dmo_1508

CDS [Dmoj\GI12441-cds]; CDS [Dmoj\GI12441-cds]; exon [dmoj_GLEANR_1245:2]; exon [dmoj_GLEANR_1245:3]; intron [Dmoj\GI12441-in]

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## AATCAAGGTGGTATTGCCACTAGCCGCTGCTGACTTCCCCGATGCTAAGGGTAAGTGCTTAGCGTATGAATCCTATGCGGCAATCTCATGGCAAAGTACTTGGCAGTTTCCCAGTTTTCTATTTTAACATGTAGTTGGAATAAGTAAATGTGGTTTATATATTTCCTTTGCCCAGAGCAGCTGCAACTTATTCAAATTGTTATTATTCTTTGATCTAAGTATTATTATCGTGATATTGTAATGCAGAGAATCAGACTATCCAGTTGATACACCAGAGCCCGAACACGGACTTCAAG ************************************************************************************************************************.......(((..((((...(((.(((((((.....))))))).)))...)))).))).(((((.((((.(((((..((....))..)))))..))))((((((....))))))......)))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	M060 embryo	V110 male body	V049 head	V056 head
............................................................................................................................................................................................................................................................................ACACCAGAGCCCGAACACGGACTT....	24	0	1	2.00	2	2	0	0	0	0
.........................................................................................................................................................................................................................................................................GATACACCAGAGCCCGAACACGGA.......	24	0	1	1.00	1	0	0	1	0	0
......................................................................................................................................................................................................................................................................GTTGATACACCAGAGCCCGAACA...........	23	0	1	1.00	1	0	0	1	0	0
............................................................................................................................................................................................................................ATTATTATCGTGATATTGTAATGCAG..................................................	26	0	1	1.00	1	1	0	0	0	0
.......................................CGATGCTAAGGGTAAGTGCTTAGC.........................................................................................................................................................................................................................................	24	0	1	1.00	1	0	1	0	0	0
..........................................................................................................................TTTAACATGTAGTTGGAATAAGTA......................................................................................................................................................	24	0	1	1.00	1	1	0	0	0	0
...............................................................................................................................................................................................................................ATTATCGTGATATTGTAATGCAG..................................................	23	0	1	1.00	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................CACCAGAGCCCGAACACGGA.......	20	0	1	1.00	1	0	0	1	0	0
...............................................................................................................................................................................................................................................................................CCAGAGCCCGAACACGGACTTCAAG	25	0	1	1.00	1	1	0	0	0	0
............ATTGCCACTAGCCGCTGCT.........................................................................................................................................................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0
......................................................................................................................................................................................................................................................................GTTGATACACCAGAGCCCGAA.............	21	0	1	1.00	1	1	0	0	0	0
...................................................................................................................................................................................................................................................................CCAGTTGATACCCCAGAGCC.................	20	1	1	1.00	1	0	0	0	1	0
.............................................................................CGGCAATCTGATGGCAAA.........................................................................................................................................................................................................	18	1	2	1.00	2	0	1	0	0	1
.................................CTTCCCCGATGCTAAGGA.....................................................................................................................................................................................................................................................	18	1	1	1.00	1	0	0	0	1	0
.......................................................................................ATGGCAAAGTACTTGGCAGTTTCC.........................................................................................................................................................................................	24	0	1	1.00	1	0	1	0	0	0
.................CACTAGCCGCTGCTGACTT....................................................................................................................................................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0
..........................................................................................................................................................................................................................................................................ATACACCAGAGCCCGAACAC..........	20	0	1	1.00	1	1	0	0	0	0
.....................................................................................................................................................................................................................................................GACAATCAGACTATTCTGTT...............................	20	3	13	0.54	7	7	0	0	0	0
...........................................................................................CTTAGTACTGGGCAGTTTC..........................................................................................................................................................................................	19	3	16	0.06	1	0	0	0	0	1
...........................................................................................................................................................................................................................TATTATTATCGTGACAGT...........................................................	18	2	20	0.05	1	0	0	0	1	0

TTAGTTCCACCATAACGGTGATCGGCGACGACTGAAGGGGCTACGATTCCCATTCACGAATCGCATACTTAGGATACGCCGTTAGAGTACCGTTTCATGAACCGTCAAAGGGTCAAAAGATAAAATTGTACATCAACCTTATTCATTTACACCAAATATATAAAGGAAACGGGTCTCGTCGACGTTGAATAAGTTTAACAATAATAAGAAACTAGATTCATAATAATAGCACTATAACATTACGTCTCTTAGTCTGATAGGTCAACTATGTGGTCTCGGGCTTGTGCCTGAAGTTC ************************************************.......(((..((((...(((.(((((((.....))))))).)))...)))).))).(((((.((((.(((((..((....))..)))))..))))((((((....))))))......)))))************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	V049 head	V110 male body	V056 head
.....................................................................................................................................................................................................................................................CTGTTAGTCTGATAAGACAA...............................	20	3	13	1.38	18	13	0	4	1
.......................................................ACGAATCGCATACTTAGGATA............................................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0
......................................................................................................................................................................AAACGGGTCTCGTCGACGTTG.............................................................................................................	21	0	1	1.00	1	0	1	0	0
.....................................................................................................................................................................................................................................................CTGTTAGTCTGATAAGACAAC..............................	21	3	3	0.33	1	1	0	0	0
.........................................................................................................CAAAGGGTCTAGAGATAA.............................................................................................................................................................................	18	2	6	0.17	1	1	0	0	0
......................................................................................GTACCGTTGCAGGAATCGTC..............................................................................................................................................................................................	20	3	11	0.09	1	0	0	1	0

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6500:10619708-10620003 -	dmo_1508	AATCAAGGTGGTATTGCCACTAGCCGCTGCTGACTTCCCCGATGCTAAGGGTAAGT---------------GCTTAGCGTATGAATCCTATGCGGCAA-----------------------------------------------------------TCTCATGGCAAAGTACTTGGCAGTTTCCCAGTTTTCTATTTTA-ACATGTAGTTGGAATAAGTAAATG---TGGTTTATATATTTCCTTTGCC-CAG---AGCAGCTGCAACTTATTCAAATTGTTATTATTCTTTGATCTAAGTATTATTATCGTGATATTG------TAATGCAGAGAATCAGACTATCCAGTTGATACACCAGAGCCCGAACACGGACTTCAAG
droVir3	scaffold_12723:4654606-4654699 -		TTATT---------CATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG---------TT------AAGTATCATTATCGTAATATCG------CTATGCAGAGAATCAGACCATTCAGTTGATCCACAAGAGCCAGAACACGGACTTCAAG
droGri2	scaffold_15126:3603942-3604039 -		ATTCA------ATTTATATTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAATTATAAATAATA-----CCTTTATTG------TTTTGCAGAGAATCAAACTGTTTATTTCATACGCACAAGCCAGAACAGCGACTTCAAG
droWil2	scf2_1100000004884:882214-882564 +		GATCTATATTACTTTCGCTTTGAACGATGAGGAGTATCCGGATGCAAAGGGTATGTGTGACAATTTCCCGTGCAGAGTGCATGATTTTTCTGTAGGAAAAGTTAAAGATAAGTTTGGAACCGCGGTTTCAATATGAAATGCACAGTTCAGAAATAAGTTTAATACATGTGTGCTTAGCAAATTAAT--CTTTCTATGTAAGTCATGTAATTAATTTAAAGTAAGGCATTGGTTTAGG-A-TCTTTTTGCTATAGATTTGGAGATTCGAGTCAATTAA-GTGTTTTT----------------------CTC---ATTTAATCTTTTATTTACAGCCAACCAGACCATTCAACTGCAGCGTACTCGAC---AAGATGATTTTAGA
dp5	4_group4:3544494-3544545 +		T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGAGAACCAAACTCTTCAGCTGATTCATCGCGGCA---GTGAGGAATTCAAG
droPer2	scaffold_10:2572315-2572366 +		T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGAGAACCAAACTCTTCAGCTGATTCATCGCGGCA---GTGAGGAATTCAAG
droAna3	scaffold_12916:9197617-9197666 +		-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGAGGGCCAAACTATTCAGATGTTACATAACAGCA---CTGGCGATTTCAAG
droBip1	scf7180000396535:1756703-1756780 +		GATCTTA-------TAATTATTTTCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAA--------------------------ATTTCAGAGGGCCAAACTATTCAGCTGTTCCATAACAGCA---CTGGCGAATTCAAG
droKik1	scf7180000302660:198569-198730 -		GATTCAAATCCATCTGACTGTGCTTACTGAGGACTTCCCTGATGCCAAGGGTAGGCAA-------------AT-------------------------------------------------------------------------------------------------TATTTGTT-----------------------------------------------------------------------------------AAAATGTTTGTATTGT-GTGTATAT----------------------GAA---ATTTTGTATAATTCTTTCAGAAAACCAAACTATTCAGCTAATTCATCGTGGCA---CTGAGGAATTCAAA
droFic1	scf7180000452378:32370-32425 +		GT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGCAGAAAACCAAACTATTCAGCTCCTTCATAGGGGCG---ATGGTGAGTTTAAG
droEle1	scf7180000490970:1104470-1104532 -		AATCC------ATCTGAATGTGCTGACCGAAGACTTTCCCGATGCCAAGGGTATGCAG-------------GCTTAGAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAT
droRho1	scf7180000779398:7412-7463 +		T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGAAAACCAAACGATTCAACTGATTCATAGGGGTG---CTGGAGAGTTCAAG
droBia1	scf7180000302422:3555331-3555385 -		TAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAGAAAACCAAACGCTTCAGCTGATTCATAGGAGCG---ATGGAGAGTTCAAG
droTak1	scf7180000413920:163590-163696 +		TATTTAACTTTACATTATACTTTTCTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAGATTATTTTACTCATTTGG----ATGTTTGCAGAAAATCAAACCCTTCAGCTGATTCACAGGAGCG---ATGGAGAGTTCAAG
droEug1	scf7180000409752:37461-37518 +		TTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGCAGAAAACCAAACGATTCAACTCATCCATAGGAGCG---ATGGAGATTTTAAG
dm3	chr2L:21576143-21576191 +		AATTC------ATCTGGCTTTGCTGCCTGAGGATTTTCCAGATGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGTAAG
droSim2	2l:20868007-20868061 +		CATCCAAATTCATCTGACTTTGCTGTCCGAGGATTTTCCGGATGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGTAAG
droSec2	scaffold_28:28937-28991 +		CATCCAAATTCATTTGACTTTGCTGTCCGAGGATTTTCCGGATGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGTAAG
droYak3	2R:1289269-1289318 -		-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGAAAATCAAACCGTTCAGCTTATTCATAAAAGCG---ACGGAGAGTTTAAG
droEre2	scaffold_4845:2987588-2987636 -		AATTC------ATCTGACTTTGCTGCCCGAGGACTTTACCGATGCGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGTAAG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

AATCAAGGTGGTATTGCCACTAGCCGCTGCTGACTTCCCCGATGCTAAGGGTAAGT---------------GCTTAGCGTATGAATCCTATGCGGCAA-----------------------------------------------------------TCTCATGGCAAAGTACTTGGCAGTTTCCCAGTTTTCTATTTTA-ACATGTAGTTGGAATAAGTAAATG---TGGTTTATATATTTCCTTTGCC-CAG---AGCAGCTGCAACTTATTCAAATTGTTATTATTCTTTGATCTAAGTATTATTATCGTGATATTG------TAATGCAGAGAATCAGACTATCCAGTTGATACACCAGAGCCCGAACACGGACTTCAAG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
....................................................................................................................................................................................................................................................................................................................................................................ACACCAGAGCCCGAACACGGACTT....	24	1	2.00	2	2	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................GATACACCAGAGCCCGAACACGGA.......	24	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................................................................................................................................................................................................................................................GTTGATACACCAGAGCCCGAACA...........	23	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................................................................................................................................................................................................ATTATTATCGTGATATTG------TAATGCAG..................................................	26	1	1.00	1	1	0	0	0	0	0
.......................................CGATGCTAAGGGTAAGT---------------GCTTAGC..................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
....................................................................................................................................................................................................TTTA-ACATGTAGTTGGAATAAGTA...................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................ATTATCGTGATATTG------TAATGCAG..................................................	23	1	1.00	1	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................CACCAGAGCCCGAACACGGA.......	20	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................................................................................................................................................................................................................................................CCAGAGCCCGAACACGGACTTCAAG	25	1	1.00	1	1	0	0	0	0	0
............ATTGCCACTAGCCGCTGCT.................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................GTTGATACACCAGAGCCCGAA.............	21	1	1.00	1	1	0	0	0	0	0
.................................CTTCCCCGATGCTAAGGA.............................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0
.................................................................................................................................................................ATGGCAAAGTACTTGGCAGTTTCC.......................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
.................CACTAGCCGCTGCTGACTT............................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................ATACACCAGAGCCCGAACAC..........	20	1	1.00	1	1	0	0	0	0	0

droVir3

TTATT---------CATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG---------TT------AAGTATCATTATCGTAATATCG------CTATGCAGAGAATCAGACCATTCAGTTGATCCACAAGAGCCAGAACACGGACTTCAAG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
........................................................................................................................................................................................................................................................................................................................................................................AAGAGCCAGAACACGGACTTC...	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................CAGTTGATCCACAAGAGCCA................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................ATTCAGTTGATCCACAAGAGCCAG...............	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................TCAGTTGATCCACAAGAGCC.................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................GATCCACAAGAGCCAGAACACGGACTT....	27	1	2.00	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................ATCCACAAGAGCCAGAACACGGA.......	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................TTGATCCACAAGAGCCAGAACACGGACT.....	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................CAGTTGATCCACAAGAGCCAGAACAC..........	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................ATCATTATCGTAATATCG------CTATGCAG..................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................CCACAAGAGCCAGAACACGGACTT....	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................ATTCAGTTGATCCACAAGAGCCAGAAC............	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................ACAAGAGCCAGAACACGGAC......	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................GTTGATCCACAAGAGCCAGAACAC..........	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................CCACAAGAGCCAGAACACGGACTTCA..	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................CAGTTGATCCACAAGAGCC.................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................GATCCACAAGAGCCAGAACAC..........	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................TGATCCACAAGAGCCAGAACACGGACT.....	27	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................TCAGTTGATCCACAAGAGCCAGAACACGGACTT....	33	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

ATTCA------ATTTATATTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAATTATAAATAATA-----CCTTTATTG------TTTTGCAGAGAATCAAACTGTTTATTTCATACGCACAAGCCAGAACAGCGACTTCAAG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.................................................................................................................................................................................................................................................................................................................................................................CATACGCACAAGCCAGAAC............	19	1	1.00	1	1	0
........................................................................................................................................................................................................................................................................................................................................................................ACAAGCCAGAACAGCGACTT....	20	1	1.00	1	0	1
......................................................................................................................................................................................................................................................................................................................................................................GCACAAGCCAGAACAGCGACT.....	21	1	1.00	1	1	0
.......................................................................................................................................................................................................................................................................................................................................................................CACAAGCCAGAACAGCGACTT....	21	1	1.00	1	0	1
.......................................................................................................................................................................................................................................................................................................................................................................CACAAGCCAGAACAGCGACT.....	20	1	1.00	1	1	0
..................................................................................................................................................................................................................................................................................................................................................................ATACGCACAAGCCAGAACA...........	19	1	1.00	1	1	0
.....................................................................................................................................................................................................................................................................................................................................................................CGCACAAGCCAGAACAGCGACTTC...	24	1	1.00	1	0	1
..................................................................................................................................................................................................................................................................................................................................................................ATACGCACAAGCCAGAACAGC.........	21	1	1.00	1	1	0

droWil2

GATCTATATTACTTTCGCTTTGAACGATGAGGAGTATCCGGATGCAAAGGGTATGTGTGACAATTTCCCGTGCAGAGTGCATGATTTTTCTGTAGGAAAAGTTAAAGATAAGTTTGGAACCGCGGTTTCAATATGAAATGCACAGTTCAGAAATAAGTTTAATACATGTGTGCTTAGCAAATTAAT--CTTTCTATGTAAGTCATGTAATTAATTTAAAGTAAGGCATTGGTTTAGG-A-TCTTTTTGCTATAGATTTGGAGATTCGAGTCAATTAA-GTGTTTTT----------------------CTC---ATTTAATCTTTTATTTACAGCCAACCAGACCATTCAACTGCAGCGTACTCGAC---AAGATGATTTTAGA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.....................GAACGATGAGGAGTATCCGGAT.....................................................................................................................................................................................................................................................................................................................................................	22	1	6.00	6	0	1	5	0	0
.....................GAACGATGAGGAGTATCCGGATGC...................................................................................................................................................................................................................................................................................................................................................	24	1	6.00	6	0	0	6	0	0
.........................GATGAGGAGTATCCGGATGCAAAGGC.............................................................................................................................................................................................................................................................................................................................................	26	1	4.00	4	0	0	4	0	0
...CTATATTACTTTCGCTTTGAACGAT....................................................................................................................................................................................................................................................................................................................................................................	25	1	4.00	4	4	0	0	0	0
...............CGCTTTGAACGATGAGGA...............................................................................................................................................................................................................................................................................................................................................................	18	1	4.00	4	1	1	0	2	0
........................CGATGAGGAGTATCCGGATGCAAAGGC.............................................................................................................................................................................................................................................................................................................................................	27	1	3.00	3	0	0	3	0	0
..............................................................................................................................................................................................................................................................................................................................................................ACTGCAGCGTACTCGAC---AAGAT.........	22	1	3.00	3	0	0	1	0	2
.........................GATGAGGAGTATCCGGATGC...................................................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	0	2	1	0
...............................GAGTATCCGGATGCAAAGGC.............................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	1	0	1
......................AACGATGAGGAGTATCCGGATGC...................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	2	0	0
..........................................................................................................................................................................................................................................................................................................................................................TTCAACTGCAGCGTACTCGAC---..............	21	1	2.00	2	1	0	1	0	0
.................................................................................................................................................................................................................................................................................................................................................................GCAGCGTACTCGAC---AAGATGATT.....	23	1	2.00	2	0	0	0	0	2
.....................................................................................................................................................................................................................................................................................................................................................GACCATTCAACTGCAGCGTACTC....................	23	1	2.00	2	0	0	2	0	0
...............CGCTTTGAACGATGAGGAG..............................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	1	1	0	0
.....................GAACGATGAGGAGTATCCGGA......................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
..........................ATGAGGAGTATCCGGATGCAAA................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................CAGACCATTCAACTGCAGC..........................	19	1	1.00	1	0	1	0	0	0
.............................AGGAGTATCCGGATGCAAA................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
..............................................................................................................................................................................................................................................................................................................................................................ACTGCAGCGTACTCGAC---AA............	19	1	1.00	1	0	0	0	0	1
.......................................................................................................................................................................................................................................................................................................................................................CCATTCAACTGCAGCGTACTCGAC---..............	24	1	1.00	1	0	0	1	0	0
.ATCTATATTACTTTCGCTTTGAACGA.....................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................CAACTGCAGCGTACTCGAC---AAGAT.........	24	1	1.00	1	0	0	1	0	0
................................................................................................................................................................................................................................................................................................................................................................TGCAGCGTACTCGAC---AAGATGATT.....	24	1	1.00	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................CCATTCAACTGCAGCGTACTCGAC---A.............	25	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................CCAACCAGACCATTCAACTGCAGCGTACT.....................	29	1	1.00	1	0	0	1	0	0
...............CGCTTTGAACGATGAGGAGT.............................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................ACTGCAGCGTACTCGAC---AAGATGAT......	25	1	1.00	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................ATTCAACTGCAGCGTACTCGAC---..............	22	1	1.00	1	0	0	1	0	0
................................................................................................................................................................................................................................................................................................................................................AACCAGACCATTCAACTGCAGCGT........................	24	1	1.00	1	0	0	1	0	0
.............................................................................................................................................................................................................................................................................................................................................................AACTGCAGCGTACTCGAC---AAGAT.........	23	1	1.00	1	0	0	1	0	0
...............................................................................................................................................................................................................................................................................................................................................................CTGCAGCGTACTCGAC---AAGATGA.......	23	1	1.00	1	0	0	1	0	0
...CTATATTACTTTCGCTTTGAACG......................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0
......................AACGATGAGGAGTATCCGG.......................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................ACCATTCAACTGCAGCGTACTCGAC---AAGA..........	29	1	1.00	1	1	0	0	0	0
...................TTGAACGATGAGGAGTATCC.........................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................................ATTCAACTGCAGCGTACTCGAC---AAG...........	25	1	1.00	1	1	0	0	0	0
.....................GAACGATGAGGAGTATCCGG.......................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
.....ATATTACTTTCGCTTTGAACGAT....................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
.............................................................................................................................................................................................................................................................................................................................................................AACTGCAGCGTACTCGAC---AAGATGATT.....	27	1	1.00	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................CATTCAACTGCAGCGTAC......................	18	1	1.00	1	1	0	0	0	0
........................CGATGAGGAGTATCCGGATGC...................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
...............................................................................................................................................................................................................................................................................................................................................CAACCAGACCATTCAACTGC.............................	20	1	1.00	1	0	1	0	0	0
........................CGATGAGGAGTATCCGGATGCAAA................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1
..................................................................................................................................................................................................................................................................................................................................................CCAGACCATTCAACTGCAGCGTACT.....................	25	1	1.00	1	0	0	1	0	0
...........................................................................AGTGCATGATTTTTCTGTAGGAAA.............................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
...CTATATTACTTTCGCTTTGA.........................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................CTGCAGCGTACTCGAC---AAGATGATT.....	25	1	1.00	1	0	0	1	0	0
...................................................................................................................................................................................................................................................................................................................................................................AGCGTACTCGAC---AAGATGATTTTA..	24	1	1.00	1	0	1	0	0	0
....TATATTACTTTCGCTTTGAAC.......................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0
.....................GAACGATGAGGAGTATCC.........................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0
............TTTCGCTTTGAACGATGAGGAG..............................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
...................TTGAACGATGAGGAGTATCCGGAT.....................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
..............................GGAGTATCCGGATGCAAAGGCC............................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................ACTGCAGCGTACTCGAC---A.............	18	1	1.00	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................AACCAGACCATTCAACTGCAGCGTACTC....................	28	1	1.00	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................ATTCAACTGCAGCGTACTCGAC---A.............	23	1	1.00	1	1	0	0	0	0
...CTATATTACTTTCGCTTTGAAC.......................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0
...........CTTTCGCTTTGAACGATGAGGA...............................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
........................................................................................................................................................................................................................................................................................................................................................CATTCAACTGCAGCGTACTC....................	20	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................TCAACTGCAGCGTACTCGAC---AAGATGA.......	27	1	1.00	1	0	1	0	0	0
.........................GATGAGGAGTATCCGGATGCAAAGG..............................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................................................AGACCATTCAACTGCAGCGTACTC....................	24	1	1.00	1	0	0	1	0	0
...CTATATTACTTTCGCTTTGAACGATGAGG................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0

dp5

T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGAGAACCAAACTCTTCAGCTGATTCATCGCGGCA---GTGAGGAATTCAAG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.................................................................................................................................................................................................................................................................................................................................................................GATTCATCGCGGCA---GTGAGGA.......	21	1	8.00	8	0	7	0	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................CTTCAGCTGATTCATCGCGGC..................	21	1	6.00	6	0	6	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................ATTCATCGCGGCA---GTGAGGA.......	20	1	6.00	6	0	6	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................CTGATTCATCGCGGCA---GTGAGGA.......	23	1	5.00	5	0	4	0	0	0	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................TGATTCATCGCGGCA---GTGAGGA.......	22	1	3.00	3	0	3	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................GAACCAAACTCTTCAGCTGATT...........................	22	1	3.00	3	0	3	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................GAACCAAACTCTTCAGCTGATTC..........................	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................CATCGCGGCA---GTGAGGAATTCA..	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................GAACCAAACTCTTCAGCTG..............................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................AACTCTTCAGCTGATTCATCGC.....................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................GCTGATTCATCGCGGCA---GTGAGGAATTC...	28	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................GAACCAAACTCTTCAGCTGAT............................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................CTCTTCAGCTGATTCATC.......................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................GCTGATTCATCGCGGCA---GT............	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................CGCGGCA---GTGAGGAATTCA..	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................CTCTTCAGCTGATTCATCGCGGCA---..............	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................AGAACCAAACTCTTCAGCT...............................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................CATCGCGGCA---GTGAGGAATT....	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................TCAGCTGATTCATCGCGGC..................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................GGCA---GTGAGGAATTC...	15	1	1.00	1	0	0	0	0	0	0	0	0	0	1
.............................................................................................................................................................................................................................................................................................................................................................AGCTGATTCATCGCGGCA---GTGAGGAATTC...	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................GATTCATCGCGGCA---GTGA..........	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................CATCGCGGCA---GTGAGGAATTCAAG	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................AGCTGATTCATCGCGGCA---GTGAGG........	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................AGAACCAAACTCTTCAGCTGATTC..........................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................AGCTGATTCATCGCGGCA---GTGAGGA.......	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................AAACTCTTCAGCTGATTC..........................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................GATTCATCGCGGCA---GTGAGGAATT....	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................CTTCAGCTGATTCATCGCGGCA---GT............	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................CTGATTCATCGCGGCA---GTGAGG........	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................CATCGCGGCA---GTGAGGAA......	18	1	1.00	1	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................CTGATTCATCGCGGCA---GTGAGGAAT.....	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................CGCGGCA---GTGAGGAATTC...	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................GAACCAAACTCTTCAGCTGA.............................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................GAACCAAACTCTTCAGCTGATTCATCGCG....................	29	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................ACCAAACTCTTCAGCTGATTCATCGCGG...................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................GATTCATCGCGGCA---GTGAGGAA......	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................GCTGATTCATCGCGGCA---GTGAGGA.......	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................GCGGCA---GTGAGGAATTCAA.	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGAGAACCAAACTCTTCAGCTGATTCATCGCGGCA---GTGAGGAATTCAAG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.................................................................................................................................................................................................................................................................................................................................................................GATTCATCGCGGCA---GTGAGGA.......	21	1	5.00	5	2	0	0	0	0	3
.................................................................................................................................................................................................................................................................................................................................................ACCAAACTCTTCAGCTGATT...........................	20	1	3.00	3	3	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................ACTCTTCAGCTGATTCATCGCGGCA---GT............	27	1	2.00	2	2	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................GATTCATCGCGGCA---GTGAGG........	20	1	2.00	2	0	1	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................................AAACTCTTCAGCTGATTCATCGCGGC..................	26	1	2.00	2	2	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................GATTCATCGCGGCA---GTGA..........	18	1	2.00	2	2	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................AGAACCAAACTCTTCAGCTG..............................	20	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................CTTCAGCTGATTCATCGCGGCA---GT............	24	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................ATCGCGGCA---GTGAGGAATTCA..	21	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................CATCGCGGCA---GTGAGGAATT....	20	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................GAGAACCAAACTCTTCAGCT...............................	20	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................TTCATCGCGGCA---GTGAGGA.......	19	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................CTTCAGCTGATTCATCGCGGCA---GG............	24	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................AGCTGATTCATCGCGGCA---GTGAGG........	24	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................CGCGGCA---GTGAGGAATTCAAG	21	1	1.00	1	0	0	0	0	1	0

droAna3

-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGAGGGCCAAACTATTCAGATGTTACATAACAGCA---CTGGCGATTTCAAG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.................................................................................................................................................................................................................................................................................................................................................................GTTACATAACAGCA---CTGGC.........	19	1	4.00	4	2	2	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................TAACAGCA---CTGGCGATTT....	18	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................GTTACATAACAGCA---CTGGCGA.......	21	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................TACATAACAGCA---CTGGCGATT.....	21	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................TACATAACAGCA---CTGGCGAT......	20	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................................................................................................................................................................................................................................AGGGCCAAACTATTCAGATGTTACATA.......................	27	1	1.00	1	0	0	0	0	0	1
.................................................................................................................................................................................................................................................................................................................................................................GTTACATAACAGCA---CTGGCGATTTC...	25	1	1.00	1	1	0	0	0	0	0

droBip1

GATCTTA-------TAATTATTTTCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAA--------------------------ATTTCAGAGGGCCAAACTATTCAGCTGTTCCATAACAGCA---CTGGCGAATTCAAG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GATTCAAATCCATCTGACTGTGCTTACTGAGGACTTCCCTGATGCCAAGGGTAGGCAA-------------AT-------------------------------------------------------------------------------------------------TATTTGTT-----------------------------------------------------------------------------------AAAATGTTTGTATTGT-GTGTATAT----------------------GAA---ATTTTGTATAATTCTTTCAGAAAACCAAACTATTCAGCTAATTCATCGTGGCA---CTGAGGAATTCAAA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGCAGAAAACCAAACTATTCAGCTCCTTCATAGGGGCG---ATGGTGAGTTTAAG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AATCC------ATCTGAATGTGCTGACCGAAGACTTTCCCGATGCCAAGGGTATGCAG-------------GCTTAGAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGAAAACCAAACGATTCAACTGATTCATAGGGGTG---CTGGAGAGTTCAAG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAGAAAACCAAACGCTTCAGCTGATTCATAGGAGCG---ATGGAGAGTTCAAG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TATTTAACTTTACATTATACTTTTCTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAGATTATTTTACTCATTTGG----ATGTTTGCAGAAAATCAAACCCTTCAGCTGATTCACAGGAGCG---ATGGAGAGTTCAAG	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGCAGAAAACCAAACGATTCAACTCATCCATAGGAGCG---ATGGAGATTTTAAG	Size	Hit Count	Total Norm	Total
No Reads

dm3

AATTC------ATCTGGCTTTGCTGCCTGAGGATTTTCCAGATGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGTAAG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.................CTTTGCTGCCTGAGGATTTTCCAGATGCA..................................................................................................................................................................................................................................................................................................................................................	29	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................ATTTTCCAGATGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGG.....	18	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...........................TGAGGATTTTCCAGATGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGG....	24	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................TTTGCTGCCTGAGGATTTTCCAGAT.....................................................................................................................................................................................................................................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............GGCTTTGCTGCCTGAGGATTTTCC.........................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................TTTGCTGCCTGAGGATTTTCCAGATG....................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
AATTC------ATCTGGCTTTGCT........................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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droSim2

CATCCAAATTCATCTGACTTTGCTGTCCGAGGATTTTCCGGATGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGTAAG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.................CTTTGCTGTCCGAGGATTTTCCG........................................................................................................................................................................................................................................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................TTTTCCGGATGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGG....	18	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................CGAGGATTTTCCGGATGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG......	22	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............TCTGACTTTGCTGTCCGAGG................................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......ATTCATCTGACTTTGCTGT......................................................................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................CTGTCCGAGGATTTTCCGGA......................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............TCTGACTTTGCTGTCCGA..................................................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............TGACTTTGCTGTCCGAGGATTTTCCGGA......................................................................................................................................................................................................................................................................................................................................................	28	2	0.50	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
................ACTTTGCTGTCCGAGGA...............................................................................................................................................................................................................................................................................................................................................................	17	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.............CTGACTTTGCTGTCCGAGGATA.............................................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
............TCTGACTTTGCTGTCCGG..................................................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............TGACTTTGCTGTCCGAGGAT..............................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................GAGGATTTTCCGGATGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGG.....	22	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........................GTCCGAGGATTTTCCGGATGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGA....	27	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................TTTGCTGTCCGAGGATTTTCCGGA......................................................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
............................GAGGATTTTCCGGATGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG......	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

CATCCAAATTCATTTGACTTTGCTGTCCGAGGATTTTCCGGATGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGTAAG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...................TTGCTGTCCGAGGATTTTCCGGATG....................................................................................................................................................................................................................................................................................................................................................	25	3	0.67	2	0	1	1	0
............................GAGGATTTTCCGGATGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGA....	23	3	0.67	2	0	2	0	0
.......ATTCATTTGACTTTGCTGTCCGAG.................................................................................................................................................................................................................................................................................................................................................................	24	3	0.33	1	0	0	1	0
......AATTCATTTGACTTTGCTGT......................................................................................................................................................................................................................................................................................................................................................................	20	3	0.33	1	0	1	0	0
..TCCAAATTCATTTGACTTTGCTGTC.....................................................................................................................................................................................................................................................................................................................................................................	25	3	0.33	1	1	0	0	0
........TTCATTTGACTTTGCTGT......................................................................................................................................................................................................................................................................................................................................................................	18	3	0.33	1	0	0	1	0
............TTTGACTTTGCTGTCCGAGGATTTTCCG........................................................................................................................................................................................................................................................................................................................................................	28	3	0.33	1	1	0	0	0
..................TTTGCTGTCCGAGGATTTTCCGGA......................................................................................................................................................................................................................................................................................................................................................	24	3	0.33	1	1	0	0	0
..............................GGATTTTCCGGATGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG......	19	3	0.33	1	0	0	0	1
...................TTGCTGTCCGAGGATTTTCCGG.......................................................................................................................................................................................................................................................................................................................................................	22	3	0.33	1	1	0	0	0
...............................GATTTTCCGGATGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGTT..	22	3	0.33	1	0	1	0	0
.......................TGTCCGAGGATTTTCCGG.......................................................................................................................................................................................................................................................................................................................................................	18	3	0.33	1	0	0	1	0
.............TTGACTTTGCTGTCCGAG.................................................................................................................................................................................................................................................................................................................................................................	18	3	0.33	1	0	0	0	1
..................................TTTCCGGATGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGAA...	18	12	0.17	2	0	0	2	0

droYak3

-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGAAAATCAAACCGTTCAGCTTATTCATAAAAGCG---ACGGAGAGTTTAAG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.................................................................................................................................................................................................................................................................................................................................................................TATTCATAAAAGCG---ACGGAGA.......	21	1	5.00	5	1	2	0	0	0	0	2	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................ATTCATAAAAGCG---ACGGAGA.......	20	1	4.00	4	0	1	0	0	0	0	3	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................ATCAAACCGTTCAGCTTATTC..........................	21	1	4.00	4	0	2	0	0	0	0	2	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................GTTCAGCTTATTCATAAAAGCG---ACGGA.........	27	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................TCAGCTTATTCATAAAAGCG---ACGGAG........	26	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3
...............................................................................................................................................................................................................................................................................................................................................AAATCAAACCGTTCAGCTTATT...........................	22	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................TATTCATAAAAGCG---ACGGA.........	19	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................ATTCATAAAAGCG---ACGGAGAGTT....	23	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................ATTCATAAAAGCG---ACGGAG........	19	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................TTATTCATAAAAGCG---ACGGA.........	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................TTATTCATAAAAGCG---ACGGAGAGT.....	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................GTTCAGCTTATTCATAAAAGCG---AC............	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................AAATCAAACCGTTCAGCTTATTCATA.......................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................AAAATCAAACCGTTCAGCTT..............................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................AATCAAACCGTTCAGCTTATT...........................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................ATAAAAGCG---ACGGAGAGT.....	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................ATTCATAAAAGCG---ACGGAGAGT.....	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................AAAATCAAACCGTTCAGCTTATTC..........................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................TTCATAAAAGCG---ACGGAGA.......	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................ATCAAACCGTTCAGCTTATTCAT........................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................CTTATTCATAAAAGCG---ACGGAGA.......	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................ATTCATAAAAGCG---ACGGA.........	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................TATTCATAAAAGCG---ACGGAGAG......	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

AATTC------ATCTGACTTTGCTGCCCGAGGACTTTACCGATGCGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGTAAG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
....C------ATCTGACTTTGCTGCCCGA..................................................................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	2	0	0	0	0	1	0
..............................GGACTTTACCGATGCGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGA....	21	1	3.00	3	0	0	0	0	3	0	0
...........ATCTGACTTTGCTGCCCGAGGAC..............................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	2	0	0	0	0	0	0
.ATTC------ATCTGACTTTGCTGCCCGA..................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	2	0	0	0	0	0	0
.....................GCTGCCCGAGGACTTTACCGATGC...................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
...TC------ATCTGACTTTGCTGCCCGAGGAC..............................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1	0
.................CTTTGCTGCCCGAGGACTTTACCGA......................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
........................GCCCGAGGACTTTACCGATGCGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG......	25	1	1.00	1	0	0	0	0	0	1	0
.ATTC------ATCTGACTTTGCTGCCCGAGGACT.............................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
..............................GGACTTTACCGATGCGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGAA...	22	1	1.00	1	0	0	0	0	0	1	0
...TC------ATCTGACTTTGCTGCCCGAGGACTT............................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
.......................TGCCCGAGGACTTTACCGATGCGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGA....	28	1	1.00	1	0	0	0	0	1	0	0
....................TGCTGCCCGAGGACTTTACCG.......................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
......................CTGCCCGAGGACTTTACCGATG....................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
...TC------ATCTGACTTTGCTGCCCGAGGA...............................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
...................TTGCTGCCCGAGGACTTTACCG.......................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
.......................TGCCCGAGGACTTTACCGATGCGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGAA...	29	1	1.00	1	1	0	0	0	0	0	0
..........................CCGAGGACTTTACCGATGCGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGG.....	24	1	1.00	1	0	0	0	0	0	1	0
.......................TGCCCGAGGACTTTACCGA......................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0
.ATTC------ATCTGACTTTGCTGCCCGAGGA...............................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
...TC------ATCTGACTTTGCTGCCCGAG.................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0
............................GAGGACTTTACCGATGCGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGAA...	24	1	1.00	1	0	0	0	0	1	0	0
................................ACTTTACCGATGCGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGG.....	18	1	1.00	1	1	0	0	0	0	0	0
...................TTGCTGCCCGAGGACTTTACCGATGC...................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
AATTC------ATCTGACTTTGCTGCCCGAG.................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
...............................GACTTTACCGATGCGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGAA...	21	1	1.00	1	0	0	0	0	1	0	0
.ATTC------ATCTGACTTTGCTGCC.....................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
.............................AGGACTTTACCGATGCGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGA....	22	1	1.00	1	0	0	0	0	1	0	0
.....................GCTGCCCGAGGACTTTACCGATGCGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A.......	27	1	1.00	1	0	0	0	0	1	0	0
....C------ATCTGACTTTGCTGCCCGAGGA...............................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
.............CTGACTTTGCTGCCCGAGGACT.............................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0

dmo_1508

scaffold_6500:10619758-10619953 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-17.6	-17.6	-17.3