ID:

dmo_1574

 Coordinate:

scaffold_6500:16196906-16197056 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-26.6 -26.5 -26.5

Flybase annnotation

exon [dmoj_GLEANR_2455:5]; CDS [Dmoj\GI17657-cds]; intron [Dmoj\GI17657-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CGCTAAGGGCGCCAGAGAGCTGTTGCTGGATGGTTGGGATGGTCCCTTCCCAATAACAATTTTAGTTGAATTTTCGATTAATTCCACAATTAACATTATTTGTTCCAATGTGGCTCGCATTGTTGAGCCAAAATAAATCTTAGTGCTACAATGGACTCCACAATTCATAGCCAATGGCTTTTCATTTGATGTACCTTGCAGTGCCGCCTGATTGTGTCGCAGATGTCGGTGACGCGGTGCGAGGCCTGGCA
**************************************************...........((((((((....)))))))).....(((...((((((..((..(((...(((((...(((((.((((((.....................))).))).)))))....))))).))).....))..))))))...)))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V110
male body		 M060
embryo
 V056
head
..............................................................................................................................................GTGCTACAATGGACGGTACA......................................................................................... 20 3 1 20.00 20 19 1 0 0
..............................................................................................................................................GTGCTACAATGGACGGTAC.......................................................................................... 19 3 10 3.00 30 30 0 0 0
..............................................................................................................................................GTGCTACAATGGACGGTACAA........................................................................................ 21 3 1 2.00 2 2 0 0 0
................................................................................................................................................GCTACAATGGACGGTACAA........................................................................................ 19 3 13 1.31 17 14 3 0 0
............................................................................................................................................................TCCACAATTCATAGCCAATGG.......................................................................... 21 0 1 1.00 1 0 0 1 0
...............................................................................................................................................TGCTACAATGGACGGTACAA........................................................................................ 20 3 3 0.67 2 2 0 0 0
...............................................................................................................................................TGCTACAATGGACGGTACA......................................................................................... 19 3 13 0.54 7 7 0 0 0
..............................................................................................................................................GTGCTACAATGGACGGCA........................................................................................... 18 2 4 0.25 1 1 0 0 0
...............................................................................................................................................TGCTACAATGGACGGTAC.......................................................................................... 18 3 20 0.20 4 4 0 0 0
...................................................................................................................................................................................................TTGTAGTGCCGCCTGATCC..................................... 19 3 20 0.10 2 0 0 2 0
................................GTTGGGATCGTCACTACC......................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 1
.GCTAAGGGCGCTAGTGCG........................................................................................................................................................................................................................................ 18 3 20 0.05 1 1 0 0 0

Anti-sense strand reads

GCGATTCCCGCGGTCTCTCGACAACGACCTACCAACCCTACCAGGGAAGGGTTATTGTTAAAATCAACTTAAAAGCTAATTAAGGTGTTAATTGTAATAAACAAGGTTACACCGAGCGTAACAACTCGGTTTTATTTAGAATCACGATGTTACCTGAGGTGTTAAGTATCGGTTACCGAAAAGTAAACTACATGGAACGTCACGGCGGACTAACACAGCGTCTACAGCCACTGCGCCACGCTCCGGACCGT
**************************************************...........((((((((....)))))))).....(((...((((((..((..(((...(((((...(((((.((((((.....................))).))).)))))....))))).))).....))..))))))...)))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6500:16196856-16197106 + dmo_1574 ---CGCTAA-GGGCGC-CAGAGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTTGCTGGATGGTTGGGA-------------TGGTCCCTTCCCAATAACAATTTTAGTTGAATTTTCGAT--------------TA-AT----T----CCACAATTAACATT----------------------------------------ATTT------------------GTT-----CCAATGTG---------GCTCGCATTGTTGAGCCAAAATAAATCTTAGTGCTACAATGG-AC-TCCACAATTCATAGCCAATGG---------------------CTTT---------TCATTTG--A-----T-GTACCTTGCAGTGCCGCCTGATTGTGTCGCAGATGTCGGTGACGCGGTGCGAGGCCTGGCA
droVir3 scaffold_12723:2925986-2926061 + ---ATAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTCCATTATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATCTTACAGTGCCGTCTGATTGTGTCCCAAATGTCTGTGACACGCGCCGAGGCCTGGCA
droGri2 scaffold_15126:553797-553853 - ---C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGTGCCGATTGATCGTCTCCCAAATGTCGGTGACACGTTGCGAGGCCTGGCA
droWil2 scf2_1100000004585:3259392-3259698 - ---CACCGATCGCA-TGCA--GAAT-GGTGGATTGTCGCGTTAGGCAGAAGTCTCCACCCAGTAGGCCCATAG------TAAATTTATGTTGATCGCAATTCATTTTAATTTGAAAGCAAGCTAAAATTTTCAACAAAATTATGGAACAACAAATGGAAATAAAACAAACAACAATCTACTATAAAGCGTTACCTTTCTCCCA-----------------ATTGAAAATTAC--------ACAAAT--------------------------------------------------------------------AA---GGCAACAGAAAAATA------------------------------------------------------------------------------------------------------------------------------------------------------TTTTAATTAATTTATTAACC-----T-CCCTTTTGCAGTGTCGTTTAATTGTTGCCCAAATGTCTGTTACCCGATGCGAGGCCTGGCA
dp5 4_group1:1665954-1666165 - ---TTTAAC-AATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGATAATGCCTAACCCTTGCAAGAAACTCGACAAAAAAACACGAAAAAATTCC--------ACAAATTTAAGTCTGTTTGAAGAAT---------------------------------------------------------------------------------------------------AATTATAATAATTAGATGTGA------------------------------------------------------TCCAGGCC--------------------------------AAAACATTTGCTTATTGTTTTTCACACTCTCTCTTAATTATAGTGCCGCTTGATTGTCTCGCAAATGTCGGTGACGCGCTGCGAGGCCTGGCA
droPer2 scaffold_5:3540257-3540468 + ---TTTAAC-AATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGATAATGCCTAACCCTTGCAAGAAACTCGACAAAAAAACACGAAATAATTCC--------ACAAATTTAAGTCTGTTTGAAGAAT---------------------------------------------------------------------------------------------------AATTATAATAATTAGATGTGA------------------------------------------------------TCCAGGCC--------------------------------AAAACATTTGCTTATTGTTTTTCACACTCTCTCTTAATTATAGTGCCGCTTGATTGTCTCGCAAATGTCGGTGACGCGCTGCGAGGCCTGGCA
droAna3 scaffold_12916:12042487-12042542 - ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGTGCCGGCTGATTGTGTCCCAAATGTCCGTGACGAGATGTGATGCCTGGCA
droBip1 scf7180000396769:390190-390245 - ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGTGCCGCCTGATTGTGTCCCAAATGTCGGTGACGAGATGCGATGCCTGGCA
droKik1 scf7180000302382:785436-785491 - ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGTGCCGCCTGATTGTTTCCCAGATGTCGGTGACGAGGAGCGAGGCCTGGCA
droFic1 scf7180000454003:49295-49495 - ---CAAAAG-CGCT------AGGCG--------------------------------------------------------AAGA--------------------------------------------------------------------------------------------C-------------------------------------------GTTATGATTCCAACGTGTTACAAATTTAAGTCAGCTTTTCTTAAATATAGTTTCGATTA-AC------------------------------------AGCT-----------ACGATGAATTTTTTTT---------------------------------GT-TTTGGATATGAAT---------------------------ACCTATTAA----------------------------------------------CATA---------TTGTTTGAAA-----T-CTTTTTTGCAGTGCCGACTGATTGTTTCCCAGATGTCCGTGACAAGATGCGAGGCATGGCA
droEle1 scf7180000491046:3428278-3428496 - ---CTCAAA-CGCT------AGACCA--------------------------------------------TTTTGCAGTTCAATT--------------------------------------------------------------------------------------------C-------------------------------------------TTTAAGATTCCAAGTTATTACAAATTTAAGTCAGTTTAGATCAAATATAATTCCA-----AC-----------------------AGCAAAAAATAGATGGC-----------TTT----------------------------------------AAATGGGT------------------------------------------------------TTAAGAACGAATGACCGA---------------------------TTTTAATTATTTATTTTAAATT---T-ATATATTTCAGTGCCGACTGATTGTCTCCCAAATGTCCGTGACGAGATGCGAAGCGTGGCA
droRho1 scf7180000779863:9651-9884 + ---AACTTA-AACCAA-CTTAGACCA--------------------------------------------TTTTGCAGTTCAACC--------------------------------------------------------------------------------------------C-------------------------------------------TTTAAGATTCCAACGTGTTACAAATTTAAGTCAGCTTCCATTAAATATAATTTCGATTCGAT-----------------------AACAAAA-AT---AGTTACATAAAAATATTT----------------------------------------AAATGGGT------------------------------------------------------TTTAAAATTAATGACCCA---------------------------CTTTTATTAATACTTTAAAA-----T-TTCTATTGCAGTGCCGGCTGATTGTCTCCCAAATGTCCGTGACGAGATGCGAGGCGTGGCA
droBia1 scf7180000302408:451316-451533 + ---CTTAAA-CGCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------C-------------------------------------------TTGAAAATTCCATTGTGTTTCAAATTTTAGTCAGCTTACAGAAAATATAGTTACCATTCGAC-----------------------AGGAAGCATTAAGTGCC-----------TCTAGATAGTCTTTAT---------------------------------AA-TTTTGAGATTAAC------------------------------------------------------------TTTTAATTAGTA--TTAATTTATGTA---------TGCTTTTAAAT----C-TATCATTGCAGTGTCGTTTGATTGTCTCCCAAATGTCTGTGACGAGATGTGAGGCGTGGCA
droTak1 scf7180000415115:982379-982438 - ---T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTACAGTGTCGTTTGATTGTCTCCCAAATGTCCGTGACGAGATGCGAGGCGTGGCA
droEug1 scf7180000409463:1848405-1848645 + ---CTCAAA-CGCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------C-------------------------------------------TTAAAGATTTAGCCGTGTTTAAAATTTTAGTTTGTTAACAG-AAATATAATTCCGATTCGACAGATTGAAG--------------------CA-----TGCC-----------TTTAATGAGTTTTTCTATGGCTTTAAAAATG--TGTAAAAAGTTGTTGT-----TTGA-ACCGAC------------------------------------------------------------CTCC-ATTAGCAAATCTAGTAATATA---------TTTGTTTAAT-----T-TTTTATTGCAGTGCCGTTTGATTGTCTCTCAAATGTCCGTGACGAGATGTGAGGCGTTTCA
dm3 chr2L:19535983-19536182 + ---CTCAAA-CGCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------C-------------------------------------------TTAAAGTTTCCATCTTGTTGCAAAGTTTAGTGCACTTACAGTT---------TAGATTCAGAAAATT----------------TT----------------------------TTT-----------------------------------------------TTTTGAAATATGAACATTGTTCTGACGAAATTAAA--TAGTGACCAAATGACACT---------------------------------------------C---------CTCCTTGCTT-----C-TTTTATTGCAGTGTCGTTTAATTGTCTCCCAGATGTCCGTGACGAGATGCGAGGCCTGGCA
droSim2 2l:19069911-19070107 + ---CTCAAA-CGCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------C-------------------------------------------TTAAAGTTTCCATCGTGTTGCAAAGTTTAGTGCGTTTACAGTATAG---------ATTCAGAAAATT----------------TT-----------------------------------------------------------------------------GTTTTTGAATATGAACACTGTTCTGACGAAATTAAA---AGTGACCAAATGACACT---------------------------------------------A---------CTCCTTGCTT-----C-TTTTATTGCAGTGTCGTTTGATTGTCTCACAGATGTCCGTGACGAGATGCGAGGCCTGGCA
droSec2 scaffold_7:3150680-3150876 + ---CTCAAA-CGCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------C-------------------------------------------TTAAAGTTTCCATCGCGTTGAAAAGTTTATTGCGTTTACAGTATAG---------ATTCAGAAAATT----------------TT-----------------------------------------------------------------------------GTTTTTGAATATGAACACTGTTCTGACGAAATTAAA---AGTGACCAAATGACACT---------------------------------------------A---------CTCCTTGCTT-----C-TCTTATTGCAGTGTCGTTTGATTGTCTCACAGATGTCCGTGACGAGATGCGAGGCCTGGCA
droYak3 2R:6032666-6032874 + ---CT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-------------------------------------------TTAAAGTTCCCATCGTGTTGCAGGGTTTAATGCGTTTACTGTAAAGAT----TGAATTCAGCAAATTGAAA---------------------------TTAT-----------TTT----------------------------------------AGATGGGTTTTCAAGTATTAACATTTTTCTGACGAAATTAAA--CAGTGACCAAATGACA-T---------------------------------------------A---------CTACTTGTAT-----C-TCTTGTTTCAGTGTCGTTTGATTGTCTCCCAGATGTCCGTGACAAGATGTGAGGCGTGGCA
droEre2 scaffold_4845:4762944-4763164 - AAACTTAAA-CGCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------C-------------------------------------------TTGAAGTTCCCTTCGTGTTGCAAAGTTTAGTGCGCTTACAGTAAAGAT----TGGATTCAGCAAATTTAAG---------------------------AGAT-----------TTT----------------------------------------AGCTGGGTTTTCAAATATTAACATTTTTCTGACGAAATTAAA--TGGTGACCAAATGACATA---------------------------------------------C---------TTCTACGTAT-----C-TCTTATTTCAGTGTCGTTTGATTGTCTCCCAGATGTCCGTGACAAGATGTGAGGCGTGGCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
---CGCTAA-GGGCGC-CAGAGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTTGCTGGATGGTTGGGA-------------TGGTCCCTTCCCAATAACAATTTTAGTTGAATTTTCGAT--------------TA-AT----T----CCACAATTAACATT----------------------------------------ATTT------------------GTT-----CCAATGTG---------GCTCGCATTGTTGAGCCAAAATAAATCTTAGTGCTACAATGG-AC-TCCACAATTCATAGCCAATGG---------------------CTTT---------TCATTTG--A-----T-GTACCTTGCAGTGCCGCCTGATTGTGTCGCAGATGTCGGTGACGCGGTGCGAGGCCTGGCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCACAATTCATAGCCAATGG---------------------...........................................................................................2111.001000010
droVir3
---ATAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTCCATTATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATCTTACAGTGCCGTCTGATTGTGTCCCAAATGTCTGTGACACGCGCCGAGGCCTGGCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGTGTCCCAAATGTCTGT.....................2111.001000000000000000000000000000000001000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTCTGTGACACGCGCCGA.........2111.001001000000000000000000000000000000000000000000000000000000000000
droGri2
---C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGTGCCGATTGATCGTCTCCCAAATGTCGGTGACACGTTGCGAGGCCTGGCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
---CACCGATCGCA-TGCA--GAAT-GGTGGATTGTCGCGTTAGGCAGAAGTCTCCACCCAGTAGGCCCATAG------TAAATTTATGTTGATCGCAATTCATTTTAATTTGAAAGCAAGCTAAAATTTTCAACAAAATTATGGAACAACAAATGGAAATAAAACAAACAACAATCTACTATAAAGCGTTACCTTTCTCCCA-----------------ATTGAAAATTAC--------ACAAAT--------------------------------------------------------------------AA---GGCAACAGAAAAATA------------------------------------------------------------------------------------------------------------------------------------------------------TTTTAATTAATTTATTAACC-----T-CCCTTTTGCAGTGTCGTTTAATTGTTGCCCAAATGTCTGTTACCCGATGCGAGGCCTGGCASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTTACCCGATGCGAGGCCT....2111.00100010
dp5
---TTTAAC-AATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGATAATGCCTAACCCTTGCAAGAAACTCGACAAAAAAACACGAAAAAATTCC--------ACAAATTTAAGTCTGTTTGAAGAAT---------------------------------------------------------------------------------------------------AATTATAATAATTAGATGTGA------------------------------------------------------TCCAGGCC--------------------------------AAAACATTTGCTTATTGTTTTTCACACTCTCTCTTAATTATAGTGCCGCTTGATTGTCTCGCAAATGTCGGTGACGCGCTGCGAGGCCTGGCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTCGGTGACGCGCTGCGA.........2112.0020200000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTCGGTGACGCGCTGCGA.........2211.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGCGCTGCGAGGCCTGGCA2111.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTATTGTTTTTCACACTC................................................................2111.0010100000000
.............................................................................................................................................................................................TAACCCTTGCAAGAAACTCGA..........................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................TAATTAGATGTGA------------------------------------------------------TCCAGGCC--------------------------------T............................................................................................2211.0010100000000
......AAC-AATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGATAATGCCTAACCCTTG......................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGCC--------------------------------AAAACATTTGCTT................................................................................1911.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGCAAATGTCGGTGACGCGCTG............2411.0010100000000
.................................................................................................................................................................................................................................................CAAATTTAAGTCTGTTTGA........................................................................................................................................................................................................................................................................................................................1911.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGTGCCGCTTGATTGTCT..................................2111.0010100000000
droPer2
---TTTAAC-AATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGATAATGCCTAACCCTTGCAAGAAACTCGACAAAAAAACACGAAATAATTCC--------ACAAATTTAAGTCTGTTTGAAGAAT---------------------------------------------------------------------------------------------------AATTATAATAATTAGATGTGA------------------------------------------------------TCCAGGCC--------------------------------AAAACATTTGCTTATTGTTTTTCACACTCTCTCTTAATTATAGTGCCGCTTGATTGTCTCGCAAATGTCGGTGACGCGCTGCGAGGCCTGGCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATGTCGGTGACGCGCTGCGAGGCCC....2811.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTGTTTTTCACACTCTCT.............................................................2111.001010000
.................................................................................................................................................................................................................................................................................................................................................................................TAATAATTAGATGTGA------------------------------------------------------TCCAGGCC--------------------------------.............................................................................................2411.001100000
droAna3
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGTGCCGGCTGATTGTGTCCCAAATGTCCGTGACGAGATGTGATGCCTGGCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGACGAGATGTGATGCC.....1912.002000002
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGTGTCCCAAATGTCCGT.....................2111.001000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGTGACGAGATGTGATGC......2111.001001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCCGTGACGAGATGTGATGCCT....2511.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGGCTGATTGTGTCCCAAA............................2211.001000001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGTGTCCCAAATGTCCGTGA...................2311.001000010
droBip1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGTGCCGCCTGATTGTGTCCCAAATGTCGGTGACGAGATGCGATGCCTGGCASizeHit CountTotal NormTotal
No Reads
droKik1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGTGCCGCCTGATTGTTTCCCAGATGTCGGTGACGAGGAGCGAGGCCTGGCASizeHit CountTotal NormTotal
No Reads
droFic1
---CAAAAG-CGCT------AGGCG--------------------------------------------------------AAGA--------------------------------------------------------------------------------------------C-------------------------------------------GTTATGATTCCAACGTGTTACAAATTTAAGTCAGCTTTTCTTAAATATAGTTTCGATTA-AC------------------------------------AGCT-----------ACGATGAATTTTTTTT---------------------------------GT-TTTGGATATGAAT---------------------------ACCTATTAA----------------------------------------------CATA---------TTGTTTGAAA-----T-CTTTTTTGCAGTGCCGACTGATTGTTTCCCAGATGTCCGTGACAAGATGCGAGGCATGGCASizeHit CountTotal NormTotal
No Reads
droEle1
---CTCAAA-CGCT------AGACCA--------------------------------------------TTTTGCAGTTCAATT--------------------------------------------------------------------------------------------C-------------------------------------------TTTAAGATTCCAAGTTATTACAAATTTAAGTCAGTTTAGATCAAATATAATTCCA-----AC-----------------------AGCAAAAAATAGATGGC-----------TTT----------------------------------------AAATGGGT------------------------------------------------------TTAAGAACGAATGACCGA---------------------------TTTTAATTATTTATTTTAAATT---T-ATATATTTCAGTGCCGACTGATTGTCTCCCAAATGTCCGTGACGAGATGCGAAGCGTGGCASizeHit CountTotal NormTotal
No Reads
droRho1
---AACTTA-AACCAA-CTTAGACCA--------------------------------------------TTTTGCAGTTCAACC--------------------------------------------------------------------------------------------C-------------------------------------------TTTAAGATTCCAACGTGTTACAAATTTAAGTCAGCTTCCATTAAATATAATTTCGATTCGAT-----------------------AACAAAA-AT---AGTTACATAAAAATATTT----------------------------------------AAATGGGT------------------------------------------------------TTTAAAATTAATGACCCA---------------------------CTTTTATTAATACTTTAAAA-----T-TTCTATTGCAGTGCCGGCTGATTGTCTCCCAAATGTCCGTGACGAGATGCGAGGCGTGGCASizeHit CountTotal NormTotal
No Reads
droBia1
---CTTAAA-CGCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------C-------------------------------------------TTGAAAATTCCATTGTGTTTCAAATTTTAGTCAGCTTACAGAAAATATAGTTACCATTCGAC-----------------------AGGAAGCATTAAGTGCC-----------TCTAGATAGTCTTTAT---------------------------------AA-TTTTGAGATTAAC------------------------------------------------------------TTTTAATTAGTA--TTAATTTATGTA---------TGCTTTTAAAT----C-TATCATTGCAGTGTCGTTTGATTGTCTCCCAAATGTCTGTGACGAGATGTGAGGCGTGGCASizeHit CountTotal NormTotal
No Reads
droTak1
---T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTACAGTGTCGTTTGATTGTCTCCCAAATGTCCGTGACGAGATGCGAGGCGTGGCASizeHit CountTotal NormTotal
No Reads
droEug1
---CTCAAA-CGCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------C-------------------------------------------TTAAAGATTTAGCCGTGTTTAAAATTTTAGTTTGTTAACAG-AAATATAATTCCGATTCGACAGATTGAAG--------------------CA-----TGCC-----------TTTAATGAGTTTTTCTATGGCTTTAAAAATG--TGTAAAAAGTTGTTGT-----TTGA-ACCGAC------------------------------------------------------------CTCC-ATTAGCAAATCTAGTAATATA---------TTTGTTTAAT-----T-TTTTATTGCAGTGCCGTTTGATTGTCTCTCAAATGTCCGTGACGAGATGTGAGGCGTTTCASizeHit CountTotal NormTotal
No Reads
dm3
---CTCAAA-CGCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------C-------------------------------------------TTAAAGTTTCCATCTTGTTGCAAAGTTTAGTGCACTTACAGTT---------TAGATTCAGAAAATT----------------TT----------------------------TTT-----------------------------------------------TTTTGAAATATGAACATTGTTCTGACGAAATTAAA--TAGTGACCAAATGACACT---------------------------------------------C---------CTCCTTGCTT-----C-TTTTATTGCAGTGTCGTTTAATTGTCTCCCAGATGTCCGTGACGAGATGCGAGGCCTGGCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCAGATGTCCGTGACGAGATGCGAG........2715.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000010000000000010000000000000100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCCCAGATGTCCGTGACGAGATGC...........2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000100000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTCCGTGACGAGATGCGAGGCC.....2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCAGATGTCCGTGACGAGATGCGAGG.......2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000100000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCAGATGTCCGTGACGAGATGC...........2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATTGCAGTGTCGTTTAATTGTCT..................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGCAGTGTCGTTTAATTGTCT..................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCCAGATGTCCGTGACGAGATGCGA.........2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCCAGATGTCCGTGACGAGATGC...........2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGCAGTGTCGTTTAATTGTCTCCCA..............................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGTGTCGTTTAATTGTCTCCCA..............................2512.0020000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCAGATGTCCGTGACGAGATGCGA.........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................A--TAGTGACCAAATGACACT---------------------------------------------C---------CTCCTTGC......................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTGCTT-----C-TTTTATTGCAGTGTCGTT...........................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................CACT---------------------------------------------C---------CTCCTTGCTT-----C-TTTTATTG.....................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGTGACGAGATGCGAGGCCTG...2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGTGACGAGATGCGAGGCCTGG..2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGCAGTGTCGTTTAATTGTC...................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGTCCGTGACGAGAT.............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCCAGATGTCCGTGACGAGATG............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGTGACGAGATGCGAGGCCTGG..2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTCCGTGACGAGATGCGAGGC......2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCAGATGTCCGTGACGAGATGCG..........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTCCGTGACGAGATGCGAGG.......2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACACT---------------------------------------------C---------CTCCTTGCTT-----C-TTTTATT......................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTT-----C-TTTTATTGCAGTGTCGTT...........................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTAATTGTCTCCCAGATGTCCGT.....................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTGACGAGATGCGAGGCCTGGCA2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTTAATTGTCTCCCAGATGTCCGT.....................2711.0010000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAGATGTCCGTGACGAGATGCGA.........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAGATGTCCGTGACGAGA..............2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATTGCAGTGTCGTTTAATTGTC...................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTGTCTCCCAGATGTCCGT.....................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTGACGAGATGCGAGGCCTGG..2411.0010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGACGAGATGCGAGGCCTGGC.2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGCAGTGTCGTTTAATTGTCTC.................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCCCAGATGTCCGTGACGAGAT.............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGTCCGTGACGAGATG............1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGAGATGCGAGGCCTG...1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................CGAAATTAAA--TAGTGACCAAATGACAC......................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGATGTCCGTGACGAGATGCGAGGCC.....2811.0010000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCCCAGATGTCCGTGACGAG...............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCAGATGTCCGTGACGAGA..............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------------------------------------------C---------CTCCTTGCTT-----C-TTTTATTGCAG..................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTGCAGTGTCGTTTAATTGTC...................................2411.0010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGTGACGAGATGCGAGGCCTGGC.2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGTCTCCCAGATGTCCGT.....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGTGACGAGATGCGAGGCCTGGC.2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTTAATTGTCTCCCAGATGTCCGT.....................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----C-TTTTATTGCAGTGTCGTTTAATT......................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTGTCTCCCAGATGTCCGTGACG.................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCTCCCAGATGTCCGTGACGAGA..............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGTGACGAGATGCGAGGCCTG...2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGTGACGAGATGCGAGGCC.....2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGTGACGAGATGCGAGGC......2211.0010000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATTGTCTCCCAGATGTCCGTGACGA................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGTGTCGTTTAATTGTCTCCCA..............................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
---CTCAAA-CGCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------C-------------------------------------------TTAAAGTTTCCATCGTGTTGCAAAGTTTAGTGCGTTTACAGTATAG---------ATTCAGAAAATT----------------TT-----------------------------------------------------------------------------GTTTTTGAATATGAACACTGTTCTGACGAAATTAAA---AGTGACCAAATGACACT---------------------------------------------A---------CTCCTTGCTT-----C-TTTTATTGCAGTGTCGTTTGATTGTCTCACAGATGTCCGTGACGAGATGCGAGGCCTGGCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACAGATGTCCGTGACGAGATGCGA.........2611.00100000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCACAGATGTCCGTGACGAGATGCGA.........2711.00100000000010000000
.....................................................................................................................................................................................................................................TCCATCGTGTTGCAAAGTT....................................................................................................................................................................................................................................................................................................................................1911.00100001000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCTCACAGATGTCCGTGACGAGA..............2611.00100000001000000000
droSec2
---CTCAAA-CGCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------C-------------------------------------------TTAAAGTTTCCATCGCGTTGAAAAGTTTATTGCGTTTACAGTATAG---------ATTCAGAAAATT----------------TT-----------------------------------------------------------------------------GTTTTTGAATATGAACACTGTTCTGACGAAATTAAA---AGTGACCAAATGACACT---------------------------------------------A---------CTCCTTGCTT-----C-TCTTATTGCAGTGTCGTTTGATTGTCTCACAGATGTCCGTGACGAGATGCGAGGCCTGGCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGTCTCACAGATGTCCG......................2011.0010010
......................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGACCAAATGACACG---------------------------------------------T---------T.............................................................................19200.0511000
droYak3
---CT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-------------------------------------------TTAAAGTTCCCATCGTGTTGCAGGGTTTAATGCGTTTACTGTAAAGAT----TGAATTCAGCAAATTGAAA---------------------------TTAT-----------TTT----------------------------------------AGATGGGTTTTCAAGTATTAACATTTTTCTGACGAAATTAAA--CAGTGACCAAATGACA-T---------------------------------------------A---------CTACTTGTAT-----C-TCTTGTTTCAGTGTCGTTTGATTGTCTCCCAGATGTCCGTGACAAGATGTGAGGCGTGGCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTTGTAT-----C-TCTTGTTT.....................................................1911.00100000100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGATTGTCTCCCAGATGTCCGT.....................2511.00100000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGATGTGAGGCGTGGC.2011.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTCCGTGACAAGATGTGAGGCGT....2611.00100000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTCTCCCAGATGTCCGT.....................2011.00100000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTGTCTCCCAGATGTCCGT.....................2211.00100000010000
droEre2
AAACTTAAA-CGCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------C-------------------------------------------TTGAAGTTCCCTTCGTGTTGCAAAGTTTAGTGCGCTTACAGTAAAGAT----TGGATTCAGCAAATTTAAG---------------------------AGAT-----------TTT----------------------------------------AGCTGGGTTTTCAAATATTAACATTTTTCTGACGAAATTAAA--TGGTGACCAAATGACATA---------------------------------------------C---------TTCTACGTAT-----C-TCTTATTTCAGTGTCGTTTGATTGTCTCCCAGATGTCCGTGACAAGATGTGAGGCGTGGCASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACAAGATGTGAGGCGTGGCA2311.0011000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTGACAAGATGTGAGGCGTGGCA2611.0011000000

Generated: 05/18/2015 at 12:45 AM