ID:

dmo_1572

 Coordinate:

scaffold_6500:16138398-16138467 -

 Confidence:

candidate

 Class:

Mirtron

 Genomic Locale:

intron

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.6 -12.8

Flybase annnotation

intron [Dmoj\GI10257-in]; CDS [Dmoj\GI10257-cds]; CDS [Dmoj\GI10257-cds]

No Repeatable elements found

Sense Strand Reads

GGCGACGACGCCCAACAAACCACAGACCGCGGATGCCAGTTGCCTAACTGGTGAGTTGTGCAATTGTTTGACTGTAATTAACCGCTTGCTAATTACTTCCATCTGTTCACACCCTCACAGATTTGTGCAGTAACGAGAATTTGCCGGAGGTGGAAATATTTTCATTGCTG

**************************************************(((((.((((.(((....((...(((((((.........)))))))...))...)))))))..)))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total V110

male body		 M046

female body

 M060

embryo

 V056

head

 V041

embryo

 V049

head
..................................................GTGAGTTGTGCAATTGTTTGACTGTAAT............................................................................................ 28 0 1 44.00 44 23 20 1 0 0 0
..................................................GTGAGTTGTGCAATTGTTTGACTGTA.............................................................................................. 26 0 1 41.00 41 29 10 0 2 0 0
..................................................GTGAGTTGTGCAATTGTTTGACTGTAA............................................................................................. 27 0 1 29.00 29 21 7 0 1 0 0
..................................................GTGAGTTGTGCAATTGTTTGACTGT............................................................................................... 25 0 1 18.00 18 7 11 0 0 0 0
..................................................GTGAGTTGTGCAATTGTTTGACTG................................................................................................ 24 0 1 7.00 7 6 0 0 1 0 0
..................................................GTGAGTTGTGCAATTGTTTGACT................................................................................................. 23 0 1 6.00 6 2 4 0 0 0 0
....................................................GAGTTGTGCAATTGTTTGACTGTAAT............................................................................................ 26 0 1 6.00 6 2 4 0 0 0 0
..................................................GTGAGTTGTGCAATTGTTTGAC.................................................................................................. 22 0 1 5.00 5 1 1 2 0 1 0
..................................................GTGAGTTGTGCAATTGTTTGA................................................................................................... 21 0 1 4.00 4 3 1 0 0 0 0
..................................................GTGAGTTGTGCAATTGTTTGACTGTAATT........................................................................................... 29 0 1 3.00 3 3 0 0 0 0 0
....................................................GAGTTGTGCAATTGTTTGACTG................................................................................................ 22 0 1 3.00 3 0 3 0 0 0 0
....................................................GAGTTGTGCAATTGTTTGACTGTAA............................................................................................. 25 0 1 3.00 3 2 1 0 0 0 0
..............................................................................................ACTTCCATCTGTTCACACCCT....................................................... 21 0 1 2.00 2 0 2 0 0 0 0
.......................................................TTGTGCAATTGTTTGACTGTAAT............................................................................................ 23 0 1 2.00 2 0 2 0 0 0 0
......................................................GTTGTGCAATTGTTTGACT................................................................................................. 19 0 1 2.00 2 0 2 0 0 0 0
........................................................TGTGCAATTGTTTGACTGTA.............................................................................................. 20 0 1 2.00 2 1 1 0 0 0 0
......................................................GTTGTGCAATTGTTTGACTGTAATT........................................................................................... 25 0 1 2.00 2 1 1 0 0 0 0
..................................................GTGAGTTGTGCAATTGTTT..................................................................................................... 19 0 1 2.00 2 2 0 0 0 0 0
...........................................................................................ATTACTTCCATCTGTTCACACCCTCACAG.................................................. 29 0 1 2.00 2 0 2 0 0 0 0
.........................................................................................TAATTACTTCCATCTGTTCACACCCTCA..................................................... 28 0 1 1.00 1 0 1 0 0 0 0
...............................................................................AACCGCTTGCTAATTACTTCCATCTGT................................................................ 27 0 1 1.00 1 0 1 0 0 0 0
..................................................GTGAGTTGTGCAATTGTTTG.................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0
....................................................................................................ATCTGTTCACACCCTCACAGTA................................................ 22 2 1 1.00 1 0 1 0 0 0 0
................................................................................................TTCCATCTGTTCACACCCTC...................................................... 20 0 1 1.00 1 0 1 0 0 0 0
..............................................................................................ACTTCCATCTGTTCACACCCTC...................................................... 22 0 1 1.00 1 0 1 0 0 0 0
.......................AGACCGCGGATGCCAGTTGC............................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0
.....................................................AGTTGTGCAATTGTTTGACTG................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0
............CAACAAACCACAGACCGCGGATGCCAGT.................................................................................................................................. 28 0 1 1.00 1 0 1 0 0 0 0
.......................................................TTGTGCAATTGTTTGACTGTA.............................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0
...............................................................................................CTTCCATCTGTTCACACCCTCACA................................................... 24 0 1 1.00 1 0 1 0 0 0 0
..................................................GTGAGTTGTGCAATTGTTTAACTGTAAT............................................................................................ 28 1 1 1.00 1 0 1 0 0 0 0
...............................................................................................CTTCCATCTGTTCACACCCTCA..................................................... 22 0 1 1.00 1 0 1 0 0 0 0
............................................................................................TTACTTCCATCTGTTCACACCCT....................................................... 23 0 1 1.00 1 0 1 0 0 0 0
..................................................GTGAGTTGTGCAATTGTT...................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0
....................................................................................................ATCTGTTCACACCCTCACAGT................................................. 21 1 1 1.00 1 0 1 0 0 0 0
....................................................GAGTTGTGCAATTGTTTGACT................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0
......................................................GTTGTGCAATTGTTTGACTGT............................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0
...........................................................................................ATTACTTCCATCTGTTCACACC......................................................... 22 0 1 1.00 1 0 1 0 0 0 0
.................................................................................................................................GTAACGAGAATTTGCCGGAGGTGGA................ 25 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................GAATTTGCCGGAGGTGGAA............... 19 0 1 1.00 1 1 0 0 0 0 0
.................AACCACAGACCACGGATGCCAGTTGC............................................................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0
............................................................................................TTACTTCCATCTGTTCACACCCTCA..................................................... 25 0 1 1.00 1 0 1 0 0 0 0
..................................................................................................CCATCTGTTCACACCCTCACAG.................................................. 22 0 1 1.00 1 0 1 0 0 0 0
.....................................................................................TTGCTAATTACTTCCATCTGTTCACACCC........................................................ 29 0 1 1.00 1 0 0 1 0 0 0
...........................................................................................ATTACTTCCATCTGTTCACACCCT....................................................... 24 0 1 1.00 1 0 1 0 0 0 0
..................................................GTGATTTGTGCAATTGTTTGAC.................................................................................................. 22 1 1 1.00 1 0 0 1 0 0 0
.......................................................TTGTGCAATTGTTTGACTGTAA............................................................................................. 22 0 1 1.00 1 0 1 0 0 0 0
......................................................GTTGTGCAATTGTTTGACTGTAAT............................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0
....................................................................................CTTGCTAATTACTTCCATCTGTTCAC............................................................ 26 0 1 1.00 1 0 1 0 0 0 0
...................................................TGAGTTGTGCAATTGTTTGACTGTAAT............................................................................................ 27 0 1 1.00 1 0 1 0 0 0 0
....................................................GAGTTGTGCAATTGTTTGACTGTAATT........................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0
......................................................GTTGTGCAATTGTTTGACTGTA.............................................................................................. 22 0 1 1.00 1 0 1 0 0 0 0
..................................................GTGAGTTGTGCAATTGTTTGACTTTAA............................................................................................. 27 1 1 1.00 1 0 0 0 0 0 1
..................................................GTGAGTTGTGCAATTGTCTGACTGTAA............................................................................................. 27 1 1 1.00 1 1 0 0 0 0 0
.........................................................GTGCAATTGTTTGACTGTAAT............................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0
............CAACAAACCACAGACCGCGGATGC...................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0
............................................................................................................................................TTGCCGGAGGGGGAAACA............ 18 2 3 0.33 1 0 1 0 0 0 0

Anti-sense strand reads

CCGCTGCTGCGGGTTGTTTGGTGTCTGGCGCCTACGGTCAACGGATTGACCACTCAACACGTTAACAAACTGACATTAATTGGCGAACGATTAATGAAGGTAGACAAGTGTGGGAGTGTCTAAACACGTCATTGCTCTTAAACGGCCTCCACCTTTATAAAAGTAACGAC

**************************************************(((((.((((.(((....((...(((((((.........)))))))...))...)))))))..)))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total V056

head

 V110

male body
.........................TGTCGCCTACGGTCCACGGATT........................................................................................................................... 22 2 1 1.00 1 1 0
..............................................................................TTTGGCGAACGAGTAATGG......................................................................... 19 3 17 0.06 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droMoj3 scaffold_6500:16138348-16138517 - dmo_1572 candidate GGCGACGAC----------------------------------------------GCCCA-ACAAACCACAGACCGCGGATGCCAGTTGCCTAACTGGTGAGTTG-------------------TG-----------------------CAATTGT----------------------TTG-ACT-GT------------------------------------------------------------------------AATTAACCGCTTGCTAATTACTT---CCATCTG-TTCA---C----------------------------------------ACCC-------TCACAGATTTGTGCAGTAACGAGAATTTGCCGGAGGTGGAAATATTTTCATTGCTG
droVir3 scaffold_12723:2872093-2872273 - dvi_1389 GGCGGCGGCG--------------------------------TCGAC-GG----CGGCCA-ACAAACCACAGACCGCCGATGCCAGTTGCTTAACTGGTAAGTTG-------------------TG-----------------------TAATTAT----------------------TTGTACT-GT-----------------------------------------------------------------------TTGTTAAGCGTTTGCTAATGTATTAC--------TTTAT---C-------------------------------------------ACACAAACACACAGATTTGTGCAGCAGCGAGAACTTGCCGGAGGTGGAAATATTTTCATTGCTG
droGri2 scaffold_15126:618609-618778 + AACGACGGTG--------------------------------G-----------CAAGCA-GCAAACCGCAAACAGCCGACGCCGGTTGCCTAACGGGTGAGCTACTTGTGGCCCCATATTTATTG-----------------------T------------------------------------------------------------------------------------------------------------------AA-----------TT-GTTCA--------TATTT---AATATACCATATA----------------------------TCGT-------TTATAGATCTGTGCAGCAGCGAGCACTTGCCCGAGGTGGAGATATTTTCGTTGCTG
droWil2 scf2_1100000004521:5115745-5115974 + GACGACGACGACGACGACTGCGACAGGGGCACAAAATCAGAAACAG-TTGCTGCAAT-CACATAGACCACAGACCTGCGATGCCAGTTGCCTAACAGGTAAGTGT-----------------------------------------------------------------------------------------------------------------------TAAATGAAAT------------------------------AATAT-----------TT---------TG-TTATATTACTTTGCTAACTAGCTAACTTGTCTCTCTCTCTCTCTATCTATAT-------ATACAGATCTATGCAGTAACGAAAATATACCAGAGGTGGAAATATTTTCATTGCTA
dp5 4_group1:3602884-3603062 - GGCGACGGCA--------------------------------GCAGC-AG-CCGCCC-CACCAAAACCACAGACCTGCGATGCCAGTTGCCTAACCGGTAGGAGG-ATATAACCCGCTAATTC----------------------------------------------------------------T------------------------------------------------------------------------CAT-AG--CCCTGCTAATCGCTT--AATTGATG-T--T---C----------------------------------------ATTT-------TTGCAGAGCTGTGCAGCAGCGAGAATCTGCCGGAGGTGGAGATATTTTCATTGCTG
droPer2 scaffold_5:1610404-1610582 + GGCGACGGCA--------------------------------GCAGC-AG-CCGCCC-CACCAAAACCACAGACCTGCGATGCCAGTTGCCTAACCGGTAGGAGG-ATATAACCCGCTAATTC----------------------------------------------------------------T------------------------------------------------------------------------CAT-AG--CCATGCTAATCTCTT--AATTGATG-T--T---C----------------------------------------ATTT-------TTGCAGAGCTGTGCAGCAGCGAGAATCTGCCGGAGGTGGAGATATTTTCATTGCTG
droAna3 scaffold_12916:111693-111871 + GGCGACCCAG-------------------------------------GTGTCCGCAT-CGCCGAAGCCCCAGACCTGCGATGCCAGTTGCCTGACGGGTGAGCCA-------------------TGATTTCCAATTCGGAAC-------T--------------------------------------------------------------------------------------------------------------AATTAACAGCTTGA--------------------CACT---AATGTTCCACATATA--------------------------ACCG-------TTTCAGAGCTGTGCAGTAGCGAGAACCTGCCCGAGGTGGAGATATTTTCGCTGCTG
droBip1 scf7180000396554:2169910-2170068 - GGCCTCCCC----------------------------------------------AG-CACCGAAGCCCCAAACCTGCGATGCCAGTTGTCTAACAGGTGAGCTA-A------------------C-----------------------TAATT--------------------------------------------------------------------------------------------------------------AAGAT-----------CTTCA---------CACT---AATATTCTAACTATAAACCT---------------------TTTT-------TTTTAGAGCTCTGCAGTAGCGAGAACCTGCCCGAAGTGGAGATCTTTTCGCTGCTG
droKik1 scf7180000302468:544522-544599 + -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTAATTTGTT--------TGTTT----------------------------------------------ATTT------ATTGCAGAGCTGTGCAGCAGCGAGAACCTGCCCGAAGTGGAGATCTTTTCGCTGCTA
droFic1 scf7180000454111:810315-810391 + T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTAATTCATTCA--------TTTTA---C-------------------------------------------A-------CCGCAGAGCTGTGCAGCAGCGAGAACCTGCCCGAGGTGGAGATTTTTTCGCTGCTG
droEle1 scf7180000490640:247963-248081 - GT--------------------------------------------------------------------------TTGACTGTAGTTGCATTATGAACAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------TTGTGTAC-CA--TCCTGCTAATTGATTTA--------TTTCT---A-------------------------------------------A-------CCACAGAACTGTGCAGCAGCGAAAACCTGCCTGAGGTGGAGATTTTTTCGCTGCTA
droRho1 scf7180000779930:149373-149454 + -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTGCTAATG-ATTCA--------TTTCT---AA---------------------------------------TATA-------CCACAGAGCTATGCAGCAGCGAGAACCTGCCCGAGGTGGAGATTTTTTCCCTGCTA
droBia1 scf7180000302422:8688319-8688373 + ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCAGAGCTGTGCAGCAGCGAGAACCTGCCCGAGGTGGAGATTTTTTCGCTGCTG
droTak1 scf7180000416008:308253-308308 + -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCACAGAGCTGTGCAGCAGCGAGAACCTGCCCGAGGTGGAGATTTTTTCGCTGCTG
droEug1 scf7180000409463:168192-168274 + -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGCTAATATATTCA--------TTTCT---T---------------------------------------AATAA-------CATCAGAACTATGCAGCAGCGAAAACCTGCCCGAGGTGGAGATCTTTTCGCTGCTG
dm3 chr2L:7040719-7040999 + GACGC-AGTT--------------------------------GCAG-TCGCCGGCTGCCG-CCAGACCACAGACCTGCGATGCCAGCTGCCTGACGGGTGAGCAA-AT-----------------CATTTCGATCTCAA--CTACAGTCCAACTATCACAAGCTAAGCTTA------------TCCATCCATTCATCGTTTTTCTGTGGTAAATCTTAGCATGGTAGTTGAATTGCAGGTGCACTCTAAACAAAATTTCACAC-AA--ACGTGCTAATATATT--A-----TG-TTGT---A----------------------------------------ATAT-------TCACAGAGCTGTGCAGCAGCGAGAATTTGCCCGAGGTGGAGATTTTCTCACTGCTG
droSim2 2l:6801570-6801825 + dsi_16668 G-----------------------------------------------------------------------ACCTGCGATGCCAGCTGCCTGACGGGTGAGCAA-AT-----------------CATTTCGATCTCGA--CCACAGTGCAACTACCACGAGCTAAGCTTACATGACTGAGTACTCGTCCATTAGGCCTTTTTCTGTGGCAAATCTGAGCTTGGTAGTTGAACTGCAGGTGCACTCTAAACAA-ACTTCACAC-AA--TCGTGCTAATATATT--A-----TG-TTGT---A----------------------------------------ATAT-------TCACAGAGCTGTGCAGCAGCGAGAATCTGCCCGAGGTGGAGATTTTCTCGCTGCTG
droSec2 scaffold_3:2565832-2565887 + -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCACAGAGCTGTGCAGCAGCGAGAATCTGCCCGAGGTGGAGATTTTTTCGCTGCTG
droYak3 2L:5872424-5872479 - -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCACAGAGCTGTGCAGCAGCGAGAATCTGCCCGAGGTGGAGATTTTTTCGCTGCTG
droEre2 scaffold_4929:15951677-15951761 + -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTAATATACT--GATATATG-TTGT---A----------------------------------------ATTT-------TCACAGAGCTATGCAGCAGCGAGAATCTGCCCGAGGTGGAGATTTTTTCGCTGCTG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
GGCGACGAC----------------------------------------------GCCCA-ACAAACCACAGACCGCGGATGCCAGTTGCCTAACTGGTGAGTTG-------------------TG-----------------------CAATTGT----------------------TTG-ACT-GT------------------------------------------------------------------------AATTAACCGCTTGCTAATTACTT---CCATCTG-TTCA---C----------------------------------------ACCC-------TCACAGATTTGTGCAGTAACGAGAATTTGCCGGAGGTGGAAATATTTTCATTGCTGSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
.................................................................................................GTGAGTTG-------------------TG-----------------------CAATTGT----------------------TTG-ACT-GT------------------------------------------------------------------------AAT..................................................................................................................................................28144.004420000123
.................................................................................................GTGAGTTG-------------------TG-----------------------CAATTGT----------------------TTG-ACT-GT------------------------------------------------------------------------A....................................................................................................................................................26141.004110002029
.................................................................................................GTGAGTTG-------------------TG-----------------------CAATTGT----------------------TTG-ACT-GT------------------------------------------------------------------------AA...................................................................................................................................................27129.00297001021
.................................................................................................GTGAGTTG-------------------TG-----------------------CAATTGT----------------------TTG-ACT-GT------------------------------------------------------------------------.....................................................................................................................................................25118.00181100007
.................................................................................................GTGAGTTG-------------------TG-----------------------CAATTGT----------------------TTG-ACT-G..............................................................................................................................................................................................................................2417.007000106
.................................................................................................GTGAGTTG-------------------TG-----------------------CAATTGT----------------------TTG-ACT-...............................................................................................................................................................................................................................2316.006400002
...................................................................................................GAGTTG-------------------TG-----------------------CAATTGT----------------------TTG-ACT-GT------------------------------------------------------------------------AAT..................................................................................................................................................2616.006400002
.................................................................................................GTGAGTTG-------------------TG-----------------------CAATTGT----------------------TTG-AC.................................................................................................................................................................................................................................2215.005110021
.................................................................................................GTGAGTTG-------------------TG-----------------------CAATTGT----------------------TTG-A..................................................................................................................................................................................................................................2114.004100003
.................................................................................................GTGAGTTG-------------------TG-----------------------CAATTGT----------------------TTG-ACT-GT------------------------------------------------------------------------AATT.................................................................................................................................................2913.003000003
...................................................................................................GAGTTG-------------------TG-----------------------CAATTGT----------------------TTG-ACT-G..............................................................................................................................................................................................................................2213.003300000
...................................................................................................GAGTTG-------------------TG-----------------------CAATTGT----------------------TTG-ACT-GT------------------------------------------------------------------------AA...................................................................................................................................................2513.003100002
.......................................................................................................................................................................................................................................................................................ACTT---CCATCTG-TTCA---C----------------------------------------ACCC-------T.......................................................2112.002200000
......................................................................................................TTG-------------------TG-----------------------CAATTGT----------------------TTG-ACT-GT------------------------------------------------------------------------AAT..................................................................................................................................................2312.002200000
.....................................................................................................GTTG-------------------TG-----------------------CAATTGT----------------------TTG-ACT-...............................................................................................................................................................................................................................1912.002200000
.......................................................................................................TG-------------------TG-----------------------CAATTGT----------------------TTG-ACT-GT------------------------------------------------------------------------A....................................................................................................................................................2012.002100001
.....................................................................................................GTTG-------------------TG-----------------------CAATTGT----------------------TTG-ACT-GT------------------------------------------------------------------------AATT.................................................................................................................................................2512.002100001
.................................................................................................GTGAGTTG-------------------TG-----------------------CAATTGT----------------------TT.....................................................................................................................................................................................................................................1912.002000002
....................................................................................................................................................................................................................................................................................ATTACTT---CCATCTG-TTCA---C----------------------------------------ACCC-------TCACAG..................................................2912.002200000
..................................................................................................................................................................................................................................................................................TAATTACTT---CCATCTG-TTCA---C----------------------------------------ACCC-------TCA.....................................................2811.001100000
........................................................................................................................................................................................................................................................................AACCGCTTGCTAATTACTT---CCATCTG-T..................................................................................................................2711.001100000
.................................................................................................GTGAGTTG-------------------TG-----------------------CAATTGT----------------------TTG-...................................................................................................................................................................................................................................2011.001100000
................................................................................................................................................................................................................................................................................................ATCTG-TTCA---C----------------------------------------ACCC-------TCACAGTA................................................2211.001100000
.........................................................................................................................................................................................................................................................................................TT---CCATCTG-TTCA---C----------------------------------------ACCC-------TC......................................................2011.001100000
.......................................................................................................................................................................................................................................................................................ACTT---CCATCTG-TTCA---C----------------------------------------ACCC-------TC......................................................2211.001100000
......................................................................AGACCGCGGATGCCAGTTGC...............................................................................................................................................................................................................................................................................................................................2011.001100000
....................................................................................................AGTTG-------------------TG-----------------------CAATTGT----------------------TTG-ACT-G..............................................................................................................................................................................................................................2111.001100000
..........................................................CA-ACAAACCACAGACCGCGGATGCCAGT..................................................................................................................................................................................................................................................................................................................................2811.001100000
......................................................................................................TTG-------------------TG-----------------------CAATTGT----------------------TTG-ACT-GT------------------------------------------------------------------------A....................................................................................................................................................2111.001100000
........................................................................................................................................................................................................................................................................................CTT---CCATCTG-TTCA---C----------------------------------------ACCC-------TCACA...................................................2411.001100000
........................................................................................................................................................................................................................................................................................CTT---CCATCTG-TTCA---C----------------------------------------ACCC-------TCA.....................................................2211.001100000
.....................................................................................................................................................................................................................................................................................TTACTT---CCATCTG-TTCA---C----------------------------------------ACCC-------T.......................................................2311.001100000
.................................................................................................GTGAGTTG-------------------TG-----------------------CAATTGT----------------------T......................................................................................................................................................................................................................................1811.001100000
................................................................................................................................................................................................................................................................................................ATCTG-TTCA---C----------------------------------------ACCC-------TCACAGT.................................................2111.001100000
...................................................................................................GAGTTG-------------------TG-----------------------CAATTGT----------------------TTG-ACT-...............................................................................................................................................................................................................................2111.001100000
.....................................................................................................GTTG-------------------TG-----------------------CAATTGT----------------------TTG-ACT-GT------------------------------------------------------------------------.....................................................................................................................................................2111.001100000
....................................................................................................................................................................................................................................................................................ATTACTT---CCATCTG-TTCA---C----------------------------------------ACC................................................................2211.001100000
................................................................................................................................................................................................................................................................................................................................................................................GTAACGAGAATTTGCCGGAGGTGGA................2511.001000001
.......................................................................................................................................................................................................................................................................................................................................................................................GAATTTGCCGGAGGTGGAA...............1911.001000001
.....................................................................................................................................................................................................................................................................................TTACTT---CCATCTG-TTCA---C----------------------------------------ACCC-------TCA.....................................................2511.001100000
..............................................................................................................................................................................................................................................................................................CCATCTG-TTCA---C----------------------------------------ACCC-------TCACAG..................................................2211.001100000
..............................................................................................................................................................................................................................................................................TTGCTAATTACTT---CCATCTG-TTCA---C----------------------------------------ACCC-------........................................................2911.001000010
....................................................................................................................................................................................................................................................................................ATTACTT---CCATCTG-TTCA---C----------------------------------------ACCC-------T.......................................................2411.001100000
......................................................................................................TTG-------------------TG-----------------------CAATTGT----------------------TTG-ACT-GT------------------------------------------------------------------------AA...................................................................................................................................................2211.001100000
.....................................................................................................GTTG-------------------TG-----------------------CAATTGT----------------------TTG-ACT-GT------------------------------------------------------------------------AAT..................................................................................................................................................2411.001000001
.............................................................................................................................................................................................................................................................................CTTGCTAATTACTT---CCATCTG-TTCA---C----------------------------------------...................................................................2611.001100000
..................................................................................................TGAGTTG-------------------TG-----------------------CAATTGT----------------------TTG-ACT-GT------------------------------------------------------------------------AAT..................................................................................................................................................2711.001100000
...................................................................................................GAGTTG-------------------TG-----------------------CAATTGT----------------------TTG-ACT-GT------------------------------------------------------------------------AATT.................................................................................................................................................2711.001100000
.....................................................................................................GTTG-------------------TG-----------------------CAATTGT----------------------TTG-ACT-GT------------------------------------------------------------------------A....................................................................................................................................................2211.001100000
........................................................................................................G-------------------TG-----------------------CAATTGT----------------------TTG-ACT-GT------------------------------------------------------------------------AAT..................................................................................................................................................2111.001100000
..........................................................CA-ACAAACCACAGACCGCGGATGC......................................................................................................................................................................................................................................................................................................................................2411.001100000
droVir3
GGCGGCGGCG--------------------------------TCGAC-GG----CGGCCA-ACAAACCACAGACCGCCGATGCCAGTTGCTTAACTGGTAAGTTG-------------------TG-----------------------TAATTAT----------------------TTGTACT-GT-----------------------------------------------------------------------TTGTTAAGCGTTTGCTAATGTATTAC--------TTTAT---C-------------------------------------------ACACAAACACACAGATTTGTGCAGCAGCGAGAACTTGCCGGAGGTGGAAATATTTTCATTGCTGSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.......................................................................................................................................................................................................................................................................TAAGCGTTTGCTAATGTATTAC--------TT..................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000002000000000000000
................................................................................................................................................................................................................................................................................................................................................................................GCAGCGAGAACTTGCCGGAGGTGGA................2512.0020000000000000000000000000000000000000000000000000000000000000000000002000000000
.................................................................................................GTAAGTTG-------------------TG-----------------------TAATTAT----------------------TTGTACT-GT-----------------------------------------------------------------------......................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000002000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................GAGAACTTGCCGGAGGTGGA................2012.0020010000000000000000000000000000000000000000000000000000000000000000000000000001
.......................................................................................................................................................................................................................................................................................................................................................................................GAACTTGCCGGAGGTGGAA...............1912.0020000000000000000001000000000000000000000000000000000000000000000000010000000000
..................................................................................................................................................................................................................................................................................................................................................................................AGCGAGAACTTGCCGGAGGTGGAA...............2412.0020000000000000000000000000000000000000000000000000000000000000000000010001000000
....................................................................ACAGACCGCCGATGCCAGT..................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000001000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................TGTGCAGCAGCGAGAACTT............................1911.0010000000000000100000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................AAGCGTTTGCTAATGTATTAC--------TTTA................................................................................................................2511.0010000000000000000000000000000100000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................GAACTTGCCGGAGGTGGA................1811.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................AACTTGCCGGAGGTGGAA...............1811.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................AACTTGCCGGAGGTGGAAATATTT.........2411.0010000000000000000010000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................AGCAGCGAGAACTTGCCGGAGGTGGA................2611.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGCCGGAGGTGGAAAT.............2211.0011000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................AGCGAGAACTTGCCGGAGGTGGA................2311.0010000000000000000010000000000000000000000000000000000000000000000000000000000000
.............................................................................CGATGCCAGTTGCTTAACTG........................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000010000000000
.......................................................GGCCA-ACAAACCACAGACCGC............................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000100000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................CTTGCCGGAGGTGGAAAT.............1811.0010000000000000000000000000000000000001000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................GATTTGTGCAGCAGCGAGA................................1911.0010000000000000000000000000000000000000000000000000000000000000100000000000000000
droGri2
AACGACGGTG--------------------------------G-----------CAAGCA-GCAAACCGCAAACAGCCGACGCCGGTTGCCTAACGGGTGAGCTACTTGTGGCCCCATATTTATTG-----------------------T------------------------------------------------------------------------------------------------------------------AA-----------TT-GTTCA--------TATTT---AATATACCATATA----------------------------TCGT-------TTATAGATCTGTGCAGCAGCGAGCACTTGCCCGAGGTGGAGATATTTTCGTTGCTGSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
...........................................................................................................................................................................................................................................................................................................................................................................GTGCAGCAGCGAGCACTTGCCC........................2211.00110
droWil2
GACGACGACGACGACGACTGCGACAGGGGCACAAAATCAGAAACAG-TTGCTGCAAT-CACATAGACCACAGACCTGCGATGCCAGTTGCCTAACAGGTAAGTGT-----------------------------------------------------------------------------------------------------------------------TAAATGAAAT------------------------------AATAT-----------TT---------TG-TTATATTACTTTGCTAACTAGCTAACTTGTCTCTCTCTCTCTCTATCTATAT-------ATACAGATCTATGCAGTAACGAAAATATACCAGAGGTGGAAATATTTTCATTGCTASizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
...........CGACGACTGCGACAGGGG............................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
.......................................................AT-CACATAGACCACAGACC..............................................................................................................................................................................................................................................................................................................................................1911.00110000
.....CGACGACGACGACTGCGACAGGG.............................................................................................................................................................................................................................................................................................................................................................................................2311.00101000
......................................................AAT-CACATAGACCACAGAC...............................................................................................................................................................................................................................................................................................................................................1911.00101000
..........ACGACGACTGCGACAGGGGCACAAAAT....................................................................................................................................................................................................................................................................................................................................................................................2711.00100100
............................................................CATAGACCACAGACCTGCGAC........................................................................................................................................................................................................................................................................................................................................2111.00110000
......................................................AAT-CACATAGACCACAGACCT.............................................................................................................................................................................................................................................................................................................................................2111.00101000
...................................................................CACAGACCTGCGATGCCAGTTGCC..............................................................................................................................................................................................................................................................................................................................2411.00100010
...............GACTGCGACAGGGGCACAA.......................................................................................................................................................................................................................................................................................................................................................................................1911.00101000
........CGACGACGACTGCGACAGGGGCACA........................................................................................................................................................................................................................................................................................................................................................................................2511.00100100
....................................TCAGAAACAG-TTGCTGCAAT-...............................................................................................................................................................................................................................................................................................................................................................2011.00100010
..............................ACAAAATCAGAAACAG-TTGCT.....................................................................................................................................................................................................................................................................................................................................................................2111.00100010
............................................................CATAGACCACAGACCTGCGAT........................................................................................................................................................................................................................................................................................................................................2111.00110000
..............CGACTGCGACAGGGGCACAAAAT....................................................................................................................................................................................................................................................................................................................................................................................2311.00101000
........CGACGACGACTGCGACAGGGG............................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
................................................................................................................................................................................................................................................................................................................................................................................................AGAGGTGGAAATATTTTC.......1811.00100010
...........................................CAG-TTGCTGCAAT-CACATA.........................................................................................................................................................................................................................................................................................................................................................1911.00101000
...........................................................................................................................................................................................................................................................................................................................................................................................ATACCAGAGGTGGAAATAT...........1911.00100010
................................................TGCTGCAAT-CACATAGACCACA..................................................................................................................................................................................................................................................................................................................................................2211.00101000
..CGACGACGACGACGACTGC....................................................................................................................................................................................................................................................................................................................................................................................................19160.06100010
dp5
GGCGACGGCA--------------------------------GCAGC-AG-CCGCCC-CACCAAAACCACAGACCTGCGATGCCAGTTGCCTAACCGGTAGGAGG-ATATAACCCGCTAATTC----------------------------------------------------------------T------------------------------------------------------------------------CAT-AG--CCCTGCTAATCGCTT--AATTGATG-T--T---C----------------------------------------ATTT-------TTGCAGAGCTGTGCAGCAGCGAGAATCTGCCGGAGGTGGAGATATTTTCATTGCTGSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
...........................................................................................................................................................................................................................................................................................................................................................................................CTGCCGGAGGTGGAGATCC...........19412.254902707573000
...........................................................................................................................................................................................................................................................................................................................................................................................CTGCCGGAGGTGGAGATC............18210.002001403120000
............................................................................................................................................................................................................................................................................................................................................................................................TGCCGGAGGTGGAGATCC...........18116.276934704690000
............................................................................................................................................................................................................................................................................................................................................................................................TGCCGGAGGTGGAGATCCA..........19205.1510308910373000
...........................................................................................................................................................................................................................................................................................................................................................................................CTGCCGGAGGTGGAGATCCA..........20202.054102910326000
.......................................................................GACCTGCGATGCCAGTTGC...............................................................................................................................................................................................................................................................................................................................1912.0020200000000
.........................................................................CCTGCGATGCCAGTTGCCT.............................................................................................................................................................................................................................................................................................................................1911.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................CTGCCGGAGGTGGAGATA............1811.0010100000000
...........................................................................TGCGATGCCAGTTGCCTAACCG........................................................................................................................................................................................................................................................................................................................2211.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................GAATCTGCCGGAGGTGGAGAT.............2111.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................CGAGAATCTGCCGGAGGTGGA................2111.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................GAGAATCTGCCGGAGGTGGA................2011.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................AGCAGCGAGAATCTGCCGGAGGTGGA................2611.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................CTGCCGGAGGTGGAGATAAA..........2020.5010010000000
............................................................................................................................................................................................................................................................................................................................................................................................TGCCGGAGGTGGAGATACA..........1940.2510100000000
............................................................................................................................................................................................................................................................................................................................................................................................TGCCGGAGGTGGAGATGA...........18200.0510100000000
droPer2
GGCGACGGCA--------------------------------GCAGC-AG-CCGCCC-CACCAAAACCACAGACCTGCGATGCCAGTTGCCTAACCGGTAGGAGG-ATATAACCCGCTAATTC----------------------------------------------------------------T------------------------------------------------------------------------CAT-AG--CCATGCTAATCTCTT--AATTGATG-T--T---C----------------------------------------ATTT-------TTGCAGAGCTGTGCAGCAGCGAGAATCTGCCGGAGGTGGAGATATTTTCATTGCTGSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
................................................................AACCACAGACCTGCGATGCCA....................................................................................................................................................................................................................................................................................................................................2111.001010000
....................................................................................................................................................................................................................................................................................................................................................................................CGAGAATCTGCCGGAGGT...................1811.001100000
....................................................................................................................................................................................................................................................................................................................................................................................CGAGAATCTGCCGGAGGTGG.................2011.001001000
...................................................................................................................................................................................................................................................................................................................................................................................GCGAGAATCTGCCGGAGGTGGAGAT.............2511.001000001
droAna3
GGCGACCCAG-------------------------------------GTGTCCGCAT-CGCCGAAGCCCCAGACCTGCGATGCCAGTTGCCTGACGGGTGAGCCA-------------------TGATTTCCAATTCGGAAC-------T--------------------------------------------------------------------------------------------------------------AATTAACAGCTTGA--------------------CACT---AATGTTCCACATATA--------------------------ACCG-------TTTCAGAGCTGTGCAGTAGCGAGAACCTGCCCGAGGTGGAGATATTTTCGCTGCTGSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
...GACCCAG-------------------------------------GTGTCCGCAT-CGCC...........................................................................................................................................................................................................................................................................................................................................................2111.001010000
.........G-------------------------------------GTGTCCGCAT-CGCCGAAGCC.....................................................................................................................................................................................................................................................................................................................................................2111.001010000
.............................................................................CGATGCCAGTTGCCTGACGG........................................................................................................................................................................................................................................................................................................................2011.001100000
...GACCCAG-------------------------------------GTGTCCGCAT-CGCCGAAG.......................................................................................................................................................................................................................................................................................................................................................2511.001001000
................................................................................................................................................................................................................................................................................................................................................................................GTAGCGAGAACCTGCCCGAGGTGGA................2511.001010000
.......................................................AT-CGCCGAAGCCCCAGACCTGCGATGCC.....................................................................................................................................................................................................................................................................................................................................2811.001100000
...........................................................................TGCGATGCCAGTTGCCTGACGGA.......................................................................................................................................................................................................................................................................................................................2311.001010000
droBip1
GGCCTCCCC----------------------------------------------AG-CACCGAAGCCCCAAACCTGCGATGCCAGTTGTCTAACAGGTGAGCTA-A------------------C-----------------------TAATT--------------------------------------------------------------------------------------------------------------AAGAT-----------CTTCA---------CACT---AATATTCTAACTATAAACCT---------------------TTTT-------TTTTAGAGCTCTGCAGTAGCGAGAACCTGCCCGAAGTGGAGATCTTTTCGCTGCTGSizeHit CountTotal NormTotal
No Reads
droKik1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTAATTTGTT--------TGTTT----------------------------------------------ATTT------ATTGCAGAGCTGTGCAGCAGCGAGAACCTGCCCGAAGTGGAGATCTTTTCGCTGCTASizeHit CountTotal NormTotal
No Reads
droFic1
T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTAATTCATTCA--------TTTTA---C-------------------------------------------A-------CCGCAGAGCTGTGCAGCAGCGAGAACCTGCCCGAGGTGGAGATTTTTTCGCTGCTGSizeHit CountTotal NormTotal
No Reads
droEle1
GT--------------------------------------------------------------------------TTGACTGTAGTTGCATTATGAACAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------TTGTGTAC-CA--TCCTGCTAATTGATTTA--------TTTCT---A-------------------------------------------A-------CCACAGAACTGTGCAGCAGCGAAAACCTGCCTGAGGTGGAGATTTTTTCGCTGCTASizeHit CountTotal NormTotal
No Reads
droRho1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTGCTAATG-ATTCA--------TTTCT---AA---------------------------------------TATA-------CCACAGAGCTATGCAGCAGCGAGAACCTGCCCGAGGTGGAGATTTTTTCCCTGCTASizeHit CountTotal NormTotal
No Reads
droBia1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCAGAGCTGTGCAGCAGCGAGAACCTGCCCGAGGTGGAGATTTTTTCGCTGCTGSizeHit CountTotal NormTotal
No Reads
droTak1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCACAGAGCTGTGCAGCAGCGAGAACCTGCCCGAGGTGGAGATTTTTTCGCTGCTGSizeHit CountTotal NormTotal
No Reads
droEug1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGCTAATATATTCA--------TTTCT---T---------------------------------------AATAA-------CATCAGAACTATGCAGCAGCGAAAACCTGCCCGAGGTGGAGATCTTTTCGCTGCTGSizeHit CountTotal NormTotal
No Reads
dm3
GACGC-AGTT--------------------------------GCAG-TCGCCGGCTGCCG-CCAGACCACAGACCTGCGATGCCAGCTGCCTGACGGGTGAGCAA-AT-----------------CATTTCGATCTCAA--CTACAGTCCAACTATCACAAGCTAAGCTTA------------TCCATCCATTCATCGTTTTTCTGTGGTAAATCTTAGCATGGTAGTTGAATTGCAGGTGCACTCTAAACAAAATTTCACAC-AA--ACGTGCTAATATATT--A-----TG-TTGT---A----------------------------------------ATAT-------TCACAGAGCTGTGCAGCAGCGAGAATTTGCCCGAGGTGGAGATTTTCTCACTGCTGSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
..........................................GCAG-TCGCCGGCTGCCG-CCAGAC......................................................................................................................................................................................................................................................................................................................................................2315.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005
......................................................................................................................................................................................................................................................................................................................................................................................AGAATTTGCCCGAGGTGGAGA..............2113.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000010
..................................................................CCACAGACCTGCGATGCCAGC..................................................................................................................................................................................................................................................................................................................................2112.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................CCAGCTGCCTGACGGGTGAGC..................................................................................................................................................................................................................................................................................................................2112.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000010000
GACGC-AGTT--------------------------------GCAG-TCGCCG....................................................................................................................................................................................................................................................................................................................................................................1912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................GAGCTGTGCAGCAGCGAGAATGCT...........................2412.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................GATGCCAGCTGCCTGACG.........................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................AGCGAGAATTTGCCCGAGGTGGAGA..............2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................AGCAGCGAGAATTTGCCCGAG.....................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................TGTGCAGCAGCGAGAATTTGCCCGAGGT...................2811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................ACGTGCTAATATATT--A-----TG-TTGT---............................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................CGAGAATTTGCCCGAGGTGGA................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
............................................................................................................................................................................................................................................................................................................................................................................TGCAGCAGCGAGAATTTGCCCGA......................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................ATTTCGATCTCAA--CTACAGT.....................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
...........................................................G-CCAGACCACAGACCTGCGATGCC.....................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................GCAG-TCGCCGGCTGCCG-CCAGAA......................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001
..................................................................................................................................................................................................................................................................................................................................................................................AGCGAGAATTTGCCCGAGGTGGAGAT.............2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....C-AGTT--------------------------------GCAG-TCGCCGGCTGCCG-............................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..CGC-AGTT--------------------------------GCAG-TCGCCGGCTG................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
.......GTT--------------------------------GCAG-TCGCCGGCTGCCG-CC..........................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................GAATTTGCCCGAGGTGGAG...............1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................GCGAGAATTTGCCCGAGGTGT.................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.....................................................................CAGACCTGCGATGCCAGCTG................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.....................................................................................................................................................................................................................................................................................................................................................................................GAGAATTTGCCCGAGGTG..................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.....................................................GCTGCCG-CCAGACCACAGACT..............................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................CAGACCACAGACCTGCGATGCCAGC..................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................CTGCCTGACGGGTGAGCAA-AT-----------------T...........................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................AGCAGCGAGAATTTGCCCGAGGTGGA................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................GCGAGAATTTGCCCGAGGTG..................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.ACGC-AGTT--------------------------------GCAG-TCGCCGGCT.................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
droSim2
G-----------------------------------------------------------------------ACCTGCGATGCCAGCTGCCTGACGGGTGAGCAA-AT-----------------CATTTCGATCTCGA--CCACAGTGCAACTACCACGAGCTAAGCTTACATGACTGAGTACTCGTCCATTAGGCCTTTTTCTGTGGCAAATCTGAGCTTGGTAGTTGAACTGCAGGTGCACTCTAAACAA-ACTTCACAC-AA--TCGTGCTAATATATT--A-----TG-TTGT---A----------------------------------------ATAT-------TCACAGAGCTGTGCAGCAGCGAGAATCTGCCCGAGGTGGAGATTTTCTCGCTGCTGSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
......................................................................................................................................................................................................TTTTTCTGTGGCAAATCTGAGC.............................................................................................................................................................................................22117.0017211400000000000000
........................................................................................................................................................................TTACATGACTGAGTACTCGTCC...........................................................................................................................................................................................................................22113.0013201100000000000000
..........................................................................................................................................................................................................TCTGTGGCAAATCTGAGC.............................................................................................................................................................................................1818.00810700000000000000
........................................................................................................................................................................................................TTTCTGTGGCAAATCTGAGC.............................................................................................................................................................................................2016.00611400000000000000
.......................................................................................................................................................................................................TTTTCTGTGGCAAATCTGAGC.............................................................................................................................................................................................2116.00612300000000000000
........................................................................................................................................................................TTACATGACTGAGTACTCGTCCA..........................................................................................................................................................................................................................2315.00510400000000000000
........................................................................................................................................................................TTACATGACTGAGTACTCGTC............................................................................................................................................................................................................................2115.00500500000000000000
.......................................................................................................................................................................CTTACATGACTGAGTACT................................................................................................................................................................................................................................1814.00402200000000000000
.........................................................................................................................................................................................................TTCTGTGGCAAATCTGAGC.............................................................................................................................................................................................1913.00301200000000000000
..................................................................................................................................................................................................GGCCTTTTTCTGTGGCAAATCTGAGC.............................................................................................................................................................................................2613.00300300000000000000
..........................................................................................................................................................................ACATGACTGAGTACTCGTC............................................................................................................................................................................................................................1913.00300300000000000000
.......................................................................................................................................................................CTTACATGACTGAGTACTCGTCC...........................................................................................................................................................................................................................2313.00300300000000000000
...................................................................................................................................................................................................GCCTTTTTCTGTGGCAAATCTGAGC.............................................................................................................................................................................................2513.00301200000000000000
.................................................................................................................................................................................................................CAAATCTGAGCTTGGTAG......................................................................................................................................................................................1812.00200200000000000000
........................................................................................................................................................................TTACATGACTGAGTACTCGT.............................................................................................................................................................................................................................2012.00200200000000000000
.......................................................................................................................................................................................................TTTTCTGTGGCAAATCTGAG..............................................................................................................................................................................................2012.00201100000000000000
.............................................................................................................................................................................TGACTGAGTACTCGTCCATTAGGC....................................................................................................................................................................................................................2412.00200100000000100000
.......................................................................................................................................................................................................................TGAGCTTGGTAGTTGAACTGCAGGTGCA......................................................................................................................................................................2811.00100000000000010000
....................................................................................................................................................................................................................ATCTGAGCTTGGTAGTTGAACTGC.............................................................................................................................................................................2411.00100100000000000000
.....................................................................................................................................................................................................CTTTTTCTGTGGCAAATCTGAGCTT...........................................................................................................................................................................................2511.00101000000000000000
.................................................................................................................................................................................................AGGCCTTTTTCTGTGGCAAATCTGAGC.............................................................................................................................................................................................2711.00100000000000100000
..........................................................................................................................................................................ACATGACTGAGTACTCGT.............................................................................................................................................................................................................................1811.00100100000000000000
..................................................................................................................................................................................................................................................................................................................................................................................AGCGAGAATCTGCCCG.......................1611.00100000000001000000
.............................................................................................................................................................................TGACTGAGTACTCGTCCATTAGGCC...................................................................................................................................................................................................................2511.00100100000000000000
........................................................................................................................................................................................................TTTCTGTGGCAAATCTGAGCT............................................................................................................................................................................................2111.00100100000000000000
.............................................................................................................................................................................................................GTGGCAAATCTGAGCTTGGTAGTA....................................................................................................................................................................................2411.00101000000000000000
...........................................................................................................................................................................CATGACTGAGTACTCGTCCATTAGGCC...................................................................................................................................................................................................................2711.00100100000000000000
........................................................................................................................................................................TTACATGACTGAGTACTC...............................................................................................................................................................................................................................1811.00100100000000000000
.....................................................................................................................................................................................................CTTTTTCTGTGGCAAATCTGAGC.............................................................................................................................................................................................2311.00110000000000000000
..........................................................................................................................................................................ACATGACTGAGTACTCGTCCATTAGGCC...................................................................................................................................................................................................................2811.00101000000000000000
.........................................................................................................................................................................................................TTCTGTGGCAAATCTGAGCTTGGTAGTT....................................................................................................................................................................................2811.00100100000000000000
......................................................................................................................................................................GCTTACATGACTGAGTACTCGTCCA..........................................................................................................................................................................................................................2511.00101000000000000000
.......................................................................................................................................................................................................TTTTCTGTGGCAAATCTGAGCTTGG.........................................................................................................................................................................................2511.00101000000000000000
.......................................................................................................................................................................CTTACATGACTGAGTACTCGTCCA..........................................................................................................................................................................................................................2411.00100100000000000000
.......................................................................................................................................................................CTTACATGACTGAGTACTCGT.............................................................................................................................................................................................................................2111.00100010000000000000
droSec2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCACAGAGCTGTGCAGCAGCGAGAATCTGCCCGAGGTGGAGATTTTTTCGCTGCTGSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
No Reads
droYak3
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCACAGAGCTGTGCAGCAGCGAGAATCTGCCCGAGGTGGAGATTTTTTCGCTGCTGSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................AGCGAGAATCTGCCCGAGGTGGAGAT.............2617.00700000000007
................................................................................................................................................................................................................................................................................................................................................................................GCAGCGAGAATCTGCCCGAGGTGGA................2511.00101000000000
.................................................................................................................................................................................................................................................................................................................................................................................CAGCGAGAATCTGCCCGAGGTGGAG...............2511.00100000010000
.....................................................................................................................................................................................................................................................................................................................................................................................GAGAATCTGCCCGAGGTGGAG...............2111.00100000100000
droEre2
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTAATATACT--GATATATG-TTGT---A----------------------------------------ATTT-------TCACAGAGCTATGCAGCAGCGAGAATCTGCCCGAGGTGGAGATTTTTTCGCTGCTGSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................GAATCTGCCCGAGGTGGAGA..............2011.0010000100
.............................................................................................................................................................................................................................................................................................................................................................................................GCCCGAGGTGGAGATTTTTTCGCTGCT.2711.0010001000
..........................................................................................................................................................................................................................................................................................................................................................................TATGCAGCAGCGAGAATCTGCCCGAGG....................2711.0011000000

Generated: 10/20/2015 at 11:04 PM