGAGTC............................................	25	20	0.10	2	2	0	0	0
...............................................................................................................................................................................................................................................................AGGATCAATAGCCGAGTCGAT.........................................	21	20	0.05	1	0	1	0	0
...................................................................................................................................................................................................................................................................TCAATAGCCGAGTCGATCTGA.....................................	21	20	0.05	1	0	0	0	1
......................................................................................................................................................................................................................................................TTCTTGATCAGGATCAATAGCCGAGTCGA..........................................	29	20	0.05	1	1	0	0	0
.....................................................................................................................................................................................................................................................................AATAGCCGAGTCGATCTG......................................	18	20	0.05	1	0	0	1	0

droYak3

AAAGCATGCAG--ACTCCACCGACA-TTGTTTCCAATTGTTTCCACGCG-CACTCC-----------------ATCGTTTTAA-TA----TT-------------------------TTATAATATTTATACCCGTTACTCG--------TAGAGTAAAAGGGTATACTAGATT-CGTTGAA-------AAGTATGTAACAGGCAGAAGGAAGCGTTTTCGACCATATAAAGTA-T-----ATATATTCTTGATCAGGATCAATAGCCGAGTCGATTTGGCCATGTCTGTCTGTCCGTC----CGTCTGTCTGTCCG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...........................................................................................................................TATTTATACCCGTTACTCG--------TAGAGT.................................................................................................................................................................	25	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................TGTCTGTCTGTCCGTC----CGTCTGTC......	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................GCAGAAGGAAGCGTTTTCGACCATAT.........................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................CATGTCTGTCTGTCCGTC----CGTCTG........	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................TGGCCATGTCTGTCTGTCCGTC----CGTC..........	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................GTAAAAGGGTATACTAGATT-..............................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

AAAAAT----------------------------------------------------------------------GTG-----------TC-----------------------CATACATATTTTTATACCCGTTACTCG--------TAGACTAAAAGGGTATACTAGATT-CGTTGAA-------AAGTATGTAATAGGCAGAATTAGGCGTTTCCGACAATATAAGGTA-TACAT-ATATATTCTTGATCAGGATCAATAGCCGAGTCGAACTAACCATGTCCGTCTGTCC----------------GTATG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dmo_1668

scaffold_6500:27706962-27707112 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-32.0	-31.8	-31.8