ID:

dmo_1644

 Coordinate:

scaffold_6500:25620238-25620416 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-38.6 -38.6 -38.5

Flybase annnotation

exon [dmoj_GLEANR_621:6]; exon [dmoj_GLEANR_621:7]; CDS [Dmoj\GI21363-cds]; CDS [Dmoj\GI21363-cds]; intron [Dmoj\GI21363-in]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ACGAGGTCAACACCATGGAGGAGTTTGAAAAGGAGAAGGTCGTTTTCCAGGTGAGTTCAATGCTAATCGATAACAAATGCCTGAATATATATTTGACTTGCCGACATTTATTCTGCTTGCATGCAGCTGAGGGAACTAGTGGTAAAAAAAATTGTTTTTTGCTAAAATAAATATGTAATATATATTTATTTTCTGGATGACGGCACTAATCGAATATTTCTCATTGTAGAAAATCTGCCAGGATGCAGATAACAAACGTGAGGACATGAAGTGGCTGGT
**************************************************(((((((((..((...............)).))))...((((((((..(((((.((((((..((((......))))((.((....))))((((((((((.....))))))))))((((((((((((...))))))))))))..)))))).)))))....))))))))..))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total V110
male body		 M046
female body
 M060
embryo
 V049
head
 V056
head
.......................................................................................................................................................................................................................................................GATAACAAACGTGAGGACATGAAGT....... 25 0 1 2.00 2 0 2 0 0 0
..........................................................................................................................................GTTGTAACAAAGATTGTTTT......................................................................................................................... 20 3 20 1.45 29 14 15 0 0 0
......................GTTTGAAAAGGAGAAGGTCGT............................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0
......................GTTTGAAAAGGAGAAGGTC.............................................................................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0
..............................................................................................................................................................................................................................TTTCCAGAAAATCTGCCAGGATGCAG............................... 26 3 1 1.00 1 0 0 1 0 0
.........................TGAAAAGGAGAAGGTCGTT........................................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0
..GAGGTCAACACCATGGAGGAG................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0
....................................................................................................................................................................................................................................................GCAGATAACAAACGTGAGGA............... 20 0 1 1.00 1 0 1 0 0 0
.....................AGTTTGAAAAGGAGAAGGTC.............................................................................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0
..GAGGTCAACACCATGGAGGAGTTTGAAA......................................................................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0
...AGGTCAACACCATGGAGGA................................................................................................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0
..............................................................................................................................................................................................................................................................AACGTGAGGACATGAAGTG...... 19 0 1 1.00 1 0 1 0 0 0
..........................................................................................................................................................................................TATTTTCTGGATGACGGCACTAATCG................................................................... 26 0 1 1.00 1 1 0 0 0 0
......................................................................................................................GCATGATGCTGAAGGAACTAG............................................................................................................................................ 21 3 1 1.00 1 0 0 0 0 1
...........ACCATGGAGGAGTTTGAA.......................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0
.............CATGGAGGAGTTTGAAAAGGAGAAGGTC.............................................................................................................................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0
......................................................................................................................................................................................................................................................AGATAACAAACGTGAGGACAT............ 21 0 1 1.00 1 0 1 0 0 0
.......CAACACCATGGAGGAGTTTGAAAA........................................................................................................................................................................................................................................................ 24 0 1 1.00 1 0 0 0 1 0
.............CATGGAGGAGTTTGAAAAGGAG.................................................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0
.......................................................................................................................................................................................................................................................GATAACAAACGTGAGGACATGA.......... 22 0 1 1.00 1 1 0 0 0 0
.........................................................................................................................................AGTTGTAACAAAGATTGTTTT......................................................................................................................... 21 3 9 0.78 7 0 7 0 0 0
......................................................................................................................................CCTAGTGGTGAAAAAAATTTT............................................................................................................................ 21 3 4 0.25 1 0 1 0 0 0
.........................................................................................................................................AGTTGTAACAAAGATTGTTT.......................................................................................................................... 20 3 20 0.15 3 2 1 0 0 0
........................................................................................................................TGGCCGCTGAGGGAACTAG............................................................................................................................................ 19 3 11 0.09 1 1 0 0 0 0
......................................................................................................................................................................................................................TATTTGTCGTTGTAGAAAA.............................................. 19 2 13 0.08 1 0 0 1 0 0
................................................................................................................................GAGGGAATAGGTGGTAAAA.................................................................................................................................... 19 3 17 0.06 1 1 0 0 0 0
............................................................................................................................................................................................................AGTAATAGTATATTTCTCATT...................................................... 21 3 20 0.05 1 0 1 0 0 0
...............................................................................................................................................................................................ACTGGGTGACGGCCCTAA...................................................................... 18 3 20 0.05 1 0 0 0 1 0
.........................................................................................................................................AGTTGTAACAAAGATTGTT........................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

TGCTCCAGTTGTGGTACCTCCTCAAACTTTTCCTCTTCCAGCAAAAGGTCCACTCAAGTTACGATTAGCTATTGTTTACGGACTTATATATAAACTGAACGGCTGTAAATAAGACGAACGTACGTCGACTCCCTTGATCACCATTTTTTTTAACAAAAAACGATTTTATTTATACATTATATATAAATAAAAGACCTACTGCCGTGATTAGCTTATAAAGAGTAACATCTTTTAGACGGTCCTACGTCTATTGTTTGCACTCCTGTACTTCACCGACCA
**************************************************(((((((((..((...............)).))))...((((((((..(((((.((((((..((((......))))((.((....))))((((((((((.....))))))))))((((((((((((...))))))))))))..)))))).)))))....))))))))..))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V049
head
 V110
male body
......................................................................................................................................GGATCACCACTTTTCTTAA.............................................................................................................................. 19 3 20 4.60 92 90 1 1
.........................................................................................................................................TCAACATTGTTTCTAACAAAA......................................................................................................................... 21 3 9 0.56 5 5 0 0
.......................................................................................................TGTAAATAAGTGGAACGTA............................................................................................................................................................. 19 2 2 0.50 1 0 1 0
............................................................................................................................................................................................................TCATTATCATATAAAGAGTAA...................................................... 21 3 20 0.40 8 7 0 1
.........................................................................................................................................TCAACATTGTTTCTAACAAAAA........................................................................................................................ 22 3 5 0.20 1 1 0 0
..............................................................................................................................................................................................................ATTATCATATAAAGAGTAA...................................................... 19 2 20 0.10 2 2 0 0
.........................................................................................................................................TCACCATTTTTCTTAAAACA.......................................................................................................................... 20 3 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6500:25620188-25620466 - dmo_1644 ACGAGGTCAACACCATGGAGGAGTTTGAAAAGGAGAAGGTCGTTTTCCAGGTGAGTT------------CAAT--GCTA-ATCGA---TAACAAAT----------------GCCT-----------------G-AATATATATTT-GACTTGCCGACATT---------------TAT---TCTGCT-TGCATG-CAGCTGAGGGAACTAGTGGTAAAAAAAA----TTGTTTTTTGCT-----------------------------------------------------------------------------------------------------------AAAATAA------------------------------------------------------------------------------------------------------------AT------------------------ATGTA-AT---ATAT----------ATTTATTTTCTGGATGACGGCACTAATCGAATATT-------TCTCATTGTAGAAAATCTGCCAGGATGCAGATAACAAACGTGAGGACATGAAGTGGCTGGT
droVir3 scaffold_12963:6474736-6475013 - dvi_10658 ATGAGGTCAACAGCATGGAGGAGTTTGAAAAGGAGAAGGTTGTTTTCCAGGTGAGTT------------GAAT--GCTA-ATCGC---CCCCAAAAA-------------TAGCTTG----------------A-TAT--AAAAAC-TCCTTGCTAATATT---------------TGT---TACGCC-TGCATG-CAGCTAAGGGAACTAGTGGTAACT-AAA----TTGCTTT-TGCTAA--T------------------ATAA------------------------------------CAAATACACATATTCCT-AAAAAAAA--------ATCCTATTAA------------------------------------------------------------------------------------------------------------------------------------------------TA-ACAA-------------------------------------------TATTGTT--------TTGTTCGCAGAAAATCTGCCAGGATGCAGATAACAAACGCGAGGACATGAAGTGGCTGGT
droGri2 scaffold_15252:9702776-9702973 - ATGAGGTCAACACCATGGAGGAGTTTGAAAAGGAGAAGGTTGTTTTCCAGGTGAGTT------------AAAT--GCTA-ATCCC---TTAAAAAAA---------CAGTCAGCTTC----------------A-AAT--TAT---AAT-----CCCCATT---------------TAT---AACGCC-TGCATG-CAGCTAAGGGAACTAGTGGTAACT-AAATTAATTGCTTT-TGCCTA--T----------------------------------------------------------CTACTATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT---A-CTAGTCAATATGATT--------------------------------------TATTT---------------------------------------------------------
droWil2 scf2_1100000004585:1156960-1157250 - ATGAGGTCAACACCATGGAGGAATTTGAGAAGGAGAAGGTTGTTTTCCAGGTAAGTCTTGCGTAAAATTAA---AAAAATATAT-----------------AT-----------TAA----------------A-AAT--------CATCTATTCATTGAAACATCTTTTGTCATTTGT-CTACTGCA-TGC-----AGCTAAGGGAGCTAGTGGTAATTGAAA----ACGCTTT-TACATT--TAA--------------------------------------------------------TTTTAAAG---------------------CTTCTGATCTAT------------------------------------------------------------------------------------------------------------AACAAACAAAAT------------------------AAGTA-AC---TTAT----------------------------GC--TTAAT----------TT--ATTTTCTCACAGAAAATCTGTCAAGATGCCGATAACAAACGAGAGGACATGAAATGGTTGGT
dp5 4_group3:2777854-2778019 - ATGAAGTCAATACCATGGAGGAGTTTGAGAAGGAGAAGGTCGTCTTCCAGGTACGTTTT----------CC---TTAGA-ATGAT----TACTATCA-TCCCTTT-CATT----CGTAAA-------------A-TAT--------ATTCTTCTCATTAAC---------------CAT---TATGCT-TGCATTAAAGCTGAGGGAGCTAGTGGTAAATTAAT----ATGCTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_1:4262782-4262948 - ATGAAGTCAATACCATGGAGGAGTTTGAAAAGGAGAAGGTCGTCTTCCAGGTACGTTTT----------CC---TTAGA-ATAAT----TACTATCA-TCCCTTT-C----ATCCGTAAA------------AA-TAT--------ATTCTTCTCATTAAC---------------CAT---TATGCT-TGCATTAAAGCTGAGGGAGCTAGTGGTAAATTAAT----ATGCTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_12916:10036193-10036508 - ATGAAGTAAACACCATGGAAGAATTCGAGAAGGAGAAGGTGGTCTTCCAGGTGAGTT------------CAAGATCAGAAATCA-TTATTTTAAACTTTGCATCCACAATCATCCTG----------------A-AAT--------AATCTTCTCATTAAT---------------CATTCTCATGCA-TGCCGT-AAGCTGAGGGAGCTAGTGGTAACT-AAT----CTGCTTT-ACAATT--T----------------------------------------------------------CC--------------A-CTTTTTAAAAGCCAATGTTCTTTTAA-------------------------------------------------------------------------------------------------------------------AAAGCTACCTCCTGGATTTTAAATTTCACTA-A-AATA-AA-----------TT--------------------------------T-AT--ATTTTTCTTTAGAAAATCTGCCAAGATGCCGACAACAAGCGCGAGGATATGAAGTGGCTGGT
droBip1 scf7180000396580:997290-997604 + ATGAAGTAAACACCATGGAGGAATTCGAGAAGGAGAAGGTTGTCTTCCAGGTGAGCT------------AAAGTCCAGAAACAA---GTCCCAAACTTTTCATTCAAATTCATCCTG----------------A-AAT--------AATCTTCTCATTAAA---------------CATTCTCATGCA-TGCCGT-AAGCTGAGGGAGCTAGTGGTAACT-AAT----CTGCTTT-TATATT--T----------------------------------------------------------CAAC---------------TTTTCAAAGGACAATGTCCTATTAA-------------------------------------------------------------------------------------------------------------------ATGGGCTACTCCTGGATTTTCAATCTCACTA-ACAATC-CT-----------TT--------------------------------T-CC--ATTTTGCCCTAGAAAATCTGCCAAGATGCCGACAACAAGCGCGAGGACATGAAATGGCTGGT
droKik1 scf7180000302643:736456-736845 - ACGAAGTAAACACTATGGAGGAGTTTGAAAAGGAGAAGGTTGTCTTCCAGGTGAGTT------------TT---CTAAA-TTAATTAGGTTCAAGTCCTCCATTT-CAATCATCGTG-AA-------------A-AAT--------AATCCTCTCATTAAC---------------CCTTCACACGCA-TGCCTTCAAGCTGAGGGAGCTAGTGGTAACT-AAT----CTGCTTT-TATATG--T--TTAGATATTTTATAGTTCCGCAGTGATGCCATC---------------------------AATATATA---------------------------------------------------TATAATCTTTGCAATTGTTTTATTAAAATC----TATAATATCCGTAAAAAT-AAAAACCA-------ATGGCATCCCTGCTGTCTCCCAAAACATC------------------------TTAGTA-AC---TCCC----------------------------TT--TACC---------T-TT--ATTTTTAAACAGAAAATCTGCCAAGATGCGGACAACAAACGTGAAGATATGAAATGGCTTGT
droFic1 scf7180000453842:1114783-1115135 - ATGAAGTGAACACCATGGAGGAATTCGAAAAGGAGAAAGTTGTCTTCCAGGTGAGCT------------GC---ATAAA-TTATATTTAATTAAGCTTTCCATTT-CATTCATCCCT----------------A-AAT--------AATCTTCTCATTACC---------------CAT---CATGCA-TGCAAA-AAGCTGAGGGAGCTAGTGGTAACT-AAT----CTGATAT-TATATA--GAATCTATAAT---CACT---------------C-TTCACTGT-GTTGTAAACTTCCTT--------------------------------------------AAGACAGATATTACTT---------------------------------------------CTGTGTGAA-ATAAGTTTA-------CTGGCAGCACAGTTC-------------C-------------------------TTGTA-AC---CCAA----------------------------AA--CTAATTCATTATTA-T---TTTTTACAATAGAAAATCTGCCAAGATGCTGACAACAAACGCGAGGATATGAAGTGGCTGGT
droEle1 scf7180000491273:89016-89341 - ATGAAGTTAACACCATGGAGGAATTCGAGAAGGAGAAGGTTGTCTTCCAGGTGAGCT------------AA---GCAAAAATAAACTTCTTTATGCTATCCATTT-CAATCATACCT----------------A-AAT--------AATCTTCTCATTACC---------------CAT---CATGCA-TGCCTT-AAGCTGAGGGAGCTAGTGGTAACT-AAT----CTGCTTT-TATATA--AAATTAACTAT---C-----------TGATGCCAACTGTCTTTTC------------TT--------------------------------------------AAAACAAAGATTTGTTTGGCATGATCT----------------------------------------------------------------------------------------T-------------------------TTGCA-AC---C-TTTATTAATAAAATT------------------------------AAT-TT--TTTTTGTAACAGAAAATCTGCCAAGATGCCGACAACAAACGGGAGGATATGAAATGGCTGGT
droRho1 scf7180000779577:92010-92368 - ATGAAGTTAATACCATGGAGGAATTCGAGAAGGAGAAGGTTGTCTTCCAGGTGAGTT------------AA---ACAAACATAT---GTTTTCACCTTTCCATTT-CGCTCATCCCT----------------A-AAT--------AATCTTCTCATTACC---------------TAT---CACGCA-TGCATT-AAGCTGAGGGAGCTAGTGGTAACT-AAT----CTGCTTT-TATATA--GAATCAAATAT---CTAATACCGCTGTGATGCCAACTGC-TTTTC------------TT--------------------------------------------AAA--------------------------------------TTAACATTTAATTATAATAACAG-----A-ATGAGCACA-------CTGGCATCACAGTTA-------------A------------------------TTTCTA-AG---CCCA----------------------------TA--CTAATTAAATATTA-TT--TATTTGTAACAGAAAATCTGCCAAGATGCTGACAACAAACGCGAGGATATGAAGTGGCTGGT
droBia1 scf7180000302261:567818-568176 + ATGAAGTCAATACCATGGAGGAATTCGAGAAGGAGAAGGTCGTCTTCCAGGTGAGAT------------TT---ATAGA-ATAGCTTTGCTTAAGCTGCCCATCT-GAATCATTCCT----------------A-AAT--------AATCTTCTCATTACCC--------------CAT---CATGCA-TGCCTA-AAGCTAAGGGAGCTAGTGGTAACT-AAT----CTGCTTT-TATTAT--T--------------TAATATCACGATGATGCCC-TTGCCTTT-CTTTAAAAGTTC---------------------------------------------------------------------------------------------ACTA------AATACCTATTAAGAG-AGAGCACATAGGCATCTGGCATCACA-----------TAACTAT------------------------TCGGTA-AC---CCCTTACTTATAAAATT------------------------------TAT-TT--TATTTATAACAGAAAATCTGCCAGGATGCTGACAACAAGCGCGAGGATATGAAATGGCTGGT
droTak1 scf7180000415704:400092-400371 - ATGAGGTCAATACCATGGAGGAATTCGAGAAGGAGAAAGTCGTGTTCCAGGTGAGCT------------AC---TCAGA-ATATCTTCTTGTAAGCCTTCCATTT-CAATCATCCCT----------------A-AAT--------AATATTCTCATTACCC--------------CAT---CATGCA-TGCCTT-AAGCTGAGGGAGCTAGTGGTAACT-AAT----CTGCTTT-TACATA--GAATC-------------------------------------------------------------------TTCA-CTCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTA-AC---CTAA----------------------------TA--CTAATTAAATGTTT-CTCCTTTTTGCAACAGAAAATCTGCCAAGATGCTGACAACAAACGCGAGGATATGAAGTGGTTGGT
droEug1 scf7180000409005:1014846-1015134 + ATGAAGTGAATACCATGGAGGAATTCGAGAAGGAGAAGGTTGTCTTCCAGGTGAGAT------------TC---AAAGA-ATTTTTTCCTTTAAGCTTTCCATTT-CAATCATCTTT----------------AAAAT--------AATATTCTCATTACCC--------------CAT---CACGCA-TGCCTT-AAGCTGAGGGAGCTAGTGGTAACT-AAT----CTGCTTT-TATTTA--T----------------------------------------------------------AAC-TATTTTTAATATT-ATTAAA------------------------------------------------------------------------CT-----------------------------------------------------------------------------------------A-TA-A---CCTT----------------------------AA--CTAATTAAACATTC-TT--TAATTGCAACAGAAAATCTGCCAAGATGCTGACAATAAACGCGAGGATATGAAATGGCTGGT
dm3 chr2L:5125573-5125877 + ACGAAGTGAATACCATGGAGGAATTCGAAAAGGAGAAGGTGGTCTTCCAGGTGAGCT------------AG---TAATA-ATGAT---CTATAAACATTCCATTT-CGATCACCTAT-AAATAATAAATAAATA-AAT--------AATCCTCTCATTACC---------------CAT---CATGCATTGCCCTGAAGCTGAGGGAGCTAGTGGTAACT-AAT----ATGCTTC-TATATATAT----------------------------------------------------------CTCCTATGTTTATTTCAATTTTTTAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-G---CCAT----------------------------GG--CTAATTAATTATTAATT--ATCTTAAAACAGAAAATCTGCCAAGATGCTGACAACAAACGCGAGGACATGAAATGGTTGGT
droSim2 2l:4939007-4939291 + dsi_12359 ACGAAGTTAATACCATGGAGGAATTCGAAAAGGAGAAGGTGGTCTTCCAGGTAAGCT------------AA---TGATA-ATTAT---CTATAAACATTCCATTT-CGATCACCTAT----------------A-AAT--------AATCCTCTCATTACC---------------CAT---CACGCA-TGCCCTGAAGCTGAGGGAGCTAGTGGTAACT-AAT----ATGCTTT-TATATA--T----------------------------------------------------------CACCTATGTGTACTTCA-ATTTGAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-C---CCAT----------------------------GT--CTAACTTATTAATC-TT--ATCTTATAACAGAAAATCTGTCAAGATGCTGACAACAAACGCGAGGACATGAAATGGTTGGT
droSec2 scaffold_5:3212190-3212474 + ACGAAGTTAATACCATGGAGGAATTCGAAAAGGAGAAGGTGGTCTTCCAGGTAAGCT------------AA---TAATA-ATGAT---CTATAAACATTCCATTT-CGATCACCTAT----------------A-AAT--------AATCCTCTCATTACC---------------CAT---CACGCA-TGCCCTGAAGCTGAGGGAGCTAGTGGTAACT-AAT----ATGCTTT-TATATA--T----------------------------------------------------------CACCTATGTGTACTTCA-ATTTGAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-T---CCAT----------------------------GG--CTAATTTATTGTTC-TT--ATCTTATGATAGAAAATCTGCCAGGATGCTGACAACAAACGCGAGGACATGAAATGGTTGGT
droYak3 2L:10398445-10398726 - ACGAAGTTAATACCATGGAGGAATTCGAAAAGGAGAAGGTCGTTTTCCAGGTGAGCA------------CA---TTTAA-ATAAT---CCATAAACATGCCATTT-CCATCACCTAT----------------A-AAT--------AATCCTCTCATTACC---------------CAT---CACGCA-TGCCTT-AAGCTGAGGGAGCTAGTGGTAACT-AAT----ATGCTTT-TATTTA--T----------------------------------------------------------TACCGATG--TACTTCA-TTTTTGAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-A---CCAT----------------------------GG--CTAATTTACTGTTC-TT--ACCTTTTAACAGAAAATCTGCCAAGATGCTGACAACAAACGCGAGGACATGAAATGGTTGGT
droEre2 scaffold_4929:5206681-5206964 + ACGAAGTTAATACCATGGAGGAATTCGAAAAGGAGAAGGTTGTTTTCCAGGTGAGCT------------CA---TTATA-ATGAT---CTATAAACATTCCATTT-CAATCACCTAT----------------A-AAT--------AATCCTCTCATTACC---------------CAT---CACGCA-TGCCTT-AAGCTGAGGGAGCTAGTGGTAACT-AAT----ATGCTTT-TATATC--T----------------------------------------------------------TACCAATGTGTACTTCA-TTTTGGAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------AT-G---CCAT----------------------------GG--CTAATTTATTATTT-GT--ATCTTATAACAGAAAATCTGCCAGGACGCTGACAACAAACGCGAGGACATGAAGTGGCTGGT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
ACGAGGTCAACACCATGGAGGAGTTTGAAAAGGAGAAGGTCGTTTTCCAGGTGAGTT------------CAAT--GCTA-ATCGA---TAACAAAT----------------GCCT-----------------G-AATATATATTT-GACTTGCCGACATT---------------TAT---TCTGCT-TGCATG-CAGCTGAGGGAACTAGTGGTAAAAAAAA----TTGTTTTTTGCT-----------------------------------------------------------------------------------------------------------AAAATAA------------------------------------------------------------------------------------------------------------AT------------------------ATGTA-AT---ATAT----------ATTTATTTTCTGGATGACGGCACTAATCGAATATT-------TCTCATTGTAGAAAATCTGCCAGGATGCAGATAACAAACGTGAGGACATGAAGTGGCTGGTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAACAAACGTGAGGACATGAAGT.......2512.002200000
......................GTTTGAAAAGGAGAAGGTCGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
......................GTTTGAAAAGGAGAAGGTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
.........................TGAAAAGGAGAAGGTCGTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
..GAGGTCAACACCATGGAGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGATAACAAACGTGAGGA...............2011.001100000
.....................AGTTTGAAAAGGAGAAGGTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
..GAGGTCAACACCATGGAGGAGTTTGAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000001
...AGGTCAACACCATGGAGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGTGAGGACATGAAGTG......1911.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTTCTGGATGACGGCACTAATCG..........................................................................2611.001000001
...........ACCATGGAGGAGTTTGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
.............CATGGAGGAGTTTGAAAAGGAGAAGGTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATAACAAACGTGAGGACAT............2111.001100000
.......CAACACCATGGAGGAGTTTGAAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000
.............CATGGAGGAGTTTGAAAAGGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAACAAACGTGAGGACATGA..........2211.001000001
droVir3
ATGAGGTCAACAGCATGGAGGAGTTTGAAAAGGAGAAGGTTGTTTTCCAGGTGAGTT------------GAAT--GCTA-ATCGC---CCCCAAAAA-------------TAGCTTG----------------A-TAT--AAAAAC-TCCTTGCTAATATT---------------TGT---TACGCC-TGCATG-CAGCTAAGGGAACTAGTGGTAACT-AAA----TTGCTTT-TGCTAA--T------------------ATAA------------------------------------CAAATACACATATTCCT-AAAAAAAA--------ATCCTATTAA------------------------------------------------------------------------------------------------------------------------------------------------TA-ACAA-------------------------------------------TATTGTT--------TTGTTCGCAGAAAATCTGCCAGGATGCAGATAACAAACGCGAGGACATGAAGTGGCTGGTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATGCAGATAACAAACGCGAGGA...............2611.001010000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGAGGACATGAAGTGGCTGGT2311.001000100000000000000000000000000000000000000000000000000000000000
..GAGGTCAACAGCATGGAGGAGTTTGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000001000
ATGAGGTCAACAGCATGGAGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000100000000000000000000000000000000000000000
...........AGCATGGAGGAGTTTGAAAAGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
.....GTCAACAGCATGGAGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000001000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAACAAACGCGAGGACATGAAGT.......2511.001000100000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCGAGGACATGAAGTGGCTG..2211.001000000000000000000000000000000000000100000000000000000000000000
...........................AAAAGGAGAAGGTTGTTTTCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000010000000000000000000000000000000000000000000
........................TTGAAAAGGAGAAGGTTGTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCAGGATGCAGATAACAAACGC....................2411.001000000000000000001000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAACAAACGCGAGGACAT............2011.001000000000000000001000000000000000000000000000000000000000000000
..................................................GTGAGTT------------GAAT--GCTA-ATCGC---C...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000010000000000000000000000000000000000000000000
droGri2
ATGAGGTCAACACCATGGAGGAGTTTGAAAAGGAGAAGGTTGTTTTCCAGGTGAGTT------------AAAT--GCTA-ATCCC---TTAAAAAAA---------CAGTCAGCTTC----------------A-AAT--TAT---AAT-----CCCCATT---------------TAT---AACGCC-TGCATG-CAGCTAAGGGAACTAGTGGTAACT-AAATTAATTGCTTT-TGCCTA--T----------------------------------------------------------CTACTATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT---A-CTAGTCAATATGATT--------------------------------------TATTT---------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
ATGAGGTCAACACCATGGAGGAATTTGAGAAGGAGAAGGTTGTTTTCCAGGTAAGTCTTGCGTAAAATTAA---AAAAATATAT-----------------AT-----------TAA----------------A-AAT--------CATCTATTCATTGAAACATCTTTTGTCATTTGT-CTACTGCA-TGC-----AGCTAAGGGAGCTAGTGGTAATTGAAA----ACGCTTT-TACATT--TAA--------------------------------------------------------TTTTAAAG---------------------CTTCTGATCTAT------------------------------------------------------------------------------------------------------------AACAAACAAAAT------------------------AAGTA-AC---TTAT----------------------------GC--TTAAT----------TT--ATTTTCTCACAGAAAATCTGTCAAGATGCCGATAACAAACGAGAGGACATGAAATGGTTGGTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAACAAACGAGAGGAC..............1815.00541000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAACGAGAGGACATGAAATGGTT...2613.00300120
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGATAACAAACGAGAGGAC..............2211.00110000
...................GGAATTTGAGAAGGAGAAGGTTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100
..............ATGGAGGAATTTGAGAAGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
......................ATTTGAGAAGGAGAAGGTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACAAACGAGAGGACATG...........2011.00110000
...................GGAATTTGAGAAGGAGAAGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGATAACAAACGAGAGGACATGAA.........2611.00100010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAACAAACGAGAGGACATG...........2111.00110000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAACAAACGAGAGGACA.............1911.00100100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCAAGATGCCGATAACAAACGA....................2511.00100100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAACAAACGAGAGGACATGAAATGGT....2811.00100100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGATAACAAACGAGAG.................1911.00100100
dp5
ATGAAGTCAATACCATGGAGGAGTTTGAGAAGGAGAAGGTCGTCTTCCAGGTACGTTTT----------CC---TTAGA-ATGAT----TACTATCA-TCCCTTT-CATT----CGTAAA-------------A-TAT--------ATTCTTCTCATTAAC---------------CAT---TATGCT-TGCATTAAAGCTGAGGGAGCTAGTGGTAAATTAAT----ATGCTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........ACCATGGAGGAGTTTGAGAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
droPer2
ATGAAGTCAATACCATGGAGGAGTTTGAAAAGGAGAAGGTCGTCTTCCAGGTACGTTTT----------CC---TTAGA-ATAAT----TACTATCA-TCCCTTT-C----ATCCGTAAA------------AA-TAT--------ATTCTTCTCATTAAC---------------CAT---TATGCT-TGCATTAAAGCTGAGGGAGCTAGTGGTAAATTAAT----ATGCTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................GAAAAGGAGAAGGTCGTCTTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002200000
.....................AGTTTGAAAAGGAGAAGGTCGTCTTCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000001
.TGAAGTCAATACCATGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
droAna3
ATGAAGTAAACACCATGGAAGAATTCGAGAAGGAGAAGGTGGTCTTCCAGGTGAGTT------------CAAGATCAGAAATCA-TTATTTTAAACTTTGCATCCACAATCATCCTG----------------A-AAT--------AATCTTCTCATTAAT---------------CATTCTCATGCA-TGCCGT-AAGCTGAGGGAGCTAGTGGTAACT-AAT----CTGCTTT-ACAATT--T----------------------------------------------------------CC--------------A-CTTTTTAAAAGCCAATGTTCTTTTAA-------------------------------------------------------------------------------------------------------------------AAAGCTACCTCCTGGATTTTAAATTTCACTA-A-AATA-AA-----------TT--------------------------------T-AT--ATTTTTCTTTAGAAAATCTGCCAAGATGCCGACAACAAGCGCGAGGATATGAAGTGGCTGGTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCCGACAACAAGCGCGAGG................2212.002002000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGCGCGAGGATATGAAGTGGCT...2511.001000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCAAGATGCCGACAACAAGCGCG...................2611.001001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCCGACAACAAGCGCGAGGATA.............2511.001000001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACAACAAGCGCGAGGATATGAAG........2511.001100000
.......AAACACCATGGAAGAATTCGAGAAGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGCGCGAGGATATGAAGT.......2111.001000001
..GAAGTAAACACCATGGAAGAATTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
.......................TTCGAGAAGGAGAAGGTGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
.....................AATTCGAGAAGGAGAAGGTGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTGCCAAGATGCCGAC.............................1911.001010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCCGACAACAAGCGCG...................1911.001000001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGCGAGGATATGAAGTGGCT...2211.001100000
....................GAATTCGAGAAGGAGAAGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGCGCGAGGATATGAA.........1911.001000010
.............................................................................................................................................................................................TGCCGT-AAGCTGAGGGAGCTA.....................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
.............................AAGGAGAAGGTGGTCTTCCAGAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCAAGATGCCGACAACAAGCGC....................2511.001100000
..........................GAGAAGGAGAAGGTGGTCTTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
....................GAATTCGAGAAGGAGAAGGTGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAGATGCCGACAACAAGCGCGA..................2511.001000001
.......................TTCGAGAAGGAGAAGGTGGTCTTCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCCAAGATGCCGACAACAAGCGCGA..................2811.001000001
...............................................................................................................................................................AT---------------CATTCTCATGCA-TGCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
droBip1
ATGAAGTAAACACCATGGAGGAATTCGAGAAGGAGAAGGTTGTCTTCCAGGTGAGCT------------AAAGTCCAGAAACAA---GTCCCAAACTTTTCATTCAAATTCATCCTG----------------A-AAT--------AATCTTCTCATTAAA---------------CATTCTCATGCA-TGCCGT-AAGCTGAGGGAGCTAGTGGTAACT-AAT----CTGCTTT-TATATT--T----------------------------------------------------------CAAC---------------TTTTCAAAGGACAATGTCCTATTAA-------------------------------------------------------------------------------------------------------------------ATGGGCTACTCCTGGATTTTCAATCTCACTA-ACAATC-CT-----------TT--------------------------------T-CC--ATTTTGCCCTAGAAAATCTGCCAAGATGCCGACAACAAGCGCGAGGACATGAAATGGCTGGTSizeHit CountTotal NormTotal
No Reads
droKik1
ACGAAGTAAACACTATGGAGGAGTTTGAAAAGGAGAAGGTTGTCTTCCAGGTGAGTT------------TT---CTAAA-TTAATTAGGTTCAAGTCCTCCATTT-CAATCATCGTG-AA-------------A-AAT--------AATCCTCTCATTAAC---------------CCTTCACACGCA-TGCCTTCAAGCTGAGGGAGCTAGTGGTAACT-AAT----CTGCTTT-TATATG--T--TTAGATATTTTATAGTTCCGCAGTGATGCCATC---------------------------AATATATA---------------------------------------------------TATAATCTTTGCAATTGTTTTATTAAAATC----TATAATATCCGTAAAAAT-AAAAACCA-------ATGGCATCCCTGCTGTCTCCCAAAACATC------------------------TTAGTA-AC---TCCC----------------------------TT--TACC---------T-TT--ATTTTTAAACAGAAAATCTGCCAAGATGCGGACAACAAACGTGAAGATATGAAATGGCTTGTSizeHit CountTotal NormTotal
No Reads
droFic1
ATGAAGTGAACACCATGGAGGAATTCGAAAAGGAGAAAGTTGTCTTCCAGGTGAGCT------------GC---ATAAA-TTATATTTAATTAAGCTTTCCATTT-CATTCATCCCT----------------A-AAT--------AATCTTCTCATTACC---------------CAT---CATGCA-TGCAAA-AAGCTGAGGGAGCTAGTGGTAACT-AAT----CTGATAT-TATATA--GAATCTATAAT---CACT---------------C-TTCACTGT-GTTGTAAACTTCCTT--------------------------------------------AAGACAGATATTACTT---------------------------------------------CTGTGTGAA-ATAAGTTTA-------CTGGCAGCACAGTTC-------------C-------------------------TTGTA-AC---CCAA----------------------------AA--CTAATTCATTATTA-T---TTTTTACAATAGAAAATCTGCCAAGATGCTGACAACAAACGCGAGGATATGAAGTGGCTGGTSizeHit CountTotal NormTotal
No Reads
droEle1
ATGAAGTTAACACCATGGAGGAATTCGAGAAGGAGAAGGTTGTCTTCCAGGTGAGCT------------AA---GCAAAAATAAACTTCTTTATGCTATCCATTT-CAATCATACCT----------------A-AAT--------AATCTTCTCATTACC---------------CAT---CATGCA-TGCCTT-AAGCTGAGGGAGCTAGTGGTAACT-AAT----CTGCTTT-TATATA--AAATTAACTAT---C-----------TGATGCCAACTGTCTTTTC------------TT--------------------------------------------AAAACAAAGATTTGTTTGGCATGATCT----------------------------------------------------------------------------------------T-------------------------TTGCA-AC---C-TTTATTAATAAAATT------------------------------AAT-TT--TTTTTGTAACAGAAAATCTGCCAAGATGCCGACAACAAACGGGAGGATATGAAATGGCTGGTSizeHit CountTotal NormTotal
No Reads
droRho1
ATGAAGTTAATACCATGGAGGAATTCGAGAAGGAGAAGGTTGTCTTCCAGGTGAGTT------------AA---ACAAACATAT---GTTTTCACCTTTCCATTT-CGCTCATCCCT----------------A-AAT--------AATCTTCTCATTACC---------------TAT---CACGCA-TGCATT-AAGCTGAGGGAGCTAGTGGTAACT-AAT----CTGCTTT-TATATA--GAATCAAATAT---CTAATACCGCTGTGATGCCAACTGC-TTTTC------------TT--------------------------------------------AAA--------------------------------------TTAACATTTAATTATAATAACAG-----A-ATGAGCACA-------CTGGCATCACAGTTA-------------A------------------------TTTCTA-AG---CCCA----------------------------TA--CTAATTAAATATTA-TT--TATTTGTAACAGAAAATCTGCCAAGATGCTGACAACAAACGCGAGGATATGAAGTGGCTGGTSizeHit CountTotal NormTotal
No Reads
droBia1
ATGAAGTCAATACCATGGAGGAATTCGAGAAGGAGAAGGTCGTCTTCCAGGTGAGAT------------TT---ATAGA-ATAGCTTTGCTTAAGCTGCCCATCT-GAATCATTCCT----------------A-AAT--------AATCTTCTCATTACCC--------------CAT---CATGCA-TGCCTA-AAGCTAAGGGAGCTAGTGGTAACT-AAT----CTGCTTT-TATTAT--T--------------TAATATCACGATGATGCCC-TTGCCTTT-CTTTAAAAGTTC---------------------------------------------------------------------------------------------ACTA------AATACCTATTAAGAG-AGAGCACATAGGCATCTGGCATCACA-----------TAACTAT------------------------TCGGTA-AC---CCCTTACTTATAAAATT------------------------------TAT-TT--TATTTATAACAGAAAATCTGCCAGGATGCTGACAACAAGCGCGAGGATATGAAATGGCTGGTSizeHit CountTotal NormTotal
No Reads
droTak1
ATGAGGTCAATACCATGGAGGAATTCGAGAAGGAGAAAGTCGTGTTCCAGGTGAGCT------------AC---TCAGA-ATATCTTCTTGTAAGCCTTCCATTT-CAATCATCCCT----------------A-AAT--------AATATTCTCATTACCC--------------CAT---CATGCA-TGCCTT-AAGCTGAGGGAGCTAGTGGTAACT-AAT----CTGCTTT-TACATA--GAATC-------------------------------------------------------------------TTCA-CTCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTA-AC---CTAA----------------------------TA--CTAATTAAATGTTT-CTCCTTTTTGCAACAGAAAATCTGCCAAGATGCTGACAACAAACGCGAGGATATGAAGTGGTTGGTSizeHit CountTotal NormTotal
No Reads
droEug1
ATGAAGTGAATACCATGGAGGAATTCGAGAAGGAGAAGGTTGTCTTCCAGGTGAGAT------------TC---AAAGA-ATTTTTTCCTTTAAGCTTTCCATTT-CAATCATCTTT----------------AAAAT--------AATATTCTCATTACCC--------------CAT---CACGCA-TGCCTT-AAGCTGAGGGAGCTAGTGGTAACT-AAT----CTGCTTT-TATTTA--T----------------------------------------------------------AAC-TATTTTTAATATT-ATTAAA------------------------------------------------------------------------CT-----------------------------------------------------------------------------------------A-TA-A---CCTT----------------------------AA--CTAATTAAACATTC-TT--TAATTGCAACAGAAAATCTGCCAAGATGCTGACAATAAACGCGAGGATATGAAATGGCTGGTSizeHit CountTotal NormTotal
No Reads
dm3
ACGAAGTGAATACCATGGAGGAATTCGAAAAGGAGAAGGTGGTCTTCCAGGTGAGCT------------AG---TAATA-ATGAT---CTATAAACATTCCATTT-CGATCACCTAT-AAATAATAAATAAATA-AAT--------AATCCTCTCATTACC---------------CAT---CATGCATTGCCCTGAAGCTGAGGGAGCTAGTGGTAACT-AAT----ATGCTTC-TATATATAT----------------------------------------------------------CTCCTATGTTTATTTCAATTTTTTAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-G---CCAT----------------------------GG--CTAATTAATTATTAATT--ATCTTAAAACAGAAAATCTGCCAAGATGCTGACAACAAACGCGAGGACATGAAATGGTTGGTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAAACGCGAGGACATGAAAT.......2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................GAATTCGAAAAGGAGAAGGTGGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000
...................GGAATTCGAAAAGGAGAAGGTGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000
....AGTGAATACCATGGAGGAATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000100000000000000000000000
.........................CGAAAAGGAGAAGGTGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
.........................CGAAAAGGAGAAGGTGGTCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............ATGGAGGAATTCGAAAAGGAGAAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................AAAAGGAGAAGGTGGTCTTCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000
.......................TTCGAAAAGGAGAAGGTGGTCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATGAAATGGTTGGT1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...AAGTGAATACCATGGAGGAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.CGAAGTGAATACCATGGAGGAATTCGAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................GGAATTCGAAAAGGAGAAGGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................ATTCGAAAAGGAGAAGGTGGTCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........ACCATGGAGGAATTCGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........TACCATGGAGGAATTCGAAAAGGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............CATGGAGGAATTCGAAAAGGAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
..........TACCATGGAGGAATTCGAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCCAAGATGCTGACAACAA........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TTCGAAAAGGAGAAGGTGGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
.................GAGGAATTCGAAAAGGAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................GAAAAGGAGAAGGTGGTCTTCCAGAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAACAAACGCGAGGACAT............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........ACCATGGAGGAATTCGAAAAGGAGATC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAAACGCGAGGACATGAA.........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................ATTCGAAAAGGAGAAGGTGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....GTGAATACCATGGAGGAATTCGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGACAACAAACGCGAGGACATGA..........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.....................AATTCGAAAAGGAGAAGGTGGTCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAACGCGAGGACATGAAAT.......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................AGGAATTCGAAAAGGAGAAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGACAACAAACGCGAGGAC..............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCGAGGACATGAAATGGT....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCAAGATGCTGACAAC..........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCTGACAACAAACGCGAGGACA.............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..........TACCATGGAGGAATTCGAAAAGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................AATTCGAAAAGGAGAAGGTGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCGAGGACATGAAATGGTTGGT2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.......GAATACCATGGAGGAATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
..GAAGTGAATACCATGGAGGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCAAGATGCTGACAACA.........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........ACCATGGAGGAATTCGAAAAGGAGAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
.......GAATACCATGGAGGAATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
...............TGGAGGAATTCGAAAAGGAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................AGAAGGTGGTCTTCCAGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................AAGGAGAAGGTGGTCTAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
droSim2
ACGAAGTTAATACCATGGAGGAATTCGAAAAGGAGAAGGTGGTCTTCCAGGTAAGCT------------AA---TGATA-ATTAT---CTATAAACATTCCATTT-CGATCACCTAT----------------A-AAT--------AATCCTCTCATTACC---------------CAT---CACGCA-TGCCCTGAAGCTGAGGGAGCTAGTGGTAACT-AAT----ATGCTTT-TATATA--T----------------------------------------------------------CACCTATGTGTACTTCA-ATTTGAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-C---CCAT----------------------------GT--CTAACTTATTAATC-TT--ATCTTATAACAGAAAATCTGTCAAGATGCTGACAACAAACGCGAGGACATGAAATGGTTGGTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAACAAACGCGAGGAC..............1812.00200200000000000000
........AATACCATGGAGGAATTCGAAAAGGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAATCTGTCAAGATGCT................................2011.00100100000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGATGCTGACAACAAACGCGAGGA...............2611.00101000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAACGCGAGGACATGAAATGGTTGGT2811.00100000010000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGCGAGGACATGAAAT.......1911.00100100000000000000
droSec2
ACGAAGTTAATACCATGGAGGAATTCGAAAAGGAGAAGGTGGTCTTCCAGGTAAGCT------------AA---TAATA-ATGAT---CTATAAACATTCCATTT-CGATCACCTAT----------------A-AAT--------AATCCTCTCATTACC---------------CAT---CACGCA-TGCCCTGAAGCTGAGGGAGCTAGTGGTAACT-AAT----ATGCTTT-TATATA--T----------------------------------------------------------CACCTATGTGTACTTCA-ATTTGAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-T---CCAT----------------------------GG--CTAATTTATTGTTC-TT--ATCTTATGATAGAAAATCTGCCAGGATGCTGACAACAAACGCGAGGACATGAAATGGTTGGTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................CGAAAAGGAGAAGGTGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020020
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCGAGGACATGAAATGGTTGGT2511.0010010
.......TAATACCATGGAGGAATTCGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATCTGCCAGGATGCT................................1911.0010001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAACAAACGCGAGGAC..............1811.0010010
.......TAATACCATGGAGGAATTCGAAAAGGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0011000
.....................AATTCGAAAAGGAGAAGGTGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCCAGGATGCTGACAACA.........................2111.0010010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATCTGCCAGGATGCT................................1811.0010010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCAGGATGCTGACAACA.........................2011.0010010
droYak3
ACGAAGTTAATACCATGGAGGAATTCGAAAAGGAGAAGGTCGTTTTCCAGGTGAGCA------------CA---TTTAA-ATAAT---CCATAAACATGCCATTT-CCATCACCTAT----------------A-AAT--------AATCCTCTCATTACC---------------CAT---CACGCA-TGCCTT-AAGCTGAGGGAGCTAGTGGTAACT-AAT----ATGCTTT-TATTTA--T----------------------------------------------------------TACCGATG--TACTTCA-TTTTTGAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-A---CCAT----------------------------GG--CTAATTTACTGTTC-TT--ACCTTTTAACAGAAAATCTGCCAAGATGCTGACAACAAACGCGAGGACATGAAATGGTTGGTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCAAGATGCTGACAAC..........................1911.00100100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAACGCGAGGACATGAAATGGTTGGT2811.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAAACGCGAGGACATGAAAT.......2311.00100000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAACAAACGCGAGGACA.............1911.00100100000000
........................TCGAAAAGGAGAAGGTCGTTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
droEre2
ACGAAGTTAATACCATGGAGGAATTCGAAAAGGAGAAGGTTGTTTTCCAGGTGAGCT------------CA---TTATA-ATGAT---CTATAAACATTCCATTT-CAATCACCTAT----------------A-AAT--------AATCCTCTCATTACC---------------CAT---CACGCA-TGCCTT-AAGCTGAGGGAGCTAGTGGTAACT-AAT----ATGCTTT-TATATC--T----------------------------------------------------------TACCAATGTGTACTTCA-TTTTGGAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------AT-G---CCAT----------------------------GG--CTAATTTATTATTT-GT--ATCTTATAACAGAAAATCTGCCAGGACGCTGACAACAAACGCGAGGACATGAAGTGGCTGGTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............ATGGAGGAATTCGAAAAGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0021000100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCGAGGACATGAAGTGGCT...2111.0010000100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAACGCGAGGACATGAAGTGGCT...2511.0010000100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAACGCGAGGACATGA..........1811.0010000010
......................ATTCGAAAAGGAGAAGGTTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
.............CATGGAGGAATTCGAAAAGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000
......TTAATACCATGGAGGAATTCGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATCTGCCAGGACGCTGA..............................2111.0010000100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAATCTGCCAGGACGCTGA..............................2211.0010000100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCCAGGACGCTGACAACA.........................2111.0011000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAACGCGAGGACATGAAGTGGCC...2611.0010100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCTGCCAGGACGCTGA..............................1911.0010000100
....AGTTAATACCATGGAGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010000
....AGTTAATACCATGGAGGAATTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGAGGACATGAAGTGGCTGGT2311.0010000100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGACGCTGACAACAAACGCGAGGAC..............2611.0011000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGCCAGGACGCTGACA............................1911.0011000000
..GAAGTTAATACCATGGAGGAATTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000010
.........................CGAAAAGGAGAAGGTTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010

Generated: 05/18/2015 at 12:53 AM