ID:

dmo_1659

 Coordinate:

scaffold_6500:26747384-26747534 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-11.1 -10.9 -10.8 -10.7

Flybase annnotation

exon [dmoj_GLEANR_568:7]; CDS [Dmoj\GI20857-cds]; intron [Dmoj\GI20857-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AAATCGATCATATTTATATCTGGGATGGAATCCGGTGTATTTTTTGATATCTTATCTCGTAAGTCGGGAATTTTTTTGGGCAGCAAATCTATTCCATTAACTGATGTCACAGTCAATCGCAGAGCTTGGTAGGCTCAGGCTTTTCTTGCGTAATTTGTTATCCTGCAAGGCCTTTTTAATTGTTGCTTTAACTCTTCGCAGACATCATCGATGCCCACAAGAACCAGCAGCTATGCTCGCTGACCGGCGTC
******************************************************.((...((((..(((((...((((.....))))...)))))............................))))...))*********************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V110
male body		 M046
female body
 V056
head
 V049
head
......................................................TCTCGTAAGTCGGGAATTTTTTTGGGC.......................................................................................................................................................................... 27 0 1 452.00 452 447 4 0 1
.........................................................................................................GTCACAGTCAATCGCAGAGCTTGGTAG....................................................................................................................... 27 0 1 158.00 158 157 0 1 0
.............................................................................................................................TTGGTAGGCTCAGGCTTTTCTTGCGT.................................................................................................... 26 0 1 96.00 96 94 1 1 0
........................................................................................................TGTCACAGTCAATCGCAGAGCTTGG.......................................................................................................................... 25 0 1 93.00 93 92 1 0 0
.........................................................................................................GTCACAGTCAATCGCAGAGCTTGGTA........................................................................................................................ 26 0 1 84.00 84 83 0 1 0
..........................................................................................................TCACAGTCAATCGCAGAGCTTGGTAG....................................................................................................................... 26 0 1 69.00 69 67 2 0 0
........................................................TCGTAAGTCGGGAATTTTTTTGGGC.......................................................................................................................................................................... 25 0 1 63.00 63 62 0 1 0
.................................................................................................TAACTGATGTCACAGTCAATCGCAGAGC.............................................................................................................................. 28 0 1 60.00 60 59 0 1 0
...........................................TTGATATCTTATCTCGTAAGTCGGGAAT.................................................................................................................................................................................... 28 0 1 55.00 55 53 2 0 0
..........................................................................................................TCACAGTCAATCGCAGAGCTTGGTAGG...................................................................................................................... 27 0 1 50.00 50 49 1 0 0
......................................................TCTCGTAAGTCGGGAATTTTTTTGGG........................................................................................................................................................................... 26 0 1 46.00 46 44 2 0 0
.................................................................................................TAACTGATGTCACAGTCAATCGCAGAG............................................................................................................................... 27 0 1 46.00 46 46 0 0 0
.........................................................................................................GTCACAGTCAATCGCAGAGCTTGGTAGG...................................................................................................................... 28 0 1 43.00 43 43 0 0 0
.........................................................................................................GTCACAGTCAATCGCAGAGCTTGGT......................................................................................................................... 25 0 1 35.00 35 35 0 0 0
.........................................................................................................GTCACAGTCAATCGCAGAGCTTGG.......................................................................................................................... 24 0 1 32.00 32 32 0 0 0
........................................................................................................TGTCACAGTCAATCGCAGAGCTTG........................................................................................................................... 24 0 1 29.00 29 28 1 0 0
..........................................TTTGATATCTTATCTCGTAAGTCGGGAAT.................................................................................................................................................................................... 29 0 1 25.00 25 25 0 0 0
.........................TGGAATCCGGTGTATTTTTTGATATC........................................................................................................................................................................................................ 26 0 1 24.00 24 24 0 0 0
..........................................TTTGATATCTTATCTCGTAAGTCGGG....................................................................................................................................................................................... 26 0 1 22.00 22 20 2 0 0
..........................................................................................................TCACAGTCAATCGCAGAGCTTGGTA........................................................................................................................ 25 0 1 20.00 20 20 0 0 0
........................................................................................................TGTCACAGTCAATCGCAGAGCTTGGTAG....................................................................................................................... 28 0 1 20.00 20 20 0 0 0
........................................................................................................TGTCACAGTCAATCGCAGAGCTTGGTA........................................................................................................................ 27 0 1 19.00 19 18 1 0 0
...........................................................................................................CACAGTCAATCGCAGAGCTTGGTAGG...................................................................................................................... 26 0 1 18.00 18 17 1 0 0
...............................................................................................................................................................................................................TCGATGCCCACAAGAACCAGCAGCTA.................. 26 0 1 18.00 18 18 0 0 0
...............................................................................................................GTCAATCGCAGAGCTTGGTAGGCTCAGG................................................................................................................ 28 0 1 17.00 17 17 0 0 0
.......................................................CTCGTAAGTCGGGAATTTTTTTGGGC.......................................................................................................................................................................... 26 0 1 17.00 17 16 1 0 0
.............................................................................................................................TTGGTAGGCTCAGGCTTTTCTTGCGTC................................................................................................... 27 1 1 17.00 17 17 0 0 0
................................................................................................TTAACTGATGTCACAGTCAATCGCAGAG............................................................................................................................... 28 0 1 17.00 17 17 0 0 0
........................................................................................................TGTCACAGTCAATCGCAGAGCTTGGT......................................................................................................................... 26 0 1 16.00 16 16 0 0 0
....................................................................................................CTGATGTCACAGTCAATCGCAGAGC.............................................................................................................................. 25 0 1 15.00 15 14 1 0 0
.............................................................................................................................TTGGTAGGCTCAGGCTTTTCTTGCGTAA.................................................................................................. 28 0 1 14.00 14 14 0 0 0
.....................................................................................................TGATGTCACAGTCAATCGCAGAGC.............................................................................................................................. 24 0 1 14.00 14 13 1 0 0
..............................................................................................................................................................................................................ATCGATGCCCACAAGAACCAGCAGCT................... 26 0 1 13.00 13 13 0 0 0
..........................................TTTGATATCTTATCTCGTAAGTCGG........................................................................................................................................................................................ 25 0 1 12.00 12 12 0 0 0
...............................................................................................................GTCAATCGCAGAGCTTGGTAGGCT.................................................................................................................... 24 0 1 11.00 11 11 0 0 0
.............................................................................................................................TTGGTAGGCTCAGGCTTTTCTTGCGTA................................................................................................... 27 0 1 11.00 11 11 0 0 0
.......................................................................TTTTTTGGGCAGCAAATCTATTCCAT.......................................................................................................................................................... 26 0 1 10.00 10 9 1 0 0
...............................................................................................................................................................................................................TCGATGCCCACAAGAACCAGCAGCT................... 25 0 1 10.00 10 10 0 0 0
......................................................TCTCGTAAGTCGGGAATTTTTTTTGGGC......................................................................................................................................................................... 28 3 1 10.00 10 10 0 0 0
...TCGATCATATTTATATCTGGGATGGAA............................................................................................................................................................................................................................. 27 0 1 10.00 10 10 0 0 0
.........................................................................................................GTCACAGTCAATCGCAGAGCTTG........................................................................................................................... 23 0 1 10.00 10 10 0 0 0
..........................................................................................................TCACAGTCAATCGCAGAGCTTGG.......................................................................................................................... 23 0 1 10.00 10 10 0 0 0
.....................................................................................................TGATGTCACAGTCAATCGCAGAGCTTG........................................................................................................................... 27 0 1 10.00 10 9 1 0 0
...TCGATCATATTTATATCTGGGATGG............................................................................................................................................................................................................................... 25 0 1 9.00 9 9 0 0 0
..............................................................................................................................TGGTAGGCTCAGGCTTTTCTTGCGT.................................................................................................... 25 0 1 9.00 9 9 0 0 0
...........................................TTGATATCTTATCTCGTAAGTCGGG....................................................................................................................................................................................... 25 0 1 9.00 9 9 0 0 0
...............................................................................................................GTCAATCGCAGAGCTTGGTAGGC..................................................................................................................... 23 0 1 9.00 9 9 0 0 0
............................................TGATATCTTATCTCGTAAGTCGGGAAT.................................................................................................................................................................................... 27 0 1 8.00 8 8 0 0 0
........................................TTTTTGATATCTTATCTCGTAAGTCG......................................................................................................................................................................................... 26 0 1 8.00 8 6 2 0 0
..................................................................................................AACTGATGTCACAGTCAATCGCAGAGC.............................................................................................................................. 27 0 1 8.00 8 8 0 0 0
....................................................................................................................TCGCAGAGCTTGGTAGGCTCAGGC............................................................................................................... 24 0 1 8.00 8 7 1 0 0
............TTTATATCTGGGATGGAATCCGGTG...................................................................................................................................................................................................................... 25 0 1 7.00 7 6 1 0 0
...........................................TTGATATCTTATCTCGTAAGTCGG........................................................................................................................................................................................ 24 0 1 7.00 7 7 0 0 0
................................................................................................................TCAATCGCAGAGCTTGGTAGGCTCAGGC............................................................................................................... 28 0 1 7.00 7 7 0 0 0
...............................................................TCGGGAATTTTTTTGGGCAGCAAATC.................................................................................................................................................................. 26 0 1 7.00 7 7 0 0 0
...................................................................................................................ATCGCAGAGCTTGGTAGGCTCAGGC............................................................................................................... 25 0 1 6.00 6 5 1 0 0
...............................................................................................................GTCAATCGCAGAGCTTGGTAGGCTC................................................................................................................... 25 0 1 6.00 6 6 0 0 0
...................................................................................................ACTGATGTCACAGTCAATCGCAGAGC.............................................................................................................................. 26 0 1 6.00 6 6 0 0 0
....................................................................................................CTGATGTCACAGTCAATCGCAGAG............................................................................................................................... 24 0 1 6.00 6 6 0 0 0
..................................................................................................AACTGATGTCACAGTCAATCGCAGAG............................................................................................................................... 26 0 1 6.00 6 5 1 0 0
.....................................................ATCTCGTAAGTCGGGAATTTTTTTGGGC.......................................................................................................................................................................... 28 0 1 5.00 5 5 0 0 0
........................................................................................................TGTCACAGTCAATCGCAGAGCTTGGTC........................................................................................................................ 27 1 1 5.00 5 5 0 0 0
..........................................TTTGATATCTTATCTCGTAAGTCGGGAA..................................................................................................................................................................................... 28 0 1 5.00 5 4 1 0 0
............................................................................................................................................................................................................TCATCGATGCCCACAAGAACCAGCAGC.................... 27 0 1 5.00 5 5 0 0 0
.............................................................................................................................TTGGTAGGCTCAGGCTTTTCTTGCG..................................................................................................... 25 0 1 5.00 5 4 1 0 0
...........................................TTGATATCTTATCTCGTAAGTCGGGA...................................................................................................................................................................................... 26 0 1 5.00 5 4 1 0 0
........................................................TCGTAAGTCGGGAATTTTTTTGGG........................................................................................................................................................................... 24 0 1 5.00 5 5 0 0 0
...........................................................................................................CACAGTCAATCGCAGAGCTTGGTAG....................................................................................................................... 25 0 1 5.00 5 5 0 0 0
..........................................................................................................TCACAGTCAATCGCAGAGCTTGGT......................................................................................................................... 24 0 1 5.00 5 5 0 0 0
.......................................................................................................................................................................................TGCTTTAACTCTTCGCAGACATCATCGA........................................ 28 0 1 5.00 5 5 0 0 0
...............................................................................................................GTCAATCGCAGAGCTTGG.......................................................................................................................... 18 0 1 5.00 5 5 0 0 0
..............................................................................................................................................................................................................ATCGATGCCCACAAGAACCAGCAGC.................... 25 0 1 4.00 4 3 1 0 0
............TTTATATCTGGGATGGAATCCGGTGT..................................................................................................................................................................................................................... 26 0 1 4.00 4 4 0 0 0
...TCGATCATATTTATATCTGGGATGGA.............................................................................................................................................................................................................................. 26 0 1 4.00 4 4 0 0 0
...........................................................TAAGTCGGGAATTTTTTTGGGC.......................................................................................................................................................................... 22 0 1 4.00 4 4 0 0 0
.......................................................................................................ATGTCACAGTCAATCGCAGAGCTTGG.......................................................................................................................... 26 0 1 4.00 4 4 0 0 0
..............................................................................................................................TGGTAGGCTCAGGCTTTTCTTGCGTC................................................................................................... 26 1 1 4.00 4 4 0 0 0
...............................................................................................................................GGTAGGCTCAGGCTTTTCTTGCGT.................................................................................................... 24 0 1 4.00 4 4 0 0 0
........................ATGGAATCCGGTGTATTTTTTGATATC........................................................................................................................................................................................................ 27 0 1 4.00 4 4 0 0 0
....................................................TATCTCGTAAGTCGGGAATTTTTTTGGGC.......................................................................................................................................................................... 29 0 1 4.00 4 4 0 0 0
...........................................................................................................................................................................................................ATCATCGATGCCCACAAGAACCAGC....................... 25 0 1 4.00 4 3 1 0 0
.........................TGGAATCCGGTGTATTTTTTGATA.......................................................................................................................................................................................................... 24 0 1 3.00 3 3 0 0 0
.....................................................................................................................................CTCAGGCTTTTCTTGCGTAATTTGT............................................................................................. 25 0 1 3.00 3 3 0 0 0
.......................................................................................................................................................................................TGCTTTAACTCTTCGCAGACATCATCG......................................... 27 0 1 3.00 3 2 1 0 0
.....................................................................................................TGATGTCACAGTCAATCGCAGAGCTT............................................................................................................................ 26 0 1 3.00 3 3 0 0 0
...........................................................................................................................................................................................................ATCATCGATGCCCACAAGAACCAGCA...................... 26 0 1 3.00 3 2 1 0 0
............TTTATATCTGGGATGGAATCCGG........................................................................................................................................................................................................................ 23 0 1 3.00 3 3 0 0 0
.....................................................................................................TGATGTCACAGTCAATCGCAGAGCT............................................................................................................................. 25 0 1 3.00 3 2 1 0 0
........................................................TCGTAAGTCGGGAATTTTTTTGGGCAGC....................................................................................................................................................................... 28 0 1 3.00 3 3 0 0 0
....................................................................................................................................................................................TGTTGCTTTAACTCTTCGCAGACATC............................................. 26 0 1 3.00 3 0 3 0 0
.................................................................................................................................TAGGCTCAGGCTTTTCTTGCGTAATT................................................................................................ 26 0 1 3.00 3 3 0 0 0
....................................................................................................................TCGCAGAGCTTGGTAGGCTCAGGCTC............................................................................................................. 26 1 1 3.00 3 3 0 0 0
...........................................TTGATATCTTATCTCGTAAGTCGGGAA..................................................................................................................................................................................... 27 0 1 3.00 3 3 0 0 0
.......................................................................................TCTATTCCATTAACTGATGTCACAGTCA........................................................................................................................................ 28 0 1 3.00 3 1 2 0 0
............TTTATATCTGGGATGGAATCCGGTGTA.................................................................................................................................................................................................................... 27 0 1 3.00 3 3 0 0 0
.....................................................................................................................................................................................................................CCCACAAGAACCAGCAGCTATGCTCGC........... 27 0 1 3.00 3 2 1 0 0
.......................................................................TTTTTTGGGCAGCAAATCTATTCCA........................................................................................................................................................... 25 0 1 3.00 3 3 0 0 0
......................................................TCTCGTAAGTCGGGAATTTTTTGGGC........................................................................................................................................................................... 26 2 1 3.00 3 3 0 0 0
...........................................................................................................................................................................................................ATCATCGATGCCCACAAGAACCAGCAGC.................... 28 0 1 3.00 3 3 0 0 0
.....................................................................................................TGATGTCACAGTCAATCGCAGAGCTTGG.......................................................................................................................... 28 0 1 3.00 3 3 0 0 0
........................................................................................................TGTCACAGTCAATCGCAGAGCTT............................................................................................................................ 23 0 1 3.00 3 3 0 0 0
.......................................................................................TCTATTCCATTAACTGATGTCACAG........................................................................................................................................... 25 0 1 3.00 3 3 0 0 0
............................................................................................................................................................................................................TCATCGATGCCCACAAGAACCAGCAGCT................... 28 0 1 3.00 3 3 0 0 0
..............................................................................................................................................................TATCCTGCAAGGCCTTTTTAATTGTT................................................................... 26 0 1 2.00 2 1 1 0 0
......................................................TCTCGTAAGTCGGGAATTTTTTTGGCC.......................................................................................................................................................................... 27 1 1 2.00 2 2 0 0 0
........................................................TCGTAAGTCGGGAATTTTTTTTGGGC......................................................................................................................................................................... 26 3 1 2.00 2 2 0 0 0
........................................................................................................TGTCACAGTCAATCGCAGAGCTTGGC......................................................................................................................... 26 1 1 2.00 2 2 0 0 0
....................TGGGATGGAATCCGGTGTATTTTTTGAT........................................................................................................................................................................................................... 28 0 1 2.00 2 2 0 0 0
......................................................................................................................................................................................TTGCTTTAACTCTTCGCAGACATCA............................................ 25 0 1 2.00 2 1 1 0 0
......................................................TCTTGTAAGTCGGGAATTTTTTTGGGC.......................................................................................................................................................................... 27 1 1 2.00 2 2 0 0 0
......................................................................................................................................TCAGGCTTTTCTTGCGTAATTTGT............................................................................................. 24 0 1 2.00 2 2 0 0 0
.......................................................................................TCTATTCCATTAACTGATGTCACAGT.......................................................................................................................................... 26 0 1 2.00 2 1 1 0 0
......................................................................................................GATGTCACAGTCAATCGCAGAGCTTG........................................................................................................................... 26 0 1 2.00 2 2 0 0 0
...............................................................................................................................................................................................................TCGATGCCCACAAGAACCAGCAGCTAT................. 27 0 1 2.00 2 1 1 0 0
.....................................................................................................................................................................................................................................GCTATGCTCGCTGACCGGCGTC 22 0 1 2.00 2 2 0 0 0
........................................................................................................................................................................................GCTTTAACTCTTCGCAGACATCATCG......................................... 26 0 1 2.00 2 2 0 0 0
.........................................TTTTGATATCTTATCTCGTAAGTCG......................................................................................................................................................................................... 25 0 1 2.00 2 1 1 0 0
..........................................................................................................................................................................................TTTAACTCTTCGCAGACATCATCGAT....................................... 26 0 1 2.00 2 2 0 0 0
........................ATGGAATCCGGTGTATTTTTTGATA.......................................................................................................................................................................................................... 25 0 1 2.00 2 2 0 0 0
.................................................................................................................................TAGGCTCAGGCTTTTCTTGCGTAATTTG.............................................................................................. 28 0 1 2.00 2 2 0 0 0
...............................................................................................................GTCAATCGCAGAGCTTGGTAGGCTCAG................................................................................................................. 27 0 1 2.00 2 2 0 0 0
..............................................................................................................................................................TATCCTGCAAGGCCTTTTTAATTGT.................................................................... 25 0 1 2.00 2 2 0 0 0
.................................................................................................................................................TTGCGTAATTTGTTATCCTGCAAGG................................................................................. 25 0 1 2.00 2 2 0 0 0
............................................................................................................................................................................................................TCATCGATGCCCACAAGAACCAGCA...................... 25 0 1 2.00 2 2 0 0 0
......................................................................................................................................................................................TTGCTTTAACTCTTCGCAGACATCATCGA........................................ 29 0 1 2.00 2 0 2 0 0
........................................................TCGTAAGTCGGGAATTTTTTTGG............................................................................................................................................................................ 23 0 1 2.00 2 2 0 0 0
............................................................................................................ACAGTCAATCGCAGAGCTTGGTAGGC..................................................................................................................... 26 0 1 2.00 2 2 0 0 0
........................................TTTTTGATATCTTATCTCGTAAGTCGG........................................................................................................................................................................................ 27 0 1 2.00 2 2 0 0 0
..ATCGATCATATTTATATCTGGGATGGAA............................................................................................................................................................................................................................. 28 0 1 2.00 2 2 0 0 0
...........................................................................................................................................................TGTTATCCTGCAAGGCCTTTTTAATTG..................................................................... 27 0 1 2.00 2 2 0 0 0
........................................................................................................TGTCACAGTCAATCGCAGAGCTTGGTAT....................................................................................................................... 28 1 1 2.00 2 2 0 0 0
...........................................................................................................................................................................................TTAACTCTTCGCAGACATCATCGAT....................................... 25 0 1 2.00 2 1 1 0 0
..................................................................................................................................................TGCGTAATTTGTTATCCTGCAAGGCC............................................................................... 26 0 1 2.00 2 1 1 0 0
.........................................................................................................................................................TTTGTTATCCTGCAAGGCCTTTTTA......................................................................... 25 0 1 2.00 2 0 2 0 0
.........................................................................................TATTCCATTAACTGATGTCACAGTCAAT...................................................................................................................................... 28 0 1 2.00 2 0 2 0 0
......................................................TCTAGTAAGTCGGGAATTTTTTTGGGC.......................................................................................................................................................................... 27 1 1 2.00 2 2 0 0 0
............................................................................TGGGCAGCAAATCTATTCCATTAACTGA................................................................................................................................................... 28 0 1 2.00 2 1 1 0 0
.......TCATATTTATATCTGGGATGGAATCCG......................................................................................................................................................................................................................... 27 0 1 2.00 2 1 1 0 0
...........................................................................................................CACAGTCAATCGCAGAGCTTGGTA........................................................................................................................ 24 0 1 2.00 2 1 1 0 0
..........................................TTTGATATCTTATCTCGTAAGTCGGGA...................................................................................................................................................................................... 27 0 1 2.00 2 2 0 0 0
.............TTATATCTGGGATGGAATCCGGTGT..................................................................................................................................................................................................................... 25 0 1 2.00 2 2 0 0 0
....................................................................................................CTGATGTCACAGTCAATCGCAGAGCT............................................................................................................................. 26 0 1 2.00 2 2 0 0 0
..............................TCCGGTGTATTTTTTGATATCTTATC................................................................................................................................................................................................... 26 0 1 2.00 2 2 0 0 0
...............................................................................................................GTCAATCGCAGAGCTTGGTAGG...................................................................................................................... 22 0 1 2.00 2 2 0 0 0
....................................................................................................CTGATGTCACAGTCAATCGCAGAGCTT............................................................................................................................ 27 0 1 2.00 2 2 0 0 0
..............................................................................................................................................................................................................ATCGATGCCCACAAGAACCAGCAGCTA.................. 27 0 1 2.00 2 2 0 0 0
........................................................................................................TGTCACAGTCAATCGCAGAGCTTGGTAA....................................................................................................................... 28 1 1 2.00 2 2 0 0 0
................................................................................................................TCAATCGCAGAGCTTGGTAGGCTCAGG................................................................................................................ 27 0 1 2.00 2 2 0 0 0
...............................................................................................................GTCAATCGCAGAGCTTGGTAGGCTCAGGC............................................................................................................... 29 0 1 2.00 2 2 0 0 0
............................................................................................................................................................................................................TCATCGATGCCCACAAGAACCAGCAG..................... 26 0 1 1.00 1 1 0 0 0
......................................................TCGCGTAAGTCGGGAATTTTTTTGTGC.......................................................................................................................................................................... 27 2 1 1.00 1 0 0 1 0
............TTTATATCTGGGATGGAATCCGGT....................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0
.........................................................................................................GTCACAGTCAATCGCAGAGCTTGA.......................................................................................................................... 24 1 1 1.00 1 1 0 0 0
.........................................................................................................GTCACAGTCAATCGCAGAGCTT............................................................................................................................ 22 0 1 1.00 1 1 0 0 0
.......................................................CTCGTAAGTCGGGAATTTTTTTGGG........................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0
........CATATTTATATCTGGGATGGAATC........................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0
......................................................TCTCGTAAGTCTGGAATTTTTTTGGGCAG........................................................................................................................................................................ 29 1 1 1.00 1 1 0 0 0
.........................TGGAATCCGGTGTATTTTTTGATATCT....................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0
.................................................................................................................................TAGGCTCAGGCTTTTCTTGCGTAAT................................................................................................. 25 0 1 1.00 1 1 0 0 0
...........ATTTATATCTGGGATGGAATCCGGTG...................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0
............TTTATATCTGGGATTGAATCCGGT....................................................................................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0
.........................................................................................................GTCACAGTTAATCGCAGAGCTTGGTAT....................................................................................................................... 27 2 1 1.00 1 1 0 0 0
......................................................................TTTTTTTGGGCAGCAAATCTATTCCA........................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0
...................................TGTATTTTTTGATATCTTATCTCGTAA............................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0
.........................................................................................................GTCACAGTCAATCGCATAGCTTGACA........................................................................................................................ 26 3 1 1.00 1 1 0 0 0
..................................................................................................................................................TGCGTAATTTGTTATCCTGCAAGGC................................................................................ 25 0 1 1.00 1 1 0 0 0
...TCGATCATATTTATATCTGTGATGGAA............................................................................................................................................................................................................................. 27 1 1 1.00 1 1 0 0 0
...........................................................................................................................................................................................TTAACTCTTCGCAGACATCA............................................ 20 0 1 1.00 1 1 0 0 0
...................CTGGGATGGAATCCGGTGTATTTTTC.............................................................................................................................................................................................................. 26 1 1 1.00 1 1 0 0 0
............................................................................................................................................................................................................TCATCGATGCCCACAAGAACCAG........................ 23 0 1 1.00 1 0 1 0 0
.........................................................................................................GTCACAGTCAATCGCAGAGCTTTGTA........................................................................................................................ 26 1 1 1.00 1 1 0 0 0
........................................................................................................TGTCACAGTCAATCGCAGACCTTGG.......................................................................................................................... 25 1 1 1.00 1 1 0 0 0
................................................................................................................................................................................................TCTTCGCAGACATCATCGATGCCTACAA............................... 28 1 1 1.00 1 0 1 0 0
..............................................................................................................................................................TACCCTTCAAGGCCTTTTTAATTGTTGC................................................................. 28 2 1 1.00 1 0 1 0 0
............................................................................................................ACAGTCAATCGCAGAGCTTGGTA........................................................................................................................ 23 0 1 1.00 1 1 0 0 0
.................................................................................AGCAAATCTATTCCATTAACTGATGTCA.............................................................................................................................................. 28 0 1 1.00 1 1 0 0 0
.......................................TCCTTTGATATCTTATCTCGTAAGTCGGG....................................................................................................................................................................................... 29 2 1 1.00 1 0 1 0 0
..ATCGATCATATTTATATCTGGGATGG............................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0
........................................................................................................TGTCACAGTCAATCGCAGAGCTTGTTAG....................................................................................................................... 28 1 1 1.00 1 1 0 0 0
...............................................................................................................................................................................TTAATTGTTGCTTTAACTCTTCGCA................................................... 25 0 1 1.00 1 0 1 0 0
...................................................................................................................ATCGCAGAGCTTGGTAGGCTCAGGCTTT............................................................................................................ 28 0 1 1.00 1 1 0 0 0
.................................................................................................TAACTGATGTCACAGTCAATCGCAG................................................................................................................................. 25 0 1 1.00 1 1 0 0 0
.........................................................................................................GTCACAGTCAATCGCAGAGCTTGGTTGG...................................................................................................................... 28 1 1 1.00 1 1 0 0 0
.....................................................................................................................CGCAGAGCTTGGTAGGCTCAGGCTT............................................................................................................. 25 0 1 1.00 1 0 1 0 0
...................................................................................................................ATCGCAGAGCTTGGTAGGCTCAGG................................................................................................................ 24 0 1 1.00 1 1 0 0 0
...............................................................................................................GTCAATCTCAGAGCTTGGTAGGCT.................................................................................................................... 24 1 1 1.00 1 1 0 0 0
............................................................................................................................................................................................TAACTCTTCGCAGACATCATCGATC...................................... 25 1 1 1.00 1 1 0 0 0
......................................................TCTCGTAAGTCAGGAATTTTTTTGGGC.......................................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0
........................................................TCGTAAGTCGGGAATTTTTTTGGGCA......................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0
........................................................................................................TGTCACAGTCAATCGCTGAGCTTGGT......................................................................................................................... 26 1 1 1.00 1 1 0 0 0
........................................................................................................TCTCACAGTCAATCGCAGAGCTTGG.......................................................................................................................... 25 1 1 1.00 1 1 0 0 0
............................................................................................................ACAGTCAATCGCAGAGCTTGGTAG....................................................................................................................... 24 0 1 1.00 1 1 0 0 0
..........................................TTTGATATCTTATATCGTAAGGCAG........................................................................................................................................................................................ 25 3 1 1.00 1 0 0 1 0
.............................................................................................................................................................................TTTTAATTGTTGCTTTAACTCTTCG..................................................... 25 0 1 1.00 1 1 0 0 0
......................................................TCTCGTAAGTCGGGAATTTTTTTTGGG.......................................................................................................................................................................... 27 2 1 1.00 1 1 0 0 0
.............................................................................................................................TTGGTAGGCTAAGGCTTTTCTTGCGT.................................................................................................... 26 1 1 1.00 1 1 0 0 0
.........................................................................................................GTCACAGTCAATCGCAGAGCTTGGTCG....................................................................................................................... 27 1 1 1.00 1 1 0 0 0
........................................................................................................................................................................................GCTTTAACTCTTCGCACACAGCATC.......................................... 25 2 1 1.00 1 0 0 1 0
.........................................................................................................GTCACAGTCAATCGCAGAGCTTCGTAG....................................................................................................................... 27 1 1 1.00 1 1 0 0 0
...............................................................................................................................GGTAGGCTCAGGCTTTTCTTGCGTAA.................................................................................................. 26 0 1 1.00 1 1 0 0 0
..........................................TTTGATATCTTATCTCGTAAGTCGGCTA..................................................................................................................................................................................... 28 2 1 1.00 1 0 0 1 0
............................................................................................................................................................................................................TCATCGATGCCCACAAGAACCAGCAGCTA.................. 29 0 1 1.00 1 0 1 0 0
.........................................................................................................GTCACAGTCAATCGCAGAGCTTGGTAT....................................................................................................................... 27 1 1 1.00 1 1 0 0 0
......................................................TCCCGTAAGTCGGGAATTTTTTTGGGC.......................................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0
................................................................................................TTAACTGATGTCACAGTCAATCGCAGAGC.............................................................................................................................. 29 0 1 1.00 1 0 1 0 0
....CGATCATATTTATATCTGGGATGGAA............................................................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0
....................................................................................................CTGATGTCACAGTCAATCGCAGAGCTTG........................................................................................................................... 28 0 1 1.00 1 1 0 0 0
............................................................................TGGGCAGCAAATCTATTCCATTAACTG.................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0
........................................................................................................TGTCACAGTCAATCTCAGAGCTTGG.......................................................................................................................... 25 1 1 1.00 1 1 0 0 0
...............................................................................................................................................................................................................TCGATGCCCACAAGAACCAGCAGCTATA................ 28 1 1 1.00 1 1 0 0 0
..............................................................................................................................TGGTAGGCTCAGGCTTTTCTTGCGTAA.................................................................................................. 27 0 1 1.00 1 1 0 0 0
............................................................................................................ACAGTCAATCGCAGAGCTTGGTAGG...................................................................................................................... 25 0 1 1.00 1 1 0 0 0
..........................................................................................................................................................................................................................AAGAACCAGCAGCTATGCTCGCT.......... 23 0 1 1.00 1 1 0 0 0
.........................TGGAATCCGATGTATTTTTTGATATC........................................................................................................................................................................................................ 26 1 1 1.00 1 1 0 0 0
........................................................................TTTTTGGGCAGCAAATCTATTCCAT.......................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0
..........................................................................................................................................................................................TTTAACTCTTCGCAGACATCATCGA........................................ 25 0 1 1.00 1 1 0 0 0
............................................................................................................................................TTTTCTTGCGTAATTTGTTGTCCTGC..................................................................................... 26 1 1 1.00 1 1 0 0 0
..........................................TTTGATATCTTATCTCGTAAGTCG......................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0
......................................................................................................................GCAGAGCTTGGTAGGCTCAGGCTTTTC.......................................................................................................... 27 0 1 1.00 1 1 0 0 0
.........................................................................................................GTCACAGTCAATCTCAGAGCTTGGTA........................................................................................................................ 26 1 1 1.00 1 1 0 0 0
.............................................................................................................................TTGGTAGGCTCAGGCTTTTCTTTCGTA................................................................................................... 27 1 1 1.00 1 1 0 0 0
..............................TCCGGTGTATTTTTTGATATCTTATCTCG................................................................................................................................................................................................ 29 0 1 1.00 1 1 0 0 0
.......................................................................................................ATGTCACAGTCAATCGCAGAGCTTGAC......................................................................................................................... 27 2 1 1.00 1 1 0 0 0
..............................................................................................................................TGGTAGGCTCAGGCTTTTATTGCGT.................................................................................................... 25 1 1 1.00 1 1 0 0 0
...............................................................TCGGGAATTTTTTTGGGCAGCAAA.................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0
.................................................................................................TAACTGATGTCACAGTCAATCGCAGC................................................................................................................................ 26 1 1 1.00 1 1 0 0 0
........................................................................................................TGTCACAGTCAATCGCAGAGCTTGGA......................................................................................................................... 26 1 1 1.00 1 1 0 0 0
........................................................................................................TGTCACAGTCAATCTCAGAGCTTG........................................................................................................................... 24 1 1 1.00 1 1 0 0 0
..........................................TTTGATATCTTATATCGTAAGTCGGGA...................................................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0
.........................................................................................................GTCAGAGTCAATCGCAGAGCTTGGTAG....................................................................................................................... 27 1 1 1.00 1 1 0 0 0
.....................................................................................................TGATGTCACAGTCAATCGCAGAG............................................................................................................................... 23 0 1 1.00 1 1 0 0 0
.................................................................................................TAACTGATGTCACAGTAAATCGCAGAAC.............................................................................................................................. 28 2 1 1.00 1 0 0 0 1
.......................................................CTCGTAAGTCGGGAATTTTTTTGGTC.......................................................................................................................................................................... 26 1 1 1.00 1 1 0 0 0
............................................................................................................................................................................................TAACTCTTCGCAGACATCATCGATGCCC................................... 28 0 1 1.00 1 0 1 0 0
......................................................................................................................................................................................TTGCTTTAACTGTTCGCAGACATCATC.......................................... 27 1 1 1.00 1 0 1 0 0
............................................................................................................................................................................................................TCATCGATGCCCACAAGAACCGGCAGCT................... 28 1 1 1.00 1 1 0 0 0
........................................................TCGTAGGTCGGGAATTTTTTTGGGC.......................................................................................................................................................................... 25 1 1 1.00 1 1 0 0 0
..............................................................................................................................TCTTAGGCTCAGGCTTTTCTTGCGT.................................................................................................... 25 2 1 1.00 1 1 0 0 0
..............................................................................................................................................................................................................ATCGATGCCCACAAGAACCAGCAGCTC.................. 27 1 1 1.00 1 1 0 0 0
...................................................................................................ACTGATGTCACAGTCAATCGCAGAAC.............................................................................................................................. 26 1 1 1.00 1 1 0 0 0
..............TATATCTGGGATGGAATCCGGTGT..................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0
.............TTATATCTGGGATGGAATCCGGTG...................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0
........................................................................................................................................................................................................................ACAAGAACCAGCAGCTATGCTCGCT.......... 25 0 1 1.00 1 1 0 0 0
......................................................TCTCGTAAGTCGGGAATTTTTTTGGGCT......................................................................................................................................................................... 28 1 1 1.00 1 1 0 0 0
......................................................TATCGTAAGGCGGGAATTTTTTTGGG........................................................................................................................................................................... 26 2 1 1.00 1 1 0 0 0
.........................................................................TTTTGGGCAGCAAATCTATTCCATT......................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0
.........................................................................................................GTAACAGTCAATCGCAGAGCTTGGTA........................................................................................................................ 26 1 1 1.00 1 1 0 0 0
.......................................................................................................................................................................................TGCTTTAACTCTTCGCAGACATGATCGA........................................ 28 1 1 1.00 1 1 0 0 0
..........................................................................................................TCACAGTCAATCGCAGAGCCTGGTAGG...................................................................................................................... 27 1 1 1.00 1 1 0 0 0
........................................................TCGCAAGTCGGGAATTTTTTTGGGC.......................................................................................................................................................................... 25 1 1 1.00 1 1 0 0 0
.......................................................CTCGTAAGTCGGGAATTTTTTTTGGGC......................................................................................................................................................................... 27 3 1 1.00 1 1 0 0 0
..................................................................................................................AATCGCAGAGCTTGGTAGGCTCAGG................................................................................................................ 25 0 1 1.00 1 1 0 0 0
.............................................................................................................CAGTCAATCGCAGAGCTTGGTAGGCT.................................................................................................................... 26 0 1 1.00 1 1 0 0 0
......................................................................................................GATGTCACAGTCAATCGCAGAGC.............................................................................................................................. 23 0 1 1.00 1 1 0 0 0
..........................................................................................................TCACAGTCAATCGCAGAGCTTGTTAGG...................................................................................................................... 27 1 1 1.00 1 1 0 0 0
........................................................TCGTAAGTCGGGAATTTTTTTGGGCAG........................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0
...........................................................................................................................................................TGTTATCCTGCAAGGCCTTTTTAATC...................................................................... 26 1 1 1.00 1 0 1 0 0
......................................................TCTCGAAAGTCGGGAATTTTTTTGGGC.......................................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0
...................CTGGGATGGAATCCGGTGTATTTTTTC............................................................................................................................................................................................................. 27 1 1 1.00 1 1 0 0 0
......................................................TCTCGTAAGTCGGGAATTTTTTTCTGC.......................................................................................................................................................................... 27 2 1 1.00 1 1 0 0 0
...........................................................................TTGGGCAGCAAATCTATTCCATTAACTG.................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0
...................CTGGGATGGAATCCGGTGTATTTTTTGA............................................................................................................................................................................................................ 28 0 1 1.00 1 1 0 0 0
...................................................................................................................................................................................TTGTTGCTTTAACTCTTCGCAGACATC............................................. 27 0 1 1.00 1 1 0 0 0
..............................................................................................................................TGGTAGGCTCAGGCTTTTCTTGCGTA................................................................................................... 26 0 1 1.00 1 1 0 0 0
.................................................................................................TAACTGATGTAACAGTCAATCGCAGAG............................................................................................................................... 27 1 1 1.00 1 1 0 0 0
......................................................TCTCGTAAGTAGGGAATTTTTTTGGGC.......................................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0
....................................................................................................................TCGCAGAGCTTGGTAGGCTCAGG................................................................................................................ 23 0 1 1.00 1 1 0 0 0
.........................................TTTTGATATCTTATCTCGTAAGTCGG........................................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0
.........................................................................................................................................................TTTGTTATCCTGCAAGGCCTTT............................................................................ 22 0 1 1.00 1 0 1 0 0
..............TATATCTGGGATGGAATCCGG........................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0
................................................................................................................TCAATCGCAGAGCTTGGTAGGCTCA.................................................................................................................. 25 0 1 1.00 1 1 0 0 0
.............................................................................................................CAGTCAATCGCAGAGCTTGGTAG....................................................................................................................... 23 0 1 1.00 1 1 0 0 0
...................................................................................................ACTGATGTCACAGTCAATCGCAGAGCTT............................................................................................................................ 28 0 1 1.00 1 1 0 0 0
........................................................................................................................................................................................GCTTTAACTCTTCGCAGACATCATCGA........................................ 27 0 1 1.00 1 1 0 0 0
...................................................................................................................................................................................TTGTTGCTTTAACTCTTCGCAGACA............................................... 25 0 1 1.00 1 0 1 0 0
...................................................................................................................................................................................................................TGCCCACAAGAACCAGCAGCTATGCTC............. 27 0 1 1.00 1 0 1 0 0
..............................................................................................................................TGGTAGGCTCAGGCTTTTCTTGC...................................................................................................... 23 0 1 1.00 1 1 0 0 0
.AATCGATCATATTTATATCTGGGATG................................................................................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0
...............................................................................................................................................................................................................TCGATGCCCACAAGAACCAGCATCTA.................. 26 1 1 1.00 1 1 0 0 0
..........................................................................................................TCACAGTCAATCGCGGAGCTTGGTAGG...................................................................................................................... 27 1 1 1.00 1 1 0 0 0
...........................................................................................................................................CTTTTCTTGCGTAATTTGTTATCCTG...................................................................................... 26 0 1 1.00 1 0 1 0 0
....................................................................................................CTGATGTCACAGTCAATCGCAGATC.............................................................................................................................. 25 1 1 1.00 1 1 0 0 0
.........................................................................................................GTCGCAGTCAATCGCAGAGCTTGGTAG....................................................................................................................... 27 1 1 1.00 1 1 0 0 0
..............................................................................................................AGTCAATCGCAGAGCTTGGTAGG...................................................................................................................... 23 0 1 1.00 1 1 0 0 0
............................................................................................................................................................................................TAACTCTTCGCAGACATCATCGAT....................................... 24 0 1 1.00 1 1 0 0 0
......................................................................TTTTTTTGGGCAGCAAATC.................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0
..........................................TTTGATATCTTATCTCGTAAGTCTG........................................................................................................................................................................................ 25 1 1 1.00 1 1 0 0 0
..........................................................................................................................................................................................TTTAACTCTTCGCAGACATCATCG......................................... 24 0 1 1.00 1 1 0 0 0
.........................................................................................................GTCACAGTCAATCGCAGAGATTGGTA........................................................................................................................ 26 1 1 1.00 1 1 0 0 0
...................................................................................................................................................GCGTAATTTGTTATCCTGCAAGGCCT.............................................................................. 26 0 1 1.00 1 0 1 0 0
......................................................TCTCGTAAGTCGGGAACTTTTTTGGGC.......................................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0
..........................................................................................................TCACAGTCAATCACAGAGCTTGGTAG....................................................................................................................... 26 1 1 1.00 1 1 0 0 0
..............................................................................................................................................................................................................ATCGATGCCCACAAGAACCAGCAGCTATG................ 29 0 1 1.00 1 1 0 0 0
........................................................................................................TGTCACAGTCAATCGCAGCGCTTGG.......................................................................................................................... 25 1 1 1.00 1 1 0 0 0
..................................................................................................................AATCGCAGAGCTTGGTAGGCTCAGGCTC............................................................................................................. 28 1 1 1.00 1 1 0 0 0
.................................................................................................................................TAGGCTCAGGCTTTTCTTGCGTAA.................................................................................................. 24 0 1 1.00 1 1 0 0 0
........................................................TCGTAAGTCGGGAATTTTTTGGGCA.......................................................................................................................................................................... 25 3 1 1.00 1 1 0 0 0
...........................................................................................TTCCATTAACTGATGTCACAGTCAA....................................................................................................................................... 25 0 1 1.00 1 0 1 0 0
.........................TGGAATCCGGTATATTTTTTGATATC........................................................................................................................................................................................................ 26 1 1 1.00 1 1 0 0 0
............................................................................................................ACAGTCAATCGAAGAGCTTGGTAGGC..................................................................................................................... 26 1 1 1.00 1 1 0 0 0
.........................TGGAATCCGGTGTATTTTTTGATAT......................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0

Anti-sense strand reads

TTTAGCTAGTATAAATATAGACCCTACCTTAGGCCACATAAAAAACTATAGAATAGAGCATTCAGCCCTTAAAAAAACCCGTCGTTTAGATAAGGTAATTGACTACAGTGTCAGTTAGCGTCTCGAACCATCCGAGTCCGAAAAGAACGCATTAAACAATAGGACGTTCCGGAAAAATTAACAACGAAATTGAGAAGCGTCTGTAGTAGCTACGGGTGTTCTTGGTCGTCGATACGAGCGACTGGCCGCAG
***********************************************************************************************************************.((...((((..(((((...((((.....))))...)))))............................))))...))****************************************************** 		Read size # Mismatch Hit Count Total Norm Total V110
male body		 M046
female body
 M060
embryo
........................................................................................................................................................................................CGAAATTGAGAAGCGTCTGTA.............................................. 21 0 1 1.00 1 1 0 0
.............................................................................................................................................................................CAAATTAACAGCGAAATTG........................................................... 19 2 7 0.14 1 0 1 0
.....................CCCTACCCTAGTCCACAAA................................................................................................................................................................................................................... 19 3 10 0.10 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6500:26747334-26747584 - dmo_1659 AA--ATCGATCATATTTATATCTGGGATGGAATCCGGTGTATTTTTTGATATCTTATCTCGTAAGTCGGGAATTTTTTTGGGCAGCAAATCTATTCCATTAACTGATGTCACAGTCAATCGCAGAGCTTGGTAGGCTCAGGCTTTTCTTGCGTAATTTGTTATCCTGCAAGGCCTTTTTAATTGTTGCTT--------------------------------------TAACTCTTCGCAGACATCATCGATGCCCACAAGAACCAGCAGCTATGCTCGCTGACCGGCGTC
droVir3 scaffold_12963:18034580-18034692 - AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AT-----------TGTTATTCTGCAACTTCAACTTCAACTTAACCGCTTCTCCCTCTTCTTTCGCATTGCAGACATCATCGATGCCCACAAGAACCAACAGCTCTGCTCGCTAACTGGCGTC
droGri2 scaffold_15252:6090374-6090465 - TC------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGAAATGCTTCCATGTCTGTTATTTTGC-----------------------------------AATCA--TTGCAGACATCATCGATGCACACAAAAACCAACAACTCTGCTCGCTAACCGGTGTT
droWil2 scf2_1100000004521:11245885-11245949 - TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGACTATTTGCAGACATCATTGAGGCGCACAAGAACCAACAACTTTGCTCCTTAACCGGCGTC
dp5 4_group3:4658203-4658259 + T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGACATCATTGATGCCCACAAGAACCAACAGGTCTGCTCGCTGACTGGCGTC
droPer2 scaffold_1:6144023-6144079 + T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGACATCATTGATGCCCACAAGAACCAACAGGTCTGCTCGCTGACTGGCGTC
droAna3 scaffold_12916:2116351-2116415 - TC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATCCCCCGCAGACATTATTGAGGCACACAAGAACCAGCAACTGTGCTCCCTCACCGGAGTC
droBip1 scf7180000396430:63981-64045 - TC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATCCCCGGCAGACATAATCGAGGCACACAAGAACCAGCAACTGTGCTCCCTCACCGGAGTC
droKik1 scf7180000302401:399138-399194 + T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGACATTATCGAGGCGCACAAGAATCAGCAACTGTGCTCCTTGACCGGCGTG
droFic1 scf7180000454043:251076-251127 - -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAATTATCGACGCCCACAAAAACCAGCAGTTGTGCTCCTTGACCGGCGTG
droEle1 scf7180000491338:2139262-2139333 - TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTTT-----------------------------------AATCGCTCTGCAGATATTATCGATGCGCACAAGAACCAGCAATTGTGCTCCTTGACCGGCGTA
droBia1 scf7180000302422:5508150-5508207 + -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTGCAGACATTATCGATGCCCACAAGAACCAGCAATTGTGCTCCTTGACCGGCGTG
droTak1 scf7180000415867:417498-417550 - ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGACATTATAGATGCCCACAAAAATCAGCAATTGTGCTCTCTGACCGGCGTG
droEug1 scf7180000409447:126802-126886 - TCCTATAAAACATCTTTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------ATC---------------------------------------TTTCGCTTTGCAGACATTATCGATGCCCACAAAAACCAGCAATTGTGCTCCTTGACCGGCGTA
dm3 chr2L:18187383-18187447 - TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCACTTTACAGACATTATCGATGCCCACAAGAACCAGCAATTGTGCTCCCTGACCGGCGTG
droSim2 2l:17732559-17732623 - TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCACTTTACAGACATTATCGATGCCCACAAGAACCAGCAATTGTGCTCCCTGACCGGCGTG
droSec2 scaffold_7:1812946-1813010 - TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCACTTTACAGACATTATCGATGCCCACAAGAACCAGCAATTGTGCTCCCTGACCGGCGTG
droYak3 2R:4693141-4693214 - TT---------------GT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTTTA-----------------------------------AATCACTTTGCAGACATTATCGATGCCCACAAGAACCAGCAATTGTGCTCCTTGACCGGCGTG
droEre2 scaffold_4845:6082771-6082830 + ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCTTTGCAGACATTATCGATGCCCACAAGAACCAGCAATTGTGCTCCTTGACCGGCGTG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
AA--ATCGATCATATTTATATCTGGGATGGAATCCGGTGTATTTTTTGATATCTTATCTCGTAAGTCGGGAATTTTTTTGGGCAGCAAATCTATTCCATTAACTGATGTCACAGTCAATCGCAGAGCTTGGTAGGCTCAGGCTTTTCTTGCGTAATTTGTTATCCTGCAAGGCCTTTTTAATTGTTGCTT--------------------------------------TAACTCTTCGCAGACATCATCGATGCCCACAAGAACCAGCAGCTATGCTCGCTGACCGGCGTCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........................................................TCTCGTAAGTCGGGAATTTTTTTGGGC................................................................................................................................................................................................................271452.0045240100447
...........................................................................................................GTCACAGTCAATCGCAGAGCTTGGTAG.............................................................................................................................................................271158.0015800010157
...............................................................................................................................TTGGTAGGCTCAGGCTTTTCTTGCGT..........................................................................................................................................26196.00961001094
..........................................................................................................TGTCACAGTCAATCGCAGAGCTTGG................................................................................................................................................................25193.00931000092
...........................................................................................................GTCACAGTCAATCGCAGAGCTTGGTA..............................................................................................................................................................26184.00840001083
............................................................................................................TCACAGTCAATCGCAGAGCTTGGTAG.............................................................................................................................................................26169.00692000067
..........................................................TCGTAAGTCGGGAATTTTTTTGGGC................................................................................................................................................................................................................25163.00630001062
...................................................................................................TAACTGATGTCACAGTCAATCGCAGAGC....................................................................................................................................................................28160.00600001059
.............................................TTGATATCTTATCTCGTAAGTCGGGAAT..........................................................................................................................................................................................................................28155.00552000053
............................................................................................................TCACAGTCAATCGCAGAGCTTGGTAGG............................................................................................................................................................27150.00501000049
........................................................TCTCGTAAGTCGGGAATTTTTTTGGG.................................................................................................................................................................................................................26146.00462000044
...................................................................................................TAACTGATGTCACAGTCAATCGCAGAG.....................................................................................................................................................................27146.00460000046
...........................................................................................................GTCACAGTCAATCGCAGAGCTTGGTAGG............................................................................................................................................................28143.00430000043
...........................................................................................................GTCACAGTCAATCGCAGAGCTTGGT...............................................................................................................................................................25135.00350000035
...........................................................................................................GTCACAGTCAATCGCAGAGCTTGG................................................................................................................................................................24132.00320000032
..........................................................................................................TGTCACAGTCAATCGCAGAGCTTG.................................................................................................................................................................24129.00291000028
............................................TTTGATATCTTATCTCGTAAGTCGGGAAT..........................................................................................................................................................................................................................29125.00250000025
...........................TGGAATCCGGTGTATTTTTTGATATC..............................................................................................................................................................................................................................................26124.00240000024
............................................TTTGATATCTTATCTCGTAAGTCGGG.............................................................................................................................................................................................................................26122.00222000020
............................................................................................................TCACAGTCAATCGCAGAGCTTGGTA..............................................................................................................................................................25120.00200000020
..........................................................................................................TGTCACAGTCAATCGCAGAGCTTGGTAG.............................................................................................................................................................28120.00200000020
..........................................................................................................TGTCACAGTCAATCGCAGAGCTTGGTA..............................................................................................................................................................27119.00191000018
.............................................................................................................CACAGTCAATCGCAGAGCTTGGTAGG............................................................................................................................................................26118.00181000017
.......................................................................................................................................................................................................................................................TCGATGCCCACAAGAACCAGCAGCTA..................26118.00180000018
.................................................................................................................GTCAATCGCAGAGCTTGGTAGGCTCAGG......................................................................................................................................................28117.00170000017
.........................................................CTCGTAAGTCGGGAATTTTTTTGGGC................................................................................................................................................................................................................26117.00171000016
...............................................................................................................................TTGGTAGGCTCAGGCTTTTCTTGCGTC.........................................................................................................................................27117.00170000017
..................................................................................................TTAACTGATGTCACAGTCAATCGCAGAG.....................................................................................................................................................................28117.00170000017
..........................................................................................................TGTCACAGTCAATCGCAGAGCTTGGT...............................................................................................................................................................26116.00160000016
......................................................................................................CTGATGTCACAGTCAATCGCAGAGC....................................................................................................................................................................25115.00151000014
...............................................................................................................................TTGGTAGGCTCAGGCTTTTCTTGCGTAA........................................................................................................................................28114.00140000014
.......................................................................................................TGATGTCACAGTCAATCGCAGAGC....................................................................................................................................................................24114.00141000013
......................................................................................................................................................................................................................................................ATCGATGCCCACAAGAACCAGCAGCT...................26113.00130000013
............................................TTTGATATCTTATCTCGTAAGTCGG..............................................................................................................................................................................................................................25112.00120000012
.................................................................................................................GTCAATCGCAGAGCTTGGTAGGCT..........................................................................................................................................................24111.00110000011
...............................................................................................................................TTGGTAGGCTCAGGCTTTTCTTGCGTA.........................................................................................................................................27111.00110000011
.........................................................................TTTTTTGGGCAGCAAATCTATTCCAT................................................................................................................................................................................................26110.0010100009
.......................................................................................................................................................................................................................................................TCGATGCCCACAAGAACCAGCAGCT...................25110.00100000010
.....TCGATCATATTTATATCTGGGATGGAA...................................................................................................................................................................................................................................................................27110.00100000010
...........................................................................................................GTCACAGTCAATCGCAGAGCTTG.................................................................................................................................................................23110.00100000010
............................................................................................................TCACAGTCAATCGCAGAGCTTGG................................................................................................................................................................23110.00100000010
.......................................................................................................TGATGTCACAGTCAATCGCAGAGCTTG.................................................................................................................................................................27110.0010100009
.....TCGATCATATTTATATCTGGGATGG.....................................................................................................................................................................................................................................................................2519.009000009
................................................................................................................................TGGTAGGCTCAGGCTTTTCTTGCGT..........................................................................................................................................2519.009000009
.............................................TTGATATCTTATCTCGTAAGTCGGG.............................................................................................................................................................................................................................2519.009000009
.................................................................................................................GTCAATCGCAGAGCTTGGTAGGC...........................................................................................................................................................2319.009000009
..............................................TGATATCTTATCTCGTAAGTCGGGAAT..........................................................................................................................................................................................................................2718.008000008
..........................................TTTTTGATATCTTATCTCGTAAGTCG...............................................................................................................................................................................................................................2618.008200006
....................................................................................................AACTGATGTCACAGTCAATCGCAGAGC....................................................................................................................................................................2718.008000008
......................................................................................................................TCGCAGAGCTTGGTAGGCTCAGGC.....................................................................................................................................................2418.008100007
..............TTTATATCTGGGATGGAATCCGGTG............................................................................................................................................................................................................................................................2517.007100006
.............................................TTGATATCTTATCTCGTAAGTCGG..............................................................................................................................................................................................................................2417.007000007
..................................................................................................................TCAATCGCAGAGCTTGGTAGGCTCAGGC.....................................................................................................................................................2817.007000007
.................................................................TCGGGAATTTTTTTGGGCAGCAAATC........................................................................................................................................................................................................2617.007000007
.....................................................................................................................ATCGCAGAGCTTGGTAGGCTCAGGC.....................................................................................................................................................2516.006100005
.................................................................................................................GTCAATCGCAGAGCTTGGTAGGCTC.........................................................................................................................................................2516.006000006
.....................................................................................................ACTGATGTCACAGTCAATCGCAGAGC....................................................................................................................................................................2616.006000006
......................................................................................................CTGATGTCACAGTCAATCGCAGAG.....................................................................................................................................................................2416.006000006
....................................................................................................AACTGATGTCACAGTCAATCGCAGAG.....................................................................................................................................................................2616.006100005
.......................................................ATCTCGTAAGTCGGGAATTTTTTTGGGC................................................................................................................................................................................................................2815.005000005
..........................................................................................................TGTCACAGTCAATCGCAGAGCTTGGTC..............................................................................................................................................................2715.005000005
............................................TTTGATATCTTATCTCGTAAGTCGGGAA...........................................................................................................................................................................................................................2815.005100004
....................................................................................................................................................................................................................................................TCATCGATGCCCACAAGAACCAGCAGC....................2715.005000005
...............................................................................................................................TTGGTAGGCTCAGGCTTTTCTTGCG...........................................................................................................................................2515.005100004
.............................................TTGATATCTTATCTCGTAAGTCGGGA............................................................................................................................................................................................................................2615.005100004
..........................................................TCGTAAGTCGGGAATTTTTTTGGG.................................................................................................................................................................................................................2415.005000005
.............................................................................................................CACAGTCAATCGCAGAGCTTGGTAG.............................................................................................................................................................2515.005000005
............................................................................................................TCACAGTCAATCGCAGAGCTTGGT...............................................................................................................................................................2415.005000005
.........................................................................................................................................................................................TGCTT--------------------------------------TAACTCTTCGCAGACATCATCGA........................................2815.005000005
.................................................................................................................GTCAATCGCAGAGCTTGG................................................................................................................................................................1815.005000005
......................................................................................................................................................................................................................................................ATCGATGCCCACAAGAACCAGCAGC....................2514.004100003
..............TTTATATCTGGGATGGAATCCGGTGT...........................................................................................................................................................................................................................................................2614.004000004
.....TCGATCATATTTATATCTGGGATGGA....................................................................................................................................................................................................................................................................2614.004000004
.............................................................TAAGTCGGGAATTTTTTTGGGC................................................................................................................................................................................................................2214.004000004
.........................................................................................................ATGTCACAGTCAATCGCAGAGCTTGG................................................................................................................................................................2614.004000004
................................................................................................................................TGGTAGGCTCAGGCTTTTCTTGCGTC.........................................................................................................................................2614.004000004
.................................................................................................................................GGTAGGCTCAGGCTTTTCTTGCGT..........................................................................................................................................2414.004000004
..........................ATGGAATCCGGTGTATTTTTTGATATC..............................................................................................................................................................................................................................................2714.004000004
......................................................TATCTCGTAAGTCGGGAATTTTTTTGGGC................................................................................................................................................................................................................2914.004000004
...................................................................................................................................................................................................................................................ATCATCGATGCCCACAAGAACCAGC.......................2514.004100003
...........................TGGAATCCGGTGTATTTTTTGATA................................................................................................................................................................................................................................................2413.003000003
.......................................................................................................................................CTCAGGCTTTTCTTGCGTAATTTGT...................................................................................................................................2513.003000003
.........................................................................................................................................................................................TGCTT--------------------------------------TAACTCTTCGCAGACATCATCG.........................................2713.003100002
.......................................................................................................TGATGTCACAGTCAATCGCAGAGCTT..................................................................................................................................................................2613.003000003
...................................................................................................................................................................................................................................................ATCATCGATGCCCACAAGAACCAGCA......................2613.003100002
..............TTTATATCTGGGATGGAATCCGG..............................................................................................................................................................................................................................................................2313.003000003
.......................................................................................................TGATGTCACAGTCAATCGCAGAGCT...................................................................................................................................................................2513.003100002
..........................................................TCGTAAGTCGGGAATTTTTTTGGGCAGC.............................................................................................................................................................................................................2813.003000003
......................................................................................................................................................................................TGTTGCTT--------------------------------------TAACTCTTCGCAGACATC.............................................2613.003300000
...................................................................................................................................TAGGCTCAGGCTTTTCTTGCGTAATT......................................................................................................................................2613.003000003
......................................................................................................................TCGCAGAGCTTGGTAGGCTCAGGCTC...................................................................................................................................................2613.003000003
.............................................TTGATATCTTATCTCGTAAGTCGGGAA...........................................................................................................................................................................................................................2713.003000003
.........................................................................................TCTATTCCATTAACTGATGTCACAGTCA..............................................................................................................................................................................2813.003200001
..............TTTATATCTGGGATGGAATCCGGTGTA..........................................................................................................................................................................................................................................................2713.003000003
.............................................................................................................................................................................................................................................................CCCACAAGAACCAGCAGCTATGCTCGC...........2713.003100002
.........................................................................TTTTTTGGGCAGCAAATCTATTCCA.................................................................................................................................................................................................2513.003000003
...................................................................................................................................................................................................................................................ATCATCGATGCCCACAAGAACCAGCAGC....................2813.003000003
.......................................................................................................TGATGTCACAGTCAATCGCAGAGCTTGG................................................................................................................................................................2813.003000003
..........................................................................................................TGTCACAGTCAATCGCAGAGCTT..................................................................................................................................................................2313.003000003
.........................................................................................TCTATTCCATTAACTGATGTCACAG.................................................................................................................................................................................2513.003000003
....................................................................................................................................................................................................................................................TCATCGATGCCCACAAGAACCAGCAGCT...................2813.003000003
................................................................................................................................................................TATCCTGCAAGGCCTTTTTAATTGTT.........................................................................................................2612.002100001
..........................................................................................................TGTCACAGTCAATCGCAGAGCTTGGC...............................................................................................................................................................2612.002000002
......................TGGGATGGAATCCGGTGTATTTTTTGAT.................................................................................................................................................................................................................................................2812.002000002
........................................................................................................................................................................................TTGCTT--------------------------------------TAACTCTTCGCAGACATCA............................................2512.002100001
........................................................................................................................................TCAGGCTTTTCTTGCGTAATTTGT...................................................................................................................................2412.002000002
.........................................................................................TCTATTCCATTAACTGATGTCACAGT................................................................................................................................................................................2612.002100001
........................................................................................................GATGTCACAGTCAATCGCAGAGCTTG.................................................................................................................................................................2612.002000002
.......................................................................................................................................................................................................................................................TCGATGCCCACAAGAACCAGCAGCTAT.................2712.002100001
.............................................................................................................................................................................................................................................................................GCTATGCTCGCTGACCGGCGTC2212.002000002
..........................................................................................................................................................................................GCTT--------------------------------------TAACTCTTCGCAGACATCATCG.........................................2612.002000002
...........................................TTTTGATATCTTATCTCGTAAGTCG...............................................................................................................................................................................................................................2512.002100001
............................................................................................................................................................................................TT--------------------------------------TAACTCTTCGCAGACATCATCGAT.......................................2612.002000002
..........................ATGGAATCCGGTGTATTTTTTGATA................................................................................................................................................................................................................................................2512.002000002
...................................................................................................................................TAGGCTCAGGCTTTTCTTGCGTAATTTG....................................................................................................................................2812.002000002
.................................................................................................................GTCAATCGCAGAGCTTGGTAGGCTCAG.......................................................................................................................................................2712.002000002
................................................................................................................................................................TATCCTGCAAGGCCTTTTTAATTGT..........................................................................................................2512.002000002
...................................................................................................................................................TTGCGTAATTTGTTATCCTGCAAGG.......................................................................................................................2512.002000002
....................................................................................................................................................................................................................................................TCATCGATGCCCACAAGAACCAGCA......................2512.002000002
........................................................................................................................................................................................TTGCTT--------------------------------------TAACTCTTCGCAGACATCATCGA........................................2912.002200000
..........................................................TCGTAAGTCGGGAATTTTTTTGG..................................................................................................................................................................................................................2312.002000002
..............................................................................................................ACAGTCAATCGCAGAGCTTGGTAGGC...........................................................................................................................................................2612.002000002
..........................................TTTTTGATATCTTATCTCGTAAGTCGG..............................................................................................................................................................................................................................2712.002000002
....ATCGATCATATTTATATCTGGGATGGAA...................................................................................................................................................................................................................................................................2812.002000002
.............................................................................................................................................................TGTTATCCTGCAAGGCCTTTTTAATTG...........................................................................................................2712.002000002
..........................................................................................................TGTCACAGTCAATCGCAGAGCTTGGTAT.............................................................................................................................................................2812.002000002
.............................................................................................................................................................................................T--------------------------------------TAACTCTTCGCAGACATCATCGAT.......................................2512.002100001
....................................................................................................................................................TGCGTAATTTGTTATCCTGCAAGGCC.....................................................................................................................2612.002100001
...........................................................................................................................................................TTTGTTATCCTGCAAGGCCTTTTTA...............................................................................................................2512.002200000
...........................................................................................TATTCCATTAACTGATGTCACAGTCAAT............................................................................................................................................................................2812.002200000
..............................................................................TGGGCAGCAAATCTATTCCATTAACTGA.........................................................................................................................................................................................2812.002100001
.........TCATATTTATATCTGGGATGGAATCCG...............................................................................................................................................................................................................................................................2712.002100001
.............................................................................................................CACAGTCAATCGCAGAGCTTGGTA..............................................................................................................................................................2412.002100001
............................................TTTGATATCTTATCTCGTAAGTCGGGA............................................................................................................................................................................................................................2712.002000002
...............TTATATCTGGGATGGAATCCGGTGT...........................................................................................................................................................................................................................................................2512.002000002
......................................................................................................CTGATGTCACAGTCAATCGCAGAGCT...................................................................................................................................................................2612.002000002
................................TCCGGTGTATTTTTTGATATCTTATC.........................................................................................................................................................................................................................................2612.002000002
.................................................................................................................GTCAATCGCAGAGCTTGGTAGG............................................................................................................................................................2212.002000002
......................................................................................................CTGATGTCACAGTCAATCGCAGAGCTT..................................................................................................................................................................2712.002000002
......................................................................................................................................................................................................................................................ATCGATGCCCACAAGAACCAGCAGCTA..................2712.002000002
..........................................................................................................TGTCACAGTCAATCGCAGAGCTTGGTAA.............................................................................................................................................................2812.002000002
..................................................................................................................TCAATCGCAGAGCTTGGTAGGCTCAGG......................................................................................................................................................2712.002000002
.................................................................................................................GTCAATCGCAGAGCTTGGTAGGCTCAGGC.....................................................................................................................................................2912.002000002
....................................................................................................................................................................................................................................................TCATCGATGCCCACAAGAACCAGCAG.....................2611.001000001
..............TTTATATCTGGGATGGAATCCGGT.............................................................................................................................................................................................................................................................2411.001000001
...........................................................................................................GTCACAGTCAATCGCAGAGCTTGA................................................................................................................................................................2411.001000001
...........................................................................................................GTCACAGTCAATCGCAGAGCTT..................................................................................................................................................................2211.001000001
.........................................................CTCGTAAGTCGGGAATTTTTTTGGG.................................................................................................................................................................................................................2511.001000001
..........CATATTTATATCTGGGATGGAATC.................................................................................................................................................................................................................................................................2411.001000001
...........................TGGAATCCGGTGTATTTTTTGATATCT.............................................................................................................................................................................................................................................2711.001000001
...................................................................................................................................TAGGCTCAGGCTTTTCTTGCGTAAT.......................................................................................................................................2511.001000001
.............ATTTATATCTGGGATGGAATCCGGTG............................................................................................................................................................................................................................................................2611.001000001
........................................................................TTTTTTTGGGCAGCAAATCTATTCCA.................................................................................................................................................................................................2611.001000001
.....................................TGTATTTTTTGATATCTTATCTCGTAA...................................................................................................................................................................................................................................2711.001000001
....................................................................................................................................................TGCGTAATTTGTTATCCTGCAAGGC......................................................................................................................2511.001000001
.............................................................................................................................................................................................T--------------------------------------TAACTCTTCGCAGACATCA............................................2011.001000001
.....................CTGGGATGGAATCCGGTGTATTTTTC....................................................................................................................................................................................................................................................2611.001000001
....................................................................................................................................................................................................................................................TCATCGATGCCCACAAGAACCAG........................2311.001100000
..............................................................................................................ACAGTCAATCGCAGAGCTTGGTA..............................................................................................................................................................2311.001000001
...................................................................................AGCAAATCTATTCCATTAACTGATGTCA....................................................................................................................................................................................2811.001000001
....ATCGATCATATTTATATCTGGGATGG.....................................................................................................................................................................................................................................................................2611.001000001
.................................................................................................................................................................................TTAATTGTTGCTT--------------------------------------TAACTCTTCGCA...................................................2511.001100000
.....................................................................................................................ATCGCAGAGCTTGGTAGGCTCAGGCTTT..................................................................................................................................................2811.001000001
...................................................................................................TAACTGATGTCACAGTCAATCGCAG.......................................................................................................................................................................2511.001000001
.......................................................................................................................CGCAGAGCTTGGTAGGCTCAGGCTT...................................................................................................................................................2511.001100000
.....................................................................................................................ATCGCAGAGCTTGGTAGGCTCAGG......................................................................................................................................................2411.001000001
....................................................................................................................................................................................................................................TAACTCTTCGCAGACATCATCGATC......................................2511.001000001
..........................................................TCGTAAGTCGGGAATTTTTTTGGGCA...............................................................................................................................................................................................................2611.001000001
..............................................................................................................ACAGTCAATCGCAGAGCTTGGTAG.............................................................................................................................................................2411.001000001
...............................................................................................................................................................................TTTTAATTGTTGCTT--------------------------------------TAACTCTTCG.....................................................2511.001000001
.................................................................................................................................GGTAGGCTCAGGCTTTTCTTGCGTAA........................................................................................................................................2611.001000001
....................................................................................................................................................................................................................................................TCATCGATGCCCACAAGAACCAGCAGCTA..................2911.001100000
...........................................................................................................GTCACAGTCAATCGCAGAGCTTGGTAT.............................................................................................................................................................2711.001000001
..................................................................................................TTAACTGATGTCACAGTCAATCGCAGAGC....................................................................................................................................................................2911.001100000
......CGATCATATTTATATCTGGGATGGAA...................................................................................................................................................................................................................................................................2611.001000001
......................................................................................................CTGATGTCACAGTCAATCGCAGAGCTTG.................................................................................................................................................................2811.001000001
..............................................................................TGGGCAGCAAATCTATTCCATTAACTG..........................................................................................................................................................................................2711.001000001
.......................................................................................................................................................................................................................................................TCGATGCCCACAAGAACCAGCAGCTATA................2811.001000001
................................................................................................................................TGGTAGGCTCAGGCTTTTCTTGCGTAA........................................................................................................................................2711.001000001
..............................................................................................................ACAGTCAATCGCAGAGCTTGGTAGG............................................................................................................................................................2511.001000001
..................................................................................................................................................................................................................................................................AAGAACCAGCAGCTATGCTCGCT..........2311.001000001
..........................................................................TTTTTGGGCAGCAAATCTATTCCAT................................................................................................................................................................................................2511.001000001
............................................................................................................................................................................................TT--------------------------------------TAACTCTTCGCAGACATCATCGA........................................2511.001000001
............................................TTTGATATCTTATCTCGTAAGTCG...............................................................................................................................................................................................................................2411.001000001
........................................................................................................................GCAGAGCTTGGTAGGCTCAGGCTTTTC................................................................................................................................................2711.001000001
................................TCCGGTGTATTTTTTGATATCTTATCTCG......................................................................................................................................................................................................................................2911.001000001
.........................................................................................................ATGTCACAGTCAATCGCAGAGCTTGAC...............................................................................................................................................................2711.001000001
.................................................................TCGGGAATTTTTTTGGGCAGCAAA..........................................................................................................................................................................................................2411.001000001
...................................................................................................TAACTGATGTCACAGTCAATCGCAGC......................................................................................................................................................................2611.001000001
..........................................................................................................TGTCACAGTCAATCGCAGAGCTTGGA...............................................................................................................................................................2611.001000001
.......................................................................................................TGATGTCACAGTCAATCGCAGAG.....................................................................................................................................................................2311.001000001
....................................................................................................................................................................................................................................TAACTCTTCGCAGACATCATCGATGCCC...................................2811.001100000
......................................................................................................................................................................................................................................................ATCGATGCCCACAAGAACCAGCAGCTC..................2711.001000001
................TATATCTGGGATGGAATCCGGTGT...........................................................................................................................................................................................................................................................2411.001000001
...............TTATATCTGGGATGGAATCCGGTG............................................................................................................................................................................................................................................................2411.001000001
................................................................................................................................................................................................................................................................ACAAGAACCAGCAGCTATGCTCGCT..........2511.001000001
........................................................TCTCGTAAGTCGGGAATTTTTTTGGGCT...............................................................................................................................................................................................................2811.001000001
...........................................................................TTTTGGGCAGCAAATCTATTCCATT...............................................................................................................................................................................................2511.001000001
....................................................................................................................AATCGCAGAGCTTGGTAGGCTCAGG......................................................................................................................................................2511.001000001
...............................................................................................................CAGTCAATCGCAGAGCTTGGTAGGCT..........................................................................................................................................................2611.001000001
........................................................................................................GATGTCACAGTCAATCGCAGAGC....................................................................................................................................................................2311.001000001
..........................................................TCGTAAGTCGGGAATTTTTTTGGGCAG..............................................................................................................................................................................................................2711.001000001
.............................................................................................................................................................TGTTATCCTGCAAGGCCTTTTTAATC............................................................................................................2611.001100000
.....................CTGGGATGGAATCCGGTGTATTTTTTC...................................................................................................................................................................................................................................................2711.001000001
.............................................................................TTGGGCAGCAAATCTATTCCATTAACTG..........................................................................................................................................................................................2811.001000001
.....................CTGGGATGGAATCCGGTGTATTTTTTGA..................................................................................................................................................................................................................................................2811.001000001
.....................................................................................................................................................................................TTGTTGCTT--------------------------------------TAACTCTTCGCAGACATC.............................................2711.001000001
................................................................................................................................TGGTAGGCTCAGGCTTTTCTTGCGTA.........................................................................................................................................2611.001000001
......................................................................................................................TCGCAGAGCTTGGTAGGCTCAGG......................................................................................................................................................2311.001000001
...........................................TTTTGATATCTTATCTCGTAAGTCGG..............................................................................................................................................................................................................................2611.001000001
...........................................................................................................................................................TTTGTTATCCTGCAAGGCCTTT..................................................................................................................2211.001100000
................TATATCTGGGATGGAATCCGG..............................................................................................................................................................................................................................................................2111.001000001
..................................................................................................................TCAATCGCAGAGCTTGGTAGGCTCA........................................................................................................................................................2511.001000001
...............................................................................................................CAGTCAATCGCAGAGCTTGGTAG.............................................................................................................................................................2311.001000001
.....................................................................................................ACTGATGTCACAGTCAATCGCAGAGCTT..................................................................................................................................................................2811.001000001
..........................................................................................................................................................................................GCTT--------------------------------------TAACTCTTCGCAGACATCATCGA........................................2711.001000001
.....................................................................................................................................................................................TTGTTGCTT--------------------------------------TAACTCTTCGCAGACA...............................................2511.001100000
...........................................................................................................................................................................................................................................................TGCCCACAAGAACCAGCAGCTATGCTC.............2711.001100000
................................................................................................................................TGGTAGGCTCAGGCTTTTCTTGC............................................................................................................................................2311.001000001
.A--ATCGATCATATTTATATCTGGGATG......................................................................................................................................................................................................................................................................2611.001000001
.............................................................................................................................................CTTTTCTTGCGTAATTTGTTATCCTG............................................................................................................................2611.001100000
................................................................................................................AGTCAATCGCAGAGCTTGGTAGG............................................................................................................................................................2311.001000001
....................................................................................................................................................................................................................................TAACTCTTCGCAGACATCATCGAT.......................................2411.001000001
........................................................................TTTTTTTGGGCAGCAAATC........................................................................................................................................................................................................1911.001000001
............................................................................................................................................................................................TT--------------------------------------TAACTCTTCGCAGACATCATCG.........................................2411.001000001
.....................................................................................................................................................GCGTAATTTGTTATCCTGCAAGGCCT....................................................................................................................2611.001100000
......................................................................................................................................................................................................................................................ATCGATGCCCACAAGAACCAGCAGCTATG................2911.001000001
....................................................................................................................AATCGCAGAGCTTGGTAGGCTCAGGCTC...................................................................................................................................................2811.001000001
...................................................................................................................................TAGGCTCAGGCTTTTCTTGCGTAA........................................................................................................................................2411.001000001
.............................................................................................TTCCATTAACTGATGTCACAGTCAA.............................................................................................................................................................................2511.001100000
...........................TGGAATCCGGTGTATTTTTTGATAT...............................................................................................................................................................................................................................................2511.001100000
droVir3
AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AT-----------TGTTATTCTGCAACTTCAACTTCAACTTAACCGCTTCTCCCTCTTCTTTCGCATTGCAGACATCATCGATGCCCACAAGAACCAACAGCTCTGCTCGCTAACTGGCGTCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droGri2
TC------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGAAATGCTTCCATGTCTGTTATTTTGC-----------------------------------AATCA--TTGCAGACATCATCGATGCACACAAAAACCAACAACTCTGCTCGCTAACCGGTGTTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGACTATTTGCAGACATCATTGAGGCGCACAAGAACCAACAACTTTGCTCCTTAACCGGCGTCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGACATCATTGATGCCCACAAGAACCAACAGGTCTGCTCGCTGACTGGCGTCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGACATCATTGATGCCCACAAGAACCAACAGGTCTGCTCGCTGACTGGCGTCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
TC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATCCCCCGCAGACATTATTGAGGCACACAAGAACCAGCAACTGTGCTCCCTCACCGGAGTCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATCCCCGGCAGACATAATCGAGGCACACAAGAACCAGCAACTGTGCTCCCTCACCGGAGTCSizeHit CountTotal NormTotal
No Reads
droKik1
T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGACATTATCGAGGCGCACAAGAATCAGCAACTGTGCTCCTTGACCGGCGTGSizeHit CountTotal NormTotal
No Reads
droFic1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAATTATCGACGCCCACAAAAACCAGCAGTTGTGCTCCTTGACCGGCGTGSizeHit CountTotal NormTotal
No Reads
droEle1
TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTTT-----------------------------------AATCGCTCTGCAGATATTATCGATGCGCACAAGAACCAGCAATTGTGCTCCTTGACCGGCGTASizeHit CountTotal NormTotal
No Reads
droBia1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTGCAGACATTATCGATGCCCACAAGAACCAGCAATTGTGCTCCTTGACCGGCGTGSizeHit CountTotal NormTotal
No Reads
droTak1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGACATTATAGATGCCCACAAAAATCAGCAATTGTGCTCTCTGACCGGCGTGSizeHit CountTotal NormTotal
No Reads
droEug1
TCCTATAAAACATCTTTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------ATC---------------------------------------TTTCGCTTTGCAGACATTATCGATGCCCACAAAAACCAGCAATTGTGCTCCTTGACCGGCGTASizeHit CountTotal NormTotal
No Reads
dm3
TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCACTTTACAGACATTATCGATGCCCACAAGAACCAGCAATTGTGCTCCCTGACCGGCGTGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................................................................................................................................................................................................................................CACAAGAACCAGCAATTGTGC...............2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................AATTGTGCTCCCTGACCGGCGT.2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
................................................................................................................................................................................................................................................GACATTATCGATGCCCACA................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................ACAAGAACCAGCAATTGTGC...............2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................................CACAAGAACCAGCAATTGTG................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
droSim2
TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCACTTTACAGACATTATCGATGCCCACAAGAACCAGCAATTGTGCTCCCTGACCGGCGTGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCACTTTACAGACATTATCGATGCCCACAAGAACCAGCAATTGTGCTCCCTGACCGGCGTGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
TT---------------GT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTTTA-----------------------------------AATCACTTTGCAGACATTATCGATGCCCACAAGAACCAGCAATTGTGCTCCTTGACCGGCGTGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCTTTGCAGACATTATCGATGCCCACAAGAACCAGCAATTGTGCTCCTTGACCGGCGTGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/18/2015 at 12:54 AM