ID:

dmo_1570

 Coordinate:

scaffold_6500:15679998-15680087 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-4.9 -4.6 -4.4

Flybase annnotation

CDS [Dmoj\GI10322-cds]; exon [dmoj_GLEANR_1026:5]; CDS [Dmoj\GI10322-cds]; exon [dmoj_GLEANR_1026:6]; intron [Dmoj\GI10322-in]

Repeatable elements

NameClassFamilyStrand
TART_DVLINEJockey-
Gypsy8-I_Dpse-intLTRGypsy-
mature
  1. scaffold_6333:5288-5309 -
  2. scaffold_6359:1062259-1062280 -
  3. scaffold_6359:3778778-3778799 -
  4. scaffold_6473:30364-30385 -
  5. dmo_612  scaffold_6473:159776-159797 -
  6. scaffold_6473:1123575-1123596 -
  7. scaffold_6473:4948666-4948687 -
  8. scaffold_6473:9591252-9591273 -
  9. scaffold_6498:857118-857139 -
  10. dmo_1570  scaffold_6500:15680032-15680053 -
  11. scaffold_6500:18593113-18593134 -
  12. scaffold_6540:18047715-18047736 -
  13. scaffold_6540:19825110-19825131 -
  14. scaffold_6540:19831021-19831042 -
  15. scaffold_6540:22077829-22077850 -
  16. scaffold_6540:29046770-29046791 -
  17. scaffold_6680:3465949-3465970 -
  18. scaffold_6680:18353033-18353054 -
  19. dmo_2550  scaffold_6680:20358790-20358811 -
  20. scaffold_6680:20671060-20671081 -
  21. scaffold_6308:2160429-2160450 +
  22. scaffold_6328:755626-755647 +
  23. scaffold_6328:1563164-1563185 +
  24. scaffold_6359:2173516-2173537 +
  25. scaffold_6473:9275580-9275601 +
  26. scaffold_6473:10293266-10293287 +
  27. scaffold_6473:14571444-14571465 +
  28. scaffold_6496:2810576-2810597 +
  29. scaffold_6496:8730204-8730225 +
  30. scaffold_6496:10154850-10154871 +
  31. scaffold_6496:26007493-26007514 +
  32. scaffold_6500:17045286-17045307 +
  33. scaffold_6500:20338181-20338202 +
  34. scaffold_6500:32285641-32285662 +
  35. scaffold_6540:3868780-3868801 +
  36. scaffold_6540:4719243-4719264 +
  37. scaffold_6540:15813310-15813331 +
  38. scaffold_6540:20213859-20213880 +
  39. scaffold_6540:23647535-23647556 +
  40. scaffold_6540:31783127-31783148 +
  41. scaffold_6328:2873605-2873626 +
  42. scaffold_6359:586953-586974 +
  43. scaffold_6473:7134245-7134266 +
  44. scaffold_6473:15007776-15007797 +
  45. scaffold_6496:1208734-1208755 +
  46. scaffold_6496:10920023-10920044 +
  47. scaffold_6496:15079347-15079368 +
  48. scaffold_6500:7129790-7129811 +
  49. scaffold_6500:27938532-27938553 +
  50. scaffold_6540:5500000-5500021 +
  51. scaffold_6540:7631489-7631510 +
  52. scaffold_6540:11139413-11139434 +
  53. scaffold_6540:27735733-27735754 +
  54. scaffold_6540:31990336-31990357 +
  55. scaffold_6680:2453861-2453882 +
  56. scaffold_6680:2663746-2663767 +
  57. scaffold_6680:3374132-3374153 +
  58. dmo_2544  scaffold_6680:19851521-19851542 +
  59. scaffold_6680:20172062-20172083 +
  60. scaffold_6680:22659522-22659543 +
  61. dmo_399  scaffold_6308:134662-134683 -
  62. scaffold_6359:3061865-3061886 -
  63. scaffold_6473:25321-25342 -
  64. scaffold_6473:365423-365444 -
  65. scaffold_6473:2610534-2610555 -
  66. scaffold_6482:815042-815063 -
  67. scaffold_6496:3877589-3877610 -
  68. scaffold_6496:24257776-24257797 -
  69. scaffold_6498:1059185-1059206 -
  70. scaffold_6500:7087455-7087476 -
  71. scaffold_6500:24229433-24229454 -
  72. scaffold_6500:24301704-24301725 -
  73. scaffold_6540:4707008-4707029 -
  74. scaffold_6540:11184441-11184462 -
  75. scaffold_6540:18546554-18546575 -
  76. scaffold_6540:19787619-19787640 -
  77. scaffold_6540:20875886-20875907 -
  78. scaffold_6654:1657927-1657948 -
  79. scaffold_6680:6368172-6368193 -
  80. scaffold_6680:8893055-8893076 -
star

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------##################################################
CAACGCCAGCCATTGTGTCTGCAATAGTCAAAAAGATACCAACGGTGTTGGTATCCCAACAACAGCAGCAGCAACAACAACAACAACAGCAGCAGCAACAGCAACAACAGCAGCAGCAACAACAGCAACAATCGAAGCAGCAAGTGGAGAGCGCCAAGAGTGGAAAGGCCGGCAGCCGATTGCAGCTGCA
**************************************************......................................((.((.((.............)).)).)).......................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V041
embryo
....................................................................................AACAGCAGCAGCAACAGCAACA.................................................................................... 22 0 20 1.05 21 21 0 0
.............................................................................................................................CAACAATCGAAGCAGCAAGTG............................................ 21 0 1 1.00 1 1 0 0
....................................................................................AACAGCAGCAGCAACAGCAAC..................................................................................... 21 0 20 0.30 6 0 6 0
..................................GATAAAACCGGTGTTGGTAT........................................................................................................................................ 20 3 6 0.17 1 1 0 0
..................................................................................ACAACAGCAGCAGCAACAGCA....................................................................................... 21 0 20 0.05 1 1 0 0
................................................................................................AACAGCAACAACAGCAGCAGC......................................................................... 21 0 20 0.05 1 0 1 0
.........................................................................ACAACAACAACAACAGCAGCAGC.............................................................................................. 23 0 20 0.05 1 1 0 0
.............................................................ACAGCAGCAGCAACAACAAC............................................................................................................. 20 0 20 0.05 1 1 0 0
.................................................................................................ACAGCAACAACAGCAGCAGCAACA..................................................................... 24 0 20 0.05 1 0 0 1
......................................................................................................AACAACAGCAGCAGCAACAACAGC................................................................ 24 0 20 0.05 1 0 1 0

Anti-sense strand reads

GTTGCGGTCGGTAACACAGACGTTATCAGTTTTTCTATGGTTGCCACAACCATAGGGTTGTTGTCGTCGTCGTTGTTGTTGTTGTTGTCGTCGTCGTTGTCGTTGTTGTCGTCGTCGTTGTTGTCGTTGTTAGCTTCGTCGTTCACCTCTCGCGGTTCTCACCTTTCCGGCCGTCGGCTAACGTCGACGT
**************************************************......................................((.((.((.............)).)).)).......................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V110
male body		 V056
head
 M060
embryo
..................................................................................................................................TGGCTTCGTCGTTCACGTGTC....................................... 21 3 4 0.50 2 1 1 0 0
..............................TTTTCTATGGCTGACACTAC............................................................................................................................................ 20 3 5 0.20 1 0 0 1 0
........AGGGAACACAGAGGTTATC................................................................................................................................................................... 19 3 12 0.08 1 1 0 0 0
.........................................................TTGTTGTCGTCGTCGTTGT.................................................................................................................. 19 0 20 0.05 1 0 1 0 0
..............................................................GTCGTCGTCGTTGTTGTTGTTGTTGT...................................................................................................... 26 0 20 0.05 1 1 0 0 0
...............................................................TCGTCGTCGTTGTTGTTGTT........................................................................................................... 20 0 20 0.05 1 0 0 0 1
........................................................GTTGTTGTCGTCGTCGTTGTTG................................................................................................................ 22 0 20 0.05 1 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6500:15679948-15680137 - dmo_1570 CAACGCCAGCCATTGTG----T------CTG--------------------CAATAGTCAAAAAGATACCAACG-GTGTT----GGTATCC------------CAACAACAG-------------------------------------------------------------------------------------CAGCAGCAACAACAACAACAACAGCAGCAG------CAACAGCAAC---------A------------ACAGCAGCAG---C--AAC----------------------AA-----------------------CAGCAAC------------------------------AATCGA-----AGC---A---GCA-----------A---GTGGA-----GAGCGCCAA-----------GAGTGGAAAGGCCGGCAGCCGATT----------------------------GCAGCTGCA
droVir3 scaffold_12723:2494333-2494489 - CAACGCCAGCAATTGTA----T------CTG--------------------CAATAGTCAAAAAGATACCCACA-GTGTT----GGTGTCCCAGCAGCAACAAC----------------AACAACAACAACAG------------------------------CAGCAGCAG------------------------------------------------------------C-----------------------------------------------------------------------------------------------------AAC------------------------------AACCTA-----AGC---A---A-----------GGA---GTAGA-----GAGCGCAAA-----------AAACGGAAAAGCCGGCGCCCGATT----------------------------GCAATTGCA
droGri2 scaffold_15126:7460077-7460263 + CAACGCCAGCGATTGTG----T------CCG--------------------CAATAGTCAAGAAGATACCCACA-GTTCT----AGTGTCCCAACAGCAGCAAC----------------AGCAACAGCAACAG------------------------------CAGCAGCAGCA---------------------------------------------------G------C------AAC---------A------------GCAGCAACAA---C--AAC----------------------AA-----------------------CAGCAAC------------------------------AGCCTA-----AGCAACA--------------ACAA---GTGGA-----GAGTGCAAA-----------GAGCGGAAAAGCTGCCAATCGAAT----------------------------GCAGCTGCA
droWil2 scf2_1100000004968:2076211-2076404 + CAACAACAACAGCAGCA----G------CAA--------------------CAACAGCAACAGCAACAACAACT-GCAGC----AGCAA--------------CAACAACAG-------------------------------------------------------------------------------------CAGCAGCAACAACAGCATCAGCAACAGCAA------CAGCAGCAAC---------AATG---------GCAGC---AG---------CAACAACAGCAACATCAACTGC-------------------------------------------------------------------------AGC---A---GCA-----------ACAG-C---AACAGCAGCA---ACA--------ATGGCAGCAACAACAAC-AGCGACA----------------------------ACAACTGCA
dp5 XL_group1e:4085820-4085977 - CTGC--CGGCCTCCAC---------------------------CAAGATCG---------AGATATGCCAGGCG-CCGGC----CC------AACAACACCA----------------CCAGCAGCAGCAGCAG------------------------------CAGCACC---A---------------------------------GCAACAACAGCAGCAGCAG------CAACAGCAGC---------A------------A------CAG---C--ATC----------------------AC-----------------------CAGCAGC------------------------------A--------------------------------------------------------A-----------CAGCAGCAGCACCACC-AGCAGCA----------------------------GCAGCAGCA
droPer2 scaffold_77:81214-81401 + CAACACCAACATCAGCT----T------CAA--------------------CAACAGCATCAACAACACCAACA-GCAAC----AGCAG--------------CAGCAACAC-------------------------------------------------------------------------------------CA---------ACAACACCAACAGCAGCAG------CAACAGCAAC---------A------------CCACCAGCAC---CAG---CAACAGCT---------TCATCATCATCATCAGC--AGCAGCAACAGCAGCAGCAACAACGTGTTGCAAGCAGTA-----------------------------------------------------------------------------------------------GCCTGCA----------------------------ACACCAGCA
droAna3 scaffold_13117:5219666-5219865 - CAACAGCAGCAACTCCA----G------CAG------CAG-----------CAGCAGCCACAGCAACAGCAACA-GCAGC----AGCCA-----------------CACCATCAACAG----------------CAGCAGACATCCCAGCAAC------------AGCAGCAGCA---------------------------------TCAAGCACAACA---------------A---CAAC---------A------------TCAGCAGCAG---C------------AGCAATCACAACAACATAAGCAGCAAC--A--------------------------------------------------------GCAGC------------------------------------AGCACCAG-----------CAGCAGCAACATCTTC-AGCAGAA----------------------------GCAGCAACA
droBip1 scf7180000396640:1106637-1106795 + CAATGCCAGCCAC--CA----G------CAG--------------------CAACAGCAGCAGCAACAGCAACA-GCAAC----AG------------------------------------------------------------------------------CAGCA---------------------------------------ACAGCAACAGCAGCAGCAA------CAACAGCAACACTCCCAACC---------GCAA---------------------------------------CATCAGCATCA-----------------------------------------------------ACAGC-----AGC---------------------------------------A---ACATGTGGCCCATGGCAAAAAGGCGGCC---AGAAA----------------------------GCACCTGCA
droKik1 scf7180000301815:34414-34613 + CAGCGCCAGCAATGGCG----G------ATCCACCAG------CACAAACC---------AGCCCAGTCCCACC-TCGCC----GCAGTCCCA------CCT----------------CCAGCAACAGCAAC---------------------------------------------------------------------AGCAGCAGCAACAATTACA------G------CAACACCCGC---------A------------GCTGCAGCAG---C--AAC----------------------AT-----------------------CAGCAGC------------------------------AGCCGAATGCGAGC---AGCTCCTCGGGAGCCTCGA---------------------G-----------CGGAGCGGGCAGCAGC-AGCGATA----------------------------CCATTAGCA
droFic1 scf7180000453807:186503-186679 + ----GCCAGCCACTGCC----AATGCAGCTG------------CA------CATCATCAATATTATCGCTACCA-CAAGC----AACAC--CAGCAGCAGCAAC----------------AGCAACAACAGCAA------------------------------CAGCAGCAGCAACTACAGCAGCAACAACAGAGCTGCCTGCGACAGCAGCAAA------------------------------------------------------------------------------------------------GACAAT--T--------------------------------------------------------------------------------------------------------G-----------CAGTGGGAACAGCAAC-AGCAACA----------------------------TCAGCAGCA
droEle1 scf7180000491006:114831-115019 - CAGCAACAACAACGGTA----G--T---GAA--------------------CAGGAGCAACAACAATAGCAACA-ACAGC----AGCAT--------------CAACAACAA-------------------------------------------------------------------------------------CAGCAGCAGCAGGAGCAACAACATGAGCAA------CAACTGCACC---------AGCAGGAGCAACAACATC---AGCAACAA---CAGCAGCA---------ACAACATGAGCAACAAC--A--------------------------------------------------------------------------------------------------------G-----------CAGCAACAACAGCAGC-AACAACA----------------------------GCAGCAACA
droRho1 scf7180000779677:10284-10463 - G--------CCATTGTTGCAGG------AGTTACTAG------GCCAAACT------GTGCCAAATTGGCAGGC-ACAGCAGAAGC------AACAACAGCA----------------GCAGCAACAACAGCAACAG---------------------------CAGC------A---------------------------------ACAACCAAAACAGCAGCAA------CAACAGCAGC---------A------------ACAACGGCAG---C--AAC----------------------AA-----------------------CAGCAG--------------------------------------------------------------------------------------CAA-----------CAGCAGCAACAACAGC-AGCAATA----------------------------CCAGCAGCA
droBia1 scf7180000302113:2271418-2271614 + CAACACCAGCAACTGTA----G------GAG--------------------CAACATCAGCAACAGCAACAACA-ACAAC----TGTAG--------------CAGCAACAG-------------------------------------------------------------------------------------CAGCAGCAACACCAACAACTGTAGGAGCAA------CATCAGCAAC---------AGCAACAACAACAACTGT---AGCAGCAA---CAGCAGCAGCGATATCAACAAC--------------T--------------------------------------------------------GTAGC------------------------------------AGCAACAG-----------CAGCAGCGATATCAAC-AACTGTA----------------------------GCAGCAGCA
droTak1 scf7180000413903:59460-59636 + CAACAACAGCAACAGCA----G------CAG--------------------CAGCAACAACA----CACCCAACGGTG-----CGC------AGCAGCAGCAGC----------------AGCAACATCAGC------------------------------------------------------------------------------------AGCAGCAGCAG------CAACATCATC---------A------------GCAGCAGCAG---C--ATC----------------------AC-----------------------CAGCAGCAACGGGTTGTTGCCAGCAGCAACCAGCA-----------------------------------------------------------A-----------CAACAGCAGCTGCAGC-AGCAACA----------------------------GCAACAGCA
droEug1 scf7180000409524:878740-878934 + CAACGTCAGCGATCGCA----T------CAC------CGAGAG--------CATCATCG-AGAACATCACCACA---GTC----AGTCT-----------------CATCATCACCTG----------------CAACAG------CAACAGCAGCAACAACAGCAGCTACAGAA------------------------------------------------------------TC---AGC---------A------------GCAGCAGCAT---C--AGC----------------------AA-----------------------CTGCAAC------------------------------AGCAAT-----TGCAACA--------------TGCA---GTGGG-----TA-CTCCAA-----------AAATGGT-GCCCCTCCTGCCGATT----------------------------GCACCCACA
dm3 chrX:8949644-8949829 - CAGCAACAGCAACAGCA----G------CAG--------------------CAACAGCAACAGCAACAGCAACA-GCAAC----AGCAA--------------CAGCAACAG-------------------------------------------------------------------------------------CAACAGCAACAGCAACAGCAACA------A------CAGCAGCAAC---------AGCAGCAACAGCAACTCA---AGCAACAA------------------------------------C--A--------------------------------------------------------TCAGC------------------------------------CCGAC-----------------------CAGCAGC-AACTGCAGAAGATCATCACGCTGAAGGATCAGGTGATTGGAGCT
droSim2 3l:9459968-9460151 + CACCACCAACAGCAGCA----G------CAG--------------------CAGCATCAACAGCAACAGCAGCA-GCAAC----AGCAT--------------CAGCAGCAG-------------------------------------------------------------------------------------CAGCAGCAGCAACATCAACAGCA------GCAACATCAACAGCAGC---------AACA------CCAAC------AG--------------------------------------------------------CAGCAAC------------------------------AGC--AACAGAAGC---AGCTCCA-----------GCAG-C---AGCA--G-CAGCAT-----------CAATGG----AGCGGC-AACAACG----------------------------GCAGCAGCA
droSec2 scaffold_34:421742-421917 + CAGCAACAGCAGCAGCA----G------GTG--------------------CAACAGCAACAACATCAGCACCA-GCACCAGGTGC------AACAGCAACA----------------GCAGCATCAGCAGC---------------------------------AGCAGCAGCA---------------------------------GCAACAGCAACA------A------------CAAC---------A------------ACAACAGCAA---C------------------------AACAACAACAA-----------------------------------------------CAACAACAAC--AACAGGTGC------------------------------------AGCAC-----------------------CAACAGC-AGCAGCA----------------------------AAAGCTTCA
droYak3 3R:18798189-18798370 + CAACAGCAGCAACAGCA----G------CAG--------------------CAACAGCAGCAACAACAGCAGCA-GCAGC----AGCAA--------------CAGCAGCAA-------------------------------------------------------------------------------------CATCAGCAACAACAGCAACAACAGCAGCAG------CAACAGCAAC---------AACA---------GCAAA---AGCAGCAA---CAGCAGCA---------------A----------CA----------------------------------------ACAGC--------------A---------GCA-----------ACAG-C---AGCA---------A-----------CAACAGCAACAGCAGC-AACAGCA----------------------------GCAGCAGCA
droEre2 scaffold_4784:3586594-3586772 + CAACAGCAGCAGCAGCA----G------CAA--------------------CAGCAGCAACAG---CAGCAACA-GCAGC----AGCAG--------------CAACAACAG-------------------------------------------------------------------------------------CAACAGCAGCAGCAGCAACAGCAGCAGCAT------CAACAGCAAC---------AGCAGCAACAGCAACAGC---AGCAGC---------------------------AG----------TT----------------------------------------GCAGCC-----------------------ACA-----------ACAG-C---AGCT---------G-----------CAGCCGCAACAGCAGC-AGCAGTT----------------------------ACAGCTGCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
CAACGCCAGCCATTGTG----T------CTG--------------------CAATAGTCAAAAAGATACCAACG-GTGTT----GGTATCC------------CAACAACAG-------------------------------------------------------------------------------------CAGCAGCAACAACAACAACAACAGCAGCAG------CAACAGCAAC---------A------------ACAGCAGCAG---C--AAC----------------------AA-----------------------CAGCAAC------------------------------AATCGA-----AGC---A---GCA-----------A---GTGGA-----GAGCGCCAA-----------GAGTGGAAAGGCCGGCAGCCGATT----------------------------GCAGCTGCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........................................................................................................................................................................................................................AACAGCAGCAG------CAACAGCAAC---------A------------.........................................................................................................................................................................................................................................22201.05212100000
..............................................................................................................................................................................................................................................................................................................................................CAAC------------------------------AATCGA-----AGC---A---GCA-----------A---GTG........................................................................................2111.001100000
........................................................................................................................................................................................................................AACAGCAGCAG------CAACAGCAAC---------......................................................................................................................................................................................................................................................21200.306000060
......................................................................................................................................................................................................................ACAACAGCAGCAG------CAACAGCA.................................................................................................................................................................................................................................................................21200.051100000
..........................................................................................................................................................................................................................................AACAGCAAC---------A------------ACAGCAGCAG---C--.........................................................................................................................................................................................................................21200.051000010
.............................................................................................................................................................................................................ACAACAACAACAACAGCAGCAG------C........................................................................................................................................................................................................................................................................23200.051100000
............................................................................................................ACAG-------------------------------------------------------------------------------------CAGCAGCAACAACAAC.............................................................................................................................................................................................................................................................................................20200.051100000
...........................................................................................................................................................................................................................................ACAGCAAC---------A------------ACAGCAGCAG---C--AAC----------------------A...............................................................................................................................................................................................24200.051010000
................................................................................................................................................................................................................................................AAC---------A------------ACAGCAGCAG---C--AAC----------------------AA-----------------------CAGC...................................................................................................................................................................24200.051000010
droVir3
CAACGCCAGCAATTGTA----T------CTG--------------------CAATAGTCAAAAAGATACCCACA-GTGTT----GGTGTCCCAGCAGCAACAAC----------------AACAACAACAACAG------------------------------CAGCAGCAG------------------------------------------------------------C-----------------------------------------------------------------------------------------------------AAC------------------------------AACCTA-----AGC---A---A-----------GGA---GTAGA-----GAGCGCAAA-----------AAACGGAAAAGCCGGCGCCCGATT----------------------------GCAATTGCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................AGC---A---A-----------GGA---GTAGA-----GAGCGCA..........................................................................2011.001000000000000000000000000000000000000010000000000000000000000000
...................................................................ACCCACA-GTGTT----GGTGTCCCAGCAGCAA..............................................................................................................................................................................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................C------------------------------AACCTA-----AGC---A---A-----------GGA---GTAGA-----GAGCGCAAA-----------.............................................................2911.001000000000000000000000000000000000000000000000000000000000000010
.....................................................................................................................................................................................................................................................................................................................................................................................A-----AGC---A---A-----------GGA---GTAGA-----GAGCGCAAA-----------AAAC.........................................................2711.001100000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................C---A---A-----------GGA---GTAGA-----GAGCGCAAA-----------AAACGGA......................................................2711.001100000000000000000000000000000000000000000000000000000000000000
.............................................................AAAGATACCCACA-GTGTT----GGTGTCCC......................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000001000000000000000000000000000000000000
.............................................................................................GCAGCAACAAC----------------AACAACAACAACAG------------------------------C.............................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000001000000000000000000000000000000000000
...........................................................................................................................AACAACAACAG------------------------------CAGCAGCAG------------------------------------------------------------C-----------------------------------------------------------------------------------------------------AAC------------------------------AAC...............................................................................................................................27200.051001000000000000000000000000000000000000000000000000000000000000
...............................................................................................AGCAACAAC----------------AACAACAACAA...............................................................................................................................................................................................................................................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
............................................................................................AGCAGCAACAAC----------------AACAACAACA................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000100000000000000000000000000000000000000
..........................................................................................................................CAACAACAACAG------------------------------CAGCAGCAG------------------------------------------------------------C-----------------------------------------------------------------------------------------------------A..................................................................................................................................................................23200.051000000000000001000000000000000000000000000000000000000000000000
.........................................................................................................................ACAACAACAACAG------------------------------CAGCAGCAG------------------------------------------------------------.........................................................................................................................................................................................................................................................................22200.051000000000000000000000010000000000000000000000000000000000000000
.......................................................................................................C----------------AACAACAACAACAG------------------------------CAGCAG........................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000000000000100000000000000000000000
droGri2
CAACGCCAGCGATTGTG----T------CCG--------------------CAATAGTCAAGAAGATACCCACA-GTTCT----AGTGTCCCAACAGCAGCAAC----------------AGCAACAGCAACAG------------------------------CAGCAGCAGCA---------------------------------------------------G------C------AAC---------A------------GCAGCAACAA---C--AAC----------------------AA-----------------------CAGCAAC------------------------------AGCCTA-----AGCAACA--------------ACAA---GTGGA-----GAGTGCAAA-----------GAGCGGAAAAGCTGCCAATCGAAT----------------------------GCAGCTGCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.............................................................GAAGATACCCACA-GTTCT----AGTGTCCCA.....................................................................................................................................................................................................................................................................................................................................................................................................................2711.00110
................................................................................................................................CAACAG------------------------------CAGCAGCAGCA---------------------------------------------------G------C------A.................................................................................................................................................................................................................................................................20200.10202
droWil2
CAACAACAACAGCAGCA----G------CAA--------------------CAACAGCAACAGCAACAACAACT-GCAGC----AGCAA--------------CAACAACAG-------------------------------------------------------------------------------------CAGCAGCAACAACAGCATCAGCAACAGCAA------CAGCAGCAAC---------AATG---------GCAGC---AG---------CAACAACAGCAACATCAACTGC-------------------------------------------------------------------------AGC---A---GCA-----------ACAG-C---AACAGCAGCA---ACA--------ATGGCAGCAACAACAAC-AGCGACA----------------------------ACAACTGCASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................A---ACA--------ATGGCAGCAACAACAAC-AG..........................................23200.7014014000
.............................................................................AGC----AGCAA--------------CAACAACAG-------------------------------------------------------------------------------------CA...........................................................................................................................................................................................................................................................................................................19200.20400040
.........................................................................................................ACAACAG-------------------------------------------------------------------------------------CAGCAGCAACA..................................................................................................................................................................................................................................................................................................18200.20400040
......................................................................................................................................................................................................................TCAGCAACAGCAA------CAGCAGCAAC---------AAT...................................................................................................................................................................................................................................................2660.17101000
............................................................................................................ACAG-------------------------------------------------------------------------------------CAGCAGCAACAACAGC.............................................................................................................................................................................................................................................................................................20200.15300030
.....................................................................................................................................................................................................................................................................................................................................................................................................................................A---ACA--------ATGGCAGCAACAACAAC-AGC.........................................24200.15302010
.......................................................................................................................................................................................................................................................................................................................................................................................................A-----------ACAG-C---AACAGCAGCA---ACA--------ATGG..........................................................23200.10202000
CAACAACAACAGCAGCA----G------CAA--------------------CA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.10200011
CAACAACAACAGCAGCA----G------CA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.10200020
...........................................................................................................................................................................................................................AACAGCAA------CAGCAGCAAC---------AATG---------G........................................................................................................................................................................................................................................23200.10202000
CAACAACAACAGCAGCA----G------CAA--------------------C..............................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.10200020
...........................................................................................................................................................................................................................AACAGCAA------CAGCAGCAAC---------AATG---------GC.......................................................................................................................................................................................................................................24200.10202000
.......................................................................................................................................................................................................................................................................................................................................................................................................A-----------ACAG-C---AACAGCAGCA---ACA--------ATGGC.........................................................24200.10202000
......................................................................................................................................................................................................................TCAGCAACAGCAA------CAGCAGCAAC---------A.....................................................................................................................................................................................................................................................24100.10100010
...................................................................................................................................................................................................................................................................................................................................................................................................................ACAG-C---AACAGCAGCA---ACA--------..............................................................18200.10200020
..............................................................................................................................................................................................................CAACAGCATCAGCAACAGCAA------CAGCAG...................................................................................................................................................................................................................................................................27120.08100010
...........................................................................................................................................................................................................CAACAACAGCATCAGCAACAGCAA------CAG......................................................................................................................................................................................................................................................................27120.08101000
..........................................................................................................CAACAG-------------------------------------------------------------------------------------CAGCAGCAACAACAGCATCAG........................................................................................................................................................................................................................................................................................27120.08100010
...........................................................................................................................................................................................................CAACAACAGCATCAGCAACAGC.................................................................................................................................................................................................................................................................................22140.07100010
...................................................................AACAACT-GCAGC----AGCAA--------------CAACAACA...................................................................................................................................................................................................................................................................................................................................................................................................25150.07101000
..............................................................................................................................................................................................................CAACAGCATCAGCAACAGC.................................................................................................................................................................................................................................................................................19170.06100010
..................................................................................................................................................................................................................AGCATCAGCAACAGCAA------CAGCAG...................................................................................................................................................................................................................................................................23170.06101000
.....................................................................................................................................................................................................................ATCAGCAACAGCAA------CAGCAGCAAC---------......................................................................................................................................................................................................................................................24190.05101000
...............................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCA---ACA--------ATGGCAGCAACAACA...............................................25200.05101000
..........AGCAGCA----G------CAA--------------------CAACAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100010
....................................................................................................................................................................................................................CATCAGCAACAGCAA------CAGCA....................................................................................................................................................................................................................................................................20200.05100010
......................................................................................................................................................................................................................................................................................................................................................................................................CA-----------ACAG-C---AACAGCAGCA---AC.......................................................................19200.05100010
..........AGCAGCA----G------CAA--------------------CAACAGCAACAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100001
...CAACAACAGCAGCA----G------CAA--------------------CAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000
.............................................................AGCAACAACAACT-GCAGC----AGCAA--------------CA.........................................................................................................................................................................................................................................................................................................................................................................................................25200.05100010
.......AACAGCAGCA----G------CAA--------------------CAACAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05101000
...........................................................................GCAGC----AGCAA--------------CAACAACAG-------------------------------------------------------------------------------------CAGCAG.......................................................................................................................................................................................................................................................................................................25200.05100010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................ACA--------ATGGCAGCAACAACAAC-AG..........................................22200.05101000
.....................................................................................................................................................................................................................................................................................................................................................................................................................AG-C---AACAGCAGCA---ACA--------ATGG..........................................................20200.05101000
....................................................................................................................................................................................................................................................................................................................................................................................................................................CA---ACA--------ATGGCAGCAACAACAAC-AG..........................................24200.05100010
....................................................................................AGCAA--------------CAACAACAG-------------------------------------------------------------------------------------CAGCAGCAACA..................................................................................................................................................................................................................................................................................................25200.05100010
...........................................................ACAGCAACAACAACT-GCAGC----A.............................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000
..........................................................AACAGCAACAACAACT-GCAGC----AGC...........................................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000
..........................................................AACAGCAACAACAACT-GCAGC----AGCAA--------------C..........................................................................................................................................................................................................................................................................................................................................................................................................27200.05101000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................A--------ATGGCAGCAACAACAAC-AGC.........................................21200.05101000
..............................................................................................................................................................................................................................AGCAA------CAGCAGCAAC---------AATG---------G........................................................................................................................................................................................................................................20200.05101000
.............................................................AGCAACAACAACT-GCAGC----AGCAA--------------...........................................................................................................................................................................................................................................................................................................................................................................................................23200.05101000
..........AGCAGCA----G------CAA--------------------CAACAGCAACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05100010
.....ACAACAGCAGCA----G------CAA--------------------CAACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000
...........GCAGCA----G------CAA--------------------CAACAGCAACAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100010
...........................................................................................................AACAG-------------------------------------------------------------------------------------CAGCAGCAACAACAGCA............................................................................................................................................................................................................................................................................................22200.05101000
.........................................................CAACAGCAACAACAACT-GCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000
....................................................................................................................................................................................................................................................................................................................................................................................................................................CA---ACA--------ATGGCAGCAACAACAAC-AGC.........................................25200.05101000
..........................................................................................................................................................................................................................CAACAGCAA------CAGCAGCAAC---------AATG---------GC.......................................................................................................................................................................................................................................25200.05101000
.........................................................................................................ACAACAG-------------------------------------------------------------------------------------CAGCAGCAACAA.................................................................................................................................................................................................................................................................................................19200.05100010
.....................................................................................................................................................................................................................ATCAGCAACAGCAA------CAGCAGC..................................................................................................................................................................................................................................................................21200.05101000
................................................................AACAACAACT-GCAGC----AGCAA--------------CA.........................................................................................................................................................................................................................................................................................................................................................................................................22200.05101000
......................................................................................................................................................................................................................................................................................................................................................................................................CA-----------ACAG-C---AACAGCAGCA---ACA--------ATGGC.........................................................25200.05101000
.AACAACAACAGCAGCA----G------CAA--------------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100100
....AACAACAGCAGCA----G------CAA--------------------CAACAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100010
........................................................................................................AACAACAG-------------------------------------------------------------------------------------CAGCAGCAACAACAGCA............................................................................................................................................................................................................................................................................................25200.05100010
dp5
CTGC--CGGCCTCCAC---------------------------CAAGATCG---------AGATATGCCAGGCG-CCGGC----CC------AACAACACCA----------------CCAGCAGCAGCAGCAG------------------------------CAGCACC---A---------------------------------GCAACAACAGCAGCAGCAG------CAACAGCAGC---------A------------A------CAG---C--ATC----------------------AC-----------------------CAGCAGC------------------------------A--------------------------------------------------------A-----------CAGCAGCAGCACCACC-AGCAGCA----------------------------GCAGCAGCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................G---------AGATATGCCAGGCG-CCGGC----CC------AACA..................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100000
..............................................................................................................................................................................................................................................................................................................................................CAGC------------------------------A--------------------------------------------------------A-----------CAGCAGCAGCACCACC-AG..........................................2420.5010000100000
................................................................................................................................................................................................................................................AGC---------A------------A------CAG---C--ATC----------------------AC-----------------------CAGCAG.................................................................................................................................................................2030.3310000100000
..............................................................................................................................................................................A---------------------------------GCAACAACAGCAGCAGCAG------C........................................................................................................................................................................................................................................................................21200.2040400000000
.........................................................................................................................................................................................................................GCAGCAGCAG------CAACAGCAGC---------A------------.........................................................................................................................................................................................................................................21200.2040400000000
...............................................................................................AACACCA----------------CCAGCAGCAGCAGCA.............................................................................................................................................................................................................................................................................................................................................................................2270.1410100000000
........................................................................................................................................................................................................................AGCAGCAGCAG------CAACAGCA.................................................................................................................................................................................................................................................................19200.0510100000000
........................................................................................................................................................................................................................AGCAGCAGCAG------CAACAGCAGC---------......................................................................................................................................................................................................................................................21200.0510010000000
..........................................................................................................................................................................C---A---------------------------------GCAACAACAGCAGCAGCAG------CA.......................................................................................................................................................................................................................................................................23200.0510000001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCACCACC-AGCAGCA----------------------------GCAG.....21200.0510000000010
............................................................................................................................................................................................................................GCAGCAG------CAACAGCAGC---------A------------A------C.................................................................................................................................................................................................................................20200.0510000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCACC-AGCAGCA----------------------------GCAGCAG..22200.0510000000010
......................................................................................................................CCAGCAGCAGCAGCAG------------------------------CAGCACC---....................................................................................................................................................................................................................................................................................................................................23200.0510001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCACCACC-AGCAGCA----------------------------G........20200.0510001000000
droPer2
CAACACCAACATCAGCT----T------CAA--------------------CAACAGCATCAACAACACCAACA-GCAAC----AGCAG--------------CAGCAACAC-------------------------------------------------------------------------------------CA---------ACAACACCAACAGCAGCAG------CAACAGCAAC---------A------------CCACCAGCAC---CAG---CAACAGCT---------TCATCATCATCATCAGC--AGCAGCAACAGCAGCAGCAACAACGTGTTGCAAGCAGTA-----------------------------------------------------------------------------------------------GCCTGCA----------------------------ACACCAGCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................................................................................................................................................................................................................................AACAGCAAC---------A------------CCACCAGCAC---C...........................................................................................................................................................................................................................2111.001001000
..........................................................ATCAACAACACCAACA-GCAAC----AGCAG--------------C..........................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
...............................................................CAACACCAACA-GCAAC----AGCAG--------------C..........................................................................................................................................................................................................................................................................................................................................................................................................22200.051010000
..............................................................ACAACACCAACA-GCAAC----AGCAG--------------C..........................................................................................................................................................................................................................................................................................................................................................................................................23200.051010000
droAna3
CAACAGCAGCAACTCCA----G------CAG------CAG-----------CAGCAGCCACAGCAACAGCAACA-GCAGC----AGCCA-----------------CACCATCAACAG----------------CAGCAGACATCCCAGCAAC------------AGCAGCAGCA---------------------------------TCAAGCACAACA---------------A---CAAC---------A------------TCAGCAGCAG---C------------AGCAATCACAACAACATAAGCAGCAAC--A--------------------------------------------------------GCAGC------------------------------------AGCACCAG-----------CAGCAGCAACATCTTC-AGCAGAA----------------------------GCAGCAACASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........GCAACTCCA----G------CAG------CAG-----------CA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................18100.202200000
............................................................................................................................................................................................................................................................................................................................AC--A--------------------------------------------------------GCAGC------------------------------------AGCACCAG-----------CAGCA........................................................2170.141100000
.......AGCAACTCCA----G------CAG------CAG-----------CA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................1970.141100000
..........AACTCCA----G------CAG------CAG-----------CAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................19100.101000100
...........ACTCCA----G------CAG------CAG-----------CAGCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................20110.091000001
...........................................................................................................................................................................................................................A---------------A---CAAC---------A------------TCAGCAGCAG---C------------...............................................................................................................................................................................................................18130.081010000
...............................................................CAACAGCAACA-GCAGC----AGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................20130.081010000
..................................................................................................................................................CAGCAAC------------AGCAGCAGCA---------------------------------TCA...............................................................................................................................................................................................................................................................................................20160.061100000
...................................................................................................................................................AGCAAC------------AGCAGCAGCA---------------------------------TCA...............................................................................................................................................................................................................................................................................................19170.061000001
....................................................................................................................................................GCAAC------------AGCAGCAGCA---------------------------------TCA...............................................................................................................................................................................................................................................................................................18200.051000001
..................................................................................................................................................CAGCAAC------------AGCAGCAGCA---------------------------------TC................................................................................................................................................................................................................................................................................................19200.051000001
droBip1
CAATGCCAGCCAC--CA----G------CAG--------------------CAACAGCAGCAGCAACAGCAACA-GCAAC----AG------------------------------------------------------------------------------CAGCA---------------------------------------ACAGCAACAGCAGCAGCAA------CAACAGCAACACTCCCAACC---------GCAA---------------------------------------CATCAGCATCA-----------------------------------------------------ACAGC-----AGC---------------------------------------A---ACATGTGGCCCATGGCAAAAAGGCGGCC---AGAAA----------------------------GCACCTGCASizeHit CountTotal NormTotal
No Reads
droKik1
CAGCGCCAGCAATGGCG----G------ATCCACCAG------CACAAACC---------AGCCCAGTCCCACC-TCGCC----GCAGTCCCA------CCT----------------CCAGCAACAGCAAC---------------------------------------------------------------------AGCAGCAGCAACAATTACA------G------CAACACCCGC---------A------------GCTGCAGCAG---C--AAC----------------------AT-----------------------CAGCAGC------------------------------AGCCGAATGCGAGC---AGCTCCTCGGGAGCCTCGA---------------------G-----------CGGAGCGGGCAGCAGC-AGCGATA----------------------------CCATTAGCASizeHit CountTotal NormTotal
No Reads
droFic1
----GCCAGCCACTGCC----AATGCAGCTG------------CA------CATCATCAATATTATCGCTACCA-CAAGC----AACAC--CAGCAGCAGCAAC----------------AGCAACAACAGCAA------------------------------CAGCAGCAGCAACTACAGCAGCAACAACAGAGCTGCCTGCGACAGCAGCAAA------------------------------------------------------------------------------------------------GACAAT--T--------------------------------------------------------------------------------------------------------G-----------CAGTGGGAACAGCAAC-AGCAACA----------------------------TCAGCAGCASizeHit CountTotal NormTotal
No Reads
droEle1
CAGCAACAACAACGGTA----G--T---GAA--------------------CAGGAGCAACAACAATAGCAACA-ACAGC----AGCAT--------------CAACAACAA-------------------------------------------------------------------------------------CAGCAGCAGCAGGAGCAACAACATGAGCAA------CAACTGCACC---------AGCAGGAGCAACAACATC---AGCAACAA---CAGCAGCA---------ACAACATGAGCAACAAC--A--------------------------------------------------------------------------------------------------------G-----------CAGCAACAACAGCAGC-AACAACA----------------------------GCAGCAACASizeHit CountTotal NormTotal
No Reads
droRho1
G--------CCATTGTTGCAGG------AGTTACTAG------GCCAAACT------GTGCCAAATTGGCAGGC-ACAGCAGAAGC------AACAACAGCA----------------GCAGCAACAACAGCAACAG---------------------------CAGC------A---------------------------------ACAACCAAAACAGCAGCAA------CAACAGCAGC---------A------------ACAACGGCAG---C--AAC----------------------AA-----------------------CAGCAG--------------------------------------------------------------------------------------CAA-----------CAGCAGCAACAACAGC-AGCAATA----------------------------CCAGCAGCASizeHit CountTotal NormTotal
No Reads
droBia1
CAACACCAGCAACTGTA----G------GAG--------------------CAACATCAGCAACAGCAACAACA-ACAAC----TGTAG--------------CAGCAACAG-------------------------------------------------------------------------------------CAGCAGCAACACCAACAACTGTAGGAGCAA------CATCAGCAAC---------AGCAACAACAACAACTGT---AGCAGCAA---CAGCAGCAGCGATATCAACAAC--------------T--------------------------------------------------------GTAGC------------------------------------AGCAACAG-----------CAGCAGCGATATCAAC-AACTGTA----------------------------GCAGCAGCASizeHit CountTotal NormTotal
No Reads
droTak1
CAACAACAGCAACAGCA----G------CAG--------------------CAGCAACAACA----CACCCAACGGTG-----CGC------AGCAGCAGCAGC----------------AGCAACATCAGC------------------------------------------------------------------------------------AGCAGCAGCAG------CAACATCATC---------A------------GCAGCAGCAG---C--ATC----------------------AC-----------------------CAGCAGCAACGGGTTGTTGCCAGCAGCAACCAGCA-----------------------------------------------------------A-----------CAACAGCAGCTGCAGC-AGCAACA----------------------------GCAACAGCASizeHit CountTotal NormTotal
No Reads
droEug1
CAACGTCAGCGATCGCA----T------CAC------CGAGAG--------CATCATCG-AGAACATCACCACA---GTC----AGTCT-----------------CATCATCACCTG----------------CAACAG------CAACAGCAGCAACAACAGCAGCTACAGAA------------------------------------------------------------TC---AGC---------A------------GCAGCAGCAT---C--AGC----------------------AA-----------------------CTGCAAC------------------------------AGCAAT-----TGCAACA--------------TGCA---GTGGG-----TA-CTCCAA-----------AAATGGT-GCCCCTCCTGCCGATT----------------------------GCACCCACASizeHit CountTotal NormTotal
No Reads
dm3
CAGCAACAGCAACAGCA----G------CAG--------------------CAACAGCAACAGCAACAGCAACA-GCAAC----AGCAA--------------CAGCAACAG-------------------------------------------------------------------------------------CAACAGCAACAGCAACAGCAACA------A------CAGCAGCAAC---------AGCAGCAACAGCAACTCA---AGCAACAA------------------------------------C--A--------------------------------------------------------TCAGC------------------------------------CCGAC-----------------------CAGCAGC-AACTGCAGAAGATCATCACGCTGAAGGATCAGGTGATTGGAGCTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................TCAGC------------------------------------CCGAC-----------------------CAGCAGC-AACTGCAGAAGA................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................AC---------AGCAGCAACAGCAACTCA---AGCAACAA------------------------------------C--..................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCACGCTGAAGGATCAG............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCAGAAGATCATCACG........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCATCACGCTGAAGGATCAGGT..........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGCAGAAGATCATCACGCTGAAGGATC..............3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGATCAGGTGATTGG....1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
..........................................................................................................................................................................................................................................AGCAGCAAC---------AGCAGCAACAGCAACT......................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................TCAGC------------------------------------CCGAC-----------------------CAGCAGC-AACTGCAGAA..................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATCACGCTGAAGGATCAGGTGAT.......2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................AC---------AGCAGCAACAGCAACTCA---AGCAACAA------------------------------------C--A--------------------------------------------------------.........................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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droSim2
CACCACCAACAGCAGCA----G------CAG--------------------CAGCATCAACAGCAACAGCAGCA-GCAAC----AGCAT--------------CAGCAGCAG-------------------------------------------------------------------------------------CAGCAGCAGCAACATCAACAGCA------GCAACATCAACAGCAGC---------AACA------CCAAC------AG--------------------------------------------------------CAGCAAC------------------------------AGC--AACAGAAGC---AGCTCCA-----------GCAG-C---AGCA--G-CAGCAT-----------CAATGG----AGCGGC-AACAACG----------------------------GCAGCAGCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGG----AGCGGC-AACAACG----------------------------GCAGT....2211.00100000000000001000
...........................................................................GCAAC----AGCAT--------------CAGCAGCAG-------------------------------------------------------------------------------------CA...........................................................................................................................................................................................................................................................................................................2150.20100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................CTCCA-----------GCAG-C---AGCA--G-CAGC..........................................................................19180.06100000000000100000
........................................................................................................AGCAGCAG-------------------------------------------------------------------------------------CAGCAGCAGC...................................................................................................................................................................................................................................................................................................18200.05100000000001000000
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.............................................................AGCAACAGCAGCA-GCAAC----A.............................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100000000000100000
droSec2
CAGCAACAGCAGCAGCA----G------GTG--------------------CAACAGCAACAACATCAGCACCA-GCACCAGGTGC------AACAGCAACA----------------GCAGCATCAGCAGC---------------------------------AGCAGCAGCA---------------------------------GCAACAGCAACA------A------------CAAC---------A------------ACAACAGCAA---C------------------------AACAACAACAA-----------------------------------------------CAACAACAAC--AACAGGTGC------------------------------------AGCAC-----------------------CAACAGC-AGCAGCA----------------------------AAAGCTTCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................................................................................CAACA----------------GCAGCATCAGCAGC---------------------------------AGCAGC.......................................................................................................................................................................................................................................................................................................................................2540.2511000
............................................................................................................................................................................................................................................................A------------ACAACAGCAA---C------------------------AACAACAACAA-----------------------------------------------CA.......................................................................................................................................2560.1711000
...............................................................................................AGCAACA----------------GCAGCATCAGCA................................................................................................................................................................................................................................................................................................................................................................................1970.1410010
......................................................................................................................GCAGCATCAGCAGC---------------------------------AGCAGCAGC....................................................................................................................................................................................................................................................................................................................................23100.1010010
..................................................................................................AACA----------------GCAGCATCAGCAGC---------------------------------A............................................................................................................................................................................................................................................................................................................................................19140.0710001
...................................................................................................................................................................................................................................................................................................................................................................................................................................GCAC-----------------------CAACAGC-AGCAGCA----------------------------.........18170.0610001
...........................................................................................................................ATCAGCAGC---------------------------------AGCAGCAGCA---------------------------------GCA...............................................................................................................................................................................................................................................................................................22200.0510001
..........................................................................................................................CATCAGCAGC---------------------------------AGCAGCAGCA---------------------------------..................................................................................................................................................................................................................................................................................................20200.0510001
.....................................................................................................................................................................AGCAGCAGCA---------------------------------GCAACAGCA.........................................................................................................................................................................................................................................................................................19200.0510001
......................................................................................................................................................................GCAGCAGCA---------------------------------GCAACAGCAACA------................................................................................................................................................................................................................................................................................21200.0510010
droYak3
CAACAGCAGCAACAGCA----G------CAG--------------------CAACAGCAGCAACAACAGCAGCA-GCAGC----AGCAA--------------CAGCAGCAA-------------------------------------------------------------------------------------CATCAGCAACAACAGCAACAACAGCAGCAG------CAACAGCAAC---------AACA---------GCAAA---AGCAGCAA---CAGCAGCA---------------A----------CA----------------------------------------ACAGC--------------A---------GCA-----------ACAG-C---AGCA---------A-----------CAACAGCAACAGCAGC-AACAGCA----------------------------GCAGCAGCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................................................................................................................................................................................................................................................................AA---AGCAGCAA---CAGCAGCA---------------A----------CA----------------------------------------AC........................................................................................................................................2320.50101000000000
............................................................................................................GCAA-------------------------------------------------------------------------------------CATCAGCAACAACAGCAACA.........................................................................................................................................................................................................................................................................................2440.25101000000000
.......................................................AGCAGCAACAACAGCAGCA-GCAGC----..............................................................................................................................................................................................................................................................................................................................................................................................................................24200.15303000000000
...............................................................CAACAGCAGCA-GCAGC----AGC...........................................................................................................................................................................................................................................................................................................................................................................................................................19200.15303000000000
......................................................................AGCA-GCAGC----AGCAA--------------CAGCA......................................................................................................................................................................................................................................................................................................................................................................................................19200.10202000000000
.................................................................................................................................................................................................................................................................................AGCAGCAA---CAGCAGCA---------------A----------CA----------------------------------------ACAGC--------------A---------GC...........................................................................................................27150.07100100000000
................A----G------CAG--------------------CAACAGCAGCAACAACAGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................27150.07100100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC-AACAGCA----------------------------GCAGCAGCA19200.05101000000000
.........CAACAGCA----G------CAG--------------------CAACAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................A-----------CAACAGCAACAGCAGC-AAC.........................................20200.05100000100000
...........................................................................................................................................................................................................................AGCAGCAG------CAACAGCAAC---------AAC...................................................................................................................................................................................................................................................21200.05101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGC-AACAGCA----------------------------GCAGCAGC.19200.05100010000000
.....................................................................CAGCA-GCAGC----AGCAA--------------CAGCAGC....................................................................................................................................................................................................................................................................................................................................................................................................22200.05100010000000
...................................................CAACAGCAGCAACAACAGCAGCA-.......................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05101000000000
...................................................................................................................................................................................................................................................................................................................A----------CA----------------------------------------ACAGC--------------A---------GCA-----------ACAG-C---AGCA---------.........................................................................21200.05101000000000
...............................................................CAACAGCAGCA-GCAGC----AGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100000100000
......................................................................................................................................................................................................................................................................................CAA---CAGCAGCA---------------A----------CA----------------------------------------ACAGC--------------A---------GCA-----------...............................................................................................23200.05101000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGC-AACAGCA----------------------------GCAGCAG..23200.05101000000000
.AACAGCAGCAACAGCA----G------CA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05101000000000
.................................................................ACAGCAGCA-GCAGC----AGCAA--------------CAGCA......................................................................................................................................................................................................................................................................................................................................................................................................24200.05100100000000
...................................................................AGCAGCA-GCAGC----AGCAA--------------CAGCAGCAA-------------------------------------------------------------------------------------C............................................................................................................................................................................................................................................................................................................27200.05100000000001
.........CAACAGCA----G------CAG--------------------CAACAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05101000000000
..............................................................................................................................................................................................................CAACAGCAACAACAGCAGCA................................................................................................................................................................................................................................................................................20200.05101000000000
....................................................AACAGCAGCAACAACAGCAGCA-GC.....................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000000000
..................................................................................................................................................................................................................AGCAACAACAGCAGCAG------CAACAGC..................................................................................................................................................................................................................................................................24200.05100100000000
..............................................................................................................................................................................................................................................................................................GCAGCA---------------A----------CA----------------------------------------ACAGC--------------A---------GCA-----------ACAG-C---A.....................................................................................24200.05101000000000
...........................................................GCAACAACAGCAGCA-GCAGC----..............................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100100000000
.......................................................................GCA-GCAGC----AGCAA--------------CAGCAGCAA-------------------------------------------------------------------------------------CA...........................................................................................................................................................................................................................................................................................................24200.05101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................GCA---------A-----------CAACAGCAACAGCAGC-............................................20200.05101000000000
.....................................................................CAGCA-GCAGC----AGCAA--------------CAGCAGCAA-------------------------------------------------------------------------------------C............................................................................................................................................................................................................................................................................................................25200.05100000000001
..............GCA----G------CAG--------------------CAACAGCAGCAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100100000000
.................................................................................................................................................................................................................CAGCAACAACAGCAGCAG------CAACAGC..................................................................................................................................................................................................................................................................25200.05100100000000
...................................................................................................................................................................................................................................................................................................A---------------A----------CA----------------------------------------ACAGC--------------A---------GCA-----------ACAG-C---AG....................................................................................20200.05101000000000
......................................................CAGCAGCAACAACAGCAGCA-.......................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05101000000000
...................................................................................................................................................................................................................................................................................................A---------------A----------CA----------------------------------------ACAGC--------------A---------GCA-----------ACAG-C---A.....................................................................................19200.05101000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGC-AACAGCA----------------------------GCAGCAGC.24200.05101000000000
............................................................................................................................................................................................................................................................................................CAGCAGCA---------------A----------CA----------------------------------------ACAGC--------------A---------GCA-----------...............................................................................................20200.05101000000000
...................................................................................................................................................................................................................GCAACAACAGCAGCAG------CAA......................................................................................................................................................................................................................................................................19200.05101000000000
.................................................................................................................................................................................................................CAGCAACAACAGCAGCAG------CA.......................................................................................................................................................................................................................................................................20200.05101000000000
......................................................................AGCA-GCAGC----AGCAA--------------CAGCAGC....................................................................................................................................................................................................................................................................................................................................................................................................21200.05100010000000
droEre2
CAACAGCAGCAGCAGCA----G------CAA--------------------CAGCAGCAACAG---CAGCAACA-GCAGC----AGCAG--------------CAACAACAG-------------------------------------------------------------------------------------CAACAGCAGCAGCAGCAACAGCAGCAGCAT------CAACAGCAAC---------AGCAGCAACAGCAACAGC---AGCAGC---------------------------AG----------TT----------------------------------------GCAGCC-----------------------ACA-----------ACAG-C---AGCT---------G-----------CAGCCGCAACAGCAGC-AGCAGTT----------------------------ACAGCTGCASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCAGC-AGCAGTT----------------------------ACAGCTGCA2711.0011000000
.............................................................................................................................................................................................................................................................................................................................................................................C-----------------------ACA-----------ACAG-C---AGCT---------G-----------CAGCCGCA.....................................................2211.0010000100
..................................................................................................................................................................................................................................................................AACAGCAACAGC---AGCAGC---------------------------AG----------TT----------------------------------------..........................................................................................................................................2220.5010001000
...................................................................................................................................................................................................................................................................ACAGCAACAGC---AGCAGC---------------------------AG----------TT----------------------------------------..........................................................................................................................................2120.5010000010
...........................................................................................................................................................................................................................AGCAGCAT------CAACAGCAAC---------A.....................................................................................................................................................................................................................................................1930.3310000100
..............................................................G---CAGCAACA-GCAGC----AGCAG--------------C..........................................................................................................................................................................................................................................................................................................................................................................................................20200.1531000020
..........................................................AACAG---CAGCAACA-GCAGC----A.............................................................................................................................................................................................................................................................................................................................................................................................................................19200.1020002000
......................................................CAGCAACAG---CAGCAACA-GCAGC----A.............................................................................................................................................................................................................................................................................................................................................................................................................................23200.1021000100
..................................................................................................................................................................................................................................................................AACAGCAACAGC---AGCAGC---------------------------................................................................................................................................................................................................18200.1020000020
.....................................................................................GCAG--------------CAACAACAG-------------------------------------------------------------------------------------CAACAGCAGCA..................................................................................................................................................................................................................................................................................................24120.0810000010
.......................................................................................AG--------------CAACAACAG-------------------------------------------------------------------------------------CAACAGCAGCA..................................................................................................................................................................................................................................................................................................22160.0610000010
.....................................................................................................................................................................................................................................................................AGCAACAGC---AGCAGC---------------------------AG----------T...................................................................................................................................................................................18190.0511000000
........................................................................................G--------------CAACAACAG-------------------------------------------------------------------------------------CAACAGCAGC...................................................................................................................................................................................................................................................................................................20200.0510100000
.................................................................................................................................................................................................................................................AC---------AGCAGCAACAGCAACAGC---.................................................................................................................................................................................................................................20200.0510100000
..........AGCAGCA----G------CAA--------------------CAGCAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510001000
.............................................................................................................................................................................................................GCAGCAGCAACAGCAGCAGC.................................................................................................................................................................................................................................................................................20200.0511000000
..............GCA----G------CAA--------------------CAGCAGCAACAG---CAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000100
.......................................................AGCAACAG---CAGCAACA-GCAGC----AGCAG--------------C..........................................................................................................................................................................................................................................................................................................................................................................................................27200.0511000000
.......................................................AGCAACAG---CAGCAACA-GCA....................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000100
.............................................................................................................................................................................................................................................AGCAAC---------AGCAGCAACAGCA.........................................................................................................................................................................................................................................19200.0510000100
.........................................................................................................ACAACAG-------------------------------------------------------------------------------------CAACAGCAGCAGC................................................................................................................................................................................................................................................................................................20200.0511000000
.......................................................................................................................................................................................................ACAGCAGCAGCAGCAACAGC.......................................................................................................................................................................................................................................................................................20200.0511000000
......................................................................................................................................................................................................AACAGCAGCAGCAGCAACAGCAGC....................................................................................................................................................................................................................................................................................24200.0510000010
.......................................................................................................CAACAACAG-------------------------------------------------------------------------------------CAACAGCAGCA..................................................................................................................................................................................................................................................................................................20200.0510100000
.....................................................................................................................................................................................................CAACAGCAGCAGCAGCAACAGCA......................................................................................................................................................................................................................................................................................23200.0510000010
....AGCAGCAGCAGCA----G------CAA--------------------CAGCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510100000
..............................................................G---CAGCAACA-GCAGC----AGCAG--------------CAA........................................................................................................................................................................................................................................................................................................................................................................................................22200.0511000000
......................................................................................................................................................................................................AACAGCAGCAGCAGCAACAGCAGCA...................................................................................................................................................................................................................................................................................25200.0510001000
....................................................................GCAACA-GCAGC----AGCAG--------------CAACA......................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000010
........GCAGCAGCA----G------CAA--------------------CAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0511000000
.............................................................................................................CAG-------------------------------------------------------------------------------------CAACAGCAGCAGCAGC.............................................................................................................................................................................................................................................................................................19200.0510100000
.......................................................................................................CAACAACAG-------------------------------------------------------------------------------------CAACAGCAGC...................................................................................................................................................................................................................................................................................................19200.0511000000
....................................................AGCAGCAACAG---CAGCAACA-GCAGC----AG............................................................................................................................................................................................................................................................................................................................................................................................................................26200.0511000000
.............................................................................................................................................................................................................GCAGCAGCAACAGCAGCAGCA................................................................................................................................................................................................................................................................................21200.0510001000
...........................................................ACAG---CAGCAACA-GCAGC----A.............................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000100
.......................................................................................................CAACAACAG-------------------------------------------------------------------------------------CAACAGCAGCAG.................................................................................................................................................................................................................................................................................................21200.0510001000
...............CA----G------CAA--------------------CAGCAGCAACAG---CAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0511000000
...................................................................AGCAACA-GCAGC----AGCAG--------------CA.........................................................................................................................................................................................................................................................................................................................................................................................................19200.0510001000
........................................................................................................................................................................................................CAGCAGCAGCAGCAACAGC.......................................................................................................................................................................................................................................................................................19200.0510000010
..................................................................CAGCAACA-GCAGC----AGCAG--------------CAAC.......................................................................................................................................................................................................................................................................................................................................................................................................22200.0510100000
..........................................................................................................CAACAG-------------------------------------------------------------------------------------CAACAGCAGCAGCAGCA............................................................................................................................................................................................................................................................................................23200.0510001000

Generated: 05/18/2015 at 12:46 AM