ID:

dmo_1516

 Coordinate:

scaffold_6500:11436752-11436902 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-0.5 0.0

Flybase annnotation

exon [dmoj_GLEANR_1220:3]; CDS [Dmoj\GI12165-cds]; intron [Dmoj\GI12165-in]

Repeatable elements

NameClassFamilyStrand
(TAG)nSimple_repeatSimple_repeat+
mature
  1. dmo_1516  scaffold_6500:11436845-11436868 -
  2. scaffold_6500:11437616-11437639 -
star
  1. scaffold_6500:11436270-11436292 -
  2. scaffold_6500:11436306-11436328 -
  3. scaffold_6500:11436540-11436562 -
  4. scaffold_6500:11436684-11436706 -
  5. dmo_1516  scaffold_6500:11436810-11436832 -
  6. scaffold_6500:11436951-11436973 -
  7. scaffold_6500:11437455-11437477 -
  8. scaffold_6500:11437509-11437531 -
  9. scaffold_6500:11437704-11437726 -
  10. scaffold_6500:11437812-11437834 -
  11. scaffold_6500:11437848-11437870 -
  12. scaffold_6500:11437884-11437906 -
  13. scaffold_6500:11437920-11437942 -
  14. scaffold_6500:11437956-11437978 -
  15. scaffold_6500:11436576-11436598 -
  16. scaffold_6500:11436612-11436634 -
  17. scaffold_6500:11436648-11436670 -
  18. scaffold_6500:11437563-11437585 -
  19. scaffold_6500:11437992-11438014 -
  20. scaffold_6500:11438028-11438050 -
  21. scaffold_6500:11438064-11438086 -

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ACTACTACGACGCCTTCAACTACGATACCAATACCGACTCTACCACCAGGGTTTTGCGAAACGTTCTCGTTCTTTAAATTCTGCTTTAGCACGACAACTCCACTGCCCTTAACTACACCTTCAACTACTACTACACCTTCAACTACTACTACACCTTCAACTACTACGACGCCTTCAACTACTACAACGCCTTCAACTACGACTACGCCTTCAACTACTACTACGCCTTCAACTACGACAACACCTTCAAC
************************************************************************************....(((.((....))...))).....................................************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M060
embryo
 M046
female body
 V041
embryo
 V049
head
....................................................................................TTTAGCACGACAACTCCACTGCCC............................................................................................................................................... 24 0 2 0.50 1 1 0 0 0
............CCTTCAACTACGATACCAATACCGACT.................................................................................................................................................................................................................... 27 0 2 0.50 1 0 1 0 0
.........................TACCAATACCGACTCTACC............................................................................................................................................................................................................... 19 0 2 0.50 1 1 0 0 0
..............TTCAACTACGATACCAATACCGACTC................................................................................................................................................................................................................... 26 0 2 0.50 1 0 1 0 0
.............................AATACCGACTCTACCACCAGGGT....................................................................................................................................................................................................... 23 0 2 0.50 1 1 0 0 0
...............................TACCTACTCTACCGTCAGGGTT...................................................................................................................................................................................................... 22 3 2 0.50 1 0 1 0 0
......................................TCTACCACCAGGGTTTTGCTAAAC............................................................................................................................................................................................. 24 1 2 0.50 1 1 0 0 0
..................................................................................................................................................................................................................TCAACTACTACTACGCCTTCAACTAC............... 26 0 6 0.33 2 0 2 0 0
........................................................................................................................................................................................................................ACTACTACGCCTTCAACTACGACAACACC...... 29 0 3 0.33 1 1 0 0 0
............................................................................................................................................................................................................ACGCCTTCAACTACTACTACGCC........................ 23 0 6 0.33 2 2 0 0 0
.....................................................................................TTAGCACGACAACTCCACTGCCC............................................................................................................................................... 23 0 3 0.33 1 1 0 0 0
................................................................................................ACTCCACTGCCCTTAACTACACC.................................................................................................................................... 23 0 3 0.33 1 1 0 0 0
................................................................................................................................................................................................TCAACTACGACTACGCCTTCAAC.................................... 23 0 13 0.31 4 2 2 0 0
........................................................................................................................TCAACTACTACTACACCTTCAAC............................................................................................................ 23 0 20 0.25 5 4 1 0 0
.....................................................................................................................................................................................................................................CAACTACGACAACACCTTCAAC 22 0 8 0.25 2 2 0 0 0
..........................................................................................................CCTTAACTACACCCTCAGCGA............................................................................................................................ 21 3 4 0.25 1 1 0 0 0
....................................................................................................................................................................TACGACGCCTTCAACTACTACAACGCC............................................................ 27 0 9 0.22 2 2 0 0 0
..........................................................................................................................................TCAACTACTACTACACCTTCAAC.......................................................................................... 23 0 20 0.20 4 4 0 0 0
.................................................................................................................................................................................ACTACTACAACGCCTTCAAC...................................................... 20 0 10 0.20 2 2 0 0 0
........................................................................................................................................................................................CAACGCCTTCAACTATGACTACGCC.......................................... 25 1 6 0.17 1 1 0 0 0
...................................................................................................................................................................................................................CAACTACTACTACGCCTTCAACT................. 23 0 6 0.17 1 0 1 0 0
............................................................................................................................................................TCAACTACTACGACGCCTTCAAC........................................................................ 23 0 18 0.17 3 0 3 0 0
..................................................................................................................................................................................CTACTACAACGCCTTCAACTACG.................................................. 23 0 6 0.17 1 1 0 0 0
..........................................................................................................................................................CTTCAACTACTACGACGCC.............................................................................. 19 0 18 0.17 3 3 0 0 0
.................................................................................................................................................................................ACTACTACAACGCCTTCAACTACGACTAC............................................. 29 0 6 0.17 1 1 0 0 0
.......................................................................................................................................................................................ACAACGCCTTCAACTACGAC................................................ 20 0 6 0.17 1 1 0 0 0
................................................................................................................................................................................AACTACTACAACGCCTTCAACTACGACT............................................... 28 0 6 0.17 1 1 0 0 0
............................................................................................................................................................TCAACTACTACGACGCCTTCA.......................................................................... 21 0 18 0.17 3 3 0 0 0
....................................................................................................................................................................................ACTACAACGCCTTCAACTACGACT............................................... 24 0 6 0.17 1 1 0 0 0
...................................................................................................................................................................................TACTACAACGCCTTCAACTACG.................................................. 22 0 6 0.17 1 1 0 0 0
.................................................................................................................................................................................................................TTCAACTACTACTACGCC........................ 18 0 6 0.17 1 1 0 0 0
.CTACTACGACGCCTTCAAC....................................................................................................................................................................................................................................... 19 0 18 0.17 3 3 0 0 0
..................................................................................................................................................................................................................TCAACTACTACTACGCCTTC..................... 20 0 6 0.17 1 1 0 0 0
.....................................................................................................................................................................................................................ACTACTACTACGCCTTCAAC.................. 20 0 6 0.17 1 1 0 0 0
..........................................................................................................................................................................................................CTACGCCTTCAACTACTACTACGCC........................ 25 0 6 0.17 1 1 0 0 0
..................................................................................................................................................................................................................TCAACTACTACTACGCCTTCAAC.................. 23 0 6 0.17 1 0 1 0 0
...........................................................................................................................................................TTCAACTACTACGACGCCTTCAACTAC..................................................................... 27 0 18 0.17 3 1 2 0 0
............................................................................................................................................................TCAACTACTACGACGCCTTCAACTA...................................................................... 25 0 18 0.17 3 0 3 0 0
...............................................................................................................................................................ACTACTACGACGCCTTCAACT....................................................................... 21 0 18 0.17 3 3 0 0 0
................................................................................................................................................................CTACTACGACGCCTTCAAC........................................................................ 19 0 18 0.17 3 3 0 0 0
ACTACTACGACGCCTTCAACT...................................................................................................................................................................................................................................... 21 0 18 0.17 3 3 0 0 0
...............................................................................................................................................................................................TTCAACTACGACTACGCCTTCAAC.................................... 24 0 13 0.15 2 1 1 0 0
..................................................................................................................................................TACTACACCTTCAACTACTACGACGC............................................................................... 26 0 7 0.14 1 0 1 0 0
................................................................................................................................................ACTACTACACCTTCAACTACTACG................................................................................... 24 0 7 0.14 1 0 1 0 0
......................................................................................................................................................ACACCTTCAACTACTACGACGCCTTCAA......................................................................... 28 0 7 0.14 1 1 0 0 0
........................................................................................................................................................ACCTTCAACTACTACGACGCC.............................................................................. 21 0 7 0.14 1 1 0 0 0
................................................................................................................................................ACTACTACACCTTCAACTACTACGACG................................................................................ 27 0 7 0.14 1 0 1 0 0
...................................................................................................................................................ACTACACCTTCAACTACTACGACGCCT............................................................................. 27 0 7 0.14 1 1 0 0 0
...................................................................................................................................................ACTACACTTTCAACTACTACGACG................................................................................ 24 1 7 0.14 1 1 0 0 0
....................................................................................................................................................CTATACCTTCAACTACTATGACGCC.............................................................................. 25 2 7 0.14 1 1 0 0 0
...............................................................................................................................................TACTACTACACCTTCAACTACTACG................................................................................... 25 0 7 0.14 1 0 1 0 0
......................................................................................................................................................ACACCTTCAACTACTACGACGCCT............................................................................. 24 0 7 0.14 1 1 0 0 0
..........................................................................................................................................................................................ACGCCTTCAACTACGACTACGCCC......................................... 24 1 8 0.13 1 1 0 0 0
...................................TACTCTACCGTCAGGGTT...................................................................................................................................................................................................... 18 3 16 0.13 2 0 2 0 0
....................................................................................................................................................................................................................................TCAACTACGACAACACCTTCAA. 22 0 8 0.13 1 0 1 0 0
.................................................................................................................................................................................................................................CCTTCAACTACGACAACACCTTCA.. 24 0 8 0.13 1 1 0 0 0
....................................................................................................................................................................................................................................TCAACTACGACAACACCTTCAAC 23 0 8 0.13 1 0 1 0 0
..........................................................................................................................................................................GCCTTCACCTACTACAACGCCT........................................................... 22 1 9 0.11 1 1 0 0 0
..................................................................................................................................................................................................................................CTTCAACTACGACAACACC...... 19 0 9 0.11 1 1 0 0 0
...............................................................................................................................................................ACTACTACGACGCCTTCAACTA...................................................................... 22 0 18 0.11 2 2 0 0 0
ACTACTACGACGCCTTCAACTA..................................................................................................................................................................................................................................... 22 0 18 0.11 2 2 0 0 0
............................................................................................................................................................TCAACTACTACGACGCCTTCAACT....................................................................... 24 0 18 0.11 2 0 2 0 0
....................................................................................................................................................................TACGACGCCTTCAACTACTACAAC............................................................... 24 0 9 0.11 1 1 0 0 0
..........................................................................................................................................................................GCCTTCAACTCCTACAACGCCT........................................................... 22 1 9 0.11 1 1 0 0 0
.........................................................................................................................................................................CGACTTCAACTACTACAACGCC............................................................ 22 1 9 0.11 1 1 0 0 0
................................................................................................................................................ACTACTACACCTTCAACTAC....................................................................................... 20 0 20 0.10 2 2 0 0 0
...................................................................................................................................................................................TACTACAACGCCTTCAACT..................................................... 19 0 10 0.10 1 1 0 0 0
..............................................................................................................................................................................TGAACTACTACAACGCCTTCA........................................................ 21 1 10 0.10 1 1 0 0 0
...............................................................................................................................................................................CAACTACTACAACGCCTTCA........................................................ 20 0 10 0.10 1 1 0 0 0
..............................................................................................................................................CTACTACTACACCTTCAAC.......................................................................................... 19 0 20 0.10 2 2 0 0 0
..............................................................................................................................................................................TCAACTACTACAACGCCTTCA........................................................ 21 0 10 0.10 1 1 0 0 0
.........................................................................................................................................TTCAACTACTACTACACC................................................................................................ 18 0 20 0.10 2 2 0 0 0
...................................................................................................................................................................................TACTACAACGCCATCAACTAC................................................... 21 1 10 0.10 1 1 0 0 0
..............................................................................................................................ACTACTACACCTTCAACTAC......................................................................................................... 20 0 20 0.10 2 2 0 0 0
............................................................................................................................................................................CTTCAACTACTACAACGCCA........................................................... 20 1 10 0.10 1 0 0 1 0
................................................................................................................................TACTACACCTTCAACTACTACTACACC................................................................................................ 27 0 20 0.10 2 0 2 0 0
............................................................................................................................CTACTACTACACCTTCAAC............................................................................................................ 19 0 20 0.10 2 2 0 0 0
..............................................................................................................................................................................TCAACTACTACAACGCCTTCAACTAC................................................... 26 0 10 0.10 1 0 1 0 0
...........................................................................................................................................................................CCTTCAACTACTACAACGCCTTCA........................................................ 24 0 10 0.10 1 0 1 0 0
..................................................................................................................................................................................CGACTACAACGCCTTCAAC...................................................... 19 1 10 0.10 1 1 0 0 0
..............................................................................................................................................................................TCAACTACTACAACGCCTTCAAC...................................................... 23 0 10 0.10 1 0 1 0 0
...........................................................................................................................................................................CCTTCAACTACTACAACGCCTTC......................................................... 23 0 10 0.10 1 1 0 0 0
..............................................................................................................................................................................ATCACTACTACAACGCCTTCAAC...................................................... 23 3 11 0.09 1 1 0 0 0
............................................................................................................................................................................CGTCAACTACTACAACGCC............................................................ 19 1 11 0.09 1 1 0 0 0
..............................................................................................................................................................................TCAACTACTACAACGCCA........................................................... 18 1 12 0.08 1 1 0 0 0
..............................................................................................................................................................................................CTTCAACTACGACTACGCCTTC....................................... 22 0 13 0.08 1 1 0 0 0
....................................................................................................................................................................................................CTACGACTACGCCTTCAACT................................... 20 0 13 0.08 1 1 0 0 0
................................................................................................................................................................................................TCAACTACGACTACGCCTTCAACTA.................................. 25 0 13 0.08 1 0 1 0 0
................................................................................................................................................................................................TCAACTACGACTACGCCTTCAACT................................... 24 0 13 0.08 1 0 1 0 0
................................................................................................................................................................................................TCAACTACGACTACGCCTTCAACTAC................................. 26 0 13 0.08 1 1 0 0 0
................................................................................................................................................................................................TCAACTACGACTACGCCTTCAA..................................... 22 0 13 0.08 1 0 1 0 0
.....................................................................................................................................................................................................TACGACTACGCCTTCAACTA.................................. 20 0 13 0.08 1 1 0 0 0
................................................................................................................................................................................................TCAACTACGACTACGCCTTCA...................................... 21 0 13 0.08 1 0 1 0 0
...............................................................................................................................................................................................TTCAACTACGACTACGCCT......................................... 19 0 13 0.08 1 1 0 0 0
...............................................................................................................................................................................................TTCAACTACGACTACGCCTTC....................................... 21 0 13 0.08 1 1 0 0 0
.........................................................................................................................................................CCTTCAACTACTACGACGCCTTCA.......................................................................... 24 0 16 0.06 1 1 0 0 0
.........................................................................................................................................................CCTTCAACTACTACGACGCCTTC........................................................................... 23 0 16 0.06 1 0 1 0 0
.......................................................................................................................................................ATCCTTCAACTGCTACGACGCCT............................................................................. 23 3 16 0.06 1 1 0 0 0
............................................................................................................................................................TCAACTACTACGACGCCTTC........................................................................... 20 0 18 0.06 1 0 0 1 0
............................................................................................................................................................TCAACTACTACGACGCCT............................................................................. 18 0 18 0.06 1 1 0 0 0
..............................................................................................................................................................AACTACTACGACGCCTTCAAC........................................................................ 21 0 18 0.06 1 1 0 0 0
ACTACTACGACGCCTTCAAC....................................................................................................................................................................................................................................... 20 0 18 0.06 1 0 1 0 0
............................................................................................................................................................TCAACTACTACGACGCCTTCAACTAC..................................................................... 26 0 18 0.06 1 0 1 0 0
..TACTACGACGCCTTCAACT...................................................................................................................................................................................................................................... 19 0 18 0.06 1 1 0 0 0
...............................................................................................................................................................ACTACTACGACGCCTTCAAC........................................................................ 20 0 18 0.06 1 0 1 0 0
..........................................................................................................................................................CTTCAACTACTACGACGCCTTCAACTAC..................................................................... 28 0 18 0.06 1 1 0 0 0
.................................................................................................................................................................TACTACGACGCCTTCAACT....................................................................... 19 0 18 0.06 1 1 0 0 0
............................................................................................................................................................TCAACTACTACGACGCCTTCAA......................................................................... 22 0 18 0.06 1 0 1 0 0
..TACTACGACGCCTTCAACTAC.................................................................................................................................................................................................................................... 21 0 18 0.06 1 1 0 0 0
..........................................................................................................................................................CTTCAACTACTACGACGCCT............................................................................. 20 0 18 0.06 1 0 0 1 0
...........................................................................................................................................................TTCAACTACTACGACGCCT............................................................................. 19 0 18 0.06 1 1 0 0 0
.................................................................................................................................................................TACTACGACGCCTTCAACTAC..................................................................... 21 0 18 0.06 1 1 0 0 0
.............................................................................................................................................................CAACTACTACGACGCCTTCA.......................................................................... 20 0 18 0.06 1 0 1 0 0
..................................................................................................................................CGACACCTTCAACTACTACTAC................................................................................................... 22 1 20 0.05 1 1 0 0 0
..............................................................................................................................ACTTCTACACCTTCAACTACTACTACACC................................................................................................ 29 1 20 0.05 1 1 0 0 0
.....................................................................................................................CCTTCAACTACTACTACACC.................................................................................................................. 20 0 20 0.05 1 1 0 0 0
....................................................................................................................................................CTACACCTTCAACTACTAC.................................................................................... 19 0 20 0.05 1 1 0 0 0
...............................................................................................................ACTACACCTTCAACTACTACTACACC.................................................................................................................. 26 0 20 0.05 1 1 0 0 0
..........................................................................................................................................TCAACTACTACTACACCTTCAAAAAC....................................................................................... 26 2 20 0.05 1 0 1 0 0
...........................................................................................................................ACTACTACTACACCTTCAACC........................................................................................................... 21 1 20 0.05 1 1 0 0 0
...........................................................................................................................ACCACTACTACACCTTCAACTAC......................................................................................................... 23 1 20 0.05 1 1 0 0 0
...........................................................................................................................ACTACTACTACACCTTCAACTACTAC...................................................................................................... 26 0 20 0.05 1 1 0 0 0
..........................................................................................................................................TCAACTACTACTACACCTTCAACTAC....................................................................................... 26 0 20 0.05 1 0 1 0 0
........................................................................................................................TCAACTACTACTACACCTTCAACTACT........................................................................................................ 27 0 20 0.05 1 0 1 0 0
........................................................................................................................TCAACTACTACTACACCTTCAACTACTAC...................................................................................................... 29 0 20 0.05 1 1 0 0 0
............................................................................................................................................AACTACTACTACACCTTCAACT......................................................................................... 22 0 20 0.05 1 1 0 0 0
..........................................................................................................................................TCAACTACTACTACACCTTCAACTA........................................................................................ 25 0 20 0.05 1 0 1 0 0
............................................................................................................................CTACTACTACACCTTCAACTACTACTAC................................................................................................... 28 0 20 0.05 1 1 0 0 0
................................................................................................................CGACACCTTCAACTACTACTAC..................................................................................................................... 22 1 20 0.05 1 1 0 0 0
.........................................................................................................................CAACTACTACTACACCTTC............................................................................................................... 19 0 20 0.05 1 1 0 0 0
..............................................................................................................................ACTACTACACCTTCAACTACTAC...................................................................................................... 23 0 20 0.05 1 1 0 0 0
..........................................................................................................................................TCAACTACTGCTACACCTTCAACTACTG..................................................................................... 28 2 20 0.05 1 0 1 0 0
.........................................................................................................................................TTCAACTACTACTACACCTTCATC.......................................................................................... 24 1 20 0.05 1 1 0 0 0
.............................................................................................................................................ACTACTACTACACCTTCAACTACTAC.................................................................................... 26 0 20 0.05 1 1 0 0 0
........................................................................................................................TCATCTACTACTACACCTTCAAC............................................................................................................ 23 1 20 0.05 1 1 0 0 0
.......................................................................................................................................CCTTCAACTACTACTACACC................................................................................................ 20 0 20 0.05 1 1 0 0 0
..................................................................................................................................CTACACCTTCAACTACTAC...................................................................................................... 19 0 20 0.05 1 1 0 0 0
......................................................................................................................CTTCAACTACTACTACACCTTCA.............................................................................................................. 23 0 20 0.05 1 1 0 0 0
..........................................................................................................................................TCAACTACTACTACACCTTC............................................................................................. 20 0 20 0.05 1 1 0 0 0
..........................................................................................................................AACTACTACTACACCTTCAACT........................................................................................................... 22 0 20 0.05 1 1 0 0 0
....................................................................................................................ACATTCAAATACTTCTACACC.................................................................................................................. 21 3 20 0.05 1 0 0 1 0
.................................................................................................................TACACCTTCAACTACTACTAC..................................................................................................................... 21 0 20 0.05 1 1 0 0 0
.....................................................................................................................................CACCTTCAACTACTACTACACCT............................................................................................... 23 0 20 0.05 1 1 0 0 0
.......................................................................................................................TTCAACTACTACTACACCTTCAACTAC......................................................................................................... 27 0 20 0.05 1 0 1 0 0
.......................................................................................................................................................................................TCAAAGCCTTAAACTACGA................................................. 19 3 20 0.05 1 0 0 0 1
...........................................................................................................................................CAACTACTACTACACCTTCAACT......................................................................................... 23 0 20 0.05 1 1 0 0 0
................................................................................................................................................ACTTCTACACCTTCAACTACTACC................................................................................... 24 2 20 0.05 1 1 0 0 0
..........................................................................................................................................TCATCTACTACTACACCTTCAAC.......................................................................................... 23 1 20 0.05 1 1 0 0 0
..........................................................................................................................................TCAACTACTACTACACCTTCAACTACT...................................................................................... 27 0 20 0.05 1 0 1 0 0
........................................................................................................................................CTTCAACTACTACTACACCTTCA............................................................................................ 23 0 20 0.05 1 1 0 0 0
.......................................................................................................................................CCTTCAACTACTGCTACACCTTCAACTA........................................................................................ 28 1 20 0.05 1 0 1 0 0
........................................................................................................................TCAACTACTACTACACCTTCAAAAAC......................................................................................................... 26 2 20 0.05 1 0 1 0 0
........................................................................................................................TCAACTACTGCTACACCTTCAACTACTG....................................................................................................... 28 2 20 0.05 1 0 1 0 0
..............................................................................................................................ACTACTACACCTTCAACTACTACT..................................................................................................... 24 0 20 0.05 1 0 1 0 0
.........................................................................................................................CAACTACTACTACACCTTCAACT........................................................................................................... 23 0 20 0.05 1 1 0 0 0
....................................................................................................................................ACACCTTCAACTACTACTACACCT............................................................................................... 24 0 20 0.05 1 1 0 0 0
..............................................................................................................................ACTACTACACCTTCAACTACTACTAC................................................................................................... 26 0 20 0.05 1 1 0 0 0
.......................................................................................................................................CGTTCAACTACTACTACACCTTCAACT......................................................................................... 27 1 20 0.05 1 1 0 0 0
........................................................................................................................TCAACTACTACTACACCTTC............................................................................................................... 20 0 20 0.05 1 1 0 0 0
.............................................................................................................................................ACTACTACTACACCTTCAACC......................................................................................... 21 1 20 0.05 1 1 0 0 0
..............................................................................................................................ACTACTACACCTTCAACTACTGCT..................................................................................................... 24 1 20 0.05 1 0 1 0 0
.............................................................................................................................................ACCACTACTACACCTTCAACTAC....................................................................................... 23 1 20 0.05 1 1 0 0 0
.......................................................................................................................TTCAACTACTACTACACCTTCATC............................................................................................................ 24 1 20 0.05 1 1 0 0 0
.....................................................................................................................CCTTCAACTACTGCTACACCTTCAACTA.......................................................................................................... 28 1 20 0.05 1 0 1 0 0
.................................................................................................................................ACTACACCTTCAACTACTACTACACC................................................................................................ 26 0 20 0.05 1 1 0 0 0
...........................................................................................................................................CAACTACTACTACACCTTC............................................................................................. 19 0 20 0.05 1 1 0 0 0
........................................................................................................................TCAACTACTACTACACCTTCAACTA.......................................................................................................... 25 0 20 0.05 1 0 1 0 0
.....................................................................................................................TCTTCAACTACTACTACACCT................................................................................................................. 21 1 20 0.05 1 1 0 0 0
................................................................................................................................................ACTACTACACCTTCAACTACTAC.................................................................................... 23 0 20 0.05 1 1 0 0 0
............................................................................................................................................................TCAACTACTACGACACTTTCAACT....................................................................... 24 2 20 0.05 1 0 1 0 0
..........................................................................................................................................TCAACTACTACTACACCTTCAACTACTA..................................................................................... 28 0 20 0.05 1 0 1 0 0
...............................TACCTACTCTACCGTCAG.......................................................................................................................................................................................................... 18 3 20 0.05 1 0 1 0 0
........................................................................................................................TCAACTACTACTACACCTTCAACTAC......................................................................................................... 26 0 20 0.05 1 0 1 0 0
......................................................................................................................CTTCAACTACTACTACACC.................................................................................................................. 19 0 20 0.05 1 1 0 0 0

Anti-sense strand reads

TGATGATGCTGCGGAAGTTGATGCTATGGTTATGGCTGAGATGGTGGTCCCAAAACGCTTTGCAAGAGCAAGAAATTTAAGACGAAATCGTGCTGTTGAGGTGACGGGAATTGATGTGGAAGTTGATGATGATGTGGAAGTTGATGATGATGTGGAAGTTGATGATGCTGCGGAAGTTGATGATGTTGCGGAAGTTGATGCTGATGCGGAAGTTGATGATGATGCGGAAGTTGATGCTGTTGTGGAAGTTG
************************************************************************************************************....(((.((....))...))).....................................************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V041
embryo
 V110
male body		 V056
head
 M060
embryo
...............................................................................................................................................................TGATGATGCTGCGGAAGTTGATGAT................................................................... 25 0 11 0.64 7 7 0 0 0 0
..........................................................................................................GGAATTGATGTGGAAGTTGATGAT......................................................................................................................... 24 0 2 0.50 1 0 1 0 0 0
............GGAAGTTGATGCTATGGTTATGGCT...................................................................................................................................................................................................................... 25 0 2 0.50 1 1 0 0 0 0
............GGCAGTTGATGCTATGGG............................................................................................................................................................................................................................. 18 2 2 0.50 1 0 0 1 0 0
..........................................................................................................GGAATTTATTTGGAAGTTGATGAT......................................................................................................................... 24 2 2 0.50 1 0 1 0 0 0
................................................................................................................................................................GATGATGCTGCGGAAGTTGATGAT................................................................... 24 0 11 0.36 4 4 0 0 0 0
.......................................................................................................................................................................................................................................TGATTCTGCGGTGGAAGTTG 20 3 13 0.31 4 1 0 3 0 0
...................................................................................................................................................................GATGCTGCGGAAGTTGATGAT................................................................... 21 0 11 0.27 3 1 1 0 0 1
..............................................................................................................................TGATGATGTGGAAGTTGATGAT....................................................................................................... 22 0 20 0.25 5 4 1 0 0 0
.......................................................................................TCGTGCGATTGGGGTGACGGG............................................................................................................................................... 21 3 4 0.25 1 0 0 0 1 0
............................................................................................................................GATGATGATGTGGAAGTTGATGAT....................................................................................................... 24 0 20 0.25 5 5 0 0 0 0
................................................................................................................................................TGATGATGTGGAAGTTGATGAT..................................................................................... 22 0 20 0.25 5 4 1 0 0 0
........................TTGGGTTATGGCTGAGACGGT.............................................................................................................................................................................................................. 21 3 5 0.20 1 0 0 0 1 0
..................................................................................................................................................................TGATGCTGCGGAAGTTGATGAT................................................................... 22 0 11 0.18 2 2 0 0 0 0
.......................................................................................................................................................................................................GCTGATGCGGAAGTTGATGATGA............................. 23 0 6 0.17 1 1 0 0 0 0
..................................................................................................................................................................................GATGATGTTGCGGAAGTTGATGCT................................................. 24 0 6 0.17 1 1 0 0 0 0
...................................................................................................................................................................................ATGATGTTGCGGAAGTTGATGCT................................................. 23 0 6 0.17 1 1 0 0 0 0
...................................................................................................................................................................................................TGATGCTGATGCGGAAGTTGATGAT............................... 25 0 12 0.17 2 2 0 0 0 0
TGATGATGCTGCGGAAGTTGATGCT.................................................................................................................................................................................................................................. 25 0 7 0.14 1 1 0 0 0 0
.......................................................................................................................................................GTGGAAGTTGATGATGCTGCGGAAGTT......................................................................... 27 0 7 0.14 1 1 0 0 0 0
TGATGATGCTGCGGAAGTTGATGC................................................................................................................................................................................................................................... 24 0 7 0.14 1 1 0 0 0 0
..................................................................................................................................................................TGATGCTGCGGAAGTTGATGATGTT................................................................ 25 0 9 0.11 1 1 0 0 0 0
...............................................................................................................TGATGTGGAAGTTGATGATGATGTG................................................................................................................... 25 0 20 0.10 2 2 0 0 0 0
...............................................................................................................................GATGATGTGGAAGTTGATGATGA..................................................................................................... 23 0 20 0.10 2 2 0 0 0 0
.................................................................................................................................TGATGTGGAAGTTGATGATGATGTG................................................................................................. 25 0 20 0.10 2 2 0 0 0 0
..........................................................................................................................TTGATGATGATGTGGAAGTTGATGAT....................................................................................................... 26 0 20 0.10 2 2 0 0 0 0
................................................................................................................................................................AATGATGCTGCGGAAGTTGATGAT................................................................... 24 1 11 0.09 1 0 1 0 0 0
.................................................................................................................................................................ATGATGCTGCGGAAGTTGATGA.................................................................... 22 0 11 0.09 1 1 0 0 0 0
..............................................................................................................................................................TTGATGATGCTGCGGAAGTTGATGAT................................................................... 26 0 11 0.09 1 1 0 0 0 0
.........................GGGGTTATGGCTGAGACGGT.............................................................................................................................................................................................................. 20 3 11 0.09 1 0 0 0 1 0
......................................................................................................................................................................GCTGCGGAAGTTGATGAT................................................................... 18 0 11 0.09 1 1 0 0 0 0
................................................................................................................................................................GAAGATGCTGCGGAAGTTGATGAT................................................................... 24 1 11 0.09 1 1 0 0 0 0
..................................................................................................................................................................TGATGCTGCGGAAGTTGGTGAT................................................................... 22 1 11 0.09 1 0 0 0 0 1
.................................................................................................................................................................................................GTTGATGCTGATGCGGAAGTTGATGAT............................... 27 0 12 0.08 1 1 0 0 0 0
....................................................................................................................................................................................................GATGCTGATGCGGAAGTTGATGAT............................... 24 0 12 0.08 1 1 0 0 0 0
....................................................................................................................................................................................................GATGCTGATGCGGAAGTTGATG................................. 22 0 13 0.08 1 1 0 0 0 0
.............................................................................................................................................................................................GGAAGTTGATGCTGATGCGGAAGT...................................... 24 0 13 0.08 1 1 0 0 0 0
...............................................................................................................................................................................................AAGTTGATGCTGATGCGGAAGTTGAT.................................. 26 0 13 0.08 1 0 0 1 0 0
.........................................................................................................................................................GGAAGTTGATGATGCTGCGGAAGTT......................................................................... 25 0 16 0.06 1 1 0 0 0 0
...................................................................................................................................................................................................TGATGCTGATTCGGAAGA...................................... 18 2 18 0.06 1 1 0 0 0 0
..........................................................................................................................................................GAAGTTGATGATGCTGCGGAAGT.......................................................................... 23 0 18 0.06 1 1 0 0 0 0
................................................................................................................................ACGATGTGGAAGTTGATGATGATGTG................................................................................................. 26 1 20 0.05 1 1 0 0 0 0
............................................................................................................................GATGACGATGTGGAAGTTGATGA........................................................................................................ 23 1 20 0.05 1 1 0 0 0 0
...............................................................................................................................GATGATGTGGAAGTTGATGATGATG................................................................................................... 25 0 20 0.05 1 1 0 0 0 0
...............................................................................................................................GATGATGTGGAAGTTGATGATGATGTG................................................................................................. 27 0 20 0.05 1 1 0 0 0 0
....................................................................................................................TGGAAGTTGATGATGATGTGGAAG............................................................................................................... 24 0 20 0.05 1 1 0 0 0 0
..............................................................................................................................TGATGATGTGGAAGTTGAGGAT....................................................................................................... 22 1 20 0.05 1 0 0 0 0 1
....................................................................................................................TGGAAGTTGATGATGAGGTGGAAGTT............................................................................................................. 26 1 20 0.05 1 1 0 0 0 0
...........................................................................................................................TGATGATGATGTGGAAGTTGATGAT....................................................................................................... 25 0 20 0.05 1 1 0 0 0 0
................................................................................................................................AAGATGTGGAAGTTGATGAT....................................................................................................... 20 1 20 0.05 1 1 0 0 0 0
...............................................................................................................................GATGATGTGGAAGTTGATGATGATGT.................................................................................................. 26 0 20 0.05 1 1 0 0 0 0
...................................................................................................................GTGGAAGTTGATGATGATGTGGAA................................................................................................................ 24 0 20 0.05 1 0 0 1 0 0
......................................................................................................................................TGGAAGTTGATGATGAGGTGGAAGTT........................................................................................... 26 1 20 0.05 1 1 0 0 0 0
.............................................................................................................................ATGATGATGTGGAAGTTGATGAT....................................................................................................... 23 0 20 0.05 1 0 0 0 0 1
..............................................................................................................................CGATGATGTGGAAGTTGATGAT....................................................................................................... 22 1 20 0.05 1 0 0 0 0 1
..............................................................................................................................................GATGACGATGTGGAAGTTGATGA...................................................................................... 23 1 20 0.05 1 1 0 0 0 0
...............................................................................................................................AAAGATGTGGAAGTTGATGAT....................................................................................................... 21 2 20 0.05 1 1 0 0 0 0
........................................................................................................................................................................................................................................GATTCTGCGGTGGAAGTTG 19 3 20 0.05 1 0 0 1 0 0
......................................................................................................................................TGGAAGTTGATGATGATGTGGAAG............................................................................................. 24 0 20 0.05 1 1 0 0 0 0
................................................................................................................................................TGATGATGTGGAAGTTGAGGAT..................................................................................... 22 1 20 0.05 1 0 0 0 0 1
.................................................................................................................ATGTGGAAGTTGATGATGATGT.................................................................................................................... 22 0 20 0.05 1 0 0 1 0 0
.................................................................................................................................................AAAGATGTGGAAGTTGATGAT..................................................................................... 21 2 20 0.05 1 1 0 0 0 0
.............................................................................................................................................TGATGATGATGTGGAAGTTGATGAT..................................................................................... 25 0 20 0.05 1 1 0 0 0 0
............................................................................................................AGTTCATGTGGAACTTGAT............................................................................................................................ 19 3 20 0.05 1 1 0 0 0 0
........................................................................................................................................GAAGTTGATGATGATGTGGAAGTTG.......................................................................................... 25 0 20 0.05 1 0 0 1 0 0
..................................................................................................................................................AAGATGTGGAAGTTGATGAT..................................................................................... 20 1 20 0.05 1 1 0 0 0 0
...............................................................................................................................................ATGATGATGTGGAAGTTGATGAT..................................................................................... 23 0 20 0.05 1 0 0 0 0 1
........................................................................................................................................GAAGTTGATGATGATGTGGAAGT............................................................................................ 23 0 20 0.05 1 1 0 0 0 0
...................................................................................................................................ATGTGGAAGTTGATGATGATGT.................................................................................................. 22 0 20 0.05 1 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6500:11436702-11436952 - dmo_1516 ACTACTACGACGCCTT--------CAACTACGATACC---AATACCGACTCTAC-CA-----------------CCAG------------------------------------------GGT-----T--------------TT------GCGAAAC------G---------TTCTCGTTCTTTAAATTCTGCTTTAGCACGACAACTCCACTGCCCTTA------ACTACACCTTCAACTACTACTA----------CACCTT------------------------------------------------------CAACTACTAC-TACAC---------------CTTCAACTACTACGACGC---------------------------------------------------------CTT------------CAACTACTACAACGCCTTCAACTACG---------------------ACTACGCCT------------------TCAACTACTACTACGCCT------------TCAACT------------------ACGACAACACCTTCAAC
droVir3 scaffold_12726:1106812-1107027 - AATGCTTCGTCTACTTTCCGCTGCCTACTGCTATTT-----------ACGACT-CTACTACTTCTGTCACTACTCTT-------CTACTAC-----------------------------------------------------T---------------ACAACTACTACTA---CTACAACTA-----------------------------------------------------CTACTACAACTA-------------------CTACTACT----------------------------------ACTACTACA------------------------------------ACTACTACTACTA---------------------------------------------------------CTA------------CTACTACTACTACTACTACTACTACT---------------------ACTACTACT------------------ACTACTACTACTACTACT------------ACAACT------------------ACAACTACTACTACTAC
droGri2 scaffold_6800:903-1128 + ACTACTACTATTACTA--------CAACAACTATATC---TACCATAACGACTACTA-----------------CTATTA----------------------------------------CTAGTTCT--AC---------TCTTATTACTACTACTG---------------C------TA-----------------------------------------------CTATTACTACTACT------AA----------TATTT---------------------CTACTACTATCTT-------A------------CTA---CTAC-TACTA---------------------C---------TA------------------------------------------CTACTATTACTACTACTA------------CTATTACAGCTACTACTATTTCTACT---------------------ACTACTATT------------------ACAACTACTACTATTTCT------------ATTACT------------------ACTATTACAACTACTAC
droWil2 scf2_1100000004909:5791594-5791829 - ACTACTTCTTAAACTT--------TTACGACTTCTAC---TACTTCTACAAGTT-----------------TTACTACTT----C------------------------------------TA-----CAACTTCTACTACTTCTA---------------------------C------GA-----------------CTTCTACAACT---------TATAAAACTTCTACAACTTCAACT------A-------------------CTTCTACA----------------------------------ACTT-----CTA---CAA-CTTCT---ACTACTTC---------TAAAACTTCTACTA---------------------------------------------------------CTT------------CTACTACTTCTACTACTTCTACTACT---------------------TCTACTACT------------------TCTACTACTTCTACTACT------------TCTACT------------------ACTTCTACTACTTCTAC
dp5 4_group1:5090511-5090731 - ACAACCACGACTACAA--------CAACTACGACAAC---AACAACGACGACAACCA-----------------CCACTA----CTACAAC--------------------------------------------------CAC------------------------------------CACTA--------------CTA------------------CA------ACCACACCAACAACGACAACTA-CAACTACTTGCTCGACAACAACAACC----------------------------------AC------------------GACGA---C---------------AACCACTACAACAA---------------------------------------------------------CAA------------CCACGACTACAACAACCACGACTACA---------------------ACCACCACT------------------ACTACAACCACCACTACT------------ACAACC------------------ACACCAACAACGACAAC
droPer2 scaffold_5:2949880-2950109 + ACTACTACTTCTACTG--------CTACTACTACTAC---TAATACTACTTTTA-----------------CTACTACTA----A---------------TACTACT--------------------------ACTACTACTACTA---------------------------T-----------------------------TACTACTACTA------------------------CTACT------C-------------ATA---------------------CTCCTAGTA------------------------CTACCA-------------------------------C------------------------------------------------------------TACTACTATTA------------ATACTACTACTACTACTATTAATACTACTACTAATACTATTAATATAACT------CCTATT------------ACTACTACTAAAACTACTACAAATACATCTAATAAT------------------ACTATAGAAACCTCTAA
droAna3 scaffold_13266:15203006-15203255 - ACAAAAACTCCTCCTA--------CAAAAACTCCTCC---AACAAAAACTCCTC-----------------CTAC-------------------------------------------AAAAA-----CTCC---------TCCT------ACTAAAA------C---------TCCTCCTACTAA-----------------AACTCCTCCTACTA---AAAC------TCCTCCTCCTACA------A-------------CTC---------------------CTCCTACAA------------------------CTCCCCCTAC-TACAAATCCTACTTCTACAGATTCTACA---------A---------------------------------------------CTC---------CTA------------CTTCTACAGATTCTACA------------------------------ACT------CCTACT------------TCTACAGATTCTACAACT------------CCTAGTTCTACAACTTCTACA---ACATT-GAAACCTCAAC
droBip1 scf7180000394737:16150-16349 - ACTACTACGACAACCA--------CGACAACAACCAC---TACCACAACTACAA--------------------------------------------------------------------------CACCTTG---------T---GCCCCTACAA---------------CGACTTCCACTAC-----------------AACGACAACC------------------------------------A-------------------CTACAACAACTACCACAAC-------------------------------------------AACC---------------------------ACTACTA------------------------------------CAACCA---------------CCA------------CGACAACACCTTGTGCT---------------------------------------CCGACAACGACTTCCACAACAACTACAACAACCACT------------ACAACA------------------ACTACAACACCTTGTGC
droKik1 scf7180000302544:1367900-1368153 - TCAACAACGACTCCTA--------AAACTTCTACAGT---GACCACAACTACTC---------------------------------------------------------CTCAACCAACAACAACG--AC---------TCCTAAAACATCTACAG---------------T---G--------------------------------------------------ACCACAACTACTGCA------AA----------GCCCA---------------------CAACGACGACTTCTAAGCCACCAA---------CAA---CGA-CTCCT---AAAACTTCTACAGTGACCACA---------ACTA------------------------CTCCTC------------------------AAC------------CAACAACAACGACTCCTAAAACATCT---------------------ACAGTGACC------------------ACAACTACTGCAAAGTCC------ACAACGACGACT------------------TCTAAGCCACCAACAAC
droFic1 scf7180000450010:2743-2945 - ACTACTGCTACTCTTA--------CTACTACTACTAC---TACTCTTACGACTAATA-----------------CTACTC----T-----------------------------------------------------------T---------------ACAACTAATACTA---CTCTTACTA-----------------------------------------------------CTACTCTTACTA-------------------CTAATACT----------------------------------ACTCTTACA------------------------------------ACTAATACTACTC------------------------------------TTACTA---------------CTA------------CTACTAATACTACTCTTACTACTAAT---------------------ACTATGACT------------------ACTACTACTACTACTACT------------ACTACT------------------ACTTCTACTCTTACTAC
droEle1 scf7180000491212:603924-604143 - ACAACAACGACAACTA--------CAACCACATGTGC---CCCAACAACAACCACCA-----------------CCAC-------AACGACGACAACTACCACAACCACTTGTGCCCCAACAACAACC--------------ACC------------ACAACAACC-----------------------------------------------------------------------------------A----------CTACGA------------------------------------------------------CAA----------------------------------C---------TA------------CTACTACAACAACTA---------------CTA------------CTA---CAACAACAACTACTACAACAACAACTACTACAACC---------------------ACATGTGCTCCAACA------------ACAAC------CACCACC------------ACA---------------------ACGACGACAACTACGA-
droRho1 scf7180000779365:13576-13812 + ACCACCACGACCACAA--------CCACAACCACGAC---CACAACCACAACTA-----------------CAACGACAA----C---------------GACAACCACTTGTGCCCCAATAACCACG--------------ACA------------ACCACAACCACCTG-------------------------------------------------A----------------------------------------GGCTC---------------------CAACTACAA------------------------CTACAACTAC-AACCA---------------------C---AACCA------------------------------CTTGTGCCCCAACAA---------------CAA------------CGACAACAACCACAACCACGACCACG---------------------ACCACCACC------------------ACAACCACAACCACAACT------------ACAACG---ACTTGCTCA------ACAACAACGCCAACAAC
droBia1 scf7180000302378:4553-4785 - ACTTCTACAACGACTA--------CAAAATCTAGTAC---TTCGACTACTCCTACCA-----------------CCAC-------------------------------------------TA-----TCACTTCTACTACTTCTA---------------------------------CCA-----------------CATCGACTACTCCTACAACCTCTAC---------TA---CTTCC------A----------CAA------CTTCTACC----------------------------------ACTT-----CTA---CAA-CTTCG---AGCACTTC---------TACCACGCCTACAA---------------------------------------------------------CCT------------TTACTACTTCTACCACTTCGACTACT---------------------CCTACCACT------------------TCAAGCACCTTGACCACT------------TCGACT------------------ACTTCAACTACTTCTAC
droTak1 scf7180000415257:67654-67874 - ACAACCACTGAGGCAC--------CAACTACGACAAC---AACCACAACCACTT---------------------------------------------------------GTGCACCAACAACCACG--------------ACC---------------ACAACTACCACAAC---CACTTCCA-----------------------------------------------------CTACTACAACAA-------------------GCACTACC----------------------------------ACCACAACA------------------------------------ACAACTACTACCA------------------------------------------CCACAACAACTACAACGA------------CAACCACTACAACATGTGCT------------------------------------CCGACA------------ACTACGACCACCACAACCACAGAGGCA---CCAACC------------------ACGACGACAACCACAAC
droEug1 scf7180000409474:1286496-1286740 + ACCGAAAGTCCAACTT--------CTACTACAGCGATACCAACATCCACTACTA-----------------CTGATTCCA-------------------------------------CGACAA-----CATC---------TACTG------------CCAGCTC---------------TA-----------------CTACGACAACC---------GAAAGTGCAACCACATCTACAGCT------AT----------TCCAA---------------------CATCCACAACGAC----------------------------------TG---------------------A---------AT------------------------------------------CCACAACAACATCTACTGCCAGCTCTACAACGACAACCGAAAGTCCAACTTCTACT---------------------ACAACGGTT------------------CCAACATCCACAACGACT------------GAATCC------------------ACGACAACATCTACTGC
dm3 chrX:5194065-5194297 - TATATTACTGCTCCTA--------CTACTAATACTTC---TATTATTACTACTA-----------------CTCA--C-------------------------------------------TC-----CCATTTCTACTGCTTCTG---------------------------------CTA-----------------CTATTACTACTCTTACTCT-TATAC------TACTACTACTACT------A----CTACTACTACTA------------------------------------------------------CTACTACTAC-TACTA---------------------C---------TA------------------------------------------CTACTACTACTACTACTA------------CTACTACTACTACTACTACTACTACT---------------------ACTACTACT------------------ACTACTGCTACTAATAAT------------AATAAT------------------AATACTACTACTACAAC
droSim2 3r:20734994-20735212 - ACAACTACGACAACCA--------CGACTACCACAAC---CACCACAACTACAACAA-----------------CCAGCTCGTACCACAAC---------TACAACTACTTGTACCCCAACTACTACG--------------ACA------------ACCACGACTACCACAAC---CACCACC-------------------------------------------------------------------------------------------------------------------------------AC------------------GACTA---C---------------AACCACCA---------------------------------------------------------------CAA------------------CGACTACAACCACTACAACA---------ACAACAACTTGTTCC------CCAACA------------ACCACGACTACCACAACA------------ACAACT------------------ACAACAACCACTACAAC
droSec2 scaffold_11428:203-432 - ACTTCTAGTACTACTA--------CTACTAATCCTAC---TACTCCTACTATCT-----------------TTACTT----------------------------------------CTAATA-----CTAC---------TCCTA---------------------------------CTA-----------------ATCCTACTACTCCTACTATCTTTACTTCTAGTACTACTA----------------CTACTTATCCTA------------------------------------------------------CTACTCATAC-TATCT---------------------T---------TA------------------------------------------CTTCTAGTACTACTACTA------------CTAATCCTACTACTCGTACTATCATT---------------------ACTTCTAGT------------------ACTACTACTACTACTCCT------------ACTACT------------------ACTACTACTACTCCTAC
droYak3 3R:25265125-25265348 + ACCACCACAACGACAA--------CAACCACTACAAC---AACGAC------TT---------------------------------------------------------GTGCCCCAACGACAAC--------------GACA------------ACCACAACTACTACAAC---CACCACAA-----------------------------------------------------CTACTACAACGA-------------------CAACAACC----------------------------------ACTACAACA------------------------------------ACGACTTGTGCCC------------------------------------CAACGACAACCACAACTACAACGA------------CCACCACAACTACTACAACCACAACC---------------------------------------------------------ACCACAACTACTACAACT---ACAACC---------ACTACAACAACGACTTGTGCCCCAAC
droEre2 scaffold_4929:15078753-15078988 + ACTACAACAACCTGTA--------CAACTACAACTAC---AACAACCTGTACAC---------------------------------------------------------------CAGAAA-----TTAC---------AACTA---------------------------------CAA-----------------CACCGTGTACACCGGAAATTATAACTACAACAACCTGTA----------------CACAAGAAATTA---------------------CAACTACAA------------------------CAAC----------CT---------------------G---------TA---CAACTACAACTACAACTACAACGA---------------CTA------------CTA------------CAACAACCACAACTACTACTACAACT---------------------ACAACAACT------------------ACAACTACTACTACAACT------------ACAACA------------------ACCTGTACAACTACAAC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
ACTACTACGACGCCTT--------CAACTACGATACC---AATACCGACTCTAC-CA-----------------CCAG------------------------------------------GGT-----T--------------TT------GCGAAAC------G---------TTCTCGTTCTTTAAATTCTGCTTTAGCACGACAACTCCACTGCCCTTA------ACTACACCTTCAACTACTACTA----------CACCTT------------------------------------------------------CAACTACTAC-TACAC---------------CTTCAACTACTACGACGC---------------------------------------------------------CTT------------CAACTACTACAACGCCTTCAACTACG---------------------ACTACGCCT------------------TCAACTACTACTACGCCT------------TCAACT------------------ACGACAACACCTTCAACSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................................................................................................................................................................................................TTTAGCACGACAACTCCACTGCCC...............................................................................................................................................................................................................................................................................................................................................................................2420.501000010
............CCTT--------CAACTACGATACC---AATACCGACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2720.501100000
.................................TACC---AATACCGACTCTAC-C..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.501000010
..............TT--------CAACTACGATACC---AATACCGACTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2620.501100000
........................................AATACCGACTCTAC-CA-----------------CCAG------------------------------------------GGT-----..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.501000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACTACTACTACGCCT------------TCAACT------------------AC...............2660.332200000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTACTACGCCT------------TCAACT------------------ACGACAACACC......2930.331000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCCT------------------TCAACTACTACTACGCC......................................................2360.332000020
....................................................................................................................................................................................................TTAGCACGACAACTCCACTGCCC...............................................................................................................................................................................................................................................................................................................................................................................2330.331000010
...............................................................................................................................................................................................................ACTCCACTGCCCTTA------ACTACACC..............................................................................................................................................................................................................................................................................................................................................................2330.331000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACTACG---------------------ACTACGCCT------------------TCAAC..................................................................23130.314200020
.............................................................................................................................................................................................................................................TCAACTACTACTA----------CACCTT------------------------------------------------------CAAC......................................................................................................................................................................................................................................................................23200.255100040
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACT------------------ACGACAACACCTTCAAC2280.252000020
.........................................................................................................................................................................................................................................................................................................................................................................TACGACGC---------------------------------------------------------CTT------------CAACTACTACAACGCC.................................................................................................................................2790.222000020
.........................................................................................................................................................................................................................................................................T------------------------------------------------------CAACTACTAC-TACAC---------------CTTCAAC....................................................................................................................................................................................................................................23200.204000040
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTACTACAACGCCTTCAAC...........................................................................................................................20100.202000020
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTACTACTACGCCT------------TCAACT------------------.................2360.171100000
.................................................................................................................................................................................................................................................................................................................................................................TCAACTACTACGACGC---------------------------------------------------------CTT------------CAAC.............................................................................................................................................23180.173300000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTACAACGCCTTCAACTACG---------------------..................................................................................................2360.171000010
...............................................................................................................................................................................................................................................................................................................................................................CTTCAACTACTACGACGC---------------------------------------------------------C...............................................................................................................................................................19180.173000030
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTACTACAACGCCTTCAACTACG---------------------ACTAC.............................................................................................2960.171000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACGCCTTCAACTACG---------------------AC................................................................................................2060.171000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTACTACAACGCCTTCAACTACG---------------------ACT...............................................................................................2860.171000010
.................................................................................................................................................................................................................................................................................................................................................................TCAACTACTACGACGC---------------------------------------------------------CTT------------CA...............................................................................................................................................21180.173000030
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTACAACGCCTTCAACTACG---------------------ACT...............................................................................................2460.171000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTACAACGCCTTCAACTACG---------------------..................................................................................................2260.171000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------------------TCAACTACTACTACGCC......................................................1860.171000010
.CTACTACGACGCCTT--------CAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19180.173000030
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACTACTACTACGCCT------------TC.......................................2060.171000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTACTACTACGCCT------------TCAAC....................................2060.171000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACGCCT------------------TCAACTACTACTACGCC......................................................2560.171000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACTACTACTACGCCT------------TCAAC....................................2360.171100000
................................................................................................................................................................................................................................................................................................................................................................TTCAACTACTACGACGC---------------------------------------------------------CTT------------CAACTAC..........................................................................................................................................27180.173200010
.................................................................................................................................................................................................................................................................................................................................................................TCAACTACTACGACGC---------------------------------------------------------CTT------------CAACTA...........................................................................................................................................25180.173300000
....................................................................................................................................................................................................................................................................................................................................................................ACTACTACGACGC---------------------------------------------------------CTT------------CAACT............................................................................................................................................21180.173000030
.....................................................................................................................................................................................................................................................................................................................................................................CTACTACGACGC---------------------------------------------------------CTT------------CAAC.............................................................................................................................................19180.173000030
ACTACTACGACGCCTT--------CAACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21180.173000030
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAACTACG---------------------ACTACGCCT------------------TCAAC..................................................................24130.152100010
.......................................................................................................................................................................................................................................................................................................................................TAC-TACAC---------------CTTCAACTACTACGACGC---------------------------------------------------------................................................................................................................................................................2670.141100000
.....................................................................................................................................................................................................................................................................................................................................ACTAC-TACAC---------------CTTCAACTACTACG.............................................................................................................................................................................................................................2470.141100000
............................................................................................................................................................................................................................................................................................................................................ACAC---------------CTTCAACTACTACGACGC---------------------------------------------------------CTT------------CAA..............................................................................................................................................2870.141000010
..............................................................................................................................................................................................................................................................................................................................................AC---------------CTTCAACTACTACGACGC---------------------------------------------------------C...............................................................................................................................................................2170.141000010
.....................................................................................................................................................................................................................................................................................................................................ACTAC-TACAC---------------CTTCAACTACTACGACG..........................................................................................................................................................................................................................2770.141100000
........................................................................................................................................................................................................................................................................................................................................AC-TACAC---------------CTTCAACTACTACGACGC---------------------------------------------------------CT..............................................................................................................................................................2770.141000010
....................................................................................................................................................................................................................................................................................................................................TACTAC-TACAC---------------CTTCAACTACTACG.............................................................................................................................................................................................................................2570.141100000
............................................................................................................................................................................................................................................................................................................................................ACAC---------------CTTCAACTACTACGACGC---------------------------------------------------------CT..............................................................................................................................................................2470.141000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCCTTCAACTACG---------------------ACTACGCCC------------------.......................................................................2480.131000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACT------------------ACGACAACACCTTCAA.2280.131100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCT------------TCAACT------------------ACGACAACACCTTCA..2480.131000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACT------------------ACGACAACACCTTCAAC2380.131100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT------------TCAACT------------------ACGACAACACC......1990.111000010
....................................................................................................................................................................................................................................................................................................................................................................ACTACTACGACGC---------------------------------------------------------CTT------------CAACTA...........................................................................................................................................22180.112000020
ACTACTACGACGCCTT--------CAACTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22180.112000020
.................................................................................................................................................................................................................................................................................................................................................................TCAACTACTACGACGC---------------------------------------------------------CTT------------CAACT............................................................................................................................................24180.112200000
.........................................................................................................................................................................................................................................................................................................................................................................TACGACGC---------------------------------------------------------CTT------------CAACTACTACAAC....................................................................................................................................2490.111000010
.....................................................................................................................................................................................................................................................................................................................................ACTAC-TACAC---------------CTTCAACTAC.................................................................................................................................................................................................................................20200.102000020
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTACAACGCCTTCAACT..........................................................................................................................19100.101000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTACTACAACGCCTTCA.............................................................................................................................20100.101000010
...................................................................................................................................................................................................................................................................................................................................CTACTAC-TACAC---------------CTTCAAC....................................................................................................................................................................................................................................19200.102000020
............................................................................................................................................................................................................................................................................................................................................................................................................................................T------------CAACTACTACAACGCCTTCA.............................................................................................................................21100.101000010
........................................................................................................................................................................................................................................................................TT------------------------------------------------------CAACTACTAC-TACAC---------------C..........................................................................................................................................................................................................................................18200.102000020
...................................................................................................................................................................................................................................................ACTACTA----------CACCTT------------------------------------------------------CAACTAC...................................................................................................................................................................................................................................................................20200.102000020
..........................................................................................................................................................................................................................................................................................................................................................................................................................................CTT------------CAACTACTACAACGCCA................................................................................................................................20100.101010000
.....................................................................................................................................................................................................................................................TACTA----------CACCTT------------------------------------------------------CAACTACTAC-TACAC---------------C..........................................................................................................................................................................................................................................27200.102200000
.................................................................................................................................................................................................................................................CTACTACTA----------CACCTT------------------------------------------------------CAAC......................................................................................................................................................................................................................................................................19200.102000020
............................................................................................................................................................................................................................................................................................................................................................................................................................................T------------CAACTACTACAACGCCTTCAACTAC........................................................................................................................26100.101100000
................................................................................................................................................................................................................................................................................................................................................................................C---------------------------------------------------------CTT------------CAACTACTACAACGCCTTCA.............................................................................................................................24100.101100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................T------------CAACTACTACAACGCCTTCAAC...........................................................................................................................23100.101100000
................................................................................................................................................................................................................................................................................................................................................................................C---------------------------------------------------------CTT------------CAACTACTACAACGCCTTC..............................................................................................................................23100.101000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................T------------CAACTACTACAACGCCA................................................................................................................................18120.081000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCAACTACG---------------------ACTACGCCT------------------TC.....................................................................22130.081000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACG---------------------ACTACGCCT------------------TCAACT.................................................................20130.081000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACTACG---------------------ACTACGCCT------------------TCAACTA................................................................25130.081100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACTACG---------------------ACTACGCCT------------------TCAACT.................................................................24130.081100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACTACG---------------------ACTACGCCT------------------TCAACTAC...............................................................26130.081000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACTACG---------------------ACTACGCCT------------------TCAA...................................................................22130.081100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACG---------------------ACTACGCCT------------------TCAACTA................................................................20130.081000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACTACG---------------------ACTACGCCT------------------TCA....................................................................21130.081100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAACTACG---------------------ACTACGCCT------------------.......................................................................19130.081000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAACTACG---------------------ACTACGCCT------------------TC.....................................................................21130.081000010
...............................................................................................................................................................................................................................................................................................................................................C---------------CTTCAACTACTACGACGC---------------------------------------------------------CTT------------CA...............................................................................................................................................24160.061000010
...............................................................................................................................................................................................................................................................................................................................................C---------------CTTCAACTACTACGACGC---------------------------------------------------------CTT------------C................................................................................................................................................23160.061100000
.................................................................................................................................................................................................................................................................................................................................................................TCAACTACTACGACGC---------------------------------------------------------CTT------------C................................................................................................................................................20180.061010000
.................................................................................................................................................................................................................................................................................................................................................................TCAACTACTACGACGC---------------------------------------------------------CT..............................................................................................................................................................18180.061000010
...................................................................................................................................................................................................................................................................................................................................................................AACTACTACGACGC---------------------------------------------------------CTT------------CAAC.............................................................................................................................................21180.061000010
ACTACTACGACGCCTT--------CAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20180.061100000
.................................................................................................................................................................................................................................................................................................................................................................TCAACTACTACGACGC---------------------------------------------------------CTT------------CAACTAC..........................................................................................................................................26180.061100000
..TACTACGACGCCTT--------CAACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19180.061000010
....................................................................................................................................................................................................................................................................................................................................................................ACTACTACGACGC---------------------------------------------------------CTT------------CAAC.............................................................................................................................................20180.061100000
...............................................................................................................................................................................................................................................................................................................................................................CTTCAACTACTACGACGC---------------------------------------------------------CTT------------CAACTAC..........................................................................................................................................28180.061000010
......................................................................................................................................................................................................................................................................................................................................................................TACTACGACGC---------------------------------------------------------CTT------------CAACT............................................................................................................................................19180.061000010
.................................................................................................................................................................................................................................................................................................................................................................TCAACTACTACGACGC---------------------------------------------------------CTT------------CAA..............................................................................................................................................22180.061100000
..TACTACGACGCCTT--------CAACTAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21180.061000010
...............................................................................................................................................................................................................................................................................................................................................................CTTCAACTACTACGACGC---------------------------------------------------------CT..............................................................................................................................................................20180.061010000
................................................................................................................................................................................................................................................................................................................................................................TTCAACTACTACGACGC---------------------------------------------------------CT..............................................................................................................................................................19180.061000010
......................................................................................................................................................................................................................................................................................................................................................................TACTACGACGC---------------------------------------------------------CTT------------CAACTAC..........................................................................................................................................21180.061000010
..................................................................................................................................................................................................................................................................................................................................................................CAACTACTACGACGC---------------------------------------------------------CTT------------CA...............................................................................................................................................20180.061100000
..........................................................................................................................................................................................................................................CCTTCAACTACTACTA----------CACC..................................................................................................................................................................................................................................................................................................................................20200.051000010
.........................................................................................................................................................................................................................................................................................................................................C-TACAC---------------CTTCAACTACTAC..............................................................................................................................................................................................................................19200.051000010
....................................................................................................................................................................................................................................ACTACACCTTCAACTACTACTA----------CACC..................................................................................................................................................................................................................................................................................................................................26200.051000010
................................................................................................................................................................................................................................................ACTACTACTA----------CACCTT------------------------------------------------------CAACC.....................................................................................................................................................................................................................................................................21200.051000010
................................................................................................................................................................................................................................................ACTACTACTA----------CACCTT------------------------------------------------------CAACTACTAC-...............................................................................................................................................................................................................................................................26200.051000010
.........................................................................................................................................................................................................................................................................T------------------------------------------------------CAACTACTAC-TACAC---------------CTTCAACTAC.................................................................................................................................................................................................................................26200.051100000
.............................................................................................................................................................................................................................................TCAACTACTACTA----------CACCTT------------------------------------------------------CAACTACT..................................................................................................................................................................................................................................................................27200.051100000
.............................................................................................................................................................................................................................................TCAACTACTACTA----------CACCTT------------------------------------------------------CAACTACTAC-...............................................................................................................................................................................................................................................................29200.051000010
.................................................................................................................................................................................................................................................................................................................................AACTACTAC-TACAC---------------CTTCAACT...................................................................................................................................................................................................................................22200.051000010
.........................................................................................................................................................................................................................................................................T------------------------------------------------------CAACTACTAC-TACAC---------------CTTCAACTA..................................................................................................................................................................................................................................25200.051100000
.................................................................................................................................................................................................................................................CTACTACTA----------CACCTT------------------------------------------------------CAACTACTAC-TAC............................................................................................................................................................................................................................................................28200.051000010
..............................................................................................................................................................................................................................................CAACTACTACTA----------CACCTT------------------------------------------------------C.........................................................................................................................................................................................................................................................................19200.051000010
...................................................................................................................................................................................................................................................ACTACTA----------CACCTT------------------------------------------------------CAACTACTAC-...............................................................................................................................................................................................................................................................23200.051000010
..................................................................................................................................................................................................................................................................................................................................ACTACTAC-TACAC---------------CTTCAACTACTAC..............................................................................................................................................................................................................................26200.051000010
......................................................................................................................................................................................................................................................................CCTT------------------------------------------------------CAACTACTAC-TACAC---------------C..........................................................................................................................................................................................................................................20200.051000010
.......................................................................................................................................................................................................................................................CTA----------CACCTT------------------------------------------------------CAACTACTAC-...............................................................................................................................................................................................................................................................19200.051000010
...........................................................................................................................................................................................................................................CTTCAACTACTACTA----------CACCTT------------------------------------------------------CA........................................................................................................................................................................................................................................................................23200.051000010
.........................................................................................................................................................................................................................................................................T------------------------------------------------------CAACTACTAC-TACAC---------------CTTC.......................................................................................................................................................................................................................................20200.051000010
...............................................................................................................................................................................................................................................AACTACTACTA----------CACCTT------------------------------------------------------CAACT.....................................................................................................................................................................................................................................................................22200.051000010
......................................................................................................................................................................................................................................TACACCTTCAACTACTACTA----------C.....................................................................................................................................................................................................................................................................................................................................21200.051000010
....................................................................................................................................................................................................................................................................CACCTT------------------------------------------------------CAACTACTAC-TACAC---------------CT.........................................................................................................................................................................................................................................23200.051000010
............................................................................................................................................................................................................................................TTCAACTACTACTA----------CACCTT------------------------------------------------------CAACTAC...................................................................................................................................................................................................................................................................27200.051100000
................................................................................................................................................................................................................................................................................................................................CAACTACTAC-TACAC---------------CTTCAACT...................................................................................................................................................................................................................................23200.051000010
.........................................................................................................................................................................................................................................................................T------------------------------------------------------CAACTACTAC-TACAC---------------CTTCAACTACT................................................................................................................................................................................................................................27200.051100000
.......................................................................................................................................................................................................................................................................CTT------------------------------------------------------CAACTACTAC-TACAC---------------CTTCA......................................................................................................................................................................................................................................23200.051000010
...................................................................................................................................................................................................................................................ACTACTA----------CACCTT------------------------------------------------------CAACTACTAC-T..............................................................................................................................................................................................................................................................24200.051100000
..............................................................................................................................................................................................................................................CAACTACTACTA----------CACCTT------------------------------------------------------CAACT.....................................................................................................................................................................................................................................................................23200.051000010
.........................................................................................................................................................................................................................................................A----------CACCTT------------------------------------------------------CAACTACTAC-TACAC---------------CT.........................................................................................................................................................................................................................................24200.051000010
...................................................................................................................................................................................................................................................ACTACTA----------CACCTT------------------------------------------------------CAACTACTAC-TAC............................................................................................................................................................................................................................................................26200.051000010
.............................................................................................................................................................................................................................................TCAACTACTACTA----------CACCTT------------------------------------------------------C.........................................................................................................................................................................................................................................................................20200.051000010
..................................................................................................................................................................................................................................................................................................................................ACTACTAC-TACAC---------------CTTCAACC...................................................................................................................................................................................................................................21200.051000010
......................................................................................................................................................................................................................................................ACTA----------CACCTT------------------------------------------------------CAACTACTAC-TACAC---------------C..........................................................................................................................................................................................................................................26200.051000010
................................................................................................................................................................................................................................................................................................................................CAACTACTAC-TACAC---------------CTTC.......................................................................................................................................................................................................................................19200.051000010
.............................................................................................................................................................................................................................................TCAACTACTACTA----------CACCTT------------------------------------------------------CAACTA....................................................................................................................................................................................................................................................................25200.051100000
.....................................................................................................................................................................................................................................................................................................................................ACTAC-TACAC---------------CTTCAACTACTAC..............................................................................................................................................................................................................................23200.051000010
.........................................................................................................................................................................................................................................................................T------------------------------------------------------CAACTACTAC-TACAC---------------CTTCAACTACTA...............................................................................................................................................................................................................................28200.051100000
.............................................................................................................................................................................................................................................TCAACTACTACTA----------CACCTT------------------------------------------------------CAACTAC...................................................................................................................................................................................................................................................................26200.051100000
...........................................................................................................................................................................................................................................CTTCAACTACTACTA----------CACC..................................................................................................................................................................................................................................................................................................................................19200.051000010
droVir3
AATGCTTCGTCTACTTTCCGCTGCCTACTGCTATTT-----------ACGACT-CTACTACTTCTGTCACTACTCTT-------CTACTAC-----------------------------------------------------T---------------ACAACTACTACTA---CTACAACTA-----------------------------------------------------CTACTACAACTA-------------------CTACTACT----------------------------------ACTACTACA------------------------------------ACTACTACTACTA---------------------------------------------------------CTA------------CTACTACTACTACTACTACTACTACT---------------------ACTACTACT------------------ACTACTACTACTACTACT------------ACAACT------------------ACAACTACTACTACTACSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................TGCTATTT-----------ACGACT-CTACTACTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000100000000000000000000000000000000000
....CTTCGTCTACTTTCCGCTGCCTACTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000010000000
................................ATTT-----------ACGACT-CTACTACTTCTGTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000010
..............................................................................................................................................................................................................................................................................................................................................................................CTA---------------------------------------------------------CTA------------CTACTACTACTACTA..................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTACTACTACTACTACTA............................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................CTACTA---------------------------------------------------------CTA------------CTACTACTACTA.....................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTACTACTACTACTACTA.........................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................CTACTACTA---------------------------------------------------------CTA------------CTACTACTA........................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................CTA------------CTACTACTACTACTACTA...............................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
droGri2
ACTACTACTATTACTA--------CAACAACTATATC---TACCATAACGACTACTA-----------------CTATTA----------------------------------------CTAGTTCT--AC---------TCTTATTACTACTACTG---------------C------TA-----------------------------------------------CTATTACTACTACT------AA----------TATTT---------------------CTACTACTATCTT-------A------------CTA---CTAC-TACTA---------------------C---------TA------------------------------------------CTACTATTACTACTACTA------------CTATTACAGCTACTACTATTTCTACT---------------------ACTACTATT------------------ACAACTACTACTATTTCT------------ATTACT------------------ACTATTACAACTACTACSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
ACTACTTCTTAAACTT--------TTACGACTTCTAC---TACTTCTACAAGTT-----------------TTACTACTT----C------------------------------------TA-----CAACTTCTACTACTTCTA---------------------------C------GA-----------------CTTCTACAACT---------TATAAAACTTCTACAACTTCAACT------A-------------------CTTCTACA----------------------------------ACTT-----CTA---CAA-CTTCT---ACTACTTC---------TAAAACTTCTACTA---------------------------------------------------------CTT------------CTACTACTTCTACTACTTCTACTACT---------------------TCTACTACT------------------TCTACTACTTCTACTACT------------TCTACT------------------ACTTCTACTACTTCTACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
ACAACCACGACTACAA--------CAACTACGACAAC---AACAACGACGACAACCA-----------------CCACTA----CTACAAC--------------------------------------------------CAC------------------------------------CACTA--------------CTA------------------CA------ACCACACCAACAACGACAACTA-CAACTACTTGCTCGACAACAACAACC----------------------------------AC------------------GACGA---C---------------AACCACTACAACAA---------------------------------------------------------CAA------------CCACGACTACAACAACCACGACTACA---------------------ACCACCACT------------------ACTACAACCACCACTACT------------ACAACC------------------ACACCAACAACGACAACSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................................................................................................................................................................................................................................................CAACAACAACC----------------------------------AC------------------GACGA---C---------------.......................................................................................................................................................................................................................................1960.1710000000001
...................................................................................................................................................................................................................................................................TGCTCGACAACAACAACC----------------------------------AC------------------GACGA---C---------------.......................................................................................................................................................................................................................................2660.1710000000001
droPer2
ACTACTACTTCTACTG--------CTACTACTACTAC---TAATACTACTTTTA-----------------CTACTACTA----A---------------TACTACT--------------------------ACTACTACTACTA---------------------------T-----------------------------TACTACTACTA------------------------CTACT------C-------------ATA---------------------CTCCTAGTA------------------------CTACCA-------------------------------C------------------------------------------------------------TACTACTATTA------------ATACTACTACTACTACTATTAATACTACTACTAATACTATTAATATAACT------CCTATT------------ACTACTACTAAAACTACTACAAATACATCTAATAAT------------------ACTATAGAAACCTCTAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
ACAAAAACTCCTCCTA--------CAAAAACTCCTCC---AACAAAAACTCCTC-----------------CTAC-------------------------------------------AAAAA-----CTCC---------TCCT------ACTAAAA------C---------TCCTCCTACTAA-----------------AACTCCTCCTACTA---AAAC------TCCTCCTCCTACA------A-------------CTC---------------------CTCCTACAA------------------------CTCCCCCTAC-TACAAATCCTACTTCTACAGATTCTACA---------A---------------------------------------------CTC---------CTA------------CTTCTACAGATTCTACA------------------------------ACT------CCTACT------------TCTACAGATTCTACAACT------------CCTAGTTCTACAACTTCTACA---ACATT-GAAACCTCAACSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
ACTACTACGACAACCA--------CGACAACAACCAC---TACCACAACTACAA--------------------------------------------------------------------------CACCTTG---------T---GCCCCTACAA---------------CGACTTCCACTAC-----------------AACGACAACC------------------------------------A-------------------CTACAACAACTACCACAAC-------------------------------------------AACC---------------------------ACTACTA------------------------------------CAACCA---------------CCA------------CGACAACACCTTGTGCT---------------------------------------CCGACAACGACTTCCACAACAACTACAACAACCACT------------ACAACA------------------ACTACAACACCTTGTGCSizeHit CountTotal NormTotal
No Reads
droKik1
TCAACAACGACTCCTA--------AAACTTCTACAGT---GACCACAACTACTC---------------------------------------------------------CTCAACCAACAACAACG--AC---------TCCTAAAACATCTACAG---------------T---G--------------------------------------------------ACCACAACTACTGCA------AA----------GCCCA---------------------CAACGACGACTTCTAAGCCACCAA---------CAA---CGA-CTCCT---AAAACTTCTACAGTGACCACA---------ACTA------------------------CTCCTC------------------------AAC------------CAACAACAACGACTCCTAAAACATCT---------------------ACAGTGACC------------------ACAACTACTGCAAAGTCC------ACAACGACGACT------------------TCTAAGCCACCAACAACSizeHit CountTotal NormTotal
No Reads
droFic1
ACTACTGCTACTCTTA--------CTACTACTACTAC---TACTCTTACGACTAATA-----------------CTACTC----T-----------------------------------------------------------T---------------ACAACTAATACTA---CTCTTACTA-----------------------------------------------------CTACTCTTACTA-------------------CTAATACT----------------------------------ACTCTTACA------------------------------------ACTAATACTACTC------------------------------------TTACTA---------------CTA------------CTACTAATACTACTCTTACTACTAAT---------------------ACTATGACT------------------ACTACTACTACTACTACT------------ACTACT------------------ACTTCTACTCTTACTACSizeHit CountTotal NormTotal
No Reads
droEle1
ACAACAACGACAACTA--------CAACCACATGTGC---CCCAACAACAACCACCA-----------------CCAC-------AACGACGACAACTACCACAACCACTTGTGCCCCAACAACAACC--------------ACC------------ACAACAACC-----------------------------------------------------------------------------------A----------CTACGA------------------------------------------------------CAA----------------------------------C---------TA------------CTACTACAACAACTA---------------CTA------------CTA---CAACAACAACTACTACAACAACAACTACTACAACC---------------------ACATGTGCTCCAACA------------ACAAC------CACCACC------------ACA---------------------ACGACGACAACTACGA-SizeHit CountTotal NormTotal
No Reads
droRho1
ACCACCACGACCACAA--------CCACAACCACGAC---CACAACCACAACTA-----------------CAACGACAA----C---------------GACAACCACTTGTGCCCCAATAACCACG--------------ACA------------ACCACAACCACCTG-------------------------------------------------A----------------------------------------GGCTC---------------------CAACTACAA------------------------CTACAACTAC-AACCA---------------------C---AACCA------------------------------CTTGTGCCCCAACAA---------------CAA------------CGACAACAACCACAACCACGACCACG---------------------ACCACCACC------------------ACAACCACAACCACAACT------------ACAACG---ACTTGCTCA------ACAACAACGCCAACAACSizeHit CountTotal NormTotal
No Reads
droBia1
ACTTCTACAACGACTA--------CAAAATCTAGTAC---TTCGACTACTCCTACCA-----------------CCAC-------------------------------------------TA-----TCACTTCTACTACTTCTA---------------------------------CCA-----------------CATCGACTACTCCTACAACCTCTAC---------TA---CTTCC------A----------CAA------CTTCTACC----------------------------------ACTT-----CTA---CAA-CTTCG---AGCACTTC---------TACCACGCCTACAA---------------------------------------------------------CCT------------TTACTACTTCTACCACTTCGACTACT---------------------CCTACCACT------------------TCAAGCACCTTGACCACT------------TCGACT------------------ACTTCAACTACTTCTACSizeHit CountTotal NormTotal
No Reads
droTak1
ACAACCACTGAGGCAC--------CAACTACGACAAC---AACCACAACCACTT---------------------------------------------------------GTGCACCAACAACCACG--------------ACC---------------ACAACTACCACAAC---CACTTCCA-----------------------------------------------------CTACTACAACAA-------------------GCACTACC----------------------------------ACCACAACA------------------------------------ACAACTACTACCA------------------------------------------CCACAACAACTACAACGA------------CAACCACTACAACATGTGCT------------------------------------CCGACA------------ACTACGACCACCACAACCACAGAGGCA---CCAACC------------------ACGACGACAACCACAACSizeHit CountTotal NormTotal
No Reads
droEug1
ACCGAAAGTCCAACTT--------CTACTACAGCGATACCAACATCCACTACTA-----------------CTGATTCCA-------------------------------------CGACAA-----CATC---------TACTG------------CCAGCTC---------------TA-----------------CTACGACAACC---------GAAAGTGCAACCACATCTACAGCT------AT----------TCCAA---------------------CATCCACAACGAC----------------------------------TG---------------------A---------AT------------------------------------------CCACAACAACATCTACTGCCAGCTCTACAACGACAACCGAAAGTCCAACTTCTACT---------------------ACAACGGTT------------------CCAACATCCACAACGACT------------GAATCC------------------ACGACAACATCTACTGCSizeHit CountTotal NormTotal
No Reads
dm3
TATATTACTGCTCCTA--------CTACTAATACTTC---TATTATTACTACTA-----------------CTCA--C-------------------------------------------TC-----CCATTTCTACTGCTTCTG---------------------------------CTA-----------------CTATTACTACTCTTACTCT-TATAC------TACTACTACTACT------A----CTACTACTACTA------------------------------------------------------CTACTACTAC-TACTA---------------------C---------TA------------------------------------------CTACTACTACTACTACTA------------CTACTACTACTACTACTACTACTACT---------------------ACTACTACT------------------ACTACTGCTACTAATAAT------------AATAAT------------------AATACTACTACTACAACSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
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droSim2
ACAACTACGACAACCA--------CGACTACCACAAC---CACCACAACTACAACAA-----------------CCAGCTCGTACCACAAC---------TACAACTACTTGTACCCCAACTACTACG--------------ACA------------ACCACGACTACCACAAC---CACCACC-------------------------------------------------------------------------------------------------------------------------------AC------------------GACTA---C---------------AACCACCA---------------------------------------------------------------CAA------------------CGACTACAACCACTACAACA---------ACAACAACTTGTTCC------CCAACA------------ACCACGACTACCACAACA------------ACAACT------------------ACAACAACCACTACAACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................................................................................................................................................................................................................................AC------------------GACTA---C---------------AACCACCA---------------------------------------------------------------CAA------------------C..........................................................................................................................................2030.33100100000000000000
.......................................................................................................................ACTACTACG--------------ACA------------ACCACGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................2060.17100100000000000000
droSec2
ACTTCTAGTACTACTA--------CTACTAATCCTAC---TACTCCTACTATCT-----------------TTACTT----------------------------------------CTAATA-----CTAC---------TCCTA---------------------------------CTA-----------------ATCCTACTACTCCTACTATCTTTACTTCTAGTACTACTA----------------CTACTTATCCTA------------------------------------------------------CTACTCATAC-TATCT---------------------T---------TA------------------------------------------CTTCTAGTACTACTACTA------------CTAATCCTACTACTCGTACTATCATT---------------------ACTTCTAGT------------------ACTACTACTACTACTCCT------------ACTACT------------------ACTACTACTACTCCTACSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
ACCACCACAACGACAA--------CAACCACTACAAC---AACGAC------TT---------------------------------------------------------GTGCCCCAACGACAAC--------------GACA------------ACCACAACTACTACAAC---CACCACAA-----------------------------------------------------CTACTACAACGA-------------------CAACAACC----------------------------------ACTACAACA------------------------------------ACGACTTGTGCCC------------------------------------CAACGACAACCACAACTACAACGA------------CCACCACAACTACTACAACCACAACC---------------------------------------------------------ACCACAACTACTACAACT---ACAACC---------ACTACAACAACGACTTGTGCCCCAACSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................CCC------------------------------------CAACGACAACCACAACTACAACGA------------C................................................................................................................................................2820.50101000000000
...............................................................................................................................................................................................................................................................................ACAACC----------------------------------ACTACAACA------------------------------------ACGACTTGTG............................................................................................................................................................................................................................2590.11101000000000
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...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACC---------ACTACAACAACGACTTGC........2290.11100100000000
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.........................AACCACTACAAC---AACGAC------TT---------------------------------------------------------GC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2290.11100100000000
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................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTACAACAACGACTTGT........18100.10100100000000
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.............................ACTACAAC---AACGAC------TT---------------------------------------------------------GT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18100.10100100000000
droEre2
ACTACAACAACCTGTA--------CAACTACAACTAC---AACAACCTGTACAC---------------------------------------------------------------CAGAAA-----TTAC---------AACTA---------------------------------CAA-----------------CACCGTGTACACCGGAAATTATAACTACAACAACCTGTA----------------CACAAGAAATTA---------------------CAACTACAA------------------------CAAC----------CT---------------------G---------TA---CAACTACAACTACAACTACAACGA---------------CTA------------CTA------------CAACAACCACAACTACTACTACAACT---------------------ACAACAACT------------------ACAACTACTACTACAACT------------ACAACA------------------ACCTGTACAACTACAACSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................A---CAACTACAACTACAACTACAACGA---------------...............................................................................................................................................................................2511.0010100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCACAACTACTACTACAACC---------------------..................................................................................................2211.0010100000
.............................................................................................................................................................................................................................................................................................................................................................................................CTACAACTACAACGA---------------CTA------------CT..............................................................................................................................................................2011.0010100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAACTACTACTACAACT---------------------AC................................................................................................2111.0010100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCACAACTACTACTACAAC........................................................................................................................2111.0010100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAACT---------------------ACAACAACT------------------AC.....................................................................1921.0020200000
...........................................................................................................................................................................................................................................................................................................................................................................................................................CTA------------CTA------------CAACAACCACAACTACTACTAC...........................................................................................................................2811.0010100000
.....................................................................................................................................................................................................................................................................................................................................................................G---------TA---CAACTACAACTACAACTACAAC................................................................................................................................................................................................2520.5010100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACT------------------ACAACTACTACTACAACT------------ACAAC....................................2720.5010100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACT------------------ACAACTACTACTAC.........................................................2220.5010100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACT------------------ACAACTACTACTACAAC......................................................2520.5010100000
.....................................................................................................................................................................................................................................................................AATTA---------------------CAACTACAA------------------------CAAC----------CT---------------------G---------TA---CAA...................................................................................................................................................................................................................2620.5010100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTACAACT---------------------ACAACAACT------------------ACAACTACC..............................................................2720.5010100000
...........................................................................................................................................................................................................................ATAACTACAACAACCTGTA----------------C...........................................................................................................................................................................................................................................................................................................................................2050.4020200000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAACT---------------------ACAACAACT------------------ACAACC.................................................................2330.3310100000
..............................CAACTAC---AACAACCTGTACAC---------------------------------------------------------------C....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2230.3310100000
.............................................................................................................................................................................................................................................A----------------CACAAGAAATTA---------------------CAACTACAA------------------------C.........................................................................................................................................................................................................................................................................2330.3310100000
...............................................................................................................................................................................................................ACACCGGAAATTATAACTACAACAACC................................................................................................................................................................................................................................................................................................................................................................2740.2510100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAACT------------ACAACA------------------ACCTGTACAAC......2540.2510100000
.................................................................................................................................................A---------------------------------CAA-----------------CACCGTGTACACCGGAAATT...............................................................................................................................................................................................................................................................................................................................................................................2440.2510100000
................................................................................................................................TTAC---------AACTA---------------------------------CAA-----------------CACCGTGTACACCGGA...................................................................................................................................................................................................................................................................................................................................................................................2840.2510001000
..........................................................................................................................A-----TTAC---------AACTA---------------------------------CAA-----------------CACCGTGTACACC......................................................................................................................................................................................................................................................................................................................................................................................2640.2510100000
................................................................................................................................................................................................................CACCGGAAATTATAACTACAACAACCT...............................................................................................................................................................................................................................................................................................................................................................2740.2510100000
..................................................................................................................................................................................................................................CAACAACCTGTA----------------CACAAGAAATTA---------------------CAAC.......................................................................................................................................................................................................................................................................................................2840.2510100000
...................................................................................................................................C---------AACTA---------------------------------CAA-----------------CACCGTGTACACCGG....................................................................................................................................................................................................................................................................................................................................................................................2440.2510100000
...............................................................................................................................................CTA---------------------------------CAA-----------------CACCGTGTACACCGGAAATT...............................................................................................................................................................................................................................................................................................................................................................................2640.2510001000
..........................................................................................................................................................................................................................TATAACTACAACAACCTGT.............................................................................................................................................................................................................................................................................................................................................................1950.2010100000
..........................................................................................................................................................................................................................TATAACTACAACAACCTGTA----------------CAC.........................................................................................................................................................................................................................................................................................................................................2350.2010100000
........................................AACAACCTGTACAC---------------------------------------------------------------CAGAAA-----TTAC---------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2450.2010100000
...................................................CAC---------------------------------------------------------------CAGAAA-----TTAC---------AACTA---------------------------------CAA-----------------C..................................................................................................................................................................................................................................................................................................................................................................................................2250.2010100000
..........................................................................................................................A-----TTAC---------AACTA---------------------------------CAA-----------------CACCGTGT...........................................................................................................................................................................................................................................................................................................................................................................................2150.2010100000
.........................AACTACAACTAC---AACAACCTGTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2350.2010100000
....................................C---AACAACCTGTACAC---------------------------------------------------------------CAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1950.2010001000
..................................................ACAC---------------------------------------------------------------CAGAAA-----TTAC---------AACTA---------------------------------CAA-----------------CACC...............................................................................................................................................................................................................................................................................................................................................................................................2650.2010100000
.......................................................................................................................................................................................................................AATTATAACTACAACAACCTGT.............................................................................................................................................................................................................................................................................................................................................................2250.2010001000
........................................AACAACCTGTACAC---------------------------------------------------------------CAGAAA-----TTAC---------AACT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2850.2010100000
.......................................................................................................................................................................................................................AATTATAACTACAACAACCT...............................................................................................................................................................................................................................................................................................................................................................2050.2010100000
...........................................................................................................................................................................................................................ATAACTACAACAACCTGTA----------------............................................................................................................................................................................................................................................................................................................................................1950.2010100000
........................CAACTACAACTAC---AACAACCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2150.2010100000
...............A--------CAACTACAACTAC---AACAACCTGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2450.2010100000
..........................................................................................................................A-----TTAC---------AACTA---------------------------------CAA-----------------CACCGC.............................................................................................................................................................................................................................................................................................................................................................................................1950.2010100000
.....................................................C---------------------------------------------------------------CAGAAA-----TTAC---------AACTA---------------------------------CAA-----------------CACCGTGTAC.........................................................................................................................................................................................................................................................................................................................................................................................2950.2010100000
........................................................................................................................................................................................................................ATTATAACTACAACAACCTGT.............................................................................................................................................................................................................................................................................................................................................................2150.2010100000
................................................................................................................................TTAC---------AACTA---------------------------------CAA-----------------CACCGTGT...........................................................................................................................................................................................................................................................................................................................................................................................2050.2010001000
...............A--------CAACTACAACTAC---AACAACC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2150.2010100000
.........................................................................................................................AA-----TTAC---------AACTA---------------------------------CAA-----------------CACCGTGT...........................................................................................................................................................................................................................................................................................................................................................................................2250.2010001000
........................CAACTACAACTAC---AACAACCTGTAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2550.2010100000
..............................................CTGTACAC---------------------------------------------------------------CAGAAA-----TTAC---------AACTA---------------------------------.......................................................................................................................................................................................................................................................................................................................................................................................................................2360.1710100000
......ACAACCTGTA--------CAACTACAACTAC---AAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2670.1410100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTACAACT------------ACAACA------------------ACCT.............1970.1410100000
..........................ACTACAACTAC---AACAACCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1970.1410100000
...........................CTACAACTAC---AACAACCTGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2070.1410001000
..........................ACTACAACTAC---AACAACCTGTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2270.1410100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTACAACT------------ACAACA------------------ACCTGTA..........2270.1410100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAACT------------ACAACA------------------ACCTGT...........2070.1410001000
.......................................................................................................................................................................................................................................................................................................A------------------------CAAC----------CT---------------------G---------TA---CAACTACAACTACAAC......................................................................................................................................................................................................2670.1410100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACT------------ACAACA------------------ACCTGTACAAC......22160.1320200000
...............................................................................................................................................................................................................................................................................................CAACTACAA------------------------CAAC----------CT---------------------G---------TA---CAAC..................................................................................................................................................................................................................22160.1320200000
........................................................................................................................................................................................................................................................................TA---------------------CAACTACAA------------------------CAAC----------CT---------------------G---------TA---......................................................................................................................................................................................................................2090.1111000000
.....AACAACCTGTA--------CAACTACAACTAC---..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24180.1120200000
......................................................................................................................................................................................................................................................................................................AA------------------------CAAC----------CT---------------------G---------TA---CAACTACAACTAC.........................................................................................................................................................................................................24180.1120200000
............................TACAACTAC---AACAACCTGTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2090.1111000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAACT------------ACAACA------------------ACCTGTA..........2090.1111000000
................................................................................................................................................................................................................................................................................................................................................................................A---CAACTACAACTACAACTACAAC................................................................................................................................................................................................23130.0810100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACT------------ACAACA------------------ACCTGTACAAC......23160.0610100000
.........................................................................................................................................................................................................................................................................A---------------------CAACTACAA------------------------CAAC----------CT---------------------G---------TA---CAAC..................................................................................................................................................................................................................23160.0610100000
..TACAACAACCTGTA--------CAACTACAACTAC---..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27180.0610100000
...................................................................................................................................................................................................................................................................................................TACAA------------------------CAAC----------CT---------------------G---------TA---CAACTACAACTA..........................................................................................................................................................................................................26180.0610100000
.....................................................................................................................................................................................................................................................................................................CAA------------------------CAAC----------CT---------------------G---------TA---CAACTACAACTAC.........................................................................................................................................................................................................25180.0610100000
...................................................................................................................................................................................................................................................................................................TACAA------------------------CAAC----------CT---------------------G---------TA---CAACTACAACTAC.........................................................................................................................................................................................................27180.0610100000
....CAACAACCTGTA--------CAACTACAACTAC---..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25180.0610100000
..................................................................................................................................................................................................................................................................................................CTACAA------------------------CAAC----------CT---------------------G---------TA---CAACTACAACTAC.........................................................................................................................................................................................................28180.0610100000
.CTACAACAACCTGTA--------CAACTACAACTAC---..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28180.0610100000
..TACAACAACCTGTA--------CAACTACAACTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26180.0610100000
ACTACAACAACCTGTA--------CAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20190.0510100000
...ACAACAACCTGTA--------CAACTACAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23190.0510100000
.................................................................................................................................................................................................................................................................................................ACTACAA------------------------CAAC----------CT---------------------G---------TA---CAAC..................................................................................................................................................................................................................20190.0510100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT------------ACAACA------------------ACCTGTACAACTA....21190.0510100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACT------------ACAACA------------------ACCTGTACAAC......20190.0510100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT------------ACAACA------------------ACCTGTACAACTACAAC25190.0510100000
..................................................................................................................................................................................................................................................................................................CTACAA------------------------CAAC----------CT---------------------G---------TA---CAACTA................................................................................................................................................................................................................21190.0510100000
....................................................................................................................................................................................................................................................................................................ACAA------------------------CAAC----------CT---------------------G---------TA---CAACTACAAC............................................................................................................................................................................................................23190.0510100000
..................................................................................................................................................................................................................................................................................................CTACAA------------------------CAAC----------CT---------------------G---------TA---CAACTACAAC............................................................................................................................................................................................................25190.0510100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACA------------------ACCTGTACAACTACAAC23190.0510100000
.CTACAACAACCTGTA--------CAACTACAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25190.0510100000
.CTACAACAACCTGTA--------CAACTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21190.0510100000
....................................................................................................................................................................................................................................................................................................................................................................................CAACTACAACTACAACTAC...................................................................................................................................................................................................19200.0510100000

Generated: 05/18/2015 at 12:41 AM