ID:

dmo_1613

 Coordinate:

scaffold_6500:21161563-21161713 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-16.2 -15.8 -15.8

Flybase annnotation

CDS [Dmoj\GI17913-cds]; exon [dmoj_GLEANR_2712:1]; intron [Dmoj\GI17913-in]

Repeatable elements

NameClassFamilyStrand
(A)nSimple_repeatSimple_repeat+
(TA)nSimple_repeatSimple_repeat+
mature
  1. scaffold_2724:149-174 +
  2. scaffold_2912:312-337 +
  3. scaffold_3183:1092-1117 +
  4. scaffold_6200:10054-10079 +
  5. scaffold_6359:1620123-1620148 +
  6. scaffold_6473:5060119-5060144 +
  7. scaffold_6473:6949012-6949037 +
  8. scaffold_6494:90033-90058 +
  9. scaffold_6494:114442-114467 +
  10. scaffold_6496:1394916-1394941 +
  11. scaffold_6496:11571726-11571751 +
  12. scaffold_6500:13994134-13994159 +
  13. scaffold_6500:15993817-15993842 +
  14. dmo_1613  scaffold_6500:21161579-21161604 +
  15. scaffold_6500:22287133-22287158 +
  16. scaffold_6500:26585196-26585221 +
  17. scaffold_6540:3355253-3355278 +
  18. scaffold_6540:22373996-22374021 +
  19. scaffold_6540:26663259-26663284 +
  20. scaffold_6541:103843-103868 +
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CAAACCAATAAATCCCTACCGAAGCATACGTCCCGGTCCCGATATTGCAAGTAATTGAGTGCTATGGAAAAAAAAAAAAAAAAAAAAAAAAAAACAAATTACCAATTGTGAACAAATCTCATAAAAACTATTAAATATATTTTTGGTTAGATGAACTGTGGAAAAACGATAATGTATATATATATATATATATATATATATATATATATATATATATATATAATATACAATAGATAATATATATAATTAAA
**************************************************...((((....((((((......................................((((((.......))))))...((((((((......))))).))).....)))))).....)))).(((((((((((((....)))))))))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total V041
embryo
 V110
male body		 M046
female body
 M060
embryo
 V056
head
..........................................................GTGCTATGGAAGAAAAAAG.............................................................................................................................................................................. 19 2 1 1.00 1 0 1 0 0 0
.....................................................................AAAAAAAAAAAAAAAAAAAAAAAAACGAATCACCAA.................................................................................................................................................. 36 2 2 0.50 1 1 0 0 0 0
....................................................................AAAAAAAAAAAAAAAAACAAATAACACAAATTACCA................................................................................................................................................... 36 3 2 0.50 1 1 0 0 0 0
....................................................................AAAAAAAAAAAAAAAAAAAAAAAAAACAAATCACC.................................................................................................................................................... 35 1 2 0.50 1 1 0 0 0 0
....................................................................AAAAAAAAAAAAAAAAAAAAAAAACACAAATAACCA................................................................................................................................................... 36 2 4 0.25 1 1 0 0 0 0
..........................................................................................................................................ATTTTTGGTAAGCTGAACT.............................................................................................. 19 2 8 0.13 1 0 1 0 0 0
..................................................................GAAAAAAAAAAAAAAAAAAAAAAAAA............................................................................................................................................................... 26 0 20 0.10 2 0 0 2 0 0
.....................................................................AAAAAAAAAAAAAAAAAAAAAAAAACACATCACCAG.................................................................................................................................................. 36 3 11 0.09 1 1 0 0 0 0
...........................................................TGCTATGAAAAAAAAAAAAAAAA......................................................................................................................................................................... 23 1 14 0.07 1 0 0 1 0 0
.................................................................................................................................ATTGAATATATATTTGGGTAGA.................................................................................................... 22 3 15 0.07 1 0 0 0 1 0
....................................................................AAAAAAAAAAAAAAAAAAAAAAAAAACAAACCACCA................................................................................................................................................... 36 2 20 0.05 1 0 0 0 0 1
................................................................TGGAAAAAAAAAAAAAAAAA....................................................................................................................................................................... 20 0 20 0.05 1 0 0 1 0 0
...................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAACAAAT........................................................................................................................................................ 32 0 20 0.05 1 1 0 0 0 0
.............................................................ATATGGAAAAAAAAAAAAAAAAAAA..................................................................................................................................................................... 25 1 20 0.05 1 0 0 1 0 0

Anti-sense strand reads

GTTTGGTTATTTAGGGATGGCTTCGTATGCAGGGCCAGGGCTATAACGTTCATTAACTCACGATACCTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTAATGGTTAACACTTGTTTAGAGTATTTTTGATAATTTATATAAAAACCAATCTACTTGACACCTTTTTGCTATTACATATATATATATATATATATATATATATATATATATATATATATATATTATATGTTATCTATTATATATATTAATTT
**************************************************...((((....((((((......................................((((((.......))))))...((((((((......))))).))).....)))))).....)))).(((((((((((((....)))))))))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total V110
male body		 M046
female body
 V049
head
...................................................................................................AGGGTTAACACTAGTTTAGATTA................................................................................................................................. 23 3 1 1.00 1 1 0 0
..................................................................................................AAGGGTTAACACTAGTTTAGATT.................................................................................................................................. 23 3 1 1.00 1 0 1 0
...................................................................................................AGGGTTAACACTAGTTTAG..................................................................................................................................... 19 2 2 0.50 1 1 0 0
..............................................................................................................................TGATCATTTATATATACACCAA....................................................................................................... 22 3 7 0.14 1 0 0 1
..............................................................................................................TTGTTTAGAGTCTTTGTGGTA........................................................................................................................ 21 3 7 0.14 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6500:21161513-21161763 + dmo_1613 CAAACCAATAAATCCCTACCGAAGCATACGTCCCGGTCCCGATATTGCAAGTAATTG--------------------AGTGCT---ATGGAAAAAAAAAAAAAAAAAA-----A-----------------AAAAAAAACAAATTACCAATTGT----------------------------------GAACAAAT---------------CT--------------------------------------------------------------------------------------------------------------------------------------------------------CATAAA-----------------------AAC------------------------------------------------------------T------------------------------------------------------------------------A--------------------------------TTAAATA------TATTTTTGG---------------TT--------AG------------------------------ATGA-------------------ACTGTGGAAAAACGATAAT----G--------------------------------------TATA-------TATA----------------TAT----ATATATATATATATATATATATA--TATATA-------------------------------------------------------TAT--AT----ATAATAT--A--CAATAGATAAT--AT-ATATAATTAAA
droVir3 scaffold_12963:16212351-16212597 + dvi_12224 CAAGCCAGTGAATCCCTTTCGCAGCACACGACCCGGTCCCGATATTGCAAGTAATTA--------------------GCTGCACTCAAAAAAAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCAACGAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAAATTATGCAAATATTTTTGC------CGGGGAATGTTGAAAAAGTGAATAAAA-------------------------A---------------------CTTGAGAAGAATTGTTGAA----A--------ACTTTATACATATCTAGGGATCATATGAAAAGCACA-----GTTA------------------T----ATATATATATATATAATT-------------------------------------------------------------------------AT----GTTTTAC--A--CGTTAGGT-----TA-CTATAAAAAAA
droGri2 scaffold_15126:6323189-6323388 - CGA-------C----------A----------------------TTAAA--------------------------------------------------------AATAATTAAATGAATA---AAAAA----------CA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTAAATAAATATAA-------------------------------------------------------------CAATTAAATGTGTTGTAACATGATGCCAAGGAAAATATGGAAAATCGGAATACTATGACAAACTTAAGAGAGGGTTATGATCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAT--------------------------------ATATATAT-ATATATA--------------TATATA----------------------------TATATATATATAT----A------------------------TATATATATATATAT------------------------------------AT-ATATATATAGA
droWil2 scf2_1100000004822:496914-497122 - TGC-------T----------A-----------------------ACA---------------------------------------------------------AGAGAAAA-----------AAACCCAAAAAAAT-TAAAAAAAAAAAA---AAA----AAATT--------------------------------------GTTCAGC-------------------------A---AACCCA-----------------------------------------------------------------------------------------------------------------------------AAAAAAAACTTAAAATTTTGTGTAAAAATAAAATAACTAAATGTTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTAATGAAAATGAT------------AA--AATAGATATATATATAT--------------------------------ATATATAT-ATATATA--------------TATATA----------------------------TATATATATATAT----A------------------------TATATATATATACAT------------------------------------AG-ATATATATATA
dp5 Unknown_group_232:33032-33236 - TAT-------G----------T-----------------------AAAA--------------------------------------------------------TATAATTAAGTAAAAAAAATAA----------------------------GAA----AAACT--------------------------------------ATATAGT-------------------------A---AATATA-----------------------------TAATATATATAT------------------------------------------------------------------------------GTATA-----------------------TAATA------------------------------------------------------ATAAT------------------------------------------------------------------------A--------------------------------ATAATTA------TAATAATATATAATAT----AAT---------------------------------------------AT-------------------AA----------------------TATA---------------------------TAATA--TATA-------------TA----------TATAT----ATATATATATATA----TA--TGTATATATAC----ATATACATATA------------------------CATACATATACATAT--------------------A---TATATGT--A--AT-ATATTGTTATA
droPer2 scaffold_337:9490-9686 + TAT-------G----------T-----------------------AAAA--------------------------------------------------------TATAATTAAATAAAAAAAATAA----------------------------GAA----AAACT--------------------------------------ATATAGT-------------------------A---AATATA-----------------------------TAATATATATAT------------------------------------------------------------------------------GTATA-----------------------TAATA------------------------------------------------------ATAAT------------------------------------------------------------------------A--------------------------------ATAATTA------TAATAATATATAATAT----AAT---------------------------------------------AT-------------------AA----------------------TATA---------------------------TAATA--TATA-------------TA----------TATAT----ATATATATATATA----TA--TATATATATA-------------------------------------------------------TAT--GTAATATATTGTT--A--TATTATATTAT--AT-ATACAGTATAA
droAna3 scaffold_12578:5268-5488 - AAT-------T----------A-----------------------ATT---------------------------------------------------------GAACAAA-----------ATAAAATAAATGT----------------------------------------------------------------------AATAGA-------------------------A---A--ATA---------------------------------------------------------------------------------CAATAAATAATAATAA-------------------------------------------------------------TCATCTAAT-TGGTGCTATTTGTTGAATTAAAAAATATTAATAATTT-----------------------------------------------------------------------------------------------------------------------------AATAAT--TTTA----------GTT--------TG----ACATACTAATGTTATATATTTAACTAATTTTTTGACTA----------------------------------------GTAT--------------------------------ATATATAT-ATATATA--------------TATATA----------------------------TATATATATATAT----A------------------------TATATATATATATA----------------------------------T--AT-ATATAATTAAA
droBip1 scf7180000394965:14903-15069 - AAA-------A----------A-----------------------AAA---------------------------------------------------------GGAAACAAA--------------A----------CAAAATAGTAAAATA----------------------------------GAACAAAT---------------TTTAAC----------------------------TG------------A---A------AAGAATAAATATAGATAC----------------------A------------TACAT--------------------------------------GTACA-----------------------CAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAAAAATACA-----TATA------------------T----ATATATATATATAAAATTATATA--TATTTA-------------------------------------------------------TAT--AA----AAAATAT--A--CAAAAAAAAAT--AT-AAAAAAATAAA
droKik1 scf7180000302401:639571-639736 + AAT-------T----------G-------------------------------------------------------TATACT---ATTTGAACTAAAAC-----GGAAACAAA-------------CCC-----------A---------------------------------------------------------------------------------------------------------------------------------------------AAAACAAACGAAATTGTTCTCTCAATAATTCATGAACAACAAACAAATTAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAA--------------------------------------------------------------------------------------------------T--TATATAT--------------ACAT----TTATATATATATACA--TCTATAT----A---------------------------------------------------TATAT----GAAATAA--AAACAAAAAAC--A--AT-ATAAAAAGAAA
droFic1 scf7180000453901:787427-787621 - ACG-------C----------A------------------------GAA--------------------------------------------------------GAAGCGAG-----------GAAAACAAAACCCATTAAATTATTTGTTGA----------------------------------GTA-----------------------------------------------------------------------------------TTTTAT---------------------------------------------------------------------------------------TAAA-----------------------TAATA------------------------------------------------------ATTAC------------------------------------------------------------------------G--------------------------------ATAATAA------TTATAAAATTTAA----------ATT--------GA------------------------------ACGA-------------------AATGCGAAAAACAAAAAC--------------T--------------------------------GAA-----TATA--CA------------TAT----ATATAAATATATATATATA--TA--------------------------------------------------T-TATATA-----TAA--AC----AAATTAT--T--TAATAGTTATG--CT-AAAAAATTATT
droEle1 scf7180000491273:510917-511170 - ATA-------AAACGCCACCACAGCGTACCGCACCGCATCGAAGATGCGAGCGCATAACAATTGCAATAAAATTTAACGTGCA---TCGATAAAAAAGAATAT------------------------------------CA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACCGAATAAAAACAACAACGAAGCGGGAACGATCCGCTTGCCAGAAGAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTT------CATTAC----TTG----------TTT--------G-------------------------------AATG----AATGGGGAAAGTGCA------------AA--AAA----------AATT--------------------------------GCGTTGAT-ATATATA--------------TATATA----------------------------TATATATATATAT----A------------------------TACATATGTATATGT------------------------------------AT-GAAAAAATGGA
droRho1 scf7180000775259:1255-1415 + AAT-------T----------A-----------------------ATAA--------------------------------TT----------------------AATAATT------------AATA--------------------------------------------ATTAATAATTAATAATTAAT------------------------------------------------------A-----------------------------ATTAATAATTAA--------------------TAA----------------------------------------------------------TT-----------------------AATAA------------------------------------------------------TTAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATT----AATAATTAATAT------------------------ATATATATATAT--------------------------------ATATATAT-ATATATA--------------TATATA----------------------------TATATATATATAT----A------------------------TATATATATATATAT------------------------------------AT-ATATATATATA
droBia1 scf7180000302334:281821-282001 - ATC-------G----------C-----------------------AAGA--------------------------------------------------------AATGAATG-----------AAAAACAAAAACCT-TTACATACAAACTGA----------------------------------GAACAT-----------ATTCATCAAAT----------------------------G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGC------------------------------------------------------------------------C--------------------------------CTAGTTA------CATTACAGATTAGTTT-------------------------------------------------AACTA---------------------------------------------CATGA------------------------TAATA--TACA-------------TA----------CGTAT----ATAAATATATATA----TA--TTTTTTCATAT----A---------------------------------------------------T--AAATTATATATAC--A--CATTGCAT--A--AT-ATATATTTAAA
droTak1 scf7180000410768:4474-4660 + AAA-------C----------G------------------------AGT--------------------------------------------------------GATAACG------------AAAAA----------CAGAATGTCATATTT----------------------------------GAATAAGCTGAAATCATTCGAGTTATTC----------------------------G--------------------------------------AATCCATTCGATTTTCTTATA-------------------------------------------------------------------------------------------------------------------------TGACGTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAGGGAAAAATAGAAAA----T--------T--------------------------------ACA-----TTTT--TATATAT--------------ATAT----ATATATATATATACA--TACATA-------------------------------------------------------TGT--GT----ATAGTACACATAGTAC---------ACATAGTACACATA
droEug1 scf7180000406482:848-1048 - ATA-------T----------A------------------------AAA--------------------------------------------------------TATAAA----------------------ATATAAAATA-----------------------------------------------------------------TAAA-------------------------A---T--ATA----------------C------AATATTTAATATAAATAT------------------------------------------------------------------------------AAATA-----------------------TA---------------------------------------------------------------------------------------------------------------------------------------------------AAT--------------------ATAA------ATATAAATATAAA----------TAT--------AAATATAA---------------ATAT----AAATA-------------------------------TA--AAT----ATAAATATAA--------------------------------A-------------TA--------------T----A--A--------------------------AT--------AT----AAATATAAATATAAATATAAATATAAATATAAATATA---AAT--AT----ACAATAT--A--CAATATACAATATAAAATATAAATATA
dm3 chrX:9531907-9532148 + CTA-------A----------T-----------------------GAAT--------------------------------------------------------CATAAGG------------CAAA-----A----------TTCAAATTAA------------------------------AATTAAAT-------------------GTTTGCTGTCTACAAATAGCCAGAGAAACAAAAAAATAGATTTCCTTGAA-----------------------------------------------------------------------------------------------------------------------------------------A-------------------------------------------------------------------ACAAAAGACAGCGAAAACAACAAATATACATTTTTTGGCGAGGTCTTTACAAATCATTCAGGGGGCGACTCTCTGTCCATATAGGCGAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTACAT-ATACATA--------------TATATA----------------------------TATATATATATAT----A------------------------TATATATATATATAT------------------------------------AT-ATATATATATA
droSim2 2r:268696-268890 - GTT-------C----------T-----------------------AAG---------------------------------------------------------GAAGATTAACTAAAGAAAAGA------------------------AATAATTTAAGTACGTTGTTTAC-------------------------------------------G----------------------------AG------------G---C------AACATTAAAGGTACATGT----------------------A--------------------------------------------------------TTTA-----------------------TG---------------------------------------------------------------------------------------------------------------------------------------------------AAT--------------------ATA-------------------------------------------------------------------------------------------------AGGCA------AT--AAA----TTATATAT---------------------------------------------T--TATATATACGTATATATATATA----------TA--------TA--TATATAT--ATATATAT----ATATATATTTATAAGTACG------TATATATATATATA----------------------------------T--AT-ATAAATTCATA
droSec2 scaffold_26:744682-744916 - ACC-------G----------T-----------------------AAAA--------------------------------------------------------TATGTTCCCGTTC------------------------------------------------------GCGGATG--------------------------------------------------CCTA-----GTAAGTGCGTCAGTCTCCTGCAAGAAAACACTTACAACTAACATAAATTT------------------------------------------------------------------------------ATATA-----------------------TT-----------------------------T-------------------------------------------------------------------------------------------------------------CCTCGGTTAACAGAGCCCACCAGTGTTGCCAATTT------TAAAAATGA---------------AA----AAATGAGT---------------------------------------------------AATCGGAAAACATT--GAA----GTTTATAATA--------------------------------GTATGTAT-ATATATA--------------TATATA----------------------------TATATATATATAT----A------------------------TATATATATATAGAT------------------------------------AT-ATATATATAGA
droYak3 3R:7316157-7316354 - ATT-------G----------C-----------------------AGTA--------------------------------------------------------TGTATCCTGTTTA------------------------------------------------------CCCAATG--------------------------ATACAGA-------------------------A---AATATA-----------------------------TATAAAGTTTAT------------------------------------------------------------------------------GGAAA-----------------------AAGCA------------------------------------------------------GCAACAATGGCAAACACAAATGAGACGG--AAGCAG-----------------------------------------------------------------------------ATA-AG--------AAAATATATTAT----AATGTT--------GA------------------------------AC---------------------ATTGAGAAAACACGAAAAA----T--------G--------------------------------CTA-----TATA--CATA--------CAT------ATAT----ATATATATATATATA--TATATA-------------------------------------------------------TAT--------------------------------------TTATATTAT
droEre2 scaffold_4793:37713-37934 + TCA-------T----------G-------------GCCTTACTATGACAAGAAATTA--------------------ACATTT---ATAAAATAACACAACATAATAT-----A-----------------AAATTATATAAA-------------------------------------------------------------------TTATAT----------------------------ATG----------------T------AATATTATATA--TATATAAATTATATTGTGT-------AATTTATGTATATATACAT--------------------------------------ATATA-----------------------CAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATA---------CATATAT------------------------ATATATATATAT--------------------------------ATATATAT-ATATATA--------------TATATA----------------------------TATATATATATAT----A------------------------TATATATATATATTT------------------------------------AT-TTATATATATA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
CAAACCAATAAATCCCTACCGAAGCATACGTCCCGGTCCCGATATTGCAAGTAATTG--------------------AGTGCT---ATGGAAAAAAAAAAAAAAAAAA-----A-----------------AAAAAAAACAAATTACCAATTGT----------------------------------GAACAAAT---------------CT--------------------------------------------------------------------------------------------------------------------------------------------------------CATAAA-----------------------AAC------------------------------------------------------------T------------------------------------------------------------------------A--------------------------------TTAAATA------TATTTTTGG---------------TT--------AG------------------------------ATGA-------------------ACTGTGGAAAAACGATAAT----G--------------------------------------TATA-------TATA----------------TAT----ATATATATATATATATATATATA--TATATA-------------------------------------------------------TAT--AT----ATAATAT--A--CAATAGATAAT--AT-ATATAATTAAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................................................................GAAAAAAAAAAAAAAAAAA-----A-----------------AAAAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.102200000
.......................................................................................TGGAAAAAAAAAAAAAAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
..........................................................................................AAAAAAAAAAAAAAAAAA-----A-----------------AAAAAAAACAAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................32200.051010000
droVir3
CAAGCCAGTGAATCCCTTTCGCAGCACACGACCCGGTCCCGATATTGCAAGTAATTA--------------------GCTGCACTCAAAAAAAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCAACGAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAAATTATGCAAATATTTTTGC------CGGGGAATGTTGAAAAAGTGAATAAAA-------------------------A---------------------CTTGAGAAGAATTGTTGAA----A--------ACTTTATACATATCTAGGGATCATATGAAAAGCACA-----GTTA------------------T----ATATATATATATATAATT-------------------------------------------------------------------------AT----GTTTTAC--A--CGTTAGGT-----TA-CTATAAAAAAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAC--A--CGTTAGGT-----TA-CTATAAAAAAA26203.15630000000000000000000000000000400100058000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAC--A--CGTTAGGT-----TA-CTATAAAAA..24200.9519000000000000000000000000808030000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAC--A--CGTTAGGT-----TA-CTATAAAAAA.25200.70140000000000001000000000000012000000000000100000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAC--A--CGTTAGGT-----TA-CTATAAAAAAA25200.204000000000000000000000000004000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAC--A--CGTTAGGT-----TA-CTATA......19200.102001000000000000000000000000100000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAC--A--CGTTAGGT-----TA-CTAT.......21200.051000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAC--A--CGTTAGGT-----TA-CTAT.......20200.051000000000000000000000000000000000000000000000000000000000000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATATATATATAATT-------------------------------------------------------------------------AT----.......................................19200.051000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAC--A--CGTTAGGT-----TA-CT.........19200.051010000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAC--A--CGTTAGGT-----TA-CTATAAA....21200.051000000000000000000000000000000000001000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--CGTTAGGT-----TA-CTATAAAA...19200.051000000000000000000000000001000000000000000000000000000000000000
droGri2
CGA-------C----------A----------------------TTAAA--------------------------------------------------------AATAATTAAATGAATA---AAAAA----------CA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTAAATAAATATAA-------------------------------------------------------------CAATTAAATGTGTTGTAACATGATGCCAAGGAAAATATGGAAAATCGGAATACTATGACAAACTTAAGAGAGGGTTATGATCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAT--------------------------------ATATATAT-ATATATA--------------TATATA----------------------------TATATATATATAT----A------------------------TATATATATATATAT------------------------------------AT-ATATATATAGASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TGC-------T----------A-----------------------ACA---------------------------------------------------------AGAGAAAA-----------AAACCCAAAAAAAT-TAAAAAAAAAAAA---AAA----AAATT--------------------------------------GTTCAGC-------------------------A---AACCCA-----------------------------------------------------------------------------------------------------------------------------AAAAAAAACTTAAAATTTTGTGTAAAAATAAAATAACTAAATGTTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTAATGAAAATGAT------------AA--AATAGATATATATATAT--------------------------------ATATATAT-ATATATA--------------TATATA----------------------------TATATATATATAT----A------------------------TATATATATATACAT------------------------------------AG-ATATATATATASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................ACTAAATGTTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTAATGAAAATG..............................................................................................................................................................................................................................................2511.00100010
dp5
TAT-------G----------T-----------------------AAAA--------------------------------------------------------TATAATTAAGTAAAAAAAATAA----------------------------GAA----AAACT--------------------------------------ATATAGT-------------------------A---AATATA-----------------------------TAATATATATAT------------------------------------------------------------------------------GTATA-----------------------TAATA------------------------------------------------------ATAAT------------------------------------------------------------------------A--------------------------------ATAATTA------TAATAATATATAATAT----AAT---------------------------------------------AT-------------------AA----------------------TATA---------------------------TAATA--TATA-------------TA----------TATAT----ATATATATATATA----TA--TGTATATATAC----ATATACATATA------------------------CATACATATACATAT--------------------A---TATATGT--A--AT-ATATTGTTATASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................T-----------------------AAAA--------------------------------------------------------TATAATTAAGTAAAAAAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.5010000000010
TAT-------G----------T-----------------------AAAA--------------------------------------------------------TATAATTAAGTAAAAAAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2820.5010000000010
............................................................................................................................TAA----------------------------GAA----AAACT--------------------------------------ATATAGT-------------------------A---AATATA-----------------------------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2590.3330200000100
.............................................................................................................................................................................................................................................................................................TAT------------------------------------------------------------------------------GTATA-----------------------TAATA------------------------------------------------------ATAAT------------------------------------------------------------------------A--------------------------------ATAATTA------.....................................................................................................................................................................................................................................................................................................................................2640.2510000000010
.............................................................................................................................AA----------------------------GAA----AAACT--------------------------------------ATATAGT-------------------------A---AATATA-----------------------------T................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2590.1110100000000
.............................................................................................................................AA----------------------------GAA----AAACT--------------------------------------ATATAGT-------------------------A---AATAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2390.1110100000000
.............................................................................................................................AA----------------------------GAA----AAACT--------------------------------------ATATAGT-------------------------A---AATATA-----------------------------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2490.1110100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA------------------------CATACATATACATAT--------------------A---TATA......................22110.0910100000000
droPer2
TAT-------G----------T-----------------------AAAA--------------------------------------------------------TATAATTAAATAAAAAAAATAA----------------------------GAA----AAACT--------------------------------------ATATAGT-------------------------A---AATATA-----------------------------TAATATATATAT------------------------------------------------------------------------------GTATA-----------------------TAATA------------------------------------------------------ATAAT------------------------------------------------------------------------A--------------------------------ATAATTA------TAATAATATATAATAT----AAT---------------------------------------------AT-------------------AA----------------------TATA---------------------------TAATA--TATA-------------TA----------TATAT----ATATATATATATA----TA--TATATATATA-------------------------------------------------------TAT--GTAATATATTGTT--A--TATTATATTAT--AT-ATACAGTATAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
AAT-------T----------A-----------------------ATT---------------------------------------------------------GAACAAA-----------ATAAAATAAATGT----------------------------------------------------------------------AATAGA-------------------------A---A--ATA---------------------------------------------------------------------------------CAATAAATAATAATAA-------------------------------------------------------------TCATCTAAT-TGGTGCTATTTGTTGAATTAAAAAATATTAATAATTT-----------------------------------------------------------------------------------------------------------------------------AATAAT--TTTA----------GTT--------TG----ACATACTAATGTTATATATTTAACTAATTTTTTGACTA----------------------------------------GTAT--------------------------------ATATATAT-ATATATA--------------TATATA----------------------------TATATATATATAT----A------------------------TATATATATATATA----------------------------------T--AT-ATATAATTAAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................AAT-TGGTGCTATTTGTTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.501001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT--TTTA----------GTT--------TG----ACATACCC.....................................................................................................................................................................................................................................................................................2030.331010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTAATGTTATATATTT........................................................................................................................................................................................................................................................................1930.331010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTT-----------------------------------------------------------------------------------------------------------------------------AATAAT--TTTA----------GTT--------TG----ACT..........................................................................................................................................................................................................................................................................................2430.331010000
...........................................................................................................................ATAAAATAAATGT----------------------------------------------------------------------AATAGA-------------------------A---A--.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2130.331010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATTAAAAAATATTAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1950.201000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAAT--TTTA----------GTT--------TG----ACC..........................................................................................................................................................................................................................................................................................1850.201010000
droBip1
AAA-------A----------A-----------------------AAA---------------------------------------------------------GGAAACAAA--------------A----------CAAAATAGTAAAATA----------------------------------GAACAAAT---------------TTTAAC----------------------------TG------------A---A------AAGAATAAATATAGATAC----------------------A------------TACAT--------------------------------------GTACA-----------------------CAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAAAAATACA-----TATA------------------T----ATATATATATATAAAATTATATA--TATTTA-------------------------------------------------------TAT--AA----AAAATAT--A--CAAAAAAAAAT--AT-AAAAAAATAAASizeHit CountTotal NormTotal
No Reads
droKik1
AAT-------T----------G-------------------------------------------------------TATACT---ATTTGAACTAAAAC-----GGAAACAAA-------------CCC-----------A---------------------------------------------------------------------------------------------------------------------------------------------AAAACAAACGAAATTGTTCTCTCAATAATTCATGAACAACAAACAAATTAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAA--------------------------------------------------------------------------------------------------T--TATATAT--------------ACAT----TTATATATATATACA--TCTATAT----A---------------------------------------------------TATAT----GAAATAA--AAACAAAAAAC--A--AT-ATAAAAAGAAASizeHit CountTotal NormTotal
No Reads
droFic1
ACG-------C----------A------------------------GAA--------------------------------------------------------GAAGCGAG-----------GAAAACAAAACCCATTAAATTATTTGTTGA----------------------------------GTA-----------------------------------------------------------------------------------TTTTAT---------------------------------------------------------------------------------------TAAA-----------------------TAATA------------------------------------------------------ATTAC------------------------------------------------------------------------G--------------------------------ATAATAA------TTATAAAATTTAA----------ATT--------GA------------------------------ACGA-------------------AATGCGAAAAACAAAAAC--------------T--------------------------------GAA-----TATA--CA------------TAT----ATATAAATATATATATATA--TA--------------------------------------------------T-TATATA-----TAA--AC----AAATTAT--T--TAATAGTTATG--CT-AAAAAATTATTSizeHit CountTotal NormTotal
No Reads
droEle1
ATA-------AAACGCCACCACAGCGTACCGCACCGCATCGAAGATGCGAGCGCATAACAATTGCAATAAAATTTAACGTGCA---TCGATAAAAAAGAATAT------------------------------------CA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACCGAATAAAAACAACAACGAAGCGGGAACGATCCGCTTGCCAGAAGAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTT------CATTAC----TTG----------TTT--------G-------------------------------AATG----AATGGGGAAAGTGCA------------AA--AAA----------AATT--------------------------------GCGTTGAT-ATATATA--------------TATATA----------------------------TATATATATATAT----A------------------------TACATATGTATATGT------------------------------------AT-GAAAAAATGGASizeHit CountTotal NormTotal
No Reads
droRho1
AAT-------T----------A-----------------------ATAA--------------------------------TT----------------------AATAATT------------AATA--------------------------------------------ATTAATAATTAATAATTAAT------------------------------------------------------A-----------------------------ATTAATAATTAA--------------------TAA----------------------------------------------------------TT-----------------------AATAA------------------------------------------------------TTAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATT----AATAATTAATAT------------------------ATATATATATAT--------------------------------ATATATAT-ATATATA--------------TATATA----------------------------TATATATATATAT----A------------------------TATATATATATATAT------------------------------------AT-ATATATATATASizeHit CountTotal NormTotal
No Reads
droBia1
ATC-------G----------C-----------------------AAGA--------------------------------------------------------AATGAATG-----------AAAAACAAAAACCT-TTACATACAAACTGA----------------------------------GAACAT-----------ATTCATCAAAT----------------------------G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGC------------------------------------------------------------------------C--------------------------------CTAGTTA------CATTACAGATTAGTTT-------------------------------------------------AACTA---------------------------------------------CATGA------------------------TAATA--TACA-------------TA----------CGTAT----ATAAATATATATA----TA--TTTTTTCATAT----A---------------------------------------------------T--AAATTATATATAC--A--CATTGCAT--A--AT-ATATATTTAAASizeHit CountTotal NormTotal
No Reads
droTak1
AAA-------C----------G------------------------AGT--------------------------------------------------------GATAACG------------AAAAA----------CAGAATGTCATATTT----------------------------------GAATAAGCTGAAATCATTCGAGTTATTC----------------------------G--------------------------------------AATCCATTCGATTTTCTTATA-------------------------------------------------------------------------------------------------------------------------TGACGTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAGGGAAAAATAGAAAA----T--------T--------------------------------ACA-----TTTT--TATATAT--------------ATAT----ATATATATATATACA--TACATA-------------------------------------------------------TGT--GT----ATAGTACACATAGTAC---------ACATAGTACACATASizeHit CountTotal NormTotal
No Reads
droEug1
ATA-------T----------A------------------------AAA--------------------------------------------------------TATAAA----------------------ATATAAAATA-----------------------------------------------------------------TAAA-------------------------A---T--ATA----------------C------AATATTTAATATAAATAT------------------------------------------------------------------------------AAATA-----------------------TA---------------------------------------------------------------------------------------------------------------------------------------------------AAT--------------------ATAA------ATATAAATATAAA----------TAT--------AAATATAA---------------ATAT----AAATA-------------------------------TA--AAT----ATAAATATAA--------------------------------A-------------TA--------------T----A--A--------------------------AT--------AT----AAATATAAATATAAATATAAATATAAATATAAATATA---AAT--AT----ACAATAT--A--CAATATACAATATAAAATATAAATATASizeHit CountTotal NormTotal
No Reads
dm3
CTA-------A----------T-----------------------GAAT--------------------------------------------------------CATAAGG------------CAAA-----A----------TTCAAATTAA------------------------------AATTAAAT-------------------GTTTGCTGTCTACAAATAGCCAGAGAAACAAAAAAATAGATTTCCTTGAA-----------------------------------------------------------------------------------------------------------------------------------------A-------------------------------------------------------------------ACAAAAGACAGCGAAAACAACAAATATACATTTTTTGGCGAGGTCTTTACAAATCATTCAGGGGGCGACTCTCTGTCCATATAGGCGAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTACAT-ATACATA--------------TATATA----------------------------TATATATATATAT----A------------------------TATATATATATATAT------------------------------------AT-ATATATATATASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................................................................................AAT-------------------GTTTGCTGTCTACAAATA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTCTCTGTCCATATAGGCG............................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACAAATCATTCAGGGGGCGACTC............................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTACAT-ATACAT............................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-ATACATA--------------TATATA----------------------------TATATAT....................................................................................................21200.4080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000080000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--------------TATATA----------------------------TATATATATAT................................................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAT-ATACATA--------------TATATA----------------------------TATATATATA.................................................................................................26180.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATA--------------TATATA----------------------------TATATATATATA...............................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-ATACATA--------------TATATA----------------------------TATATATATATAT----..........................................................................................27200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT-ATACATA--------------TATATA----------------------------TATATA.....................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACATA--------------TATATA----------------------------TATATATA...................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA--------------TATATA----------------------------TATATATATATAT----A------------------------TATA.............................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAT-ATACATA--------------TATATA----------------------------TATAT......................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATATAT------------------------------------AT-ATATATAT...20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GTT-------C----------T-----------------------AAG---------------------------------------------------------GAAGATTAACTAAAGAAAAGA------------------------AATAATTTAAGTACGTTGTTTAC-------------------------------------------G----------------------------AG------------G---C------AACATTAAAGGTACATGT----------------------A--------------------------------------------------------TTTA-----------------------TG---------------------------------------------------------------------------------------------------------------------------------------------------AAT--------------------ATA-------------------------------------------------------------------------------------------------AGGCA------AT--AAA----TTATATAT---------------------------------------------T--TATATATACGTATATATATATA----------TA--------TA--TATATAT--ATATATAT----ATATATATTTATAAGTACG------TATATATATATATA----------------------------------T--AT-ATAAATTCATASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................................................................................................................................................................................................................AAGGTACATGT----------------------A--------------------------------------------------------TTTA-----------------------TG---------------------------------------------------------------------------------------------------------------------------------------------------AAT--------------------ATA-------------------------------------------------------------------------------------------------AGGCA------................................................................................................................................................................................................................................2920.50100000010000000000
..................................................................................................................................................................................................................................................................................TTAAAGGTACATGT----------------------A--------------------------------------------------------TTTA-----------------------TG---------------------------------------------------------------------------------------------------------------------------------------------------AAT--------------------A..............................................................................................................................................................................................................................................................................................................................................2520.50100000001000000000
droSec2
ACC-------G----------T-----------------------AAAA--------------------------------------------------------TATGTTCCCGTTC------------------------------------------------------GCGGATG--------------------------------------------------CCTA-----GTAAGTGCGTCAGTCTCCTGCAAGAAAACACTTACAACTAACATAAATTT------------------------------------------------------------------------------ATATA-----------------------TT-----------------------------T-------------------------------------------------------------------------------------------------------------CCTCGGTTAACAGAGCCCACCAGTGTTGCCAATTT------TAAAAATGA---------------AA----AAATGAGT---------------------------------------------------AATCGGAAAACATT--GAA----GTTTATAATA--------------------------------GTATGTAT-ATATATA--------------TATATA----------------------------TATATATATATAT----A------------------------TATATATATATAGAT------------------------------------AT-ATATATATAGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
ATT-------G----------C-----------------------AGTA--------------------------------------------------------TGTATCCTGTTTA------------------------------------------------------CCCAATG--------------------------ATACAGA-------------------------A---AATATA-----------------------------TATAAAGTTTAT------------------------------------------------------------------------------GGAAA-----------------------AAGCA------------------------------------------------------GCAACAATGGCAAACACAAATGAGACGG--AAGCAG-----------------------------------------------------------------------------ATA-AG--------AAAATATATTAT----AATGTT--------GA------------------------------AC---------------------ATTGAGAAAACACGAAAAA----T--------G--------------------------------CTA-----TATA--CATA--------CAT------ATAT----ATATATATATATATA--TATATA-------------------------------------------------------TAT--------------------------------------TTATATTATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..T-------G----------C-----------------------AGTA--------------------------------------------------------TGTATCCTGTTTA------------------------------------------------------CCCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.50101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAATGGCAAACACAAATGAGACGG--A.................................................................................................................................................................................................................................................................................................................................................................................................................................2820.50100000010000
............................................................................................................ATCCTGTTTA------------------------------------------------------CCCAATG--------------------------ATA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.50100100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAATGAGACGG--AAGCAG-----------------------------------------------------------------------------ATA-AG--------AAA..............................................................................................................................................................................................................................................................................................................................2720.50100000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAACACAAATGAGACGG--AAGCAG-----------------------------------------------------------------------------...............................................................................................................................................................................................................................................................................................................................................2420.50100000010000
droEre2
TCA-------T----------G-------------GCCTTACTATGACAAGAAATTA--------------------ACATTT---ATAAAATAACACAACATAATAT-----A-----------------AAATTATATAAA-------------------------------------------------------------------TTATAT----------------------------ATG----------------T------AATATTATATA--TATATAAATTATATTGTGT-------AATTTATGTATATATACAT--------------------------------------ATATA-----------------------CAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATA---------CATATAT------------------------ATATATATATAT--------------------------------ATATATAT-ATATATA--------------TATATA----------------------------TATATATATATAT----A------------------------TATATATATATATTT------------------------------------AT-TTATATATATASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/18/2015 at 12:51 AM