ID:

dmo_163

 Coordinate:

scaffold_6500:32232082-32232166 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-15.1 -14.9 -14.7

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
Gypsy1-LTR_DmojLTRGypsy+
mature
  1. dmo_163  scaffold_6500:32232142-32232165 +
  2. dmo_162  scaffold_6500:32240500-32240523 +
star
  1. dmo_163  scaffold_6500:32232082-32232106 +
  2. dmo_162  scaffold_6500:32240440-32240464 +

Sense Strand Reads

TACTGTAAGGTGGCCTTTTTGCCCACCTTACATATTGCATTCTAGTTGTCGAGTTTACTGGAGCTTGTAGTGAGTAAGTTAGTAGTAAGTTATATTTGTAGTAAGTAAGTTGGTTAGTGAGGTATATTCGTAGCATGTAAGATAGTGAAAGGAAATGAATTGGATTATAGTCATTAAGTTTATAT
***********************************(((((....((((.(((((.((((...(((......((.(((.(((.((.((...........)).))..))).))).)))))..)))).))))))))))))))..........************************************ 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V110
male body		 M060
embryo
 V041
embryo
 V056
head
..............................................................................................................TGGTTAGTGAGGTATATTCGTAGC................................................... 24 0 2 5.50 11 6 3 0 2 0
..................................................GAGTTTACTGGAGCTTGTAGTGAGT.............................................................................................................. 25 0 2 3.50 7 5 0 2 0 0
..................................................GAGTTTACTGGAGCTTGTAGTGAG............................................................................................................... 24 0 2 2.00 4 4 0 0 0 0
...............................................................CATGATGTGAGTAAGTTAG....................................................................................................... 19 3 20 1.60 32 10 22 0 0 0
..................................................GAGTTTACTGGAGCTTGTAGTGA................................................................................................................ 23 0 2 1.50 3 3 0 0 0 0
.............................................................................................................................................................AATTGGATTATAGTCATTAAGT...... 22 0 20 1.30 26 25 0 1 0 0
..............................................................................................................TGGTTAGTGAGGTATATTCGTAGCA.................................................. 25 0 2 1.00 2 2 0 0 0 0
..............................................................................................................TGGTTAGTGAGGTATATTCGTAG.................................................... 23 0 2 1.00 2 2 0 0 0 0
..............................................................................................................TGGTTAGTGAGGTATATTCGTAGCATG................................................ 27 0 2 1.00 2 2 0 0 0 0
...................................................GAGTTACTGGAGCTTGTAGTGAG............................................................................................................... 23 3 2 0.50 1 0 1 0 0 0
..................................................GAGTTTACTGGAGCTTGTAGTG................................................................................................................. 22 0 2 0.50 1 1 0 0 0 0
....................................................GTTTACTGGAGCTTGTAGTGA................................................................................................................ 21 0 2 0.50 1 0 1 0 0 0
.................................................................................................................TTAGTGAGGTATATTCGTAGC................................................... 21 0 2 0.50 1 1 0 0 0 0
.....................................................TTTACTGGAGCTTGTAGTGAGTAA............................................................................................................ 24 0 2 0.50 1 1 0 0 0 0
...................................................AGTTTACTGGAGCTTGTAGTGAG............................................................................................................... 23 0 2 0.50 1 1 0 0 0 0
.....................................................................................................TAAGTAAGTTGGTTAGTGAGG............................................................... 21 0 2 0.50 1 0 0 1 0 0
..................................................GAGTTTACTGGAGCTTGTAGTGAGTAA............................................................................................................ 27 0 2 0.50 1 1 0 0 0 0
..................................................GAGTTTACTGGAGCTTGTAGT.................................................................................................................. 21 0 2 0.50 1 1 0 0 0 0
.....................................................TTTACTGGAGCTTGTAGTGA................................................................................................................ 20 0 2 0.50 1 1 0 0 0 0
....................................................GTTTACTGGAGCTTGTAGTGAGT.............................................................................................................. 23 0 2 0.50 1 0 0 1 0 0
...............................................................................................................GGTTAGTGAGGTATATTCGTAG.................................................... 22 0 2 0.50 1 1 0 0 0 0
...................................................................................................................ATTGAGGTATATTCGTAGC................................................... 19 1 2 0.50 1 0 0 1 0 0
..............................................................................................................TGGTTAGTGAGGTATATTTGTAGCA.................................................. 25 1 2 0.50 1 1 0 0 0 0
..............................................................................................................TGGTTAGTGAGGTATATTCCTAGCA.................................................. 25 1 2 0.50 1 0 1 0 0 0
.....................................................................................................TAAGCAACTTGGTTAGTGAGG............................................................... 21 2 2 0.50 1 0 0 0 0 1
....................................................GTTTACTGGAGCTTGTAGTGAGTA............................................................................................................. 24 0 2 0.50 1 1 0 0 0 0
.................................................................................................................TTAGTGAGGTATATTCGTAGCAT................................................. 23 0 2 0.50 1 1 0 0 0 0
..................................................GGGTTTACTGGAGCTTGTAGTGAGT.............................................................................................................. 25 1 2 0.50 1 0 0 1 0 0
....................................................GTTTACTGGAGCTTGTAGTGAGTAAG........................................................................................................... 26 0 2 0.50 1 1 0 0 0 0
.............................................................................................................................................................AATTGGATTATAGTCATTAAG....... 21 0 20 0.40 8 5 1 1 0 1
.........................................................................GTAAATTAGTAGTAAGTGA............................................................................................. 19 2 20 0.30 6 3 3 0 0 0
............GCCTTTTTGCCCACCTTACATATTGCA.................................................................................................................................................. 27 0 20 0.20 4 4 0 0 0 0
.....................................................................................................................TGAAGTATATACGTGGCATGT............................................... 21 3 6 0.17 1 0 0 0 0 1
.............................................................................................................................................................AATTGGATTATAGTCATTAAGTT..... 23 0 20 0.15 3 3 0 0 0 0
.............................................................................................................................................................AATTGGATTATAGTCATTAAGTTTATAT 28 0 20 0.15 3 3 0 0 0 0
............GCCTTTTTGCCCACCTTACATATTGC................................................................................................................................................... 26 0 20 0.10 2 2 0 0 0 0
..............................................................................................................................................................ATTGGATTATAGTCATTAAG....... 20 0 20 0.10 2 2 0 0 0 0
.............................................................................................................................................................AATTGGATTATAGTCATTAAGTC..... 23 1 20 0.10 2 1 1 0 0 0
............GCCTTTTTGCCCACCTTACATATTG.................................................................................................................................................... 25 0 20 0.10 2 2 0 0 0 0
..........................................................................................................................TATATTCGTAGCATGTAAGATAG........................................ 23 0 15 0.07 1 1 0 0 0 0
...........................................................................................................................ATATTCGTAGCATGTAAGATAGTG...................................... 24 0 15 0.07 1 1 0 0 0 0
...................................................................................................AGTAAGTAAGTTGGTTAGTG.................................................................. 20 0 20 0.05 1 1 0 0 0 0
........................................................................................................GTAAGTGGTTTCGTGAGG............................................................... 18 3 20 0.05 1 0 1 0 0 0
.............................................................................................................................................................AATTGGATTATAGTCATTAAGTTTAT.. 26 0 20 0.05 1 1 0 0 0 0
.......................................................................GAGTAAGTTAGTAGTAAGTTA............................................................................................. 21 0 20 0.05 1 0 1 0 0 0
.................................................................................................................................................................GGATTATAGTCATTAAGTTTATC. 23 1 20 0.05 1 1 0 0 0 0
..................................................................................TAGTAAGTTATATTTGTAGTAAGA............................................................................... 24 1 20 0.05 1 1 0 0 0 0
.............................................................................................................................................................AATTGGATTATAGTCATTAAA....... 21 1 20 0.05 1 0 0 1 0 0
..................................................................................TAGTAAGTTATATTTGTAGTAA................................................................................. 22 0 20 0.05 1 1 0 0 0 0
.............................................................................................................................................................AATTGGATTATAGTCATTAAGTTT.... 24 0 20 0.05 1 1 0 0 0 0
.......................................................................................................................................TGTAAGATAGTGAAAGGAAAT............................. 21 0 20 0.05 1 0 1 0 0 0
..................................................................................................TAGTAAGTAAGTTGGTTAGTG.................................................................. 21 0 20 0.05 1 0 1 0 0 0
..........................................................................................................AAGTTGGGTAGTGAGGGC............................................................. 18 3 20 0.05 1 0 1 0 0 0
.............................................................................................................................................................AATTGGATTATAGTCATTAAGTTTTAAT 28 2 20 0.05 1 1 0 0 0 0
..........TGGCCTTTTTGCCCACCTTACATATTGCA.................................................................................................................................................. 29 0 20 0.05 1 1 0 0 0 0
.............................................................................................................................................................AATTGGATTATAGTCATTAAGTTTA... 25 0 20 0.05 1 1 0 0 0 0
.............................................................................................................................................................AATTGGAATATAGTCATTAAG....... 21 1 20 0.05 1 0 1 0 0 0
.............................................................................................................................................................AATTGGATTATAGTCATTAAGTTTG... 25 1 20 0.05 1 1 0 0 0 0
..................................................................................TAGTAAGTTATATTTGTAGTA.................................................................................. 21 0 20 0.05 1 1 0 0 0 0
..............................................................................................................................................................ATTGGATTATAGTCATTAAGT...... 21 0 20 0.05 1 1 0 0 0 0
..........................................................................TAAATTAGTAGTAAGTGA............................................................................................. 18 2 20 0.05 1 1 0 0 0 0
.............................................................................................................................................................AGTTGGATTATAGTCATTAAGTTT.... 24 1 20 0.05 1 0 0 1 0 0
.............CCTTTTTGCCCACCTTACATATTGCA.................................................................................................................................................. 26 0 20 0.05 1 1 0 0 0 0
...............................................................................................................................................................TTGGATTATAGTCATTAAG....... 19 0 20 0.05 1 1 0 0 0 0
..................TTGCCCACCTTACATATTGCATTCTA............................................................................................................................................. 26 0 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

ATGACATTCCACCGGAAAAACGGGTGGAATGTATAACGTAAGATCAACAGCTCAAATGACCTCGAACATCACTCATTCAATCATCATTCAATATAAACATCATTCATTCAACCAATCACTCCATATAAGCATCGTACATTCTATCACTTTCCTTTACTTAACCTAATATCAGTAATTCAAATATA
************************************(((((....((((.(((((.((((...(((......((.(((.(((.((.((...........)).))..))).))).)))))..)))).))))))))))))))..........*********************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V041
embryo
 V110
male body
...................................ACGTAAGATCAACAGCTCAAATGAC............................................................................................................................. 25 0 2 16.50 33 32 1 0 0
................................ATAACGTAAGATCAACAGCTCAAATGAC............................................................................................................................. 28 0 2 15.50 31 27 4 0 0
.................................TAACGTAAGATCAACAGCTCAAATGAC............................................................................................................................. 27 0 2 9.00 18 15 3 0 0
..................................AACGTAAGATCAACAGCTCAAATGAC............................................................................................................................. 26 0 2 7.00 14 13 1 0 0
............................................................................................................................................CTATCACTTTCCTTTACTTAACCTAAT.................. 27 0 20 6.80 136 135 0 1 0
....................................CGTAAGATCAACAGCTCAAATGACCTC.......................................................................................................................... 27 0 2 4.00 8 3 5 0 0
.....................................GTAAGATCAACAGCTCAAATGAC............................................................................................................................. 23 0 2 4.00 8 7 1 0 0
....................................CGTAAGATCAACAGCTCAAATGAC............................................................................................................................. 24 0 2 3.50 7 6 1 0 0
...........................................................................................................................................TCTATCACTTTCCTTTACTTAACCTAAT.................. 28 0 20 3.25 65 56 9 0 0
....................................CGTAAGATCAACAGCTCAAATGACCT........................................................................................................................... 26 0 2 3.00 6 1 5 0 0
..............................................................................................AAACATCATTCATTCAACCAATCACT................................................................. 26 0 20 2.25 45 42 3 0 0
................................................................................................................CAATCACTCCATATAAGCATCGTACAT.............................................. 27 0 2 1.50 3 2 1 0 0
...............................................................................................................................................TCACTTTCCTTTACTTAACCTAAT.................. 24 0 20 1.35 27 23 4 0 0
.............................................................................................TAAACATCATTCATTCAACCAATCACT................................................................. 27 0 20 1.15 23 22 1 0 0
...............................TATAACGTAAGATCAACAGCTCAAATGAC............................................................................................................................. 29 0 2 1.00 2 2 0 0 0
............................................................................................................CAACCAATCACTCCATATAAGCATCGT.................................................. 27 0 2 1.00 2 1 1 0 0
...................................ACGTAAGATCAACAGCTCAAATGACCT........................................................................................................................... 27 0 2 1.00 2 2 0 0 0
.................................TAACGTAAGATCAACAGCTCAAATGA.............................................................................................................................. 26 0 2 1.00 2 2 0 0 0
...............................................................GAACATCACTCATTCAATCATCATTCAAT............................................................................................. 29 0 2 1.00 2 1 1 0 0
............................................................................................................................................CTATCACTTTCCTTTACTTAACCTAA................... 26 0 20 0.85 17 15 2 0 0
.............GGAAAAACGGGTGGAATGTAT....................................................................................................................................................... 21 0 20 0.60 12 0 6 6 0
............................................................................................ATAAACATCATTCATTCAACCAATCAC.................................................................. 27 0 20 0.60 12 12 0 0 0
.......................................AAGATCAACAGCTCAAATGACCTC.......................................................................................................................... 24 0 2 0.50 1 1 0 0 0
.................................................................................................................AATCACTCCATATAAGCATCGTACATT............................................. 27 0 2 0.50 1 1 0 0 0
..............................GTATAACGTAAGATCAACAGCTCAAATCG.............................................................................................................................. 29 2 2 0.50 1 1 0 0 0
................................AAAACGTAAGATCAACAGCTCAAATGAC............................................................................................................................. 28 1 2 0.50 1 1 0 0 0
........................................................................................................................CCATATAAGCATCGTACATTCTAT......................................... 24 0 2 0.50 1 0 1 0 0
....................................CGTAAGATCAACAGCTCAAATGA.............................................................................................................................. 23 0 2 0.50 1 1 0 0 0
.................................................................................................CATCATTCATTCAACCAATCACTCCAT............................................................. 27 0 2 0.50 1 0 1 0 0
...............................................................GAACATCACTCATTCAATCATCATTCAA.............................................................................................. 28 0 2 0.50 1 1 0 0 0
....................................................................................................................CACTCCATATAAGCATCGTACATTCT........................................... 26 0 2 0.50 1 0 1 0 0
............................................CAACAGCTCAAATGACCTCGAACAT.................................................................................................................... 25 0 2 0.50 1 1 0 0 0
...................................ACGTAAGATCAACAGATCAAATGAC............................................................................................................................. 25 1 2 0.50 1 1 0 0 0
................................ATAACGTAAGATCAACAGCTCAAATGGC............................................................................................................................. 28 1 2 0.50 1 0 1 0 0
......................................TAAGATCAACAGCTCAAATGAC............................................................................................................................. 22 0 2 0.50 1 1 0 0 0
..........................................ATCAACAGCTCAAATGAC............................................................................................................................. 18 0 2 0.50 1 1 0 0 0
..............................................................CGAACATCACTCATTCAATCATCAT.................................................................................................. 25 0 2 0.50 1 1 0 0 0
...................................ACGTAAGATCAACAGCTCAAATGA.............................................................................................................................. 24 0 2 0.50 1 1 0 0 0
..................................AACGTAAGATCAACAGCTCAAATGA.............................................................................................................................. 25 0 2 0.50 1 1 0 0 0
................................ATAACGTAAGATCAACAGCTCAAAT................................................................................................................................ 25 0 2 0.50 1 0 1 0 0
.............................TGTATAACGTAAGATCAACAGCTCAAAT................................................................................................................................ 28 0 2 0.50 1 0 1 0 0
.....................................GTAAGATCAACAGCTCAAATGACCTC.......................................................................................................................... 26 0 2 0.50 1 1 0 0 0
..................................AACGTAAGATCAACAGCTCAAATGACCTC.......................................................................................................................... 29 0 2 0.50 1 1 0 0 0
........................................AGATCAACAGCTCAAATGACCTC.......................................................................................................................... 23 0 2 0.50 1 0 1 0 0
........................................AGATCAACAGCTCAGATGACCTCGA........................................................................................................................ 25 1 2 0.50 1 1 0 0 0
..................................AACGTAAGATCAACGGCTCAAATGAC............................................................................................................................. 26 1 2 0.50 1 1 0 0 0
...............................................................................................................CCAATCACTCCATATAAGCATCGTACAT.............................................. 28 0 2 0.50 1 1 0 0 0
..............................................................................................................ACCAATCACTCCATATAAGCATCGTACAT.............................................. 29 0 2 0.50 1 1 0 0 0
...............................................................GAACATCACTCATTCAATCATCATT................................................................................................. 25 0 2 0.50 1 1 0 0 0
........................................................................................................................CCATATAAGCATCGTACATTCT........................................... 22 0 2 0.50 1 1 0 0 0
.......................................................ATGACCTCGAACATCACTCATTCAATCAT..................................................................................................... 29 0 2 0.50 1 1 0 0 0
.....................................GTAAGATCAACAGCTCAAATGACCT........................................................................................................................... 25 0 2 0.50 1 1 0 0 0
..............................................................CGAACATCACTCATTCAATCATCATTCAA.............................................................................................. 29 0 2 0.50 1 1 0 0 0
...............................................................GAACATCACTCATTCAATCATCAT.................................................................................................. 24 0 2 0.50 1 1 0 0 0
.................................AAACGTAAGATCAACAGCTCAAATGAC............................................................................................................................. 27 1 2 0.50 1 1 0 0 0
....................................CGTAAGATCAACAGCTCAAAGGACCT........................................................................................................................... 26 1 2 0.50 1 0 1 0 0
...................................ACGTAAGATCAACAGCTCAAAGGAC............................................................................................................................. 25 1 2 0.50 1 1 0 0 0
....................................................CAAATGACCTCGAACATCACTCATT............................................................................................................ 25 0 2 0.50 1 0 1 0 0
....................................CGTAAGATCAACAGCTCAAATGACGG........................................................................................................................... 26 2 2 0.50 1 1 0 0 0
.................................................GCTCAAATGACCTCGAACATCACTCAT............................................................................................................. 27 0 2 0.50 1 1 0 0 0
...........................................................................................................TCAACCAATCACTCCATATAAGCAT..................................................... 25 0 2 0.50 1 1 0 0 0
....................................CGTAAGATCAGCAGCTCAAATGACCT........................................................................................................................... 26 1 2 0.50 1 1 0 0 0
............................................................CTCGAACATCACTCATTCAATCATCATT................................................................................................. 28 0 2 0.50 1 1 0 0 0
.............................................................................................................................................TATCACTTTCCTTTACTTAACCTAAT.................. 26 0 20 0.45 9 0 9 0 0
............................................................................................ATAAACATCATTCATTCAACCAATCACT................................................................. 28 0 20 0.35 7 0 7 0 0
...........................................................................................................................................TCTATCACTTTCCTTTACTTAACCTAA................... 27 0 20 0.35 7 7 0 0 0
..............................................................................................................................................ATCACTTTCCTTTACTTAACCTAA................... 24 0 20 0.35 7 7 0 0 0
....................................CGTAAGACCAACAGCTCAAATGAC............................................................................................................................. 24 1 3 0.33 1 0 1 0 0
.................................CCTCGTAAGATCAACAGCTCAAATGAC............................................................................................................................. 27 3 3 0.33 1 1 0 0 0
.................................CAACGTAAGATCAACAGCTCAAATGAC............................................................................................................................. 27 1 3 0.33 1 0 1 0 0
................................................................AACATCACTCATTCAATCATCATTCAAT............................................................................................. 28 0 20 0.30 6 6 0 0 0
..............................................................................................................................................ATCACTTTCCTTTACTTAACCTAAT.................. 25 0 20 0.25 5 0 5 0 0
............................................................................................................................................CTATCACTTTCCTTTACTTAACCTAATC................. 28 1 20 0.20 4 0 4 0 0
...........................................................................................................................................CCTATCACTTTCCTTTACTTAACCTAAT.................. 28 1 20 0.20 4 0 4 0 0
..................................................................CATCACTCATTCAATCATCATTCAATAT........................................................................................... 28 0 20 0.20 4 4 0 0 0
..............................................................................................AAACATCATTCATTCAACCAATCAC.................................................................. 25 0 20 0.15 3 3 0 0 0
.....................................................................CACTCATTCAATCATCATTCAATAT........................................................................................... 25 0 20 0.15 3 3 0 0 0
............................................................................................................................................CTATCACTTTCCTTTACTTAACCTA.................... 25 0 20 0.15 3 3 0 0 0
...............................................................................................................................................TCACTTTCCTTTACTTAACCTAA................... 23 0 20 0.15 3 3 0 0 0
............................................................................................CTAAACATCATTCATTCAACCAATCACT................................................................. 28 1 20 0.10 2 2 0 0 0
.................................................................................CATCATTCAATATAAACATCATTCATT............................................................................. 27 0 20 0.10 2 2 0 0 0
................................................................................................ACATCATTCATTCAACCAATCACT................................................................. 24 0 20 0.10 2 0 2 0 0
..........................................................................................................................................CTCTATCACTTTCCTTTACTTAACCTAAT.................. 29 1 20 0.10 2 2 0 0 0
.................................................................................................................................................ACTTTCCTTTACTTAACCTAAT.................. 22 0 20 0.10 2 2 0 0 0
..............GAAAAACGGGTGGAATGTAT....................................................................................................................................................... 20 0 20 0.10 2 2 0 0 0
............................................................................................ATAAACATCATTCATTCAACCAATCACTC................................................................ 29 0 20 0.10 2 2 0 0 0
............................................................................................................................................CTATCACTTTCCTTTACTTA......................... 20 0 20 0.10 2 2 0 0 0
................................................................................................................................................CACTTTCCTTTACTTAACCTAAT.................. 23 0 20 0.10 2 0 2 0 0
............................................................................................................................................CTATCACTTTCCTTTGCTTAACCTAAT.................. 27 1 20 0.10 2 2 0 0 0
.............GGAAAAACGGGTGGAATGTGT....................................................................................................................................................... 21 1 20 0.10 2 0 2 0 0
............................................................................................................................................CTATCACTTTCCTTTACTTAA........................ 21 0 20 0.10 2 0 2 0 0
............................................................................TCAATCATCATTCAATATAAACATCAT.................................................................................. 27 0 15 0.07 1 1 0 0 0
.......................................................................................TCAATATAAACATCATTCATTCAACC........................................................................ 26 0 20 0.05 1 1 0 0 0
............................................................................................................................................CTATCACTTTCCTTTACTTCACCTAAT.................. 27 1 20 0.05 1 1 0 0 0
............................................................CTCCAACATCACTCATTCAATCATCATT................................................................................................. 28 1 20 0.05 1 1 0 0 0
............................................................................................................................................CTATCACTTTCCTTTACTTC......................... 20 1 20 0.05 1 0 1 0 0
............................................................................................................................................CTATCACTTTCCTTTACTTAACCTAAGC................. 28 2 20 0.05 1 0 1 0 0
...................................................................................................TCATTCATTCAACCAATCACT................................................................. 21 0 20 0.05 1 0 1 0 0
..............AAAAAACGGGTGGAATGTAT....................................................................................................................................................... 20 1 20 0.05 1 0 0 1 0
............................................................................................................................................CTATCACTTTCCTTTAATTAACCTAAT.................. 27 1 20 0.05 1 0 1 0 0
.............................................................................................................................................TATCACTTTCCTTTACTTAACC...................... 22 0 20 0.05 1 0 1 0 0
...............................................................................................................................................CCACTTTCCTTTACTTAACCTAAT.................. 24 1 20 0.05 1 0 1 0 0
....................................................................TCACTCATTCAATCATCATTCAAT............................................................................................. 24 0 20 0.05 1 0 1 0 0
......................................................................................................TTCATTCAACCAATCACT................................................................. 18 0 20 0.05 1 1 0 0 0
............................................................................................................................................CTACCACTTTCCTTTACTTAACCTAAT.................. 27 1 20 0.05 1 1 0 0 0
................................................................................TCATCATTCAATATAAACATCATT................................................................................. 24 0 20 0.05 1 1 0 0 0
....................................................................................................CATTCATTCAACCAATCA................................................................... 18 0 20 0.05 1 0 1 0 0
.................................................................................CATCATTCAATATAAACATCATTCAT.............................................................................. 26 0 20 0.05 1 1 0 0 0
................................................................................................TTATCATTCATTCAACCAATCACT................................................................. 24 2 20 0.05 1 1 0 0 0
..............................................................................................AAACATCATTCATTCAACCAATCA................................................................... 24 0 20 0.05 1 1 0 0 0
...........................................................................................................................................TCTATCACTTTCCTTTACTTAA........................ 22 0 20 0.05 1 1 0 0 0
............................................................................................................................................ATATCACTTTCCTTTACTTGA........................ 21 2 20 0.05 1 0 1 0 0
............CGGAAAAACGGGTGGAATGTAT....................................................................................................................................................... 22 0 20 0.05 1 1 0 0 0
........................................................................................................................TCAAATAAGCATCATACATT............................................. 20 3 20 0.05 1 1 0 0 0
.............................................................................................TAAACATCATTCATTCAACCAATC.................................................................... 24 0 20 0.05 1 0 1 0 0
................................................................................TCATCATTCAATATAAACATCATTCATT............................................................................. 28 0 20 0.05 1 0 1 0 0
.............................................................................................................................................CATCACTTTCCTTTACTTAACCTAAT.................. 26 1 20 0.05 1 0 1 0 0
.................................................................ACATCACTCATTGAATCATCATTC................................................................................................ 24 1 20 0.05 1 1 0 0 0
....................................................................TCACTCATTCAATCATCATTCAATAT........................................................................................... 26 0 20 0.05 1 0 1 0 0
...............................................................................................................................................TCACTTTCCTTTACTTCACCTAGT.................. 24 2 20 0.05 1 0 1 0 0
..........................................................................................................................................TTCTATCACTTTCCTTTACTTAACCTAAT.................. 29 0 20 0.05 1 0 1 0 0
..........................................................................................ATATAAACATCATTCATTCAACCAAT..................................................................... 26 0 20 0.05 1 1 0 0 0
...............................................................................................AACATCATTCATTCAACCAATCACTT................................................................ 26 1 20 0.05 1 1 0 0 0
............................................................................................................................................CTATCACTTTCCTTTACCTA......................... 20 1 20 0.05 1 0 1 0 0
............................................................................................................................................CTATCACTTTCCTTTACTTAACC...................... 23 0 20 0.05 1 1 0 0 0
............................................................................................................................................CTATCACTTTCCTTCACTTAACCTAAT.................. 27 1 20 0.05 1 0 1 0 0
............................................................................................................................................CTATCACTTTCCTTTACTTAACCAAAT.................. 27 1 20 0.05 1 0 1 0 0
........CCACCGGAAAAACGGGTGGAATGTAT....................................................................................................................................................... 26 0 20 0.05 1 0 1 0 0
................................................................................................ACATCATTCATTCAACCAATCAC.................................................................. 23 0 20 0.05 1 1 0 0 0
.........CACCGGAAAAACGGGTGGAATGTAT....................................................................................................................................................... 25 0 20 0.05 1 0 1 0 0
.............................................................................................................................................TATCACTTTCCTTTACTTAACCTTAT.................. 26 1 20 0.05 1 1 0 0 0
............................................................................................................................................CTATCACTTTCCTTTACTTAACCTGAT.................. 27 1 20 0.05 1 1 0 0 0
.............GGAAAAACGCATGGAATGTAT....................................................................................................................................................... 21 2 20 0.05 1 0 0 1 0
............................................................................................................................................CTATCACTTTCCTTTAATTCACCTAAT.................. 27 2 20 0.05 1 0 1 0 0
............................................................................................ATAAACATCATTCATTCAACCAATCA................................................................... 26 0 20 0.05 1 1 0 0 0
............................................................................................................................................CTATCACTTTCCTTTACT........................... 18 0 20 0.05 1 0 1 0 0
..............................................................................................................................................ATCACTTTCCTTTACTTAACCTAATA................. 26 0 20 0.05 1 0 1 0 0
..............................................................................................................................................TTACCTTTCCTTTACTTAACCTAAT.................. 25 3 20 0.05 1 0 1 0 0
.............................................................................................................................................CATCACTTTCCTTTACTTAACCTAGT.................. 26 2 20 0.05 1 0 1 0 0
.............................................................................................................................................TATCACTTTCCTTTACTTCACCTAAT.................. 26 1 20 0.05 1 0 1 0 0
.............AGAAAAACGGGTGGAATGTAT....................................................................................................................................................... 21 1 20 0.05 1 1 0 0 0
..................TACGGGTGGAATGTATAACGTAAGAT............................................................................................................................................. 26 1 20 0.05 1 0 1 0 0
.................................................................ACATCACTCATTCAATCATCATTCAAG............................................................................................. 27 1 20 0.05 1 1 0 0 0
..............................................................................................................................................ATCACTTTCCTTTACTTAAC....................... 20 0 20 0.05 1 0 1 0 0
...........AAGGAAAAACGGGGGGAATGTAT....................................................................................................................................................... 23 3 20 0.05 1 0 0 1 0
..............................................................................................CAACATCATTCATTCAACCAATCACT................................................................. 26 1 20 0.05 1 1 0 0 0
............................................................................................................................................CTATCACTTTCCTTTACTGA......................... 20 1 20 0.05 1 0 1 0 0
.............................................................................................................................................TATCACTTTCCTTTACTTAACCTATT.................. 26 1 20 0.05 1 0 1 0 0
..........AAAGGAAAAACGGGTGGAATGTAT....................................................................................................................................................... 24 2 20 0.05 1 0 0 0 1
............CGGAAAAACGGGTGGAATGTATAACGT.................................................................................................................................................. 27 0 20 0.05 1 1 0 0 0
...............................................................................................................................................TCACTTTCCTTTACTTAACCTAATA................. 25 0 20 0.05 1 1 0 0 0
............................................................................................ATAAACATCATTCATTCAACCAATCAGT................................................................. 28 1 20 0.05 1 0 1 0 0
................................................................................TCATCATTCAATATAAACATCAT.................................................................................. 23 0 20 0.05 1 1 0 0 0
.....................................................................CACTCATTCAATCATCATTCAGT............................................................................................. 23 1 20 0.05 1 0 1 0 0
...............................................................................................................................................CCACTTTCCTTTACTTAACCTAAC.................. 24 2 20 0.05 1 0 1 0 0
.........................................................................................AATATAAACATCATTCATTCAACCAAT..................................................................... 27 0 20 0.05 1 1 0 0 0
............................................................................................................................................CTATGACTTTCCTTTACTTAACCTAA................... 26 1 20 0.05 1 1 0 0 0
..............................................................................................................................................................TAACCTAATATCAGTAATTCAAATATA 27 0 20 0.05 1 1 0 0 0
....................................CGTAAGATCGACAGCTCAAATGACCTAG......................................................................................................................... 28 2 20 0.05 1 0 1 0 0
........................................................................................CAATATAAACATCATTCATTCAACCAATC.................................................................... 29 0 20 0.05 1 0 1 0 0
.............................................................................................................................................CATCACTTTCCTTTACTTAACCTA.................... 24 1 20 0.05 1 0 1 0 0
............................................................................................................................................CTATCACTTTCCTTTACTTAACCTAATA................. 28 0 20 0.05 1 0 1 0 0
...............AGAAACGGGCGGAATGTAT....................................................................................................................................................... 19 2 20 0.05 1 0 0 1 0
............................................................................................................................................CTATCACTTTCCTTTACTTAACCGAAT.................. 27 1 20 0.05 1 0 1 0 0
..............................................................................................................................................ATCACTTTCCTTTACTTAA........................ 19 0 20 0.05 1 1 0 0 0
.......................................................................................TCAATATAAACATCATTCATTCAACCAAT..................................................................... 29 0 20 0.05 1 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6500:32232032-32232216 + dmo_163 TACTGTAAGGTGGCCTTTTTGCCCACCTTACATATTGCATTCTAGTTGTCGAGTTTACTGGAGCTTGTAGTGAGTAAGTTAGTAGTAAGTTATATTTGTAGTAAGTAAGTTGGTTAGTGAGGTATATTCGTAGCATGTAAGATAGTGAAAGGAAATGAATTGGATTATAGTCATTAAGTTTATAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
TACTGTAAGGTGGCCTTTTTGCCCACCTTACATATTGCATTCTAGTTGTCGAGTTTACTGGAGCTTGTAGTGAGTAAGTTAGTAGTAAGTTATATTTGTAGTAAGTAAGTTGGTTAGTGAGGTATATTCGTAGCATGTAAGATAGTGAAAGGAAATGAATTGGATTATAGTCATTAAGTTTATATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................................................................................................TGGTTAGTGAGGTATATTCGTAGC...................................................2425.5011620003
..................................................GAGTTTACTGGAGCTTGTAGTGAGT..............................................................................................................2523.507500020
..................................................GAGTTTACTGGAGCTTGTAGTGAG...............................................................................................................2422.004400000
..................................................GAGTTTACTGGAGCTTGTAGTGA................................................................................................................2321.503300000
.............................................................................................................................................................AATTGGATTATAGTCATTAAGT......22201.30262500010
..............................................................................................................TGGTTAGTGAGGTATATTCGTAGCA..................................................2521.002200000
..............................................................................................................TGGTTAGTGAGGTATATTCGTAG....................................................2321.002200000
..............................................................................................................TGGTTAGTGAGGTATATTCGTAGCATG................................................2721.002200000
..................................................GAGTTTACTGGAGCTTGTAGTG.................................................................................................................2220.501100000
....................................................GTTTACTGGAGCTTGTAGTGA................................................................................................................2120.501000001
.................................................................................................................TTAGTGAGGTATATTCGTAGC...................................................2120.501100000
.....................................................TTTACTGGAGCTTGTAGTGAGTAA............................................................................................................2420.501100000
...................................................AGTTTACTGGAGCTTGTAGTGAG...............................................................................................................2320.501100000
.....................................................................................................TAAGTAAGTTGGTTAGTGAGG...............................................................2120.501000010
..................................................GAGTTTACTGGAGCTTGTAGTGAGTAA............................................................................................................2720.501100000
..................................................GAGTTTACTGGAGCTTGTAGT..................................................................................................................2120.501100000
.....................................................TTTACTGGAGCTTGTAGTGA................................................................................................................2020.501100000
....................................................GTTTACTGGAGCTTGTAGTGAGT..............................................................................................................2320.501000010
...............................................................................................................GGTTAGTGAGGTATATTCGTAG....................................................2220.501100000
....................................................GTTTACTGGAGCTTGTAGTGAGTA.............................................................................................................2420.501100000
.................................................................................................................TTAGTGAGGTATATTCGTAGCAT.................................................2320.501100000
....................................................GTTTACTGGAGCTTGTAGTGAGTAAG...........................................................................................................2620.501100000
.............................................................................................................................................................AATTGGATTATAGTCATTAAG.......21200.408500111
............GCCTTTTTGCCCACCTTACATATTGCA..................................................................................................................................................27200.204400000
.............................................................................................................................................................AATTGGATTATAGTCATTAAGTT.....23200.153300000
.............................................................................................................................................................AATTGGATTATAGTCATTAAGTTTATAT28200.153300000
............GCCTTTTTGCCCACCTTACATATTGC...................................................................................................................................................26200.102200000
..............................................................................................................................................................ATTGGATTATAGTCATTAAG.......20200.102200000
.............................................................................................................................................................AATTGGATTATAGTCATTAAGTC.....23200.102100001
............GCCTTTTTGCCCACCTTACATATTG....................................................................................................................................................25200.102200000
..........................................................................................................................TATATTCGTAGCATGTAAGATAG........................................23150.071100000
...........................................................................................................................ATATTCGTAGCATGTAAGATAGTG......................................24150.071100000
...................................................................................................AGTAAGTAAGTTGGTTAGTG..................................................................20200.051100000
.............................................................................................................................................................AATTGGATTATAGTCATTAAGTTTAT..26200.051100000
.......................................................................GAGTAAGTTAGTAGTAAGTTA.............................................................................................21200.051000001
.................................................................................................................................................................GGATTATAGTCATTAAGTTTATC.23200.051100000
..................................................................................TAGTAAGTTATATTTGTAGTAAGA...............................................................................24200.051100000
.............................................................................................................................................................AATTGGATTATAGTCATTAAA.......21200.051000010
..................................................................................TAGTAAGTTATATTTGTAGTAA.................................................................................22200.051100000
.............................................................................................................................................................AATTGGATTATAGTCATTAAGTTT....24200.051100000
.......................................................................................................................................TGTAAGATAGTGAAAGGAAAT.............................21200.051000001
..................................................................................................TAGTAAGTAAGTTGGTTAGTG..................................................................21200.051000001
..........TGGCCTTTTTGCCCACCTTACATATTGCA..................................................................................................................................................29200.051100000
.............................................................................................................................................................AATTGGATTATAGTCATTAAGTTTA...25200.051100000
.............................................................................................................................................................AATTGGATTATAGTCATTAAGTTTG...25200.051100000
..................................................................................TAGTAAGTTATATTTGTAGTA..................................................................................21200.051100000
..............................................................................................................................................................ATTGGATTATAGTCATTAAGT......21200.051100000
.............CCTTTTTGCCCACCTTACATATTGCA..................................................................................................................................................26200.051100000
...............................................................................................................................................................TTGGATTATAGTCATTAAG.......19200.051100000
..................TTGCCCACCTTACATATTGCATTCTA.............................................................................................................................................26200.051100000

Generated: 05/15/2015 at 02:39 PM