ID:

dmo_162

 Coordinate:

scaffold_6500:32240440-32240524 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-15.1 -14.9 -14.7

Flybase annnotation

intergenic

No Repeatable elements found

mature
  1. dmo_163  scaffold_6500:32232142-32232165 +
  2. dmo_162  scaffold_6500:32240500-32240523 +
star
  1. dmo_163  scaffold_6500:32232082-32232106 +
  2. dmo_162  scaffold_6500:32240440-32240464 +

Sense Strand Reads

GGGTGTAAGGTGGCCTTTTTGCCCACCTTACATATTGCATTCTAGTTGTCGAGTTTACTGGAGCTTGTAGTGAGTAAGTTAGTAGTAAGTTATATTTGTAGTAAGTAAGTTGGTTAGTGAGGTATATTCGTAGCATGTAAGATAGTGAAAGGAAATGAATTGGATTATAGTCATTAAGTTTATAT
***********************************(((((....((((.(((((.((((...(((......((.(((.(((.((.((...........)).))..))).))).)))))..)))).))))))))))))))..........************************************ 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V110
male body		 M060
embryo
 V041
embryo
 V056
head
..............................................................................................................TGGTTAGTGAGGTATATTCGTAGC................................................... 24 0 2 5.50 11 6 3 0 2 0
..................................................GAGTTTACTGGAGCTTGTAGTGAGT.............................................................................................................. 25 0 2 3.50 7 5 0 2 0 0
..................................................GAGTTTACTGGAGCTTGTAGTGAG............................................................................................................... 24 0 2 2.00 4 4 0 0 0 0
..................................................GAGTTTACTGGAGCTTGTAGTGA................................................................................................................ 23 0 2 1.50 3 3 0 0 0 0
.............................................................................................................................................................AATTGGATTATAGTCATTAAGT...... 22 0 20 1.30 26 25 0 1 0 0
...............................................................CATGATGTGAGTAAGTTAG....................................................................................................... 19 3 20 1.10 22 0 22 0 0 0
..............................................................................................................TGGTTAGTGAGGTATATTCGTAGCATG................................................ 27 0 2 1.00 2 2 0 0 0 0
..............................................................................................................TGGTTAGTGAGGTATATTCGTAGCA.................................................. 25 0 2 1.00 2 2 0 0 0 0
..............................................................................................................TGGTTAGTGAGGTATATTCGTAG.................................................... 23 0 2 1.00 2 2 0 0 0 0
.....................................................TTTACTGGAGCTTGTAGTGAGTAA............................................................................................................ 24 0 2 0.50 1 1 0 0 0 0
...................................................GAGTTACTGGAGCTTGTAGTGAG............................................................................................................... 23 3 2 0.50 1 0 1 0 0 0
..................................................GAGTTTACTGGAGCTTGTAGT.................................................................................................................. 21 0 2 0.50 1 1 0 0 0 0
....................................................GTTTACTGGAGCTTGTAGTGA................................................................................................................ 21 0 2 0.50 1 0 1 0 0 0
....................................................GTTTACTGGAGCTTGTAGTGAGTA............................................................................................................. 24 0 2 0.50 1 1 0 0 0 0
...............................................................................................................GGTTAGTGAGGTATATTCGTAG.................................................... 22 0 2 0.50 1 1 0 0 0 0
.....................................................................................................TAAGTAAGTTGGTTAGTGAGG............................................................... 21 0 2 0.50 1 0 0 1 0 0
..................................................GGGTTTACTGGAGCTTGTAGTGAGT.............................................................................................................. 25 1 2 0.50 1 0 0 1 0 0
.................................................................................................................TTAGTGAGGTATATTCGTAGCAT................................................. 23 0 2 0.50 1 1 0 0 0 0
...................................................AGTTTACTGGAGCTTGTAGTGAG............................................................................................................... 23 0 2 0.50 1 1 0 0 0 0
....................................................GTTTACTGGAGCTTGTAGTGAGT.............................................................................................................. 23 0 2 0.50 1 0 0 1 0 0
...................................................................................................................ATTGAGGTATATTCGTAGC................................................... 19 1 2 0.50 1 0 0 1 0 0
.....................................................TTTACTGGAGCTTGTAGTGA................................................................................................................ 20 0 2 0.50 1 1 0 0 0 0
....................................................GTTTACTGGAGCTTGTAGTGAGTAAG........................................................................................................... 26 0 2 0.50 1 1 0 0 0 0
..............................................................................................................TGGTTAGTGAGGTATATTCCTAGCA.................................................. 25 1 2 0.50 1 0 1 0 0 0
.....................................................................................................TAAGCAACTTGGTTAGTGAGG............................................................... 21 2 2 0.50 1 0 0 0 0 1
..................................................GAGTTTACTGGAGCTTGTAGTG................................................................................................................. 22 0 2 0.50 1 1 0 0 0 0
..................................................GAGTTTACTGGAGCTTGTAGTGAGTAA............................................................................................................ 27 0 2 0.50 1 1 0 0 0 0
.................................................................................................................TTAGTGAGGTATATTCGTAGC................................................... 21 0 2 0.50 1 1 0 0 0 0
..............................................................................................................TGGTTAGTGAGGTATATTTGTAGCA.................................................. 25 1 2 0.50 1 1 0 0 0 0
.............................................................................................................................................................AATTGGATTATAGTCATTAAG....... 21 0 20 0.35 7 5 1 0 0 1
.........................................................................GTAAATTAGTAGTAAGTGA............................................................................................. 19 2 20 0.30 6 3 3 0 0 0
............GCCTTTTTGCCCACCTTACATATTGCA.................................................................................................................................................. 27 0 20 0.20 4 4 0 0 0 0
.....................................................................................................................TGAAGTATATACGTGGCATGT............................................... 21 3 6 0.17 1 0 0 0 0 1
.............................................................................................................................................................AATTGGATTATAGTCATTAAGTT..... 23 0 20 0.15 3 3 0 0 0 0
.............................................................................................................................................................AATTGGATTATAGTCATTAAGTTTATAT 28 0 20 0.15 3 3 0 0 0 0
..............................................................................................................................................................ATTGGATTATAGTCATTAAG....... 20 0 20 0.10 2 2 0 0 0 0
............GCCTTTTTGCCCACCTTACATATTG.................................................................................................................................................... 25 0 20 0.10 2 2 0 0 0 0
.............................................................................................................................................................AATTGGATTATAGTCATTAAGTC..... 23 1 20 0.10 2 1 1 0 0 0
..........................................................................................................................TATATTCGTAGCATGTAAGATAG........................................ 23 0 15 0.07 1 1 0 0 0 0
...........................................................................................................................ATATTCGTAGCATGTAAGATAGTG...................................... 24 0 15 0.07 1 1 0 0 0 0
.............................................................................................................................................................AATTGGATTATAGTCATTAAGTTT.... 24 0 20 0.05 1 1 0 0 0 0
..............................................................................................................................................................ATTGGATTATAGTCATTAAGT...... 21 0 20 0.05 1 1 0 0 0 0
..........................................................................................................AAGTTGGGTAGTGAGGGC............................................................. 18 3 20 0.05 1 0 1 0 0 0
.............................................................................................................................................................AATTGGATTATAGTCATTAAGTTTAT.. 26 0 20 0.05 1 1 0 0 0 0
.............................................................................................................................................................AATTGGATTATAGTCATTAAGTTTG... 25 1 20 0.05 1 1 0 0 0 0
..................................................................................TAGTAAGTTATATTTGTAGTAAGA............................................................................... 24 1 20 0.05 1 1 0 0 0 0
.............................................................................................................................................................AATTGGAATATAGTCATTAAG....... 21 1 20 0.05 1 0 1 0 0 0
.............................................................................................................................................................AATTGGATTATAGTCATTAAGTTTTAAT 28 2 20 0.05 1 1 0 0 0 0
.................................................................................................................................................................GGATTATAGTCATTAAGTTTATC. 23 1 20 0.05 1 1 0 0 0 0
.............................................................................................................................................................AATTGGATTATAGTCATTAAA....... 21 1 20 0.05 1 0 0 1 0 0
..........TGGCCTTTTTGCCCACCTTACATAT...................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0
..................................................................................TAGTAAGTTATATTTGTAGTAA................................................................................. 22 0 20 0.05 1 1 0 0 0 0
...................................................................................................AGTAAGTAAGTTGGTTAGTG.................................................................. 20 0 20 0.05 1 1 0 0 0 0
..........TGGCCTTTTTGCCCACCTTACATATTGCA.................................................................................................................................................. 29 0 20 0.05 1 1 0 0 0 0
.......................................................................................................................................TGTAAGATAGTGAAAGGAAAT............................. 21 0 20 0.05 1 0 1 0 0 0
.............................................................................................................................................................AGTTGGATTATAGTCATTAAGTTT.... 24 1 20 0.05 1 0 0 1 0 0
..................................................................................................TAGTAAGTAAGTTGGTTAGTG.................................................................. 21 0 20 0.05 1 0 1 0 0 0
..................TTGCCCACCTTACATATTGCATTCTA............................................................................................................................................. 26 0 20 0.05 1 1 0 0 0 0
...............................................................................................................................................................TTGGATTATAGTCATTAAG....... 19 0 20 0.05 1 1 0 0 0 0
............................................................................................................................................................CAATTGGATTATAGTCATTAAGT...... 23 1 20 0.05 1 1 0 0 0 0
..........................................................................TAAATTAGTAGTAAGTGA............................................................................................. 18 2 20 0.05 1 1 0 0 0 0
........................................................................................................GTAAGTGGTTTCGTGAGG............................................................... 18 3 20 0.05 1 0 1 0 0 0
..................................................................................TAGTAAGTTATATTTGTAGTA.................................................................................. 21 0 20 0.05 1 1 0 0 0 0
.............................................................................................................................................................AATTGGATTATAGTCATTAAGTTTA... 25 0 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

CCCACATTCCACCGGAAAAACGGGTGGAATGTATAACGTAAGATCAACAGCTCAAATGACCTCGAACATCACTCATTCAATCATCATTCAATATAAACATCATTCATTCAACCAATCACTCCATATAAGCATCGTACATTCTATCACTTTCCTTTACTTAACCTAATATCAGTAATTCAAATATA
************************************(((((....((((.(((((.((((...(((......((.(((.(((.((.((...........)).))..))).))).)))))..)))).))))))))))))))..........*********************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V041
embryo
 V110
male body
...................................ACGTAAGATCAACAGCTCAAATGAC............................................................................................................................. 25 0 2 16.50 33 32 1 0 0
................................ATAACGTAAGATCAACAGCTCAAATGAC............................................................................................................................. 28 0 2 15.50 31 27 4 0 0
.................................TAACGTAAGATCAACAGCTCAAATGAC............................................................................................................................. 27 0 2 9.00 18 15 3 0 0
..................................AACGTAAGATCAACAGCTCAAATGAC............................................................................................................................. 26 0 2 7.00 14 13 1 0 0
............................................................................................................................................CTATCACTTTCCTTTACTTAACCTAAT.................. 27 0 20 6.80 136 135 0 1 0
....................................CGTAAGATCAACAGCTCAAATGACCTC.......................................................................................................................... 27 0 2 4.00 8 3 5 0 0
.....................................GTAAGATCAACAGCTCAAATGAC............................................................................................................................. 23 0 2 4.00 8 7 1 0 0
............................................................................................ATAAACATCATTCATTCAACCAATCACT................................................................. 28 0 20 3.90 78 71 7 0 0
....................................CGTAAGATCAACAGCTCAAATGAC............................................................................................................................. 24 0 2 3.50 7 6 1 0 0
....................................CGTAAGATCAACAGCTCAAATGACCT........................................................................................................................... 26 0 2 3.00 6 1 5 0 0
................................................................................................................CAATCACTCCATATAAGCATCGTACAT.............................................. 27 0 2 1.50 3 2 1 0 0
...............................................................................................................................................TCACTTTCCTTTACTTAACCTAAT.................. 24 0 20 1.35 27 23 4 0 0
.............................................................................................TAAACATCATTCATTCAACCAATCACT................................................................. 27 0 20 1.10 22 22 0 0 0
...................................ACGTAAGATCAACAGCTCAAATGACCT........................................................................................................................... 27 0 2 1.00 2 2 0 0 0
...............................................................GAACATCACTCATTCAATCATCATTCAAT............................................................................................. 29 0 2 1.00 2 1 1 0 0
...............................TATAACGTAAGATCAACAGCTCAAATGAC............................................................................................................................. 29 0 2 1.00 2 2 0 0 0
............................................................................................................CAACCAATCACTCCATATAAGCATCGT.................................................. 27 0 2 1.00 2 1 1 0 0
.................................TAACGTAAGATCAACAGCTCAAATGA.............................................................................................................................. 26 0 2 1.00 2 2 0 0 0
............................................................................................................................................CTATCACTTTCCTTTACTTAACCTAA................... 26 0 20 0.85 17 15 2 0 0
............................................................................................ATAAACATCATTCATTCAACCAATCAC.................................................................. 27 0 20 0.60 12 12 0 0 0
.....................................GTAAGATCAACAGCTCAAATGACCT........................................................................................................................... 25 0 2 0.50 1 1 0 0 0
.................................AAACGTAAGATCAACAGCTCAAATGAC............................................................................................................................. 27 1 2 0.50 1 1 0 0 0
................................ATAACGTAAGATCAACAGCTCAAAT................................................................................................................................ 25 0 2 0.50 1 0 1 0 0
.......................................AAGATCAACAGCTCAAATGACCTC.......................................................................................................................... 24 0 2 0.50 1 1 0 0 0
..................................AACGTAAGATCAACAGCTCAAATGA.............................................................................................................................. 25 0 2 0.50 1 1 0 0 0
..................................AACGTAAGATCAACAGCTCAAATGACCTC.......................................................................................................................... 29 0 2 0.50 1 1 0 0 0
...................................ACGTAAGATCAACAGCTCAAATGA.............................................................................................................................. 24 0 2 0.50 1 1 0 0 0
........................................................................................................................CCATATAAGCATCGTACATTCT........................................... 22 0 2 0.50 1 1 0 0 0
..............................................................................................................ACCAATCACTCCATATAAGCATCGTACAT.............................................. 29 0 2 0.50 1 1 0 0 0
...................................ACGTAAGATCAACAGCTCAAAGGAC............................................................................................................................. 25 1 2 0.50 1 1 0 0 0
........................................AGATCAACAGCTCAGATGACCTCGA........................................................................................................................ 25 1 2 0.50 1 1 0 0 0
...............................................................................................................CCAATCACTCCATATAAGCATCGTACAT.............................................. 28 0 2 0.50 1 1 0 0 0
.....................................GTAAGATCAACAGCTCAAATGACCTC.......................................................................................................................... 26 0 2 0.50 1 1 0 0 0
......................................TAAGATCAACAGCTCAAATGAC............................................................................................................................. 22 0 2 0.50 1 1 0 0 0
....................................CGTAAGATCAGCAGCTCAAATGACCT........................................................................................................................... 26 1 2 0.50 1 1 0 0 0
....................................CGTAAGATCAACAGCTCAAAGGACCT........................................................................................................................... 26 1 2 0.50 1 0 1 0 0
.................................................GCTCAAATGACCTCGAACATCACTCAT............................................................................................................. 27 0 2 0.50 1 1 0 0 0
............................................CAACAGCTCAAATGACCTCGAACAT.................................................................................................................... 25 0 2 0.50 1 1 0 0 0
........................................AGATCAACAGCTCAAATGACCTC.......................................................................................................................... 23 0 2 0.50 1 0 1 0 0
..............................................................CGAACATCACTCATTCAATCATCAT.................................................................................................. 25 0 2 0.50 1 1 0 0 0
..................................AACGTAAGATCAACGGCTCAAATGAC............................................................................................................................. 26 1 2 0.50 1 1 0 0 0
..............................GTATAACGTAAGATCAACAGCTCAAATCG.............................................................................................................................. 29 2 2 0.50 1 1 0 0 0
....................................................CAAATGACCTCGAACATCACTCATT............................................................................................................ 25 0 2 0.50 1 0 1 0 0
................................AAAACGTAAGATCAACAGCTCAAATGAC............................................................................................................................. 28 1 2 0.50 1 1 0 0 0
...............................................................GAACATCACTCATTCAATCATCAT.................................................................................................. 24 0 2 0.50 1 1 0 0 0
...............................................................GAACATCACTCATTCAATCATCATT................................................................................................. 25 0 2 0.50 1 1 0 0 0
.............................TGTATAACGTAAGATCAACAGCTCAAAT................................................................................................................................ 28 0 2 0.50 1 0 1 0 0
........................................................................................................................CCATATAAGCATCGTACATTCTAT......................................... 24 0 2 0.50 1 0 1 0 0
.................................................................................................................AATCACTCCATATAAGCATCGTACATT............................................. 27 0 2 0.50 1 1 0 0 0
....................................CGTAAGATCAACAGCTCAAATGA.............................................................................................................................. 23 0 2 0.50 1 1 0 0 0
.................................................................................................CATCATTCATTCAACCAATCACTCCAT............................................................. 27 0 2 0.50 1 0 1 0 0
....................................................................................................................CACTCCATATAAGCATCGTACATTCT........................................... 26 0 2 0.50 1 0 1 0 0
...................................ACGTAAGATCAACAGATCAAATGAC............................................................................................................................. 25 1 2 0.50 1 1 0 0 0
..............................................................CGAACATCACTCATTCAATCATCATTCAA.............................................................................................. 29 0 2 0.50 1 1 0 0 0
...............................................................GAACATCACTCATTCAATCATCATTCAA.............................................................................................. 28 0 2 0.50 1 1 0 0 0
...........................................................................................................TCAACCAATCACTCCATATAAGCAT..................................................... 25 0 2 0.50 1 1 0 0 0
................................ATAACGTAAGATCAACAGCTCAAATGGC............................................................................................................................. 28 1 2 0.50 1 0 1 0 0
..........................................ATCAACAGCTCAAATGAC............................................................................................................................. 18 0 2 0.50 1 1 0 0 0
....................................CGTAAGATCAACAGCTCAAATGACGG........................................................................................................................... 26 2 2 0.50 1 1 0 0 0
.......................................................ATGACCTCGAACATCACTCATTCAATCAT..................................................................................................... 29 0 2 0.50 1 1 0 0 0
............................................................CTCGAACATCACTCATTCAATCATCATT................................................................................................. 28 0 2 0.50 1 1 0 0 0
.............................................................................................................................................TATCACTTTCCTTTACTTAACCTAAT.................. 26 0 20 0.45 9 0 9 0 0
...........................................................................................................................................TCTATCACTTTCCTTTACTTAACCTAAT.................. 28 0 20 0.45 9 0 9 0 0
...........................................................................................................................................TCTATCACTTTCCTTTACTTAACCTAA................... 27 0 20 0.40 8 7 1 0 0
..............................................................................................................................................ATCACTTTCCTTTACTTAACCTAA................... 24 0 20 0.35 7 7 0 0 0
.................................CAACGTAAGATCAACAGCTCAAATGAC............................................................................................................................. 27 1 3 0.33 1 0 1 0 0
....................................CGTAAGACCAACAGCTCAAATGAC............................................................................................................................. 24 1 3 0.33 1 0 1 0 0
.................................CCTCGTAAGATCAACAGCTCAAATGAC............................................................................................................................. 27 3 3 0.33 1 1 0 0 0
................................................................AACATCACTCATTCAATCATCATTCAAT............................................................................................. 28 0 20 0.30 6 6 0 0 0
.............GGAAAAACGGGTGGAATGTAT....................................................................................................................................................... 21 0 20 0.30 6 0 6 0 0
..............................................................................................................................................ATCACTTTCCTTTACTTAACCTAAT.................. 25 0 20 0.25 5 0 5 0 0
..................................................................CATCACTCATTCAATCATCATTCAATAT........................................................................................... 28 0 20 0.20 4 4 0 0 0
............................................................................................................................................CTATCACTTTCCTTTACTTAACCTAATC................. 28 1 20 0.20 4 0 4 0 0
...........................................................................................................................................CCTATCACTTTCCTTTACTTAACCTAAT.................. 28 1 20 0.20 4 0 4 0 0
..............................................................................................AAACATCATTCATTCAACCAATCACT................................................................. 26 0 20 0.15 3 0 3 0 0
...............................................................................................................................................TCACTTTCCTTTACTTAACCTAA................... 23 0 20 0.15 3 3 0 0 0
............................................................................................................................................CTATCACTTTCCTTTACTTAACCTA.................... 25 0 20 0.15 3 3 0 0 0
.CCACATTCCACCGGAAAAACGGGT................................................................................................................................................................ 24 0 20 0.15 3 0 3 0 0
..............................................................................................AAACATCATTCATTCAACCAATCAC.................................................................. 25 0 20 0.15 3 3 0 0 0
.................................................................................CATCATTCAATATAAACATCATTCATT............................................................................. 27 0 20 0.10 2 2 0 0 0
............................................................................................................................................CTATCACTTTCCTTTACTTA......................... 20 0 20 0.10 2 2 0 0 0
............................................................................................................................................CTATCACTTTCCTTTGCTTAACCTAAT.................. 27 1 20 0.10 2 2 0 0 0
..........................................................................................................................................CTCTATCACTTTCCTTTACTTAACCTAAT.................. 29 1 20 0.10 2 2 0 0 0
............................................................................................ATAAACATCATTCATTCAACCAATCACTC................................................................ 29 0 20 0.10 2 2 0 0 0
............................................................................................................................................CTATCACTTTCCTTTACTTAA........................ 21 0 20 0.10 2 0 2 0 0
.................................................................................................................................................ACTTTCCTTTACTTAACCTAAT.................. 22 0 20 0.10 2 2 0 0 0
.............GGAAAAACGGGTGGAATGTGT....................................................................................................................................................... 21 1 20 0.10 2 0 2 0 0
................................................................................................................................................CACTTTCCTTTACTTAACCTAAT.................. 23 0 20 0.10 2 0 2 0 0
............................................................................................CTAAACATCATTCATTCAACCAATCACT................................................................. 28 1 20 0.10 2 2 0 0 0
................................................................................................ACATCATTCATTCAACCAATCACT................................................................. 24 0 20 0.10 2 0 2 0 0
.............................................................................................TAAACATCATTCATTCAACCAATCAC.................................................................. 26 0 20 0.10 2 2 0 0 0
.CCACATTCCACCGGAAAAACGGTT................................................................................................................................................................ 24 1 20 0.10 2 0 2 0 0
..............GAAAAACGGGTGGAATGTAT....................................................................................................................................................... 20 0 20 0.10 2 2 0 0 0
CCCACATTCCACCGGAAAAACG................................................................................................................................................................... 22 0 20 0.10 2 1 1 0 0
............................................................................TCAATCATCATTCAATATAAACATCAT.................................................................................. 27 0 15 0.07 1 1 0 0 0
.............................................................................................................................................CATCACTTTCCTTTACTTAACCTAGT.................. 26 2 20 0.05 1 0 1 0 0
............................................................................................................................................CTATGACTTTCCTTTACTTAACCTAA................... 26 1 20 0.05 1 1 0 0 0
..........AAAGGAAAAACGGGTGGAATGTAT....................................................................................................................................................... 24 2 20 0.05 1 0 0 0 1
...........................................................................................................................................TCTATCACTTTCCTTTACTTAA........................ 22 0 20 0.05 1 1 0 0 0
.............AGAAAAACGGGTGGAATGTAT....................................................................................................................................................... 21 1 20 0.05 1 1 0 0 0
................................................................................TCATCATTCAATATAAACATCATT................................................................................. 24 0 20 0.05 1 1 0 0 0
.............................................................................................................................................TATCACTTTCCTTTACTTCACCTAAT.................. 26 1 20 0.05 1 0 1 0 0
............................................................................................................................................CTATCACTTTCCTTTAATTCACCTAAT.................. 27 2 20 0.05 1 0 1 0 0
............................................................................................................................................CTATCACTTTCCTTTACTGA......................... 20 1 20 0.05 1 0 1 0 0
....................................CGTAAGATCGACAGCTCAAATGACCTAG......................................................................................................................... 28 2 20 0.05 1 0 1 0 0
............................................................................................ATAAACATCATTCATTCAACCAATCAGT................................................................. 28 1 20 0.05 1 0 1 0 0
...............................................................................................................................................CCACTTTCCTTTACTTAACCTAAC.................. 24 2 20 0.05 1 0 1 0 0
.................................................................................CATCATTCAATATAAACATCATTCAT.............................................................................. 26 0 20 0.05 1 1 0 0 0
............................................................................................................................................ATATCACTTTCCTTTACTTAACCGAAT.................. 27 2 20 0.05 1 0 1 0 0
.................................................................ACATCACTCATGCAATCATCATTCAAT............................................................................................. 27 1 20 0.05 1 1 0 0 0
.................................................................ACATCACTCATTGAATCATCATTC................................................................................................ 24 1 20 0.05 1 1 0 0 0
..................................................................CATCACTCATTCAATCATCA................................................................................................... 20 0 20 0.05 1 1 0 0 0
...............................................................................................AACATCATTCATTCAACCAATCACTT................................................................ 26 1 20 0.05 1 1 0 0 0
..........................................................................................ATATAAACATCATTCATTCAACCAAT..................................................................... 26 0 20 0.05 1 1 0 0 0
..............................................................................................CAACATCATTCATTCAACCAATCACT................................................................. 26 1 20 0.05 1 1 0 0 0
........................................................................................................................TCAAATAAGCATCATACATT............................................. 20 3 20 0.05 1 1 0 0 0
..............................................................................................................................................ATCACTTTCCTTTACTTAAC....................... 20 0 20 0.05 1 0 1 0 0
................................................................................TCATCATTCAATATAAACATCAT.................................................................................. 23 0 20 0.05 1 1 0 0 0
.................................................................ACATCACTCATTCAATCATCATTCAAG............................................................................................. 27 1 20 0.05 1 1 0 0 0
....................................................................................CATTCAATATAAACATCATTCATTC............................................................................ 25 0 20 0.05 1 1 0 0 0
.........................................................................................AATATAAACATCATTCATTCAACCAAT..................................................................... 27 0 20 0.05 1 1 0 0 0
..............................................................................................................................................ATCACTTTCCTTTACTTAA........................ 19 0 20 0.05 1 1 0 0 0
...............................................................................................................................................TCACTTTCCTTTACTTAACCTAATATC............... 27 0 20 0.05 1 1 0 0 0
...............AGAAACGGGCGGAATGTAT....................................................................................................................................................... 19 2 20 0.05 1 0 0 1 0
............................................................................................................................................CTATCACTTTCCTTTACTTAACCGAAT.................. 27 1 20 0.05 1 0 1 0 0
.............................................................................................................................................TATCACTTTCCTTTACTTAACCTATT.................. 26 1 20 0.05 1 0 1 0 0
.............................................................................................................................................TATCACTTTCCTTTACTTAACC...................... 22 0 20 0.05 1 0 1 0 0
..........................................................................................................................................TTCTATCACTTTCCTTTACTTAACCTAAT.................. 29 0 20 0.05 1 0 1 0 0
........................................................................................CAATATAAACATCATTCATTCAACCAATC.................................................................... 29 0 20 0.05 1 0 1 0 0
...............................................................................................................................................TCACTTTCCTTTACTTAACCTAATA................. 25 0 20 0.05 1 1 0 0 0
................................................................................................ACATCATTCATTCAACCAATCAC.................................................................. 23 0 20 0.05 1 1 0 0 0
............................................................................................................................................CTATCACTTTCCTTTACT........................... 18 0 20 0.05 1 0 1 0 0
............................................................................................ATAAACATCATTCATTCAACCAATCA................................................................... 26 0 20 0.05 1 1 0 0 0
..............................................................................................................................................................TAACCTAATATCAGTAATTCAAATATA 27 0 20 0.05 1 1 0 0 0
..............................................................................................................................................TTACCTTTCCTTTACTTAACCTAAT.................. 25 3 20 0.05 1 0 1 0 0
...................................................................................................TCATTCATTCAACCAATCACT................................................................. 21 0 20 0.05 1 0 1 0 0
............................................................................................................................................CTACCACTTTCCTTTACTTAACCTAAT.................. 27 1 20 0.05 1 1 0 0 0
..............AAAAAACGGGTGGAATGTAT....................................................................................................................................................... 20 1 20 0.05 1 0 0 1 0
....................................................................TCACTCATTCAATCATCATTCAAT............................................................................................. 24 0 20 0.05 1 0 1 0 0
.......................................................................................TCAATATAAACATCATTCATTCAACC........................................................................ 26 0 20 0.05 1 1 0 0 0
............................................................................................................................................ATATCACTTTCCTTTACTTGA........................ 21 2 20 0.05 1 0 1 0 0
............................................................................................................................................CTATCACTTTCCTTTACTTAACC...................... 23 0 20 0.05 1 1 0 0 0
...............................................................................................................................................TCACTTTCCTTTACTTCACCTAGT.................. 24 2 20 0.05 1 0 1 0 0
............................................................................................................................................CTATCACTTTCCTTTACTTCACCTAAT.................. 27 1 20 0.05 1 1 0 0 0
............................................................................................................................................CTATCACTTTCCTTTACTTAACCTAATA................. 28 0 20 0.05 1 0 1 0 0
...............................................................................................................................................CCACTTTCCTTTACTTAACCTAAT.................. 24 1 20 0.05 1 0 1 0 0
....................................................................................................CATTCATTCAACCAATCA................................................................... 18 0 20 0.05 1 0 1 0 0
.............................................................................................................................................CATCACTTTCCTTTACTTAACCTA.................... 24 1 20 0.05 1 0 1 0 0
............CGGAAAAACGGGTGGAATGTATAACGT.................................................................................................................................................. 27 0 20 0.05 1 1 0 0 0
..............................................................................................AAACATCATTCATTCAACCAATCA................................................................... 24 0 20 0.05 1 1 0 0 0
................................................................................................TTATCATTCATTCAACCAATCACT................................................................. 24 2 20 0.05 1 1 0 0 0
............................................................................................................................................CTATCACTTTCCTTTAATTAACCTAAT.................. 27 1 20 0.05 1 0 1 0 0
............................................................................................................................................CTATCACTTTCCTTTACTTAACCTAAGC................. 28 2 20 0.05 1 0 1 0 0
................................................................................TCATCATTCAATATAAACATCATTCATT............................................................................. 28 0 20 0.05 1 0 1 0 0
............CGGAAAAACGGGTGGAATGTAT....................................................................................................................................................... 22 0 20 0.05 1 1 0 0 0
...........AAGGAAAAACGGGGGGAATGTAT....................................................................................................................................................... 23 3 20 0.05 1 0 0 1 0
.............................................................................................................................................TATCACTTTCCTTTACTTAACCTTAT.................. 26 1 20 0.05 1 1 0 0 0
............................................................................................................................................CTATCACTTTCCTTCACTTAACCTAAT.................. 27 1 20 0.05 1 0 1 0 0
............................................................................................................................................CTATCACTTTCCTTTACCTA......................... 20 1 20 0.05 1 0 1 0 0
.....................................................................CACTCATTCAATCATCATTCAGT............................................................................................. 23 1 20 0.05 1 0 1 0 0
............................................................................................................................................CTATCACTTTCCTTTACTTAACCTGAT.................. 27 1 20 0.05 1 1 0 0 0
............................................................................................................................................CTATCACTTTCCTTTACTTAACCAAAT.................. 27 1 20 0.05 1 0 1 0 0
..................TACGGGTGGAATGTATAACGTAAGAT............................................................................................................................................. 26 1 20 0.05 1 0 1 0 0
.............GGAAAAACGCATGGAATGTAT....................................................................................................................................................... 21 2 20 0.05 1 0 0 1 0
...........................................................................................................................................TCTATCACTTTCCTTTACTTAACC...................... 24 0 20 0.05 1 1 0 0 0
.............................................................................................................................................CATCACTTTCCTTTACTTAACCTAAT.................. 26 1 20 0.05 1 0 1 0 0
........CCACCGGAAAAACGGGTGGAATGTAT....................................................................................................................................................... 26 0 20 0.05 1 0 1 0 0
.......................................................................................TCAATATAAACATCATTCATTCAACCAAT..................................................................... 29 0 20 0.05 1 0 1 0 0
............................................................................................................................................CTATCACTTTCCTTTACTTC......................... 20 1 20 0.05 1 0 1 0 0
..................................................................TATCACTCATTCAATCATCATTCAA.............................................................................................. 25 1 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6500:32240390-32240574 + dmo_162 GGGTGTAAGGTGGCCTTTTT---GCCCACCTTACATATTGC-ATTCTAGTTGTCGAGTTTACTGGAGC-TTGTAGTGAGTAAGTTAGTAGTAAGTTATATTTGTAGTAAGT-AAGTTG--GTTAGTGAGGTATATTCGTA-GCATGTAAGATAGTGAAAGGAAATGAATTGGATTATAGTCATTAAGTTTATAT
droVir3 scaffold_12723:31653-31829 + GGATGTAAGGCGTCCACTAAGGTAGCCACCCCACAGTTCATAATTATTGTTATAGGGTATA----AGCGTTGTAT------AGCTATAAGTA--TTGTATTATTAATAAGGGCAGATAAGGC--AAGCTGTATGTATGTATGTATTGAAGCTAGTTAACGGCAAGGTGCCAAGTTC---GAATTAAGTTTGAAT
droFic1 scf7180000452789:2459-2468 + GAATGTGAGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000489649:884-893 - GGATGTGAGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000763740:25406-25442 - AAT-------------------------------------------------------------------------------------------------------------------------------------------------------------GAAATAAATGTGTTTATCCTTAATATGTTTGGGG
droBia1 scf7180000302134:3479-3488 - GAGTGTGAGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
GGGTGTAAGGTGGCCTTTTT---GCCCACCTTACATATTGC-ATTCTAGTTGTCGAGTTTACTGGAGC-TTGTAGTGAGTAAGTTAGTAGTAAGTTATATTTGTAGTAAGT-AAGTTG--GTTAGTGAGGTATATTCGTA-GCATGTAAGATAGTGAAAGGAAATGAATTGGATTATAGTCATTAAGTTTATATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................................................................................................................TG--GTTAGTGAGGTATATTCGTA-GC...................................................2425.5011620003
......................................................GAGTTTACTGGAGC-TTGTAGTGAGT..................................................................................................................2523.507500020
......................................................GAGTTTACTGGAGC-TTGTAGTGAG...................................................................................................................2422.004400000
......................................................GAGTTTACTGGAGC-TTGTAGTGA....................................................................................................................2321.503300000
......................................................................................................................................................................AATTGGATTATAGTCATTAAGT......22201.30262500010
....................................................................................................................TG--GTTAGTGAGGTATATTCGTA-GCATG................................................2721.002200000
....................................................................................................................TG--GTTAGTGAGGTATATTCGTA-GCA..................................................2521.002200000
....................................................................................................................TG--GTTAGTGAGGTATATTCGTA-G....................................................2321.002200000
.........................................................TTTACTGGAGC-TTGTAGTGAGTAA................................................................................................................2420.501100000
......................................................GAGTTTACTGGAGC-TTGTAGT......................................................................................................................2120.501100000
........................................................GTTTACTGGAGC-TTGTAGTGA....................................................................................................................2120.501000001
........................................................GTTTACTGGAGC-TTGTAGTGAGTA.................................................................................................................2420.501100000
.....................................................................................................................G--GTTAGTGAGGTATATTCGTA-G....................................................2220.501100000
..........................................................................................................TAAGT-AAGTTG--GTTAGTGAGG................................................................2120.501000010
.........................................................................................................................TTAGTGAGGTATATTCGTA-GCAT.................................................2320.501100000
.......................................................AGTTTACTGGAGC-TTGTAGTGAG...................................................................................................................2320.501100000
........................................................GTTTACTGGAGC-TTGTAGTGAGT..................................................................................................................2320.501000010
.........................................................TTTACTGGAGC-TTGTAGTGA....................................................................................................................2020.501100000
........................................................GTTTACTGGAGC-TTGTAGTGAGTAAG...............................................................................................................2620.501100000
......................................................GAGTTTACTGGAGC-TTGTAGTG.....................................................................................................................2220.501100000
......................................................GAGTTTACTGGAGC-TTGTAGTGAGTAA................................................................................................................2720.501100000
.........................................................................................................................TTAGTGAGGTATATTCGTA-GC...................................................2120.501100000
......................................................................................................................................................................AATTGGATTATAGTCATTAAG.......21200.357500101
............GCCTTTTT---GCCCACCTTACATATTGC-A.......................................................................................................................................................27200.204400000
......................................................................................................................................................................AATTGGATTATAGTCATTAAGTT.....23200.153300000
......................................................................................................................................................................AATTGGATTATAGTCATTAAGTTTATAT28200.153300000
.......................................................................................................................................................................ATTGGATTATAGTCATTAAG.......20200.102200000
............GCCTTTTT---GCCCACCTTACATATTG..........................................................................................................................................................25200.102200000
......................................................................................................................................................................AATTGGATTATAGTCATTAAGTC.....23200.102100001
..................................................................................................................................TATATTCGTA-GCATGTAAGATAG........................................23150.071100000
...................................................................................................................................ATATTCGTA-GCATGTAAGATAGTG......................................24150.071100000
......................................................................................................................................................................AATTGGATTATAGTCATTAAGTTT....24200.051100000
.......................................................................................................................................................................ATTGGATTATAGTCATTAAGT......21200.051100000
......................................................................................................................................................................AATTGGATTATAGTCATTAAGTTTAT..26200.051100000
......................................................................................................................................................................AATTGGATTATAGTCATTAAGTTTG...25200.051100000
.......................................................................................TAGTAAGTTATATTTGTAGTAAGA-..................................................................................24200.051100000
..........................................................................................................................................................................GGATTATAGTCATTAAGTTTATC.23200.051100000
......................................................................................................................................................................AATTGGATTATAGTCATTAAA.......21200.051000010
..........TGGCCTTTTT---GCCCACCTTACATAT............................................................................................................................................................25200.051100000
.......................................................................................TAGTAAGTTATATTTGTAGTAA.....................................................................................22200.051100000
........................................................................................................AGTAAGT-AAGTTG--GTTAGTG...................................................................20200.051100000
..........TGGCCTTTTT---GCCCACCTTACATATTGC-A.......................................................................................................................................................29200.051100000
................................................................................................................................................TGTAAGATAGTGAAAGGAAAT.............................21200.051000001
.......................................................................................................TAGTAAGT-AAGTTG--GTTAGTG...................................................................21200.051000001
..................TT---GCCCACCTTACATATTGC-ATTCTA..................................................................................................................................................26200.051100000
........................................................................................................................................................................TTGGATTATAGTCATTAAG.......19200.051100000
.......................................................................................TAGTAAGTTATATTTGTAGTA......................................................................................21200.051100000
......................................................................................................................................................................AATTGGATTATAGTCATTAAGTTTA...25200.051100000
droVir3
GGATGTAAGGCGTCCACTAAGGTAGCCACCCCACAGTTCATAATTATTGTTATAGGGTATA----AGCGTTGTAT------AGCTATAAGTA--TTGTATTATTAATAAGGGCAGATAAGGC--AAGCTGTATGTATGTATGTATTGAAGCTAGTTAACGGCAAGGTGCCAAGTTC---GAATTAAGTTTGAATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droFic1
GAATGTGAGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
GGATGTGAGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
AAT-------------------------------------------------------------------------------------------------------------------------------------------------------------GAAATAAATGTGTTTATCCTTAATATGTTTGGGGSizeHit CountTotal NormTotal
No Reads
droBia1
GAGTGTGAGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads

Generated: 05/15/2015 at 02:39 PM