ID:

dmo_1577

 Coordinate:

scaffold_6500:16706000-16706150 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-11.4

Flybase annnotation

exon [dmoj_GLEANR_1000:2]; CDS [Dmoj\GI10040-cds]; intron [Dmoj\GI10040-in]

Repeatable elements

NameClassFamilyStrand
Homo9DNAhAT-Ac+
Homo9DNAhAT-Ac+
mature
  1. scaffold_6496:870029-870054 +
  2. scaffold_6498:1898789-1898814 +
  3. dmo_1577  scaffold_6500:16706094-16706119 -
star
  1. scaffold_6496:870094-870118 +
  2. scaffold_6498:1898854-1898878 +
  3. dmo_1577  scaffold_6500:16706030-16706054 -
  4. scaffold_6540:1479492-1479516 -
  5. scaffold_6541:1041507-1041531 -

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AAAAAATGTGATTGCAATTTTGAATAAATTGGGATAGGTACTTTTTATTCCTTCCCAAAAAGAAAAAAGGTTGCGATGTTTTGCAAAACATCGATACATCATTCAACATCGGTATCAGCGAAAACATCGGAAAACATCGGTAAAAATTGGTAATAAAACATCGATGCTCGATGCATCGATGATTTCTTACATCACTACCAGCTACTGGCGGTGTGAAAAAACCTCATCGCTATCGCCCTGGTACAGTTGCT
*********************************************************************************.......(((((((..((((......((((((.....(((.....)))......))))))......))))........))))))).....******************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body		 V041
embryo
.....................................................................................................................................................................................................................TGAAAAAACCTCATCGCTATCGCCC............. 25 0 14 8.36 117 72 43 2 0
...................................................................................................................................................................................................................TGTGAAAAAACCTCATCGCTATCGCCC............. 27 0 14 8.00 112 74 38 0 0
.................................................................................TGCAAAACATCGATACATCATTCAAC................................................................................................................................................ 26 0 3 8.00 24 19 5 0 0
.................................................................................TGCAAAACATCGATACATCATTCAACA............................................................................................................................................... 27 0 3 5.33 16 13 3 0 0
.................TTTTGAATAAATTGGGATAGGTACTT................................................................................................................................................................................................................ 26 0 3 4.33 13 11 2 0 0
........................................................................................................................................................................................TCTTACATCACTACCAGCTACTGGC.......................................... 25 0 1 4.00 4 2 2 0 0
.................TTTTGAATAAATTGGGATAGGTACT................................................................................................................................................................................................................. 25 0 3 4.00 12 6 5 0 1
.................TTTTGAATAAATTGGGATAGGTAC.................................................................................................................................................................................................................. 24 0 3 2.33 7 4 3 0 0
.................TTTTGAATAAATTGGGATAGGTACTTT............................................................................................................................................................................................................... 27 0 3 2.33 7 7 0 0 0
........................................................................................................................................................................................TCTTACATCACTACCAGCTACTGGCGGTG...................................... 29 0 1 2.00 2 2 0 0 0
.................TTTTGAATAAATTGGGATAGGT.................................................................................................................................................................................................................... 22 0 3 2.00 6 5 0 1 0
...................TTGAATAAATTGGGATAGGTACTTT............................................................................................................................................................................................................... 25 0 3 1.67 5 3 1 0 1
...................................................................................................................................................................................................................TGTGAAAAAACCTCATCGCTATCGCC.............. 26 0 14 1.64 23 11 12 0 0
..................................................................................................................................................TTGGTAATAAAACATCGATGCTCGA................................................................................ 25 0 5 1.60 8 6 1 1 0
...................................................................................................................................AAACATCGGTAAAAATTGGTAATA................................................................................................ 24 0 5 1.60 8 6 0 2 0
.........................................................................................................................AAACATCGGAAAACATCGGTAAAAATT....................................................................................................... 27 0 6 1.33 8 4 4 0 0
.................TTTTGAATAAATTGGGATAGGTA................................................................................................................................................................................................................... 23 0 3 1.33 4 4 0 0 0
.................................................................................TGCAAAACATCGATACATCATTCAACATC............................................................................................................................................. 29 0 3 1.33 4 3 1 0 0
.........................................................................................................................AAACATCGGAAAACATCGGTAAAAA......................................................................................................... 25 0 8 1.13 9 9 0 0 0
........................................................................................................................................................................................TCCTACATCACTACCAGCTACTGGC.......................................... 25 1 1 1.00 1 0 1 0 0
.....................................................................................................................................................................................................................TGAAAAAACCTCATCGCTATCGCCCTGG.......... 28 0 14 1.00 14 13 1 0 0
........................................................................................................................................................................................TCTTACATCACTACCAGCTACTGGCGG........................................ 27 0 1 1.00 1 1 0 0 0
.................................................................................TTCAAAACATCGATACATCATTCAACA............................................................................................................................................... 27 1 3 1.00 3 0 3 0 0
........................................................................................................................................................................................TCTTACATCACTACCAGCTACTGGCG......................................... 26 0 1 1.00 1 1 0 0 0
................................................................................TTGCAAAACATCGATACATCATTCAAC................................................................................................................................................ 27 0 3 1.00 3 3 0 0 0
...............................................................................................................................................................................TCGATGATTTCTTACATCACTACCAGCT................................................ 28 0 1 1.00 1 1 0 0 0
..........................................................................................................................................................................................TTACATCACTACCAGCTACTGGCGGT....................................... 26 0 1 1.00 1 0 1 0 0
...........................................................................................................................................................................................TACATCACTACAAGCTACTGGCGG........................................ 24 1 1 1.00 1 1 0 0 0
....................................................................................................................................................................TGCTCGATGCATCGATGATTTCTTACA............................................................ 27 0 3 1.00 3 2 0 0 1
.....................................................................................................................................................................................................................TTAAAAAACCTCATCGCTATCGCCC............. 25 1 14 0.86 12 0 12 0 0
.........................................................................................................................AAACATCGGAAAACATCGGTAAAAAT........................................................................................................ 26 0 7 0.86 6 6 0 0 0
...................................................................................................................................................................................................................TTTGAAAAAACCTCATCGCTATCGCCC............. 27 1 14 0.79 11 0 11 0 0
..................TTTGAATAAATTGGGATAGGTA................................................................................................................................................................................................................... 22 0 3 0.67 2 2 0 0 0
..............................................................................TTTTGCAAAACATCGATACATCATTCAAC................................................................................................................................................ 29 0 3 0.67 2 1 1 0 0
.................TTTTGAATAAATTGGGATAGGTACTTTT.............................................................................................................................................................................................................. 28 0 3 0.67 2 2 0 0 0
.................................................................................TGCAAAACATCGATACATCATTCAA................................................................................................................................................. 25 0 3 0.67 2 1 1 0 0
...................TTGAATAAATTGGGATAGGTACTTTT.............................................................................................................................................................................................................. 26 0 3 0.67 2 2 0 0 0
....................TGAATAAATTGGGATAGGTACTTTTT............................................................................................................................................................................................................. 26 0 3 0.67 2 2 0 0 0
.....................................................................................................................................................................................................................TGAAAAAACCTCATCGCTATCGCC.............. 24 0 14 0.57 8 5 3 0 0
.........................................................................................................................AAACATCGGAAAACATCGGTAAAA.......................................................................................................... 24 0 8 0.50 4 3 1 0 0
..............................................................................................................................TCGGAAAACATCGGTAAAAATTGGTA................................................................................................... 26 0 4 0.50 2 1 1 0 0
..............................................................................................................................TCGGAAAACATCGGTAAAAATTGGTAA.................................................................................................. 27 0 4 0.50 2 2 0 0 0
................................................................................................................TATCAGCGAAAACATCGGAAAACATCGG............................................................................................................... 28 0 6 0.50 3 3 0 0 0
.........................................................................................................................AAACATCGGAAAACATCGGTAAAAATTGG..................................................................................................... 29 0 5 0.40 2 2 0 0 0
..................................................................................................................................................TTGGTAATAAAACATCGATGCTCGAT............................................................................... 26 0 5 0.40 2 1 0 1 0
...................................................................................................................................................TGGTAATAAAACATCGATGCTCGATG.............................................................................. 26 0 5 0.40 2 2 0 0 0
...................................................................................................................................AAACATCGGTAAAAATTGGTAATAAAACA........................................................................................... 29 0 5 0.40 2 2 0 0 0
...................................................................................................................................AAACATCGGTAAAAATTGGTAATAAAAC............................................................................................ 28 0 5 0.40 2 0 2 0 0
...................................................................................................................................AAACATCGGTAAAAATTGGTAAT................................................................................................. 23 0 5 0.40 2 2 0 0 0
.........................................................................................................................................................................................................................AAAACCTCATCGCTATCGCCCTGG.......... 24 0 14 0.36 5 3 2 0 0
......................................................................................................................................................................................................................GAAGAAACCTCATCGCTATCGCCC............. 24 1 14 0.36 5 0 5 0 0
..................TTTGAATAAATTGGGATAGGT.................................................................................................................................................................................................................... 21 0 3 0.33 1 1 0 0 0
.................TGTTGAATAAATTGGGATAGG..................................................................................................................................................................................................................... 21 1 3 0.33 1 0 1 0 0
.............................TGGGATAGGTACTTTTTATTCCTTCC.................................................................................................................................................................................................... 26 0 3 0.33 1 1 0 0 0
..................................................................................TGCAAACATCGATACATCATTCAAC................................................................................................................................................ 25 3 3 0.33 1 1 0 0 0
................................................................................TTGCAAAACATCGATACATCATTCAACAT.............................................................................................................................................. 29 0 3 0.33 1 1 0 0 0
.......................................................................................................................................................................TCGATGCATCGATGATTTCTTACATC.......................................................... 26 0 3 0.33 1 1 0 0 0
.................TGTTGAATAAATTGGGATAGGTACT................................................................................................................................................................................................................. 25 1 3 0.33 1 0 1 0 0
..................TTTGAATAAATTGGGATAGGTACT................................................................................................................................................................................................................. 24 0 3 0.33 1 0 1 0 0
....................TGAATAAATTGGGATAGGTACTTTT.............................................................................................................................................................................................................. 25 0 3 0.33 1 1 0 0 0
...................TTGAATAAATTGGGATAGGTAC.................................................................................................................................................................................................................. 22 0 3 0.33 1 1 0 0 0
.....................................................CCCAAAAAGAAAAAAGGTTGCGATG............................................................................................................................................................................. 25 0 3 0.33 1 0 1 0 0
.................TTTTGAATAAATTGGGATAGGTACTTGGT............................................................................................................................................................................................................. 29 2 3 0.33 1 1 0 0 0
..................................................................................GCAAAACATCGATACATCATTCAA................................................................................................................................................. 24 0 3 0.33 1 1 0 0 0
.........................................................................................................................AAACATCGGAAAACATCGGTAAAAATTG...................................................................................................... 28 0 6 0.33 2 2 0 0 0
.............................................................................TTTTTGCAAAACATCGATACATCA...................................................................................................................................................... 24 1 3 0.33 1 1 0 0 0
.................TTTTAAATAAATTGGGATAGGTACT................................................................................................................................................................................................................. 25 1 3 0.33 1 1 0 0 0
.....................GAATAAATTGGGATAGGTACTTTT.............................................................................................................................................................................................................. 24 0 3 0.33 1 1 0 0 0
.................TTTTGAATAAATTGGGATAGGTACTTC............................................................................................................................................................................................................... 27 1 3 0.33 1 1 0 0 0
.................................................................................TTCAAAACATCGATACATCATTCAACATC............................................................................................................................................. 29 1 3 0.33 1 0 1 0 0
..............................................................................TTTTGCAAAACATCGATACATCATTCAA................................................................................................................................................. 28 0 3 0.33 1 1 0 0 0
..................TTTGAATAAATTGGGATAGGTAC.................................................................................................................................................................................................................. 23 0 3 0.33 1 1 0 0 0
.................................................................................TTCAAAACATCGATACATCATTCAAC................................................................................................................................................ 26 1 3 0.33 1 0 1 0 0
....................TGAATAAATTGGGATAGGTACTTT............................................................................................................................................................................................................... 24 0 3 0.33 1 1 0 0 0
.................................................................................TGCAAAACATCGATACATCATTCTC................................................................................................................................................. 25 2 3 0.33 1 1 0 0 0
..................TTTGAATAAATTGGGATAGGTACTTTT.............................................................................................................................................................................................................. 27 0 3 0.33 1 1 0 0 0
............TGCAATTTTGAATAAATTGGGATAGG..................................................................................................................................................................................................................... 26 0 3 0.33 1 1 0 0 0
...................TTGAATAAATTGGGATAGGTACTTTC.............................................................................................................................................................................................................. 26 1 3 0.33 1 0 0 1 0
.................................................................................TGCAAAACATCGATACATCATTCATC................................................................................................................................................ 26 1 3 0.33 1 0 1 0 0
..................TGTGAATAAATTGGGATAGGTACT................................................................................................................................................................................................................. 24 1 3 0.33 1 0 1 0 0
....................................................TCCCAAAAAGAAAAAAGGTTGCGATGTT........................................................................................................................................................................... 28 0 3 0.33 1 0 1 0 0
..............................................................................TTTTGCAAAACATCGATACATCATTCA.................................................................................................................................................. 27 0 3 0.33 1 1 0 0 0
.................TTTTGAATAAATTGGGATA....................................................................................................................................................................................................................... 19 0 3 0.33 1 1 0 0 0
.................................................................................TGAAAAACATCGATACATCATTCAAC................................................................................................................................................ 26 1 3 0.33 1 0 1 0 0
...................................CGATCCTTTTTATTCCTTCCCAAAAAGA............................................................................................................................................................................................ 28 3 3 0.33 1 0 1 0 0
.............................................TATTCCTTCCCAAAAAGAAAAAAGG..................................................................................................................................................................................... 25 0 3 0.33 1 1 0 0 0
..................................................................................GCAAAACATCGATACATCATTCAAC................................................................................................................................................ 25 0 3 0.33 1 1 0 0 0
................................................................................TTGCAAAACATCGATACATCACTCAACA............................................................................................................................................... 28 1 3 0.33 1 1 0 0 0
..................................................................................GCAAAACATCGATACATCATTCAACA............................................................................................................................................... 26 0 3 0.33 1 1 0 0 0
..................TTTGAATAAATTGGGATAGGTACTTT............................................................................................................................................................................................................... 26 0 3 0.33 1 1 0 0 0
.................................................................................TGCAAAACATCGATACATCATTCAACAT.............................................................................................................................................. 28 0 3 0.33 1 0 1 0 0
.................TTTTGAATAAATTGGGATAGGTACC................................................................................................................................................................................................................. 25 1 3 0.33 1 0 1 0 0
.....................................GGACTTTTTATTCCTTCCCAAAAAGA............................................................................................................................................................................................ 26 1 3 0.33 1 0 1 0 0
............................................................................TGTTTTGCAAAACATCGATACATC....................................................................................................................................................... 24 0 3 0.33 1 1 0 0 0
...................TTGAATAAATTGGGATAGGTACT................................................................................................................................................................................................................. 23 0 3 0.33 1 1 0 0 0
...................................................TTCCCAAAAAGAAAAAAGGTTGCGATG............................................................................................................................................................................. 27 0 3 0.33 1 0 1 0 0
.....................................................................................................................................................................................................................TGAAAAAACCTCATCGCTATCGCCCTG........... 27 0 14 0.29 4 4 0 0 0
...............................................................................................................................................................................................................................TCATCGCTATCGCCCTGGTAC....... 21 0 15 0.27 4 0 4 0 0
.......................................................................................................................................ATCGGTAAAAATTGGTAATAAAACATC......................................................................................... 27 0 4 0.25 1 0 1 0 0
............TGCAATTTTGAATAAATTGGGATAGGC.................................................................................................................................................................................................................... 27 1 4 0.25 1 1 0 0 0
.....................................................................................................................................................................................................................TGAAAAAACCTCATCGCTATCGCCCT............ 26 0 14 0.21 3 2 1 0 0
...............................................................................................................................................................................................................................TCATCGCTATCGCCCTGGTACAGTTG.. 26 0 14 0.21 3 3 0 0 0
.........................................................................................................................................................................................................................AAAACCTCATCGCTATCGCCCTGGTAC....... 27 0 14 0.21 3 2 1 0 0
...................................................................................................................................................................................................................TTCGAAAAAACCTCATCGCTATCGCCC............. 27 2 14 0.21 3 0 3 0 0
...................................................................................................................................................................................................................TGCGAAAAAACCTCATCGCTATCGCCC............. 27 1 14 0.21 3 0 3 0 0
...................................................................................................................................................................................................................TGCGAAAAAACCTCATCGCTATCGCC.............. 26 1 14 0.21 3 0 3 0 0
......................................................................................................................................................................................................................GAAAAAACCTCATCGCTATCGCCC............. 24 0 14 0.21 3 3 0 0 0
...................................................................................................................................AAACATCGGTAAAAATTGGTAATAAA.............................................................................................. 26 0 5 0.20 1 1 0 0 0
..................................................................................................................................................TTGGTAATAAAACATCGATGCTCGATGCA............................................................................ 29 0 5 0.20 1 1 0 0 0
..................................................................................................................................................TTGGTAATAAAACATCGATGC.................................................................................... 21 0 5 0.20 1 1 0 0 0
....................................................................................................................................AACATCGGTAAAAATTGGTAATAAAACA........................................................................................... 28 0 5 0.20 1 1 0 0 0
...........................................................................................................................ACATCGGAAAACATCGGTAAAAATTGG..................................................................................................... 27 0 5 0.20 1 1 0 0 0
..............................................................................................................................TCGGAAAACATCGGTAAAAATTGGT.................................................................................................... 25 0 5 0.20 1 1 0 0 0
...................................................................................................................................................TGGTAATAAAACATCGATGCTCGAT............................................................................... 25 0 5 0.20 1 1 0 0 0
....................................................................................................................................AACATCGGTAAAAATTGGTAATATCT............................................................................................. 26 3 5 0.20 1 1 0 0 0
...................................................................................................................................AAACATCGGTAAAAATTGGTA................................................................................................... 21 0 5 0.20 1 1 0 0 0
....................................................................................................................................AACATCGGTAAAAATTGGTAATAAAA............................................................................................. 26 0 5 0.20 1 1 0 0 0
.........................................................................................................................AAACATCGGAAAACATCGGTAAA........................................................................................................... 23 0 16 0.19 3 2 1 0 0
.................................................................................................................ATCAGCGAAAACATCGGAAAACATC................................................................................................................. 25 0 6 0.17 1 0 0 1 0
..................................................................................................................TCAGCGAAAACATCGGAAAACATCGG............................................................................................................... 26 0 6 0.17 1 0 0 0 1
..........................................................................................................................................................AAAACATCGATGCTCGATGCATCG......................................................................... 24 0 6 0.17 1 1 0 0 0
..........................................................................................................................AACATCGGAAAACATCGGTAAAAATT....................................................................................................... 26 0 6 0.17 1 1 0 0 0
........................................................................................................AACATCGGTATCAGCGAAAACATCGGAA....................................................................................................................... 28 0 6 0.17 1 1 0 0 0
.......................................................................................................................................ATCGGTAAAAATTGGTAAT................................................................................................. 19 0 6 0.17 1 1 0 0 0
.........................................................................................................................TAACATCGGAAAACATCGGTAAAAATT....................................................................................................... 27 1 6 0.17 1 0 1 0 0
....................................................................................................................................................................................................................GTGAAAAAACCTCATCGCTATCGCCC............. 26 0 14 0.14 2 1 1 0 0
.........................................................................................................................AAACATCGGAAAACATCGGTAAAAATA....................................................................................................... 27 1 7 0.14 1 1 0 0 0
...................................................................................................................................................................................................................TTTGAAAAAACCTCATCGCTATCGCC.............. 26 1 14 0.14 2 0 2 0 0
...................................................................................................................................................................................................................TATGAAAAAACCTCATCGCTATCGCCC............. 27 1 14 0.14 2 0 2 0 0
.........................................................................................................................................................................................................................AAAACCTCATCGCTATCGCCCTG........... 23 0 14 0.14 2 2 0 0 0
....................................................................................................................................................................................................................................GCTATCGCCCTGGTACAGTTGCT 23 0 14 0.14 2 2 0 0 0
.........................................................................................................................................................................................................................AAAACCTCATCGCTATCGCCCTGGTA........ 26 0 14 0.14 2 0 2 0 0
..........................................................................................................................................................................................................................AAACCTCATCGCTATCGCCC............. 20 0 14 0.14 2 1 1 0 0
...............................................................................................................................................................................................................................TCATCGCTATCGCCCTGGTACAGTT... 25 0 14 0.14 2 2 0 0 0
...................................................................................................................................................................................................................TGTGAAAAAACCTCATCGCTATCGCCCT............ 28 0 14 0.14 2 2 0 0 0
..........................................................................................................................AACATCGGAAAACATCGGTAAAAAT........................................................................................................ 25 0 7 0.14 1 1 0 0 0
...................................................................................................................................................................................................................TGTGAAAAAACCTCATCGCTATCGC............... 25 0 14 0.14 2 2 0 0 0
......................................................................................................TCAACATCGGTATCAGCGAAAACATCGG......................................................................................................................... 28 0 7 0.14 1 1 0 0 0
.......................................................................................................CAACATCGGTATCAGCGAAAACATCGG......................................................................................................................... 27 0 7 0.14 1 1 0 0 0
.........................................................................................................................AAACATCGGAAAACATCGGTAAAAATC....................................................................................................... 27 1 15 0.13 2 2 0 0 0
.........................................................................................................................AAACATCGGAAAACATCGGTAACA.......................................................................................................... 24 1 8 0.13 1 0 0 1 0
.....................................................................................................................GCGAAAACATCGGAAAACATCGGC.............................................................................................................. 24 1 8 0.13 1 0 1 0 0
...........................................................................................................................ACATCGGAAAACATCGGTAAAAA......................................................................................................... 23 0 8 0.13 1 1 0 0 0
........................................................................................................AACATCGGTATCAGCGAAAACATCGG......................................................................................................................... 26 0 8 0.13 1 1 0 0 0
.......................................................................................................CAACATCGGTATCAGCGAAAACAT............................................................................................................................ 24 0 8 0.13 1 1 0 0 0
.....................................................................................................TGCAACATCGGTATCAGCGAAAACATC........................................................................................................................... 27 1 8 0.13 1 0 1 0 0
.........................................................................................................ACATCGGTATCAGCGAAAACATCG.......................................................................................................................... 24 0 9 0.11 1 1 0 0 0
...............................................................................................................................CGGAAAACATCGGTAAAAA......................................................................................................... 19 0 9 0.11 1 1 0 0 0
........................................................................................................................................................................................................GCTACTGGCGGTGTGAAA................................. 18 0 14 0.07 1 1 0 0 0
..........................................................................................................................................................................................................TACTGGCGGTGTGAAAAAACC............................ 21 0 14 0.07 1 0 1 0 0
.......................................................................................................................................................................................................................AAAAAACCTCATCGCTATCGCCC............. 23 0 14 0.07 1 1 0 0 0
.....................................................................................................................................................................................................................TTATAAAACCTCATCGCTATCGCCC............. 25 2 14 0.07 1 0 1 0 0
.....................................................................................................................................................................................................................TGATAAAACCTCATCGCTATCGCCC............. 25 1 14 0.07 1 0 1 0 0
....................................................................................................................................................................................................................GTGAAAAAACCTCATCGCTATCGCCCT............ 27 0 14 0.07 1 1 0 0 0
......................................................................................................................................................................................................................TGAAAAACCTCATCGCTATCGCC.............. 23 2 14 0.07 1 1 0 0 0
......................................................................................................................................................................................................................GAAAAAACCTCATCGCTATCGCCCTGG.......... 27 0 14 0.07 1 1 0 0 0
..................................................................................................................................................................................................................GTGTGAAAAAACCTCATCGCTATCGCC.............. 27 0 14 0.07 1 0 1 0 0
..............................................................................................................................................................................................................................CTCATCGCTATCGCCCTGGTACAG..... 24 0 14 0.07 1 0 1 0 0
.....................................................................................................................................................................................................................TTAAAAAACCTCATCGCTATCGC............... 23 1 14 0.07 1 0 1 0 0
.....................................................................................................................................................................................................................TGATAAAACCTCATCGCTATCGCCCTGG.......... 28 1 14 0.07 1 0 1 0 0
...................................................................................................................................................................................................................TGTGAAAAAACCTCATCGCTATCGCCA............. 27 1 14 0.07 1 1 0 0 0
..........................................................................................................................................................................................................TACAGGCGGTGTGAAAAAACCTCATCGC..................... 28 1 14 0.07 1 0 1 0 0
....................................................................................................................................................................................................................................GCTATCGCCCTGGTACAG..... 18 0 14 0.07 1 0 1 0 0
..........................................................................................................................................................................................................................AAACCTCATCGCTATCGCCCTG........... 22 0 14 0.07 1 0 1 0 0
....................................................................................................................................................................................................................................GCTATCGCCCTGGTACAGTTG.. 21 0 14 0.07 1 1 0 0 0
.....................................................................................................................................................................................................................TGAAAAAACCTCATCGCTATCGC............... 23 0 14 0.07 1 1 0 0 0
.....................................................................................................................................................................................................................TGAAAAAACCTCATCGCTATCCCCC............. 25 1 14 0.07 1 0 1 0 0
................................................................................................................................................................................................................................CATCGCTATCGCCCTGGTACAGTTG.. 25 0 14 0.07 1 1 0 0 0
........................................................................................................................................................................................................................AAAAACCTCATCGCTATCGCC.............. 21 0 14 0.07 1 0 1 0 0
...................................................................................................................................................................................................................TGTGAAAAAACCTCATCGCTATCG................ 24 0 14 0.07 1 1 0 0 0
...................................................................................................................................................................................................................TGTGAAAAAACCTCATCGT..................... 19 1 14 0.07 1 0 1 0 0
.................................................................................................................................................................................................................................ATCGCTATCGCCCTGGTACAGTTGC. 25 0 14 0.07 1 1 0 0 0
.....................................................................................................................................................................................................................TGAAAAACCCTCATCGCTATCGCCC............. 25 1 14 0.07 1 0 1 0 0
...................................................................................................................................................................................................................TGTGAAAAAACCTCACCGCTATCGCCC............. 27 1 14 0.07 1 1 0 0 0
.........................................................................................................................................................................................................................AAAACCTCATCGCTATCGC............... 19 0 14 0.07 1 1 0 0 0
...............................................................................................................................................................................................................................TCATCGCTATCGCCCTGGTACAGT.... 24 0 14 0.07 1 1 0 0 0
...................................................................................................................................................................................................................TGTGAAGAAACCTCATCGCTATCGCCC............. 27 1 14 0.07 1 1 0 0 0
..................................................................................................................................................................................................................GTGTGAAAAAACCTCATCGCTATCGCCCC............ 29 1 14 0.07 1 1 0 0 0
...................................................................................................................................................................................................................TGTGAAAAAACGTCATCGCTATCGCCC............. 27 1 14 0.07 1 1 0 0 0
.....................................................................................................................................................................................................................TGAAAAAACCTCATCGCTATCGAC.............. 24 1 14 0.07 1 0 1 0 0
...................................................................................................................................................................................................................TTTGAAAAAACCTCATCGCCATCGCCC............. 27 2 14 0.07 1 0 1 0 0
..................................................................................................................................................................................................................TTGTGAAAAAACCTCATCGCTATCGCCC............. 28 1 14 0.07 1 1 0 0 0
.......................................................................................................................................................................................................................AAAAAACCTCATCGCTATCGCCCT............ 24 0 14 0.07 1 0 1 0 0
.................................................................................................................................................................................................................................ATCGCGATCGCCCTGGTACAG..... 21 1 14 0.07 1 0 1 0 0
.................................................................................................................................................................................................................................ATCGCTATCGCCCTGGTACAGT.... 22 0 14 0.07 1 0 1 0 0
.........................................................................................................................................................................................................................AAAACCTCATCGCTATCGCCCT............ 22 0 14 0.07 1 1 0 0 0
...........................................................................................................................................................................................................................AACCTCATCGCTATCGCCC............. 19 0 14 0.07 1 0 1 0 0
...................................................................................................................................................................................................................TGTGAAAAAACCTCATCGCTATCCCC.............. 26 1 14 0.07 1 1 0 0 0
....................................................................................................................................................................................................................GTGAAAAAACCTCATCGCTATCGCC.............. 25 0 14 0.07 1 1 0 0 0
.....................................................................................................................................................................................................................TAAAAAAACCTCATCGCTATCGCCC............. 25 1 14 0.07 1 1 0 0 0
.....................................................................................................................................................................................................CCAGCTACTGGCGGTGTG.................................... 18 0 14 0.07 1 1 0 0 0
...................................................................................................................................................................................................................TGTGAAAAAACCTCATCGCTAT.................. 22 0 14 0.07 1 1 0 0 0
....................................................................................................................................................................................................................TGAAAAAAACCTCATCGCTATCGCC.............. 25 3 14 0.07 1 0 1 0 0
.............................................................................................................................................................................................................................CCTCATCGCTATCGCCCTGGTACAG..... 25 0 14 0.07 1 0 1 0 0
..................................................................................................................................................................................................................CTGTGAAAAAACCTCATCGCTATCGCCC............. 28 1 14 0.07 1 1 0 0 0
...................................................................................................................................................................................................................TATGAAAAAACCTCATCGCTATCGCC.............. 26 1 14 0.07 1 0 1 0 0
.........................................................................................................................................................................................................................AAAACCTCATCGCTATCGCCC............. 21 0 14 0.07 1 0 1 0 0
.....................................................................................................................................................................................................................TGAAAAAACCTAATCGCTATCGCCC............. 25 1 14 0.07 1 1 0 0 0
...............................................................................................................................................................................................................................CGATCGCTATCGCCCTGGTACAGTTGC. 27 2 14 0.07 1 0 1 0 0
.....................................................................................................................................................................................................................................CTATCGCCCTGGTACAGTTGC. 21 0 14 0.07 1 0 1 0 0
...............................................................................................................................................................................................................................TCATCGCTATCGCCCTGGTACAGTTGC. 27 0 14 0.07 1 0 1 0 0
.....................................................................................................................................................................................................................TGCAAAAACCTCATCGCTATCGCC.............. 24 1 14 0.07 1 0 1 0 0
............................................................................................................................................................................................................................ACCTCATCGCTATCGCCCTGGTACAG..... 26 0 14 0.07 1 1 0 0 0
.....................................................................................................................................................................................................................TGAAAAAACCTCATCGCTA................... 19 0 14 0.07 1 1 0 0 0
..............................................................................................................................................................................................................................CTCATCGCTATCGCCCTGGTACAGT.... 25 0 14 0.07 1 1 0 0 0
.........................................................................................................................................................................................................................AAAACCTCATCGCTATCGCCCTGGT......... 25 0 14 0.07 1 1 0 0 0
.....................................................................................................................................................................................................................TTAAAAAACCTAATCGCTATCGCCC............. 25 2 14 0.07 1 0 1 0 0
.....................................................................................................................................................................................................................TGAAAAAACCTCATCGCTATC................. 21 0 14 0.07 1 1 0 0 0
...................................................................................................................................................................................................................TGTGAAAAAAACTCATCGCTATCGCCC............. 27 1 14 0.07 1 0 1 0 0
...................................................................................................................................................................................................................TGTGAAAAAACCTCATCGCTATCGCCCA............ 28 1 14 0.07 1 1 0 0 0
................................................................................................................................................................................................................................CATCGCTATCGCCCTGGT......... 18 0 15 0.07 1 0 1 0 0
..............................................................................................................................................................................................................................CTCATCGCTATCGCCCTGGT......... 20 0 15 0.07 1 0 0 1 0
...............................................................................................................................................................................................................................TCATCGCTATCGCCCCGGCAC....... 21 2 15 0.07 1 0 1 0 0
.........................................................................................................................AAGCATCGGAAAACATCGGTAAAAATC....................................................................................................... 27 2 15 0.07 1 1 0 0 0
..............................................................................................................................................................................................................................CGCATCGCTATCGCCCTGGTAC....... 22 1 15 0.07 1 0 1 0 0
..........................................................................................................................AACATCGGAAAACATCGGT.............................................................................................................. 19 0 17 0.06 1 1 0 0 0
.........................................................................................................................AAACATCGGAAAACATCGGTA............................................................................................................. 21 0 17 0.06 1 1 0 0 0
.........................................................................................................................AAACATCGGAAAACATCGGTAA............................................................................................................ 22 0 17 0.06 1 1 0 0 0
........................................................................................................................................................................................................................GGGAACCTCATCGCTATCGCC.............. 21 3 17 0.06 1 1 0 0 0
.........................................................................................................................AAACATCGGAAAACATCGG............................................................................................................... 19 0 20 0.05 1 1 0 0 0

Anti-sense strand reads

TTTTTTACACTAACGTTAAAACTTATTTAACCCTATCCATGAAAAATAAGGAAGGGTTTTTCTTTTTTCCAACGCTACAAAACGTTTTGTAGCTATGTAGTAAGTTGTAGCCATAGTCGCTTTTGTAGCCTTTTGTAGCCATTTTTAACCATTATTTTGTAGCTACGAGCTACGTAGCTACTAAAGAATGTAGTGATGGTCGATGACCGCCACACTTTTTTGGAGTAGCGATAGCGGGACCATGTCAACGA
********************************************************************************.......(((((((..((((......((((((.....(((.....)))......))))))......))))........))))))).....********************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V110
male body		 M060
embryo
 V041
embryo
 V049
head
 V056
head
...................................................................................................................................................................................................ATGATCGCTGCCCGCCACAC.................................... 20 3 7 3.00 21 15 4 0 2 0 0
..........................................................................................................GTAGCCATAGTCGCTTTTGTAGCCT........................................................................................................................ 25 0 6 0.67 4 4 0 0 0 0 0
.........................................................................................................TGTAGCCATAGTCGCTTTTGTAGCCT........................................................................................................................ 26 0 6 0.50 3 3 0 0 0 0 0
...........................................................................................................TAGCCATAGTCGCTTTTGTAGCCT........................................................................................................................ 24 0 6 0.33 2 2 0 0 0 0 0
............................................................................................................................................................................................TGCAATGGTGGTCGATGACC........................................... 20 3 3 0.33 1 0 1 0 0 0 0
...TTTACACTAACGTTAAAACTTATT................................................................................................................................................................................................................................ 24 0 6 0.33 2 1 0 1 0 0 0
..................................................................................CGTTTTGTAGCTATGTAGTAAGTT................................................................................................................................................. 24 0 3 0.33 1 1 0 0 0 0 0
............................................................................................................................................................................................TGCAATGGTGGTCGATGAC............................................ 19 3 10 0.30 3 3 0 0 0 0 0
..................................................................TTCCAACGCTACAAAACGTTTTGT................................................................................................................................................................. 24 0 5 0.20 1 1 0 0 0 0 0
..................................................................................................................................................AACCATTATTTTGTAGCTACGAG.................................................................................. 23 0 5 0.20 1 0 0 1 0 0 0
...................................................................................................................................................ACCATTAGTTTGTAGCTCC..................................................................................... 19 2 5 0.20 1 0 0 0 0 1 0
..........................................................................................AGCTATGTAGGAAGGTGTAGT............................................................................................................................................ 21 3 6 0.17 1 0 0 0 0 0 1
..TTTTACACTAACGTTAAAACTTATT................................................................................................................................................................................................................................ 25 0 6 0.17 1 1 0 0 0 0 0
....TTACACTAACGTTAAAACTTATT................................................................................................................................................................................................................................ 23 0 6 0.17 1 1 0 0 0 0 0
...TTTACACTAACGTTAAAACTTATTC............................................................................................................................................................................................................................... 25 1 6 0.17 1 0 0 1 0 0 0
....TTACACTAACGTTAAAACTTATTTA.............................................................................................................................................................................................................................. 25 0 6 0.17 1 1 0 0 0 0 0
......................................................................................................................................................................................................GTCGATGACCGCCACACTTTTTT.............................. 23 0 14 0.14 2 2 0 0 0 0 0
......................................................................................................................GCTTTTGTAGCCTTTTGTAGCCA.............................................................................................................. 23 0 8 0.13 1 1 0 0 0 0 0
.....................................................................................................................CGCTTTTGTAGCCTTTTGTAGCCA.............................................................................................................. 24 0 8 0.13 1 0 0 1 0 0 0
.....................................................................................................................CGCTTTTGTAGCCTTTTGTAGCC............................................................................................................... 23 0 8 0.13 1 1 0 0 0 0 0
..........................................................................................................GTAGCCATAGTCGCTTTTGTAGCC......................................................................................................................... 24 0 8 0.13 1 1 0 0 0 0 0
.......................................................................................................................CTTTTGTAGCCTTTTGTAGCCA.............................................................................................................. 22 0 8 0.13 1 1 0 0 0 0 0
....................................................................................................................................................................................................TGATCGCTGTCCGCCACAC.................................... 19 3 20 0.10 2 2 0 0 0 0 0
.................................................................................................................................................TCACCATTATTAAGTAGCTA...................................................................................... 20 3 11 0.09 1 1 0 0 0 0 0
..........................................................................................................GTAGCCATAGTCGCTTTTG.............................................................................................................................. 19 0 11 0.09 1 1 0 0 0 0 0
............................................................................................................................................................................................................GACCGCCACACTTTTTTGGAGTA........................ 23 0 14 0.07 1 1 0 0 0 0 0
..............................................................................................................................................................................................................CCGCCACACTTTTTTGGAGTA........................ 21 0 14 0.07 1 0 0 1 0 0 0
.....................................................................................................................................................................................................GGTCGATGACCGCCACACTTTTTTGG............................ 26 0 14 0.07 1 1 0 0 0 0 0
...................................................................................................................................................................................................................................ACGATAGCGGGACCATGTCAAC.. 22 1 14 0.07 1 1 0 0 0 0 0
.....................................................................................................................................................................................................GGTCGGTGGCCGCCACACTTT................................. 21 2 14 0.07 1 1 0 0 0 0 0
......................................................................................................................................................................................................GTCGATGACCGCCACACTTTTT............................... 22 0 14 0.07 1 1 0 0 0 0 0
...................................................................................................................................................................................................................................GCGATAGCGGGACCATGTCAACG. 23 0 14 0.07 1 0 1 0 0 0 0
...................................................................................................................................................................................................................................GCGATAGCGGGACCATGTCA.... 20 0 14 0.07 1 0 0 1 0 0 0
........................................................................................................................................................................................................CGATGACCGCCACACTTTTTTGG............................ 23 0 14 0.07 1 0 0 1 0 0 0
.....................................................................................................................................................................................................................................GATAGCGGGACCATGTCGACG. 21 1 14 0.07 1 1 0 0 0 0 0
.............................................................................................................................................................................................................................GGAGTAGCGATAGCGGGACCATGT...... 24 0 14 0.07 1 1 0 0 0 0 0
.............................................................................................................................................................................................................................GGAGTAGCGATAGCGGGACCA......... 21 0 15 0.07 1 0 1 0 0 0 0
.............................................................................................................................................................................................................................GGAGTAGCGATAGCGGGA............ 18 0 15 0.07 1 0 0 0 1 0 0
...................................................................................................................................................ACCATTAGATTGTAGCTCC..................................................................................... 19 3 18 0.06 1 0 0 0 0 1 0
.....................................................................................................................................................................................................GCTCGATGCCCGCTACACT................................... 19 3 20 0.05 1 0 0 0 0 0 1
...................................................................................................................................................ACCATTAGGTTGTAGCT....................................................................................... 17 2 20 0.05 1 0 0 0 0 0 1
....................................................................................................................................................................................................AGGTCGATTACCGCCACGCT................................... 20 3 20 0.05 1 0 0 0 0 1 0
................................................................................AATGTTTAGTGGCTATGTAG....................................................................................................................................................... 20 3 20 0.05 1 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6500:16705950-16706200 - dmo_1577 AAAAAAT---------------------GTGATTGCAATTTTGAA---TAAATTGGGATAGGTACTTTTTATTCCTTCC-----CAAAAAGAAAAA-------------------------------------AGGTTGCGATG-TTTTGCAAAACATCGATACATCATTCAACATCGGTATCAG--CGAAA-ACATCGGAAAACATCGGTAAAAATTGGTAA-TAAAACATCGATGCTCGATGCATCGATGATTT--CTTACATCACTACC-AGCTACTGGCG--------------------------------GTGTGAAAAAACCTCATCGCT--ATCGCCCTGGTACAGTTGCT
droVir3 scaffold_12963:8591428-8591487 + TCGG---------------------CA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CC-ATCCACGGGCG--------------------------------GTGTAAAGAAGCCTCATCGCT--ATCGCCCTGGCACGGTGGCA
droGri2 scaffold_4909:289-342 + CCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACCGGTG--------------------------------GTGTGAAGAAACCTCATCGCT--ATCGTCCCGGTACAGTTGCA
droWil2 scf2_1100000004585:7662140-7662338 + AAAG---------------------TTTTTAAGAGCTTTTTAA--AGACAGCTTCATATAACTATATGATAGAACTTGATAAGCGAAAA---AT----------------------------------------AAGATCAATGTTTTAGTAAAACATTGATACATCGCTGAACATCGACATCAA--CAAAA-ACATCAGTAAACATCGAAAAACATCGCCAA-GAGAACATCGATGTTCGATGCATCGATGTTTTTTTTTACATCATT------------------------------------------------------------------------------------------
dp5 3:2970767-2970973 - ATTG---------------------TATTTATGAGTATTTGTGTA---TGA-----GAT-TGTACTGTATATTCTGTTA-----TATTA---ATAA-------------------------------------GGTATACGATG-TTTTGCAAAACATCGATACATCGCTCAACATCGGTACCAG--CAAAA-ACACCGGAAAACATC----------GGCAA-AAAAACATCGATGCTCGATGCATCGATGTGTT--TTTACATCACTAAAC-GGAACTGTTC---------------------TTGTGTAAAAAA--------------------------------------CACA
droPer2 scaffold_35:624796-624985 - CAAAAAT---------------------TGCATTGCAATTTTGTA---TAAATTAGGATAGGTACTTTTTATACCGTCC-----CAAAAACACGAA----------------------------------------------GGATTTTGCAAAACATCGATACATCACTCAACATCGGTAGCAG--CAAAA-ACATCGGAAAACATCAGTAAACATCGGAAG-AAAAACATCGATGCTCGATGCATCGATGTGT---TTTACATCACTACC---------------------------------------------------------------------------------------
droAna3 scaffold_13099:2614606-2614724 + C-------------------------------------------------------------------------------------------------------------------------------------------GATG-TTTCATTAAACATCGATATATCGGTTAACATCGATATCAA--CAAAT-ACCTCGGAAAACATC----------CCAAAAACAAACATCGATACTCCAAGCATCGATTTTT---TCAGCATCACTACT------------------------------------------------------------------------------------AGC
droBip1 scf7180000393980:21902-22026 + C-------------------------------------------------------------------------------------------------------------------------------------------GATG-TTTCGAGAAACATCGATGCATCGGCTAACATCGGTATAAA--AAAAA-ACATCGAAAAACCTCGGAAAAAATCGCTAAGAAAAACATCGATGTTCGATGCATCGATGTTT---TCAGCATCATTAC----------------------------------------------------------------------------------------
droKik1 scf7180000299863:17183-17435 + AACAAATCTTTTATAGCAGTCGTTCAATTTGTAAGTAGTTATC-----------------------------------------CATAGGCACAAAAAATTAAAAATAAATAAATAATAAATATTGTGGAATCAGAGACCGATG-TTTTGTCAAACATCGATGCATCGGTTAACATCGACATCAA--CAAAA-ACATCGAAAATCATCGGAAAACATCGCTAA-AAAAACATCGATGCTCGATGCATCGATGTTT---TTAGCATCACTATT-----GGCAACG--------------------------------TTAAATGAAAA----------------CCCTGGTACAGT----
droFic1 scf7180000453800:116627-116725 + C-----------------------------------------------------------------------------------------------------------------------------------------------------------ATCGATATAACACTCAACATCGATATTAT--CAAGA-ACATCGACAAACTTC----------TTTAA-AAAGATATCGATGTTCGATGAATCGGTATTT---GTACCATCACTAC----------------------------------------------------------------------------------------
droEle1 scf7180000491006:2574452-2574518 - TC-------------------------------------------------------------------------------------------------------------------------------------------GTA-AATCG-------------------------GCG--------------------------------------------------------------------------------------------CC-ATCCACTGGCG--------------------------------GAGTGAAGAAGCCCCATCGTT--ATCGTCCCGGTACCGTGGCT
droRho1 scf7180000765209:17-70 - CCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCACCGGAG--------------------------------GCGTGAAGAAGCCCCATCGCT--ATCGCCCCGGAACTGTGGCC
droBia1 scf7180000302408:1791553-1791676 + AAATA------------------------AAAACGATTT------AA----------------------------------------------------------------------------------------CCGCCGATT-TTTGGCAACACATCGATGGACCGCCCAATATCGATATCAT------------TGGCGGCTATC----------GG--A-TAAAACATCGATGGCCGATGCATCGATGTTTC--TTGACACCACTA-----------------------------------------------------------------------------------------
droTak1 scf7180000414410:11311-11422 - A--------------------------------------------------------------------------------------------------------------------------------------------------------AACATCGATGCATCGATAAACATCGGCATAAC--ATAAA-ACATCGAAAAACATCGGAAAACATCGGCCA-AAAAACATCGATGCTCGATGCATCGATGTTTT--TTTACATCACTA-----------------------------------------------------------------------------------------
droEug1 scf7180000408755:24656-24776 - C-------------------------------------------------------------------------------------------------------------------------------------------GATG-TTTCGAGAAACATCGATGCATCGGTTAACATCGGTATAAA--CAAAA-CCATCGAAAAACATC----------GCTAAGAAAAACATCGATGTTCGAAGCATCGATGTTT---TCAGCATCACTAAC----------------------------------------------------------------------------------TAGCT
dm3 chr2R:17389415-17389613 + AAGAAAT---------------------GTAAAGGTTTT------AGACACC-AATAATAAGTAACATTTACATTTTT--AAGTCAAAAATATTTA-------------------------------------AGAATCCGATG-TTTTGATAAGCGACGATGTATCGCTGGTCGGCGATACTATTTCTAAA-ATATCGGCTAGC-TCGAT-AGCACCTATAT-GAAAACATCGATTCCCGATGCATCGATGTTTC--TCCCCATCACTATC--------------------------------------------------------------------------------------A
droSim2 x:17362473-17362658 + CAGT---------------------TTTC----------------------------------------------------------------------------------------------------------------------TGTGAAACGACCGATGTGT-----GACATCGATATCAA--GCAAA-ACATCGAAACACAGA----------GC-CC-CAAAACATCGCTGCTGGATGCATCGATGTTAT--TTTACATCACTAGGC-G---AGCGAGCCAGCAATAAGCGAACGATTTTTGCGCAAAAAC-------GGTCTTTATCAATAAATCGCTG-CGCACGATCGCT
droSec2 scaffold_1:7758179-7758319 + G-----------------------------------------------------------------------------------------------------------------------------------------------------CAAAACATCGATACGTTTCCAAGCATCGATATCAA--CAAGAAATATCGAAAGTTACT----------GG-CA-CGGGACATCGATTCTCGATGCATCGATGTATT--CTTACATCCCTAGCC---TGACTGAG--------------------------------GTGCGTAGAGTTTCCAGTAAT--ATCG----------------
droYak3 2R:11790286-11790405 - C-------------------------------------------------------------------------------------------------------------------------------------------GATG-TTTTTAAAATCTACGATGTATCGTTGGTCAGCGATATTA---CAGAA-ATAACGGCCAACATCGAT-AGCAGCTTT---CAGAACATCGATTCTCGATGCATCGATGTGCC--TTCACATCACTA-----------------------------------------------------------------------------------------
droEre2 scaffold_4845:11534418-11534540 + C-------------------------------------------------------------------------------------------------------------------------------------------GATG-TTTTGAAAATCAACGATGTATCGCTGGTCGGCGATATTA---CAGAA-ATATCGGCTAACATCGAT-AACATCTTT---GAAAACATCGATTCTCGATGCATCGATGTTTT--TTCACATCACTATC--------------------------------------------------------------------------------------A

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
AAAAAAT---------------------GTGATTGCAATTTTGAA---TAAATTGGGATAGGTACTTTTTATTCCTTCC-----CAAAAAGAAAAA-------------------------------------AGGTTGCGATG-TTTTGCAAAACATCGATACATCATTCAACATCGGTATCAG--CGAAA-ACATCGGAAAACATCGGTAAAAATTGGTAA-TAAAACATCGATGCTCGATGCATCGATGATTT--CTTACATCACTACC-AGCTACTGGCG--------------------------------GTGTGAAAAAACCTCATCGCT--ATCGCCCTGGTACAGTTGCTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...............................................................................................................................................................................................................................................................................................................................TGAAAAAACCTCATCGCT--ATCGCCC.............25148.3611772000432
.............................................................................................................................................................................................................................................................................................................................TGTGAAAAAACCTCATCGCT--ATCGCCC.............27148.0011274000380
....................................................................................................................................................TGCAAAACATCGATACATCATTCAAC.........................................................................................................................................................................................2638.00241900050
....................................................................................................................................................TGCAAAACATCGATACATCATTCAACA........................................................................................................................................................................................2735.33161300030
......................................TTTTGAA---TAAATTGGGATAGGTACTT....................................................................................................................................................................................................................................................................................................2634.33131100020
...............................................................................................................................................................................................................................................................T--CTTACATCACTACC-AGCTACTGGC............................................................................2514.004200020
......................................TTTTGAA---TAAATTGGGATAGGTACT.....................................................................................................................................................................................................................................................................................................2534.0012610050
......................................TTTTGAA---TAAATTGGGATAGGTAC......................................................................................................................................................................................................................................................................................................2432.337400030
......................................TTTTGAA---TAAATTGGGATAGGTACTTT...................................................................................................................................................................................................................................................................................................2732.337700000
...............................................................................................................................................................................................................................................................T--CTTACATCACTACC-AGCTACTGGCG--------------------------------GTG........................................2912.002200000
......................................TTTTGAA---TAAATTGGGATAGGT........................................................................................................................................................................................................................................................................................................2232.006500001
........................................TTGAA---TAAATTGGGATAGGTACTTT...................................................................................................................................................................................................................................................................................................2531.675310010
.............................................................................................................................................................................................................................................................................................................................TGTGAAAAAACCTCATCGCT--ATCGCC..............26141.642311000120
........................................................................................................................................................................................................................TTGGTAA-TAAAACATCGATGCTCGA.....................................................................................................................2551.608600011
.........................................................................................................................................................................................................AAACATCGGTAAAAATTGGTAA-TA.....................................................................................................................................2451.608600002
..............................................................................................................................................................................................AA-ACATCGGAAAACATCGGTAAAAATT.............................................................................................................................................2761.338400040
......................................TTTTGAA---TAAATTGGGATAGGTA.......................................................................................................................................................................................................................................................................................................2331.334400000
....................................................................................................................................................TGCAAAACATCGATACATCATTCAACATC......................................................................................................................................................................................2931.334300010
..............................................................................................................................................................................................AA-ACATCGGAAAACATCGGTAAAAA...............................................................................................................................................2581.139900000
...............................................................................................................................................................................................................................................................................................................................TGAAAAAACCTCATCGCT--ATCGCCCTGG..........28141.00141300010
...............................................................................................................................................................................................................................................................T--CTTACATCACTACC-AGCTACTGGCG--------------------------------G..........................................2711.001100000
...............................................................................................................................................................................................................................................................T--CTTACATCACTACC-AGCTACTGGCG--------------------------------...........................................2611.001100000
...................................................................................................................................................TTGCAAAACATCGATACATCATTCAAC.........................................................................................................................................................................................2731.003300000
......................................................................................................................................................................................................................................................TCGATGATTT--CTTACATCACTACC-AGCT..................................................................................2811.001100000
...................................................................................................................................................................................................................................................................TTACATCACTACC-AGCTACTGGCG--------------------------------GT.........................................2611.001000010
...........................................................................................................................................................................................................................................TGCTCGATGCATCGATGATTT--CTTACA...............................................................................................2731.003210000
..............................................................................................................................................................................................AA-ACATCGGAAAACATCGGTAAAAAT..............................................................................................................................................2670.866600000
.......................................TTTGAA---TAAATTGGGATAGGTA.......................................................................................................................................................................................................................................................................................................2230.672200000
.................................................................................................................................................TTTTGCAAAACATCGATACATCATTCAAC.........................................................................................................................................................................................2930.672100010
......................................TTTTGAA---TAAATTGGGATAGGTACTTTT..................................................................................................................................................................................................................................................................................................2830.672200000
....................................................................................................................................................TGCAAAACATCGATACATCATTCAA..........................................................................................................................................................................................2530.672100010
........................................TTGAA---TAAATTGGGATAGGTACTTTT..................................................................................................................................................................................................................................................................................................2630.672200000
.........................................TGAA---TAAATTGGGATAGGTACTTTTT.................................................................................................................................................................................................................................................................................................2630.672200000
...............................................................................................................................................................................................................................................................................................................................TGAAAAAACCTCATCGCT--ATCGCC..............24140.578500030
..............................................................................................................................................................................................AA-ACATCGGAAAACATCGGTAAAA................................................................................................................................................2480.504300010
....................................................................................................................................................................................................TCGGAAAACATCGGTAAAAATTGGTA.........................................................................................................................................2640.502100010
....................................................................................................................................................................................................TCGGAAAACATCGGTAAAAATTGGTAA-.......................................................................................................................................2740.502200000
...................................................................................................................................................................................TATCAG--CGAAA-ACATCGGAAAACATCGG.....................................................................................................................................................2860.503300000
..............................................................................................................................................................................................AA-ACATCGGAAAACATCGGTAAAAATTGG...........................................................................................................................................2950.402200000
........................................................................................................................................................................................................................TTGGTAA-TAAAACATCGATGCTCGAT....................................................................................................................2650.402100001
.........................................................................................................................................................................................................................TGGTAA-TAAAACATCGATGCTCGATG...................................................................................................................2650.402200000
.........................................................................................................................................................................................................AAACATCGGTAAAAATTGGTAA-TAAAACA................................................................................................................................2950.402200000
.........................................................................................................................................................................................................AAACATCGGTAAAAATTGGTAA-TAAAAC.................................................................................................................................2850.402000020
.........................................................................................................................................................................................................AAACATCGGTAAAAATTGGTAA-T......................................................................................................................................2350.402200000
...................................................................................................................................................................................................................................................................................................................................AAAACCTCATCGCT--ATCGCCCTGG..........24140.365300020
.......................................TTTGAA---TAAATTGGGATAGGT........................................................................................................................................................................................................................................................................................................2130.331100000
.....................................................TGGGATAGGTACTTTTTATTCCTTCC-----...................................................................................................................................................................................................................................................................................2630.331100000
...................................................................................................................................................TTGCAAAACATCGATACATCATTCAACAT.......................................................................................................................................................................................2930.331100000
..............................................................................................................................................................................................................................................TCGATGCATCGATGATTT--CTTACATC.............................................................................................2630.331100000
.......................................TTTGAA---TAAATTGGGATAGGTACT.....................................................................................................................................................................................................................................................................................................2430.331000010
.........................................TGAA---TAAATTGGGATAGGTACTTTT..................................................................................................................................................................................................................................................................................................2530.331100000
........................................TTGAA---TAAATTGGGATAGGTAC......................................................................................................................................................................................................................................................................................................2230.331100000
.............................................................................CC-----CAAAAAGAAAAA-------------------------------------AGGTTGCGATG-......................................................................................................................................................................................................................2530.331000010
.....................................................................................................................................................GCAAAACATCGATACATCATTCAA..........................................................................................................................................................................................2430.331100000
..............................................................................................................................................................................................AA-ACATCGGAAAACATCGGTAAAAATTG............................................................................................................................................2860.332200000
..........................................GAA---TAAATTGGGATAGGTACTTTT..................................................................................................................................................................................................................................................................................................2430.331100000
......................................TTTTGAA---TAAATTGGGATAGGTACTTC...................................................................................................................................................................................................................................................................................................2730.331100000
.................................................................................................................................................TTTTGCAAAACATCGATACATCATTCAA..........................................................................................................................................................................................2830.331100000
.......................................TTTGAA---TAAATTGGGATAGGTAC......................................................................................................................................................................................................................................................................................................2330.331100000
.........................................TGAA---TAAATTGGGATAGGTACTTT...................................................................................................................................................................................................................................................................................................2430.331100000
....................................................................................................................................................TGCAAAACATCGATACATCATTCTC..........................................................................................................................................................................................2530.331100000
.......................................TTTGAA---TAAATTGGGATAGGTACTTTT..................................................................................................................................................................................................................................................................................................2730.331100000
.................................TGCAATTTTGAA---TAAATTGGGATAGG.........................................................................................................................................................................................................................................................................................................2630.331100000
........................................TTGAA---TAAATTGGGATAGGTACTTTC..................................................................................................................................................................................................................................................................................................2630.331000001
............................................................................TCC-----CAAAAAGAAAAA-------------------------------------AGGTTGCGATG-TT....................................................................................................................................................................................................................2830.331000010
.................................................................................................................................................TTTTGCAAAACATCGATACATCATTCA...........................................................................................................................................................................................2730.331100000
......................................TTTTGAA---TAAATTGGGATA...........................................................................................................................................................................................................................................................................................................1930.331100000
.....................................................................TATTCCTTCC-----CAAAAAGAAAAA-------------------------------------AGG...............................................................................................................................................................................................................................2530.331100000
.....................................................................................................................................................GCAAAACATCGATACATCATTCAAC.........................................................................................................................................................................................2530.331100000
.....................................................................................................................................................GCAAAACATCGATACATCATTCAACA........................................................................................................................................................................................2630.331100000
.......................................TTTGAA---TAAATTGGGATAGGTACTTT...................................................................................................................................................................................................................................................................................................2630.331100000
....................................................................................................................................................TGCAAAACATCGATACATCATTCAACAT.......................................................................................................................................................................................2830.331000010
......................................TTTTGAA---TAAATTGGGATAGGTACC.....................................................................................................................................................................................................................................................................................................2530.331000010
..............................................................................................................................................TG-TTTTGCAAAACATCGATACATC................................................................................................................................................................................................2430.331100000
........................................TTGAA---TAAATTGGGATAGGTACT.....................................................................................................................................................................................................................................................................................................2330.331100000
...........................................................................TTCC-----CAAAAAGAAAAA-------------------------------------AGGTTGCGATG-......................................................................................................................................................................................................................2730.331000010
...............................................................................................................................................................................................................................................................................................................................TGAAAAAACCTCATCGCT--ATCGCCCTG...........27140.294400000
.........................................................................................................................................................................................................................................................................................................................................TCATCGCT--ATCGCCCTGGTAC.......21150.274000040
.............................................................................................................................................................................................................ATCGGTAAAAATTGGTAA-TAAAACATC..............................................................................................................................2740.251000010
.................................TGCAATTTTGAA---TAAATTGGGATAGGC........................................................................................................................................................................................................................................................................................................2740.251100000
...............................................................................................................................................................................................................................................................................................................................TGAAAAAACCTCATCGCT--ATCGCCCT............26140.213200010
.........................................................................................................................................................................................................................................................................................................................................TCATCGCT--ATCGCCCTGGTACAGTTG..26140.213300000
...................................................................................................................................................................................................................................................................................................................................AAAACCTCATCGCT--ATCGCCCTGGTAC.......27140.213200010
................................................................................................................................................................................................................................................................................................................................GAAAAAACCTCATCGCT--ATCGCCC.............24140.213300000
.........................................................................................................................................................................................................AAACATCGGTAAAAATTGGTAA-TAAA...................................................................................................................................2650.201100000
........................................................................................................................................................................................................................TTGGTAA-TAAAACATCGATGCTCGATGCA.................................................................................................................2950.201100000
........................................................................................................................................................................................................................TTGGTAA-TAAAACATCGATGC.........................................................................................................................2150.201100000
..........................................................................................................................................................................................................AACATCGGTAAAAATTGGTAA-TAAAACA................................................................................................................................2850.201100000
.................................................................................................................................................................................................ACATCGGAAAACATCGGTAAAAATTGG...........................................................................................................................................2750.201100000
....................................................................................................................................................................................................TCGGAAAACATCGGTAAAAATTGGT..........................................................................................................................................2550.201100000
.........................................................................................................................................................................................................................TGGTAA-TAAAACATCGATGCTCGAT....................................................................................................................2550.201100000
..........................................................................................................................................................................................................AACATCGGTAAAAATTGGTAA-TATCT..................................................................................................................................2650.201100000
.........................................................................................................................................................................................................AAACATCGGTAAAAATTGGTA.........................................................................................................................................2150.201100000
..........................................................................................................................................................................................................AACATCGGTAAAAATTGGTAA-TAAAA..................................................................................................................................2650.201100000
..............................................................................................................................................................................................AA-ACATCGGAAAACATCGGTAAA.................................................................................................................................................23160.193200010
....................................................................................................................................................................................ATCAG--CGAAA-ACATCGGAAAACATC.......................................................................................................................................................2560.171000001
.....................................................................................................................................................................................TCAG--CGAAA-ACATCGGAAAACATCGG.....................................................................................................................................................2660.171010000
.................................................................................................................................................................................................................................AAAACATCGATGCTCGATGCATCG..............................................................................................................2460.171100000
...............................................................................................................................................................................................A-ACATCGGAAAACATCGGTAAAAATT.............................................................................................................................................2660.171100000
...........................................................................................................................................................................AACATCGGTATCAG--CGAAA-ACATCGGAA.............................................................................................................................................................2860.171100000
.............................................................................................................................................................................................................ATCGGTAAAAATTGGTAA-T......................................................................................................................................1960.171100000
..............................................................................................................................................................................................................................................................................................................................GTGAAAAAACCTCATCGCT--ATCGCCC.............26140.142100010
..............................................................................................................................................................................................AA-ACATCGGAAAACATCGGTAAAAATA.............................................................................................................................................2770.141100000
...................................................................................................................................................................................................................................................................................................................................AAAACCTCATCGCT--ATCGCCCTG...........23140.142200000
..............................................................................................................................................................................................................................................................................................................................................GCT--ATCGCCCTGGTACAGTTGCT23140.142200000
...................................................................................................................................................................................................................................................................................................................................AAAACCTCATCGCT--ATCGCCCTGGTA........26140.142000020
....................................................................................................................................................................................................................................................................................................................................AAACCTCATCGCT--ATCGCCC.............20140.142100010
.........................................................................................................................................................................................................................................................................................................................................TCATCGCT--ATCGCCCTGGTACAGTT...25140.142200000
.............................................................................................................................................................................................................................................................................................................................TGTGAAAAAACCTCATCGCT--ATCGCCCT............28140.142200000
...............................................................................................................................................................................................A-ACATCGGAAAACATCGGTAAAAAT..............................................................................................................................................2570.141100000
.............................................................................................................................................................................................................................................................................................................................TGTGAAAAAACCTCATCGCT--ATCGC...............25140.142200000
.........................................................................................................................................................................TCAACATCGGTATCAG--CGAAA-ACATCGG...............................................................................................................................................................2870.141100000
..........................................................................................................................................................................CAACATCGGTATCAG--CGAAA-ACATCGG...............................................................................................................................................................2770.141100000
..............................................................................................................................................................................................AA-ACATCGGAAAACATCGGTAAAAATC.............................................................................................................................................27150.132200000
........................................................................................................................................................................................G--CGAAA-ACATCGGAAAACATCGGC....................................................................................................................................................2480.131000010
.................................................................................................................................................................................................ACATCGGAAAACATCGGTAAAAA...............................................................................................................................................2380.131100000
...........................................................................................................................................................................AACATCGGTATCAG--CGAAA-ACATCGG...............................................................................................................................................................2680.131100000
..........................................................................................................................................................................CAACATCGGTATCAG--CGAAA-ACAT..................................................................................................................................................................2480.131100000
............................................................................................................................................................................ACATCGGTATCAG--CGAAA-ACATCG................................................................................................................................................................2490.111100000
.....................................................................................................................................................................................................CGGAAAACATCGGTAAAAA...............................................................................................................................................1990.111100000
..................................................................................................................................................................................................................................................................................GCTACTGGCG--------------------------------GTGTGAAA...................................18140.071100000
....................................................................................................................................................................................................................................................................................TACTGGCG--------------------------------GTGTGAAAAAACC..............................21140.071000010
.................................................................................................................................................................................................................................................................................................................................AAAAAACCTCATCGCT--ATCGCCC.............23140.071100000
..............................................................................................................................................................................................................................................................................................................................GTGAAAAAACCTCATCGCT--ATCGCCCT............27140.071100000
................................................................................................................................................................................................................................................................................................................................GAAAAAACCTCATCGCT--ATCGCCCTGG..........27140.071100000
............................................................................................................................................................................................................................................................................................................................GTGTGAAAAAACCTCATCGCT--ATCGCC..............27140.071000010
........................................................................................................................................................................................................................................................................................................................................CTCATCGCT--ATCGCCCTGGTACAG.....24140.071000010
.............................................................................................................................................................................................................................................................................................................................TGTGAAAAAACCTCATCGCT--ATCGCCA.............27140.071100000
..............................................................................................................................................................................................................................................................................................................................................GCT--ATCGCCCTGGTACAG.....18140.071000010
....................................................................................................................................................................................................................................................................................................................................AAACCTCATCGCT--ATCGCCCTG...........22140.071000010
..............................................................................................................................................................................................................................................................................................................................................GCT--ATCGCCCTGGTACAGTTG..21140.071100000
...............................................................................................................................................................................................................................................................................................................................TGAAAAAACCTCATCGCT--ATCGC...............23140.071100000
..........................................................................................................................................................................................................................................................................................................................................CATCGCT--ATCGCCCTGGTACAGTTG..25140.071100000
..................................................................................................................................................................................................................................................................................................................................AAAAACCTCATCGCT--ATCGCC..............21140.071000010
.............................................................................................................................................................................................................................................................................................................................TGTGAAAAAACCTCATCGCT--ATCG................24140.071100000
.............................................................................................................................................................................................................................................................................................................................TGTGAAAAAACCTCATCGT.......................19140.071000010
...........................................................................................................................................................................................................................................................................................................................................ATCGCT--ATCGCCCTGGTACAGTTGC.25140.071100000
...................................................................................................................................................................................................................................................................................................................................AAAACCTCATCGCT--ATCGC...............19140.071100000
.........................................................................................................................................................................................................................................................................................................................................TCATCGCT--ATCGCCCTGGTACAGT....24140.071100000
............................................................................................................................................................................................................................................................................................................................GTGTGAAAAAACCTCATCGCT--ATCGCCCC............29140.071100000
.................................................................................................................................................................................................................................................................................................................................AAAAAACCTCATCGCT--ATCGCCCT............24140.071000010
...........................................................................................................................................................................................................................................................................................................................................ATCGCT--ATCGCCCTGGTACAGT....22140.071000010
...................................................................................................................................................................................................................................................................................................................................AAAACCTCATCGCT--ATCGCCCT............22140.071100000
.....................................................................................................................................................................................................................................................................................................................................AACCTCATCGCT--ATCGCCC.............19140.071000010
..............................................................................................................................................................................................................................................................................................................................GTGAAAAAACCTCATCGCT--ATCGCC..............25140.071100000
..............................................................................................................................................................................................................................................................................CC-AGCTACTGGCG--------------------------------GTGTG......................................18140.071100000
.............................................................................................................................................................................................................................................................................................................................TGTGAAAAAACCTCATCGCT--AT..................22140.071100000
.......................................................................................................................................................................................................................................................................................................................................CCTCATCGCT--ATCGCCCTGGTACAG.....25140.071000010
...................................................................................................................................................................................................................................................................................................................................AAAACCTCATCGCT--ATCGCCC.............21140.071000010
...............................................................................................................................................................................................................................................................................................................................................CT--ATCGCCCTGGTACAGTTGC.21140.071000010
.........................................................................................................................................................................................................................................................................................................................................TCATCGCT--ATCGCCCTGGTACAGTTGC.27140.071000010
......................................................................................................................................................................................................................................................................................................................................ACCTCATCGCT--ATCGCCCTGGTACAG.....26140.071100000
...............................................................................................................................................................................................................................................................................................................................TGAAAAAACCTCATCGCT--A...................19140.071100000
........................................................................................................................................................................................................................................................................................................................................CTCATCGCT--ATCGCCCTGGTACAGT....25140.071100000
...................................................................................................................................................................................................................................................................................................................................AAAACCTCATCGCT--ATCGCCCTGGT.........25140.071100000
...............................................................................................................................................................................................................................................................................................................................TGAAAAAACCTCATCGCT--ATC.................21140.071100000
.............................................................................................................................................................................................................................................................................................................................TGTGAAAAAACCTCATCGCT--ATCGCCCA............28140.071100000
..........................................................................................................................................................................................................................................................................................................................................CATCGCT--ATCGCCCTGGT.........18150.071000010
........................................................................................................................................................................................................................................................................................................................................CTCATCGCT--ATCGCCCTGGT.........20150.071000001
...............................................................................................................................................................................................A-ACATCGGAAAACATCGGT....................................................................................................................................................19170.061100000
..............................................................................................................................................................................................AA-ACATCGGAAAACATCGGTA...................................................................................................................................................21170.061100000
..............................................................................................................................................................................................AA-ACATCGGAAAACATCGGTAA..................................................................................................................................................22170.061100000
..............................................................................................................................................................................................AA-ACATCGGAAAACATCGG.....................................................................................................................................................19200.051100000
droVir3
TCGG---------------------CA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CC-ATCCACGGGCG--------------------------------GTGTAAAGAAGCCTCATCGCT--ATCGCCCTGGCACGGTGGCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................................................................................................................................................................................................................................................................................GTAAAGAAGCCTCATCGCT--ATC.................2212.002000100000000010000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................GAAGCCTCATCGCT--ATCGCCC.............2111.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................CATCGCT--ATCGCCCTGGCAC.......2011.001001000000000000000000000000000000000000000000000000000000000000
..GG---------------------CA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CC-ATCCACGGGCG--------------------------------GT.........................................1911.001000000000000000000000100000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................ATCGCCCTGGCACGGTGGC.1911.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................AAGCCTCATCGCT--ATCGCCCTGGCACGGT....2911.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................T--ATCGCCCTGGCACGGTGGCA2111.001000000000000000000000000000000000000100000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................TGTAAAGAAGCCTCATCGCT--ATC.................2311.001000000000000010000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................TCATCGCT--ATCGCCCTGGCACG......2211.001000000000000000000000000000000000000001000000000000000000000000
droGri2
CCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACCGGTG--------------------------------GTGTGAAGAAACCTCATCGCT--ATCGTCCCGGTACAGTTGCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
AAAG---------------------TTTTTAAGAGCTTTTTAA--AGACAGCTTCATATAACTATATGATAGAACTTGATAAGCGAAAA---AT----------------------------------------AAGATCAATGTTTTAGTAAAACATTGATACATCGCTGAACATCGACATCAA--CAAAA-ACATCAGTAAACATCGAAAAACATCGCCAA-GAGAACATCGATGTTCGATGCATCGATGTTTTTTTTTACATCATT------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................................................................................................................................................................................................................AAACATCGCCAA-GAGAACATCGAT...........................................................................................................................24100.10100100
...................................................................................................................................................................................................................AAACATCGCCAA-GAGAACATC..............................................................................................................................21120.08110000
dp5
ATTG---------------------TATTTATGAGTATTTGTGTA---TGA-----GAT-TGTACTGTATATTCTGTTA-----TATTA---ATAA-------------------------------------GGTATACGATG-TTTTGCAAAACATCGATACATCGCTCAACATCGGTACCAG--CAAAA-ACACCGGAAAACATC----------GGCAA-AAAAACATCGATGCTCGATGCATCGATGTGTT--TTTACATCACTAAAC-GGAACTGTTC---------------------TTGTGTAAAAAA--------------------------------------CACASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................GTA---TGA-----GAT-TGTACTGTATATTCTGT..........................................................................................................................................................................................................................................................................................2622.0040000000040
...........................................................................................................................................................................................................................................................................CTAAAC-GGAACTGTTC---------------------TTGTGTAAA.............................................2511.0010000100000
.............................TATGAGTATTTGTGTA---TGA-----GAT-TGTAC......................................................................................................................................................................................................................................................................................................2741.0040000000040
.........................TATTTATGAGTATTTGTGTA---TGA-----GAT-...........................................................................................................................................................................................................................................................................................................26170.4780310001300
.............................TATGAGTATTTGTGTA---TGA-----GAT-TG.........................................................................................................................................................................................................................................................................................................24170.1220200000000
...............................TGAGTATTTGTGTA---TGA-----GAT-T..........................................................................................................................................................................................................................................................................................................21180.1120200000000
...........................TTTATGAGTATTTGTGTA---TGA-----GAT-T..........................................................................................................................................................................................................................................................................................................25170.0610100000000
.........................TATTTATGAGTATTTGTGTA---TGA-----GAT-T..........................................................................................................................................................................................................................................................................................................27170.0610100000000
..........................ATTTATGAGTATTTGTGTA---TGA-----GAT-TG.........................................................................................................................................................................................................................................................................................................27170.0610100000000
............................TTATGAGTATTTGTGTA---TGA-----GAT-T..........................................................................................................................................................................................................................................................................................................24170.0610100000000
................................GAGTATTTGTGTA---TGA-----GAT-T..........................................................................................................................................................................................................................................................................................................20180.0610100000000
.............................TATGAGTATTTGTGTA---TGA-----GA.............................................................................................................................................................................................................................................................................................................21190.0510000100000
droPer2
CAAAAAT---------------------TGCATTGCAATTTTGTA---TAAATTAGGATAGGTACTTTTTATACCGTCC-----CAAAAACACGAA----------------------------------------------GGATTTTGCAAAACATCGATACATCACTCAACATCGGTAGCAG--CAAAA-ACATCGGAAAACATCAGTAAACATCGGAAG-AAAAACATCGATGCTCGATGCATCGATGTGT---TTTACATCACTACC---------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................................................................................................................................................................................................AAAACATCGATGCTCGATGCATC...............................................................................................................23140.071000001
...................................................................................................................................................................CATCACTCAACATCGGTAGC................................................................................................................................................................................20150.071000001
droAna3
C-------------------------------------------------------------------------------------------------------------------------------------------GATG-TTTCATTAAACATCGATATATCGGTTAACATCGATATCAA--CAAAT-ACCTCGGAAAACATC----------CCAAAAACAAACATCGATACTCCAAGCATCGATTTTT---TCAGCATCACTACT------------------------------------------------------------------------------------AGCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
C-------------------------------------------------------------------------------------------------------------------------------------------GATG-TTTCGAGAAACATCGATGCATCGGCTAACATCGGTATAAA--AAAAA-ACATCGAAAAACCTCGGAAAAAATCGCTAAGAAAAACATCGATGTTCGATGCATCGATGTTT---TCAGCATCATTAC----------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
AACAAATCTTTTATAGCAGTCGTTCAATTTGTAAGTAGTTATC-----------------------------------------CATAGGCACAAAAAATTAAAAATAAATAAATAATAAATATTGTGGAATCAGAGACCGATG-TTTTGTCAAACATCGATGCATCGGTTAACATCGACATCAA--CAAAA-ACATCGAAAATCATCGGAAAACATCGCTAA-AAAAACATCGATGCTCGATGCATCGATGTTT---TTAGCATCACTATT-----GGCAACG--------------------------------TTAAATGAAAA----------------CCCTGGTACAGT----SizeHit CountTotal NormTotal
No Reads
droFic1
C-----------------------------------------------------------------------------------------------------------------------------------------------------------ATCGATATAACACTCAACATCGATATTAT--CAAGA-ACATCGACAAACTTC----------TTTAA-AAAGATATCGATGTTCGATGAATCGGTATTT---GTACCATCACTAC----------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TC-------------------------------------------------------------------------------------------------------------------------------------------GTA-AATCG-------------------------GCG--------------------------------------------------------------------------------------------CC-ATCCACTGGCG--------------------------------GAGTGAAGAAGCCCCATCGTT--ATCGTCCCGGTACCGTGGCTSizeHit CountTotal NormTotal
No Reads
droRho1
CCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCACCGGAG--------------------------------GCGTGAAGAAGCCCCATCGCT--ATCGCCCCGGAACTGTGGCCSizeHit CountTotal NormTotal
No Reads
droBia1
AAATA------------------------AAAACGATTT------AA----------------------------------------------------------------------------------------CCGCCGATT-TTTGGCAACACATCGATGGACCGCCCAATATCGATATCAT------------TGGCGGCTATC----------GG--A-TAAAACATCGATGGCCGATGCATCGATGTTTC--TTGACACCACTA-----------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
A--------------------------------------------------------------------------------------------------------------------------------------------------------AACATCGATGCATCGATAAACATCGGCATAAC--ATAAA-ACATCGAAAAACATCGGAAAACATCGGCCA-AAAAACATCGATGCTCGATGCATCGATGTTTT--TTTACATCACTA-----------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
C-------------------------------------------------------------------------------------------------------------------------------------------GATG-TTTCGAGAAACATCGATGCATCGGTTAACATCGGTATAAA--CAAAA-CCATCGAAAAACATC----------GCTAAGAAAAACATCGATGTTCGAAGCATCGATGTTT---TCAGCATCACTAAC----------------------------------------------------------------------------------TAGCTSizeHit CountTotal NormTotal
No Reads
dm3
AAGAAAT---------------------GTAAAGGTTTT------AGACACC-AATAATAAGTAACATTTACATTTTT--AAGTCAAAAATATTTA-------------------------------------AGAATCCGATG-TTTTGATAAGCGACGATGTATCGCTGGTCGGCGATACTATTTCTAAA-ATATCGGCTAGC-TCGAT-AGCACCTATAT-GAAAACATCGATTCCCGATGCATCGATGTTTC--TCCCCATCACTATC--------------------------------------------------------------------------------------ASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................................................................................................................................................................................................................ATGCATCGATGTTTC--TCCC.................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
droSim2
CAGT---------------------TTTC----------------------------------------------------------------------------------------------------------------------TGTGAAACGACCGATGTGT-----GACATCGATATCAA--GCAAA-ACATCGAAACACAGA----------GC-CC-CAAAACATCGCTGCTGGATGCATCGATGTTAT--TTTACATCACTAGGC-G---AGCGAGCCAGCAATAAGCGAACGATTTTTGCGCAAAAAC-------GGTCTTTATCAATAAATCGCTG-CGCACGATCGCTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................................................................................................................................................................C-------GGTCTTTATCAATAAATCG................2011.00100000100000000000
.......................................................................................................................................................................................................................................................................................................................AAAAAC-------GGTCTTTATCAATA.....................2011.00100010000000000000
............................................................................................................................................................................................................................................................................................................................C-------GGTCTTTATCAATAAATCGCTG-............2311.00110000000000000000
..................................................................................................................................................................................................................................................................................G---AGCGAGCCAGCAAT...................................................................1520.50100000000001000000
droSec2
G-----------------------------------------------------------------------------------------------------------------------------------------------------CAAAACATCGATACGTTTCCAAGCATCGATATCAA--CAAGAAATATCGAAAGTTACT----------GG-CA-CGGGACATCGATTCTCGATGCATCGATGTATT--CTTACATCCCTAGCC---TGACTGAG--------------------------------GTGCGTAGAGTTTCCAGTAAT--ATCG----------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................................................................................................................................................................................................................................ATT--CTTACATCCCTAGCC---T..................................................................................1911.0010010
........................................................................................................................................................................................................................................................................TCCCTAGCC---TGACTGAG--------------------------------GTGC.......................................2111.0011000
...........................................................................................................................................................................................................................................................................CTAGCC---TGACTGAG--------------------------------GTGCGT.....................................2011.0010010
..............................................................................................................................................................................................................................................................................GCC---TGACTGAG--------------------------------GTGCGTAGAGTTTCCA...........................2711.0010001
............................................................................................................................................................................................................................................................................................................................GTGCGTAGAGTTTCCAGTAAT--A...................2211.0010001
droYak3
C-------------------------------------------------------------------------------------------------------------------------------------------GATG-TTTTTAAAATCTACGATGTATCGTTGGTCAGCGATATTA---CAGAA-ATAACGGCCAACATCGAT-AGCAGCTTT---CAGAACATCGATTCTCGATGCATCGATGTGCC--TTCACATCACTA-----------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
C-------------------------------------------------------------------------------------------------------------------------------------------GATG-TTTTGAAAATCAACGATGTATCGCTGGTCGGCGATATTA---CAGAA-ATATCGGCTAACATCGAT-AACATCTTT---GAAAACATCGATTCTCGATGCATCGATGTTTT--TTCACATCACTATC--------------------------------------------------------------------------------------ASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/18/2015 at 12:48 AM