ID:

dmo_15

 Coordinate:

scaffold_6500:16664517-16664576 +

 Confidence:

Known Ortholog

 Class:

Canonical miRNA

 Genomic Locale:

intergenic

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-35.7 -35.2 -35.1

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GAAAGTGCATATATTAATATTTAAAATTTGTGAAAATTATGCAAGTATCATAAGTAGTAACCATTAAAAGGTCGTGATTTGAACTCAACCTTTTAATTTACTACTTGTGATAAATGCATAGAAATGTCAACAACAACAACGAAAAGCAAGTGAACTCTAA

***********************************.(((((((..(((((((((((((((..((((((((((..(((.......))))))))))))))))))))))))))))..)))))))...************************************ 		Read size # Mismatch Hit Count Total Norm Total M060

embryo

 V041

embryo

 V110

male body		 V049

head

 M046

female body
..................................................TAAGTAGTAACCATTAAAAGGTCG...................................................................................... 24 0 1 14401.00 14401 4028 10366 4 0 3
.......................................................................................ACCTTTTAATTTACTACTTGTG................................................... 22 0 1 4844.00 4844 4814 30 0 0 0
..................................................TAAGTAGTAACCATTAAAAGGTC....................................................................................... 23 0 1 519.00 519 509 10 0 0 0
..................................................TAAGTAGTATCCATTAAGAGGTCG...................................................................................... 24 2 1 269.00 269 77 192 0 0 0
..................................................TAAGTAGTAACCATTAAAAGGTCGT..................................................................................... 25 0 1 252.00 252 202 50 0 0 0
..................................................TAAGTAGTAACCATTAAAAGG......................................................................................... 21 0 1 244.00 244 241 3 0 0 0
.......................................................................................ACATTTTAATTTACTACTTGTG................................................... 22 1 1 205.00 205 205 0 0 0 0
..................................................TAAGTAGTAACCATTAAAAGGTCGC..................................................................................... 25 1 1 201.00 201 191 10 0 0 0
..................................................TGAGTAGTAACCATTAAAAGGTCG...................................................................................... 24 1 1 191.00 191 187 4 0 0 0
..................................................TAAGTAGTAACCATTAAAAGGT........................................................................................ 22 0 1 160.00 160 160 0 0 0 0
..................................................TAAGTAGTAACCATTAAAAGGTCC...................................................................................... 24 1 1 141.00 141 129 12 0 0 0
.......................................................................................AGCTTTTAATTTACTACTTGTG................................................... 22 1 2 137.50 275 275 0 0 0 0
..................................................TAAGTAGTAACCATTAAAAGGTCGTC.................................................................................... 26 1 1 135.00 135 133 2 0 0 0
..................................................TAAGTAGTAACCATTAAACGGTCG...................................................................................... 24 1 1 115.00 115 0 115 0 0 0
..................................................TAAGTAGTAACCATTAACAGGTCG...................................................................................... 24 1 1 112.00 112 0 112 0 0 0
.........................................................................................CTTTTAATTTACTACTTGTGAT................................................. 22 0 1 99.00 99 93 6 0 0 0
.......................................................................................ACCTTTTAATTTACTACTTGT.................................................... 21 0 1 95.00 95 90 5 0 0 0
.......................................................................................ACCTTTTAATTTACTACTTG..................................................... 20 0 1 95.00 95 95 0 0 0 0
................................................CATAAGTAGTAACCATTAAAAGGT........................................................................................ 24 0 1 85.00 85 82 3 0 0 0
.................................................ATAAGTAGTAACCATTAAAAGGTC....................................................................................... 24 0 1 78.00 78 75 3 0 0 0
.......................................................................................ACCTTTTAATTTACTACTTGTGTC................................................. 24 2 1 77.00 77 73 4 0 0 0
..................................................TAAGTAGTAACCATTAAAAGGGCG...................................................................................... 24 1 1 67.00 67 3 64 0 0 0
..................................................TAAGTAGTAACCATTCAAAGGTCG...................................................................................... 24 1 1 63.00 63 1 62 0 0 0
.........................................................................................CTTTTAATTTACTACTTGTG................................................... 20 0 1 60.00 60 59 1 0 0 0
.......................................................................................ACCCTTTAATTTACTACTTGTG................................................... 22 1 1 59.00 59 59 0 0 0 0
........................................................................................CCTTTTAATTTACTACTTGTG................................................... 21 0 1 59.00 59 58 1 0 0 0
..................................................TAAGTAGTAAACATTAAAAGGTCG...................................................................................... 24 1 1 56.00 56 25 31 0 0 0
.......................................................................................ACCGTTTAATTTACTACTTGTG................................................... 22 1 1 55.00 55 55 0 0 0 0
.......................................................................................ACCTTTTAATTTACTACTTGTGC.................................................. 23 1 1 53.00 53 53 0 0 0 0
.................................................TTAAGTAGTATCCATTAAGAGGTC....................................................................................... 24 3 1 51.00 51 46 5 0 0 0
.......................................................................................ACCTTTTAATTTACTACTTGTC................................................... 22 1 1 51.00 51 49 2 0 0 0
..................................................TAAGTAGTAACCATTAAAAGGTCT...................................................................................... 24 1 1 50.00 50 34 16 0 0 0
..................................................TAAGTAGTAACCATTACAAGGTCG...................................................................................... 24 1 1 49.00 49 1 48 0 0 0
..................................................TAAGTAGTCACCATTAAAAGGTCG...................................................................................... 24 1 1 48.00 48 1 47 0 0 0
.......................................................................................ACCTTTTAATTTACTACTTGTA................................................... 22 1 1 47.00 47 47 0 0 0 0
...................................................AAGTAGTAACCATTAAAAGGTCG...................................................................................... 23 0 1 46.00 46 30 15 1 0 0
.......................................................................................ACCTTTTAATTTACTACTTGTGT.................................................. 23 1 1 44.00 44 42 2 0 0 0
.......................................................................................ATCTTTTAATTTACTACTTGTG................................................... 22 1 1 43.00 43 43 0 0 0 0
..................................................TTAGTAGTAACCATTAAAAGGTCG...................................................................................... 24 1 1 43.00 43 42 1 0 0 0
..........................................................................................TTTTAATTTACTACTTGTG................................................... 19 0 1 42.00 42 41 1 0 0 0
..................................................TAAGTAGTAACCATTAAAAGGCCG...................................................................................... 24 1 1 41.00 41 12 29 0 0 0
......................................................................................AACCTTTTAATTTACTACTTGTG................................................... 23 0 1 40.00 40 40 0 0 0 0
..................................................TAAGTAGTATCCATTAAAGGGTTG...................................................................................... 24 3 1 40.00 40 9 31 0 0 0
.......................................................................................TCCTTTTAATTTACTACTTGTG................................................... 22 1 1 36.00 36 36 0 0 0 0
..................................................TAAGTAGTAACCATTAAAAGGTAG...................................................................................... 24 1 1 33.00 33 0 33 0 0 0
..................................................TAAGTAGTAACCATTAAAAGGC........................................................................................ 22 1 1 32.00 32 32 0 0 0 0
...........................................................................................TTTAATTTACTACTTGTG................................................... 18 0 1 32.00 32 31 1 0 0 0
......................................................................................CACCTTTTAATTTACTACTTGTG................................................... 23 1 1 30.00 30 30 0 0 0 0
.......................................................................................ACCTTTTAATTTCCTACTTGTG................................................... 22 1 1 29.00 29 29 0 0 0 0
.........................................................................................CTTTTAATTTACTACTTGTGATC................................................ 23 1 1 29.00 29 28 1 0 0 0
.................................................CTAAGTAGTAACCATTAAAAGGTCG...................................................................................... 25 1 1 29.00 29 16 13 0 0 0
.................................................ATAAGTAGTAACCATTAAAAGGT........................................................................................ 23 0 1 27.00 27 26 1 0 0 0
.......................................................................................ACCATTTAATTTACTACTTGTG................................................... 22 1 1 25.00 25 25 0 0 0 0
..................................................TAAGTAGTAACCATTAAAAGGTTG...................................................................................... 24 1 1 25.00 25 1 24 0 0 0
..................................................TAAGTAGTAACCATTAAAACGTCG...................................................................................... 24 1 1 24.00 24 17 7 0 0 0
..................................................TAAGAAGTAACCATTAAAAGGTCG...................................................................................... 24 1 1 23.00 23 8 15 0 0 0
..................................................TAATTAGTAACCATTAAAAGGTCG...................................................................................... 24 1 1 23.00 23 23 0 0 0 0
..................................................TGAGTAGTAACCATTAAAAGGTC....................................................................................... 23 1 1 23.00 23 23 0 0 0 0
..................................................TAAGTAGTAACCATTTAAAGGTCG...................................................................................... 24 1 1 22.00 22 8 14 0 0 0
..................................................TACGTAGTAACCATTAAAAGGTCG...................................................................................... 24 1 1 22.00 22 20 2 0 0 0
.................................................ATAAGTAGTAACCATTAAAAGGTCC...................................................................................... 25 1 1 21.00 21 20 1 0 0 0
..................................................TAAGCAGTAACCATTAAAAGGTCG...................................................................................... 24 1 1 21.00 21 4 17 0 0 0
..................................................CAAGTAGTAACCATTAAAAGGTCG...................................................................................... 24 1 1 21.00 21 9 12 0 0 0
..................................................TAAGTAGTAACCATTAAAAAGTCG...................................................................................... 24 1 1 20.00 20 3 17 0 0 0
..................................................TAAGTAGTAACCCTTAAAAGGTCG...................................................................................... 24 1 1 19.00 19 9 10 0 0 0
..................................................TAAGTAGTAACCATTAAAAGGACG...................................................................................... 24 1 1 18.00 18 12 6 0 0 0
.......................................................................................ACTTTTTAATTTACTACTTGTG................................................... 22 1 1 18.00 18 18 0 0 0 0
.......................................................................................ACCTTTTCATTTACTACTTGTG................................................... 22 1 1 18.00 18 18 0 0 0 0
..................................................TAAGTAGTAACCATTAAAATGTCG...................................................................................... 24 1 1 18.00 18 13 5 0 0 0
..................................................TAAGGAGTAACCATTAAAAGGTCG...................................................................................... 24 1 1 18.00 18 2 16 0 0 0
................................................CATAAGTAGTAACCATTAAAAGGC........................................................................................ 24 1 1 18.00 18 18 0 0 0 0
..................................................TAAGTAGCAACCATTAAAAGGTCG...................................................................................... 24 1 1 17.00 17 8 9 0 0 0
..................................................TAAGTAGTAACCATTAAGAGGTCG...................................................................................... 24 1 1 16.00 16 1 15 0 0 0
..................................................TAAGTAGTAATCATTAAAAGGTCG...................................................................................... 24 1 1 16.00 16 0 16 0 0 0
..................................................TAAGTAGTAACCATTAAAGGGTCG...................................................................................... 24 1 1 16.00 16 0 16 0 0 0
..................................................TGAGTAGTAACCATTAAAAGGT........................................................................................ 22 1 1 15.00 15 15 0 0 0 0
..........................................................................................TTTTAATTTACTACTTGTGATT................................................ 22 1 1 15.00 15 12 3 0 0 0
..................................................TAAGTAGTGACCATTAAAAGGTCG...................................................................................... 24 1 1 15.00 15 0 15 0 0 0
................................................CATAAGTAGTAACCATTAAAAGG......................................................................................... 23 0 1 15.00 15 15 0 0 0 0
..................................................TAAGTAGTAACCATTAAAAGGTCA...................................................................................... 24 1 1 15.00 15 2 13 0 0 0
..................................................TAAGTAGTAACCATTAAAAGTCG....................................................................................... 23 3 1 15.00 15 15 0 0 0 0
.........................................................................................CTTTTAATTTACTACTTGTGAC................................................. 22 1 1 15.00 15 15 0 0 0 0
..................................................TAAGTAGTAAACATTAAAAGGGCG...................................................................................... 24 2 1 15.00 15 0 15 0 0 0
.......................................................................................ACCTTTTAATTTACTACTTGC.................................................... 21 1 1 14.00 14 14 0 0 0 0
..................................................TAAGTGGTAACCATTAAAAGGTCG...................................................................................... 24 1 1 14.00 14 4 10 0 0 0
..................................................TAAGTAGTAACAATTAAAAGGTCG...................................................................................... 24 1 1 14.00 14 5 9 0 0 0
..................................................TAAGTAGTAACCGTTAAAAGGTCG...................................................................................... 24 1 1 13.00 13 1 12 0 0 0
..................................................TAAGTAGTAACCATTAGAAGGTCG...................................................................................... 24 1 1 12.00 12 3 9 0 0 0
..................................................GAAGTAGTAACCATTAAAAGGTCG...................................................................................... 24 1 1 12.00 12 12 0 0 0 0
..................................................TGAGTAGTAACCATTAAAAGG......................................................................................... 21 1 1 12.00 12 12 0 0 0 0
..................................................TAAGTAGTAACCATTAAAAGGTCGA..................................................................................... 25 1 1 12.00 12 7 5 0 0 0
.........................................................................................CGTTTAATTTACTACTTGTGAT................................................. 22 1 1 12.00 12 12 0 0 0 0
.......................................................................................ACCTTTTAATTTACTACTTGGG................................................... 22 1 1 12.00 12 12 0 0 0 0
..................................................TAGGTAGTAACCATTAAAAGGTCG...................................................................................... 24 1 1 12.00 12 5 7 0 0 0
.........................................................................................CGTTTAATTTACTACTTGTG................................................... 20 1 1 12.00 12 12 0 0 0 0
.......................................................................................ACCTTGTAATTTACTACTTGTG................................................... 22 1 1 11.00 11 11 0 0 0 0
.........................................................................................CTTTTAATTTACTACTTGTGATT................................................ 23 1 1 11.00 11 11 0 0 0 0
..................................................TAAGTAGGAACCATTAAAAGGTCG...................................................................................... 24 1 1 11.00 11 0 11 0 0 0
..................................................TAAGTAGTAACCATTAAAAGTTCG...................................................................................... 24 1 1 11.00 11 6 5 0 0 0
..................................................AAAGTAGTAACCATTAAAAGGTCG...................................................................................... 24 1 1 10.00 10 8 2 0 0 0
..................................................TAAGTAGTAACCATTACACGGTCG...................................................................................... 24 2 1 10.00 10 0 10 0 0 0
.......................................................................................ACCTTTTAATTTACTACTTGTT................................................... 22 1 1 10.00 10 8 2 0 0 0
..................................................TAAGTAGTCACCATTAAACGGTCG...................................................................................... 24 2 1 10.00 10 0 10 0 0 0
..................................................TAAGTAGTAACCATTAAAAGGTCGTGA................................................................................... 27 0 1 10.00 10 8 2 0 0 0
....................................................AGTAGTAACCATTAAAAGGTCG...................................................................................... 22 0 1 10.00 10 1 9 0 0 0
.......................................................................................ACCTTTTAATTTACTACT....................................................... 18 0 1 10.00 10 10 0 0 0 0
..................................................TAAGTAGTAACCATCAAAAGGTCG...................................................................................... 24 1 1 10.00 10 0 10 0 0 0
..................................................TAAGTATTAACCATTAAAAGGTCG...................................................................................... 24 1 1 10.00 10 8 2 0 0 0
.......................................................................................ACCTTTTAATTTACTACTTGTGTCC................................................ 25 3 1 10.00 10 8 2 0 0 0
..................................................TAAGTAGTAGCCATTAAAAGGTCG...................................................................................... 24 1 1 9.00 9 1 8 0 0 0
..................................................TAAGTAGTAACCACTAAAAGGTCG...................................................................................... 24 1 1 9.00 9 1 8 0 0 0
..................................................TAAGTAGTAACTATTAAAAGGTCG...................................................................................... 24 1 1 9.00 9 1 8 0 0 0
..................................................TAAGTAGTACCCATTAAAAGGTCG...................................................................................... 24 1 1 9.00 9 0 9 0 0 0
.................................................AGAAGTAGTAACCATTAAAAGGTC....................................................................................... 24 1 1 8.00 8 8 0 0 0 0
.......................................................................................ACCTTTTAATTTACTACTTGTGA.................................................. 23 0 1 8.00 8 8 0 0 0 0
..................................................TAAGTAGTAAGCATTAAAAGGTCG...................................................................................... 24 1 1 8.00 8 0 8 0 0 0
..................................................TAAGTAGTAACCATTGAAAGGTCG...................................................................................... 24 1 1 8.00 8 0 8 0 0 0
..................................................TAAGTAGTAACCATTAAAAGGTT....................................................................................... 23 1 1 8.00 8 8 0 0 0 0
..................................................TAAGTAGTAACCAGTAAAAGGTCG...................................................................................... 24 1 1 8.00 8 1 7 0 0 0
..................................................TAAGTAGTAACCATTAATAGGTCG...................................................................................... 24 1 1 8.00 8 2 6 0 0 0
.......................................................................................ACGTTTTAATTTACTACTTGTG................................................... 22 1 1 8.00 8 8 0 0 0 0
..................................................TGAGTAGTAACCATTAAAAGGTCC...................................................................................... 24 2 1 7.00 7 7 0 0 0 0
..................................................TAAGTAGTAACCATTATAAGGTCG...................................................................................... 24 1 1 7.00 7 0 7 0 0 0
..................................................TAAGTAGTAACCATTCAACGGTCG...................................................................................... 24 2 1 7.00 7 0 7 0 0 0
..................................................TAAGTAGTAACCATTAAAAGGTGG...................................................................................... 24 1 1 7.00 7 4 3 0 0 0
..................................................TAAGTAGTAACCATTAAAAGGTCGTT.................................................................................... 26 1 1 7.00 7 7 0 0 0 0
......................................................................................AACCTTTTAATTTACTACTTGT.................................................... 22 0 1 7.00 7 7 0 0 0 0
..................................................TAAGTAGTATCCATTAAGAGGTC....................................................................................... 23 2 1 7.00 7 6 1 0 0 0
......................................................................................CACTTTTTAATTTACTACTTGTG................................................... 23 2 1 7.00 7 7 0 0 0 0
.......................................................................................ACCTTTTAATTTACTACC....................................................... 18 1 1 7.00 7 7 0 0 0 0
.......................................................................................ACCTTTTAATTTACTACCTGTG................................................... 22 1 1 7.00 7 7 0 0 0 0
.......................................................................................ACATTTTAATTTACTACTTGT.................................................... 21 1 1 7.00 7 7 0 0 0 0
..................................................TAAGTACTAACCATTAAAAGGTCG...................................................................................... 24 1 1 7.00 7 3 4 0 0 0
........................................................................................CGTTTTAATTTACTACTTGTG................................................... 21 1 1 7.00 7 7 0 0 0 0
..................................................TAAGTAGTAACCATTAAAAGGAC....................................................................................... 23 1 1 6.00 6 6 0 0 0 0
.........................................................................................CTTCTAATTTACTACTTGTGAT................................................. 22 1 1 6.00 6 6 0 0 0 0
................................................CGTAAGTAGTAACCATTAAAAGGT........................................................................................ 24 1 1 6.00 6 6 0 0 0 0
..................................................TAAGTAGTATCCATTAAGAGGTCC...................................................................................... 24 3 1 6.00 6 6 0 0 0 0
..................................................TCAGTAGTAACCATTAAAAGGTCG...................................................................................... 24 1 1 6.00 6 0 6 0 0 0
..........................................................................................TTTTAATTTACTACTTGTGATC................................................ 22 1 1 6.00 6 6 0 0 0 0
..................................................TAAGTAGTAACCATTTAAAGGGCG...................................................................................... 24 2 1 6.00 6 0 6 0 0 0
.......................................................................TCGTGATTTGAACTCAACC...................................................................... 19 0 1 6.00 6 6 0 0 0 0
..................................................TAAGTAGTTACCATTAAAAGGTCG...................................................................................... 24 1 1 6.00 6 0 6 0 0 0
..................................................TGAGTAGTAACCATTAAAAGGTCGT..................................................................................... 25 1 1 6.00 6 6 0 0 0 0
.................................................CTAAGTAGTAACCATTAAAAGGTC....................................................................................... 24 1 1 6.00 6 6 0 0 0 0
..................................................TAAGTAGTCACCATTAACAGGTCG...................................................................................... 24 2 1 6.00 6 0 6 0 0 0
.......................................................................................GCCTTTTAATTTACTACTTGTG................................................... 22 1 1 6.00 6 6 0 0 0 0
..................................................TAATTAGTAACCATTAAAAGGTC....................................................................................... 23 1 1 5.00 5 5 0 0 0 0
..................................................TAAGTAGTAACCATTAAAAG.......................................................................................... 20 0 1 5.00 5 3 2 0 0 0
..................................................TAAGTAGTAACCATTAAGAGGTTG...................................................................................... 24 2 1 5.00 5 0 2 0 3 0
..................................................TAAGTAGTAACCATTAACCGGTCG...................................................................................... 24 2 1 5.00 5 0 5 0 0 0
.........................................................................................CTTGTAATTTACTACTTGTGAT................................................. 22 1 1 5.00 5 5 0 0 0 0
..................................................TAAGTAGTAACCATTAAAAGCTCG...................................................................................... 24 1 1 5.00 5 1 4 0 0 0
...................................................AAGTAGTAACCATTAAAAGGTC....................................................................................... 22 0 1 5.00 5 5 0 0 0 0
..................................................TAAGTAGTAACCATTAAATGGTCG...................................................................................... 24 1 1 5.00 5 2 3 0 0 0
................................................CATAAGTAGTAACCATTAAAAGGTC....................................................................................... 25 0 1 5.00 5 5 0 0 0 0
..................................................TAAGTAGTCACCATTCAAAGGTCG...................................................................................... 24 2 1 5.00 5 0 5 0 0 0
..................................................TAAGTAGTAACCATTAAAAGGTCGTG.................................................................................... 26 0 1 5.00 5 4 1 0 0 0
..................................................TAAGTAGTAACCATTCACAGGTCG...................................................................................... 24 2 1 5.00 5 0 5 0 0 0
.......................................................................................ACCTCTTAATTTACTACTTGTG................................................... 22 1 1 5.00 5 5 0 0 0 0
..................................................TAAGTAGTAAACATTTAAAGGGCG...................................................................................... 24 3 1 5.00 5 0 5 0 0 0
......................................................................................CGCCTTTTAATTTACTACTTGTG................................................... 23 2 1 5.00 5 5 0 0 0 0
..................................................TGAGTAGTAACCATTAAAAGGTCGC..................................................................................... 25 2 1 5.00 5 5 0 0 0 0
.........................................................................................CGTTTAATTTACTACTTGTGAC................................................. 22 2 1 5.00 5 5 0 0 0 0
..................................................TAAATAGTAACCATTAAAAGGTCG...................................................................................... 24 1 1 5.00 5 1 4 0 0 0
..................................................TAAGTAGTAACCATTAAAA........................................................................................... 19 0 1 4.00 4 2 2 0 0 0
..................................................TAAGTAGTAACCATTAAAAGGTCGG..................................................................................... 25 1 1 4.00 4 4 0 0 0 0
..................................................TAAGTAGTAACCATTAAAAGGTCCC..................................................................................... 25 2 1 4.00 4 4 0 0 0 0
..................................................TAAGTAGTAACCATTAAAAGGTCGGC.................................................................................... 26 2 1 4.00 4 4 0 0 0 0
..................................................TAAGTAGTAACCATTAAAAGGTCGCT.................................................................................... 26 2 1 4.00 4 4 0 0 0 0
..................................................TAAGTAGAAACCATTAAAAGGTCG...................................................................................... 24 1 1 4.00 4 2 2 0 0 0
..........................................................................................TGTTAATTTACTACTTGTG................................................... 19 1 1 4.00 4 4 0 0 0 0
...........................................................................................TGTAATTTACTACTTGTG................................................... 18 1 1 4.00 4 4 0 0 0 0
......................................................................................AACTTTTTAATTTACTACTTGTG................................................... 23 1 1 4.00 4 4 0 0 0 0
................................................CACAAGTAGTAACCATTAAAAGGT........................................................................................ 24 1 1 4.00 4 4 0 0 0 0
..................................................TAAGTAGTAACCATTACAAGGTCGT..................................................................................... 25 1 1 4.00 4 0 4 0 0 0
..................................................TGAGTAGTATCCATTAAGAGGTCG...................................................................................... 24 3 1 4.00 4 4 0 0 0 0
.........................................................................................CTTTTAATTTACTACTTGTGA.................................................. 21 0 1 4.00 4 3 1 0 0 0
.................................................ATAAGTAGTAACCATTAAAAGGTCT...................................................................................... 25 1 1 4.00 4 4 0 0 0 0
..................................................TAAGTAGTAACCTTTAAAAGGTCG...................................................................................... 24 1 1 4.00 4 0 4 0 0 0
..................................................TAAGTAGTATCCATTAAGAGGTCGC..................................................................................... 25 3 1 4.00 4 4 0 0 0 0
..........................................................................................TTTTAATTTACTACTTGTGAT................................................. 21 0 1 4.00 4 3 1 0 0 0
..................................................TAAGTAGGAACCATTTAAAGGGCG...................................................................................... 24 3 1 4.00 4 0 4 0 0 0
.......................................................................................ACCTATTAATTTACTACTTGTG................................................... 22 1 1 3.00 3 3 0 0 0 0
..................................................GAAGTAGTATCCATTAAGAGGTCG...................................................................................... 24 3 1 3.00 3 2 1 0 0 0
..................................................TAAGTAGTAACCATTAAAAGGTCGTCC................................................................................... 27 2 1 3.00 3 3 0 0 0 0
........................................................................................CCTTTTAATTTACTACTTGTGA.................................................. 22 0 1 3.00 3 3 0 0 0 0
.......................................................................................ACCTTTTAATTTACTACTTGCG................................................... 22 1 1 3.00 3 3 0 0 0 0
..................................................TAAGTAGTAACCATTAAAAGGATG...................................................................................... 24 2 1 3.00 3 0 3 0 0 0
.................................................TTAAGTAGTAACCATTAAAAGGTCG...................................................................................... 25 1 1 3.00 3 3 0 0 0 0
..................................................TTAGTAGTAACCATTAAAAGGTC....................................................................................... 23 1 1 3.00 3 3 0 0 0 0
..................................................TAAGTAGGAACCATTAAAAGGGCG...................................................................................... 24 2 1 3.00 3 0 3 0 0 0
..................................................TAAGTAGTAACCATTAAAAGGGAG...................................................................................... 24 2 1 3.00 3 0 3 0 0 0
......................................................TAGTAACCATTAAAAGGTCG...................................................................................... 20 0 1 3.00 3 1 2 0 0 0
..................................................TAAGTAGTATCCATTAAGAGGT........................................................................................ 22 2 1 3.00 3 1 2 0 0 0
.......................................................................................ACACTTTAATTTACTACTTGTG................................................... 22 2 1 3.00 3 3 0 0 0 0
..................................................TAAGTAGTAACCATTACCAGGTCG...................................................................................... 24 2 1 3.00 3 0 3 0 0 0
...................................................AAGTAGTAACCATTAAAAGGTCGC..................................................................................... 24 1 1 3.00 3 3 0 0 0 0
........................................................................................ACCTTTAATTTACTACTTGTG................................................... 21 2 1 3.00 3 3 0 0 0 0
..................................................TAAGTAGTAACCCTTAAACGGTCG...................................................................................... 24 2 1 3.00 3 0 3 0 0 0
.........................................................................................CGTTTAATTTACTACTTGTGATC................................................ 23 2 1 3.00 3 3 0 0 0 0
..................................................TAAGTAGTAACCATTCCAAGGTCG...................................................................................... 24 2 1 3.00 3 0 3 0 0 0
..................................................TAAGTAGGAAACATTAAAAGGTCG...................................................................................... 24 2 1 3.00 3 0 3 0 0 0
.........................................................................................CTTTTAATTTACTACTTGTGTC................................................. 22 2 1 3.00 3 3 0 0 0 0
..................................................TAAGTAGTATCCATTAAGCGGTCG...................................................................................... 24 3 1 3.00 3 0 3 0 0 0
.......................................................................................ACCTTTTAATTTACTACTTTTG................................................... 22 1 1 3.00 3 3 0 0 0 0
..................................................TAAGTAGTAACCATTAAAAAGTAG...................................................................................... 24 2 1 3.00 3 0 3 0 0 0
..................................................TAATTAGTAACCATTAAAAGG......................................................................................... 21 1 1 3.00 3 3 0 0 0 0
..................................................TAAGTAATAACCATTAAAAGGTCG...................................................................................... 24 1 1 3.00 3 2 1 0 0 0
..................................................TTAGTAGTAACCATTAAAAGGT........................................................................................ 22 1 1 3.00 3 3 0 0 0 0
...................................................TAGTAGTAACCATTAAAAGGTCG...................................................................................... 23 1 1 3.00 3 0 3 0 0 0
..................................................TAAGTAGTAAACATTAAAAGGACG...................................................................................... 24 2 1 3.00 3 0 3 0 0 0
.......................................................................................ACCTTTTACTTTACTACTTGTG................................................... 22 1 1 3.00 3 3 0 0 0 0
..................................................TAAGTAGTAACCTTTAAAGGGTCG...................................................................................... 24 2 1 3.00 3 0 0 2 1 0
................................................CGTAAGTAGTAACCATTAAAAGGC........................................................................................ 24 2 1 3.00 3 3 0 0 0 0
..................................................TAAGTAGTCACCCTTAAAAGGTCG...................................................................................... 24 2 1 3.00 3 1 2 0 0 0
.......................................................................................ACCTTTTAATCTACTACTTGTG................................................... 22 1 1 3.00 3 3 0 0 0 0
..................................................TAAGTAGTATCCATTAAGAGG......................................................................................... 21 2 1 3.00 3 3 0 0 0 0
.......................................................AGTAACCATTAAAAGGTCG...................................................................................... 19 0 1 3.00 3 0 3 0 0 0
..................................................TAATTAGTAACCATTAAAAGGTCC...................................................................................... 24 2 1 3.00 3 3 0 0 0 0
..................................................TAATTAGTAACCATTAAAAGGTCGT..................................................................................... 25 1 1 3.00 3 3 0 0 0 0
..................................................TAAGTAGTAACCATTAAAAGGTCGCC.................................................................................... 26 2 1 3.00 3 2 1 0 0 0
..................................................TAAGTAGTAAACATTAAAAGG......................................................................................... 21 1 1 3.00 3 3 0 0 0 0
.......................................................................................ACCTTTTAATTTACTACTTGTCC.................................................. 23 2 1 3.00 3 3 0 0 0 0
.................................................AGAAGTAGTAACCATTAAAAGGT........................................................................................ 23 1 1 3.00 3 3 0 0 0 0
..................................................TAAGTAGTAACCCTTAAAAGGTCT...................................................................................... 24 2 1 3.00 3 2 1 0 0 0
.......................................................................................AGCTTTTAATTTACTACTTGTA................................................... 22 2 2 2.50 5 5 0 0 0 0
.................................................ATAAGTAGTAACCATTAAAAGGTCA...................................................................................... 25 1 1 2.00 2 0 2 0 0 0
.................................................AGAAGTAGTAACCATTAAAAGGTCC...................................................................................... 25 2 1 2.00 2 2 0 0 0 0
........................................................................................CCCTTTAATTTACTACTTGTG................................................... 21 1 1 2.00 2 2 0 0 0 0
..........................................................................................TTTTAATTTACTACTTGTGATTC............................................... 23 2 1 2.00 2 2 0 0 0 0
.......................................................................................ACCTTTTAAATTACTACTTGTG................................................... 22 1 1 2.00 2 2 0 0 0 0
..................................................TAAGTGGTAACCATTAAAAGGTCGTC.................................................................................... 26 2 1 2.00 2 2 0 0 0 0
..................................................TAAGTAGTCACCATTAAAAGGTCT...................................................................................... 24 2 1 2.00 2 0 2 0 0 0
..................................................TAAGTAGTAACCATTTAAAGGCCG...................................................................................... 24 2 1 2.00 2 1 1 0 0 0
..................................................AAAGTAGTAACCATTAAAAGGTC....................................................................................... 23 1 1 2.00 2 2 0 0 0 0
..................................................TAAGTAGTAACCATTAAACGGGCG...................................................................................... 24 2 1 2.00 2 0 2 0 0 0
....................................................................................AGCACCTTTTAATTTACTACTTGTG................................................... 25 3 1 2.00 2 2 0 0 0 0
..........................................................................................TTTTAATTTACTACTTGTGA.................................................. 20 0 1 2.00 2 2 0 0 0 0
..................................................TAATTAGTAACCATTAAAAGGTCGC..................................................................................... 25 2 1 2.00 2 2 0 0 0 0
..................................................TAAGTAGTAACCATTCAAAGGTCC...................................................................................... 24 2 1 2.00 2 0 2 0 0 0
.......................................................................................ACCTTTTAATTTACTACGTGTG................................................... 22 1 1 2.00 2 2 0 0 0 0
..................................................TAAGTAGTAACCATTAAAAGGGT....................................................................................... 23 2 1 2.00 2 2 0 0 0 0
......................................................................................CACCTTTTAATTTACTACTTGTGC.................................................. 24 2 1 2.00 2 2 0 0 0 0
..................................................TAAGTAGTAACCATTAAAAGGTCGTCT................................................................................... 27 2 1 2.00 2 2 0 0 0 0
..................................................TAAGTAGTAACCCTTAAAAGGC........................................................................................ 22 2 1 2.00 2 2 0 0 0 0
........................................................................................CCTTTTAATTTACTACTTGTGATC................................................ 24 1 1 2.00 2 1 1 0 0 0
..................................................TAAGTAGTAACCATTCACCGGTCG...................................................................................... 24 3 1 2.00 2 0 2 0 0 0
.............................................................................................................ATAAATGCATAGAAATGTCAACAA........................... 24 0 1 2.00 2 2 0 0 0 0
..................................................TAAGAAGTAAACATTAAAAGGTCG...................................................................................... 24 2 1 2.00 2 0 2 0 0 0
..................................................TAAGTAGTAACCATTAAAAGGTCGAC.................................................................................... 26 2 1 2.00 2 2 0 0 0 0
......................................................................................ATCTTTTTAATTTACTACTTGTG................................................... 23 2 1 2.00 2 2 0 0 0 0
..................................................TAAGTTGTAACCATTAAAAGGTCG...................................................................................... 24 1 1 2.00 2 1 1 0 0 0
..................................................TAAGTAGTAACCATTAAA............................................................................................ 18 0 1 2.00 2 1 1 0 0 0
..................................................TAAGGAGTAACCATTAAAAGGGCG...................................................................................... 24 2 1 2.00 2 0 2 0 0 0
......................................................................................AACCTTTTAATTTACTACTTGTC................................................... 23 1 1 2.00 2 2 0 0 0 0
.......................................................................................ACCTTTTAATTTACTACTGGTG................................................... 22 1 1 2.00 2 2 0 0 0 0
..................................................TAAGTAGTAAACATTAAAAGGTCC...................................................................................... 24 2 1 2.00 2 2 0 0 0 0
........................................................................................CCTTTTAATTTACTACTTGTGAC................................................. 23 1 1 2.00 2 2 0 0 0 0
..................................................TAAGTAGTAACCATTAAAAGGGCT...................................................................................... 24 2 1 2.00 2 0 2 0 0 0
.......................................................................................ACCTTTTAATTTACTACTTGTGCTCC............................................... 26 3 1 2.00 2 2 0 0 0 0
..................................................TAAGTAGTAACCATTAAAATGTCGT..................................................................................... 25 1 1 2.00 2 2 0 0 0 0
..................................................TAAGTAGTAACCATTAAACGCTCG...................................................................................... 24 2 1 2.00 2 0 2 0 0 0
..................................................TAAGTAGTATACATTAAGAGGTCG...................................................................................... 24 3 1 2.00 2 1 1 0 0 0
..................................................TAAGTAGTAACCCTTACAAGGTCG...................................................................................... 24 2 1 2.00 2 0 2 0 0 0
....................................................................................ATCACCTTTTAATTTACTACTTGTG................................................... 25 3 1 2.00 2 2 0 0 0 0
........................................................................................CCTTTTAATTTACTACTTGTGC.................................................. 22 1 1 2.00 2 2 0 0 0 0
.......................................................................................ACATTTTCATTTACTACTTGTG................................................... 22 2 1 2.00 2 2 0 0 0 0
...................................................AAGTAGTAACCATTAAAAGGTCGT..................................................................................... 24 0 1 2.00 2 2 0 0 0 0
.....................................................................................TCACCTTTTAATTTACTACTTGTG................................................... 24 2 1 2.00 2 2 0 0 0 0
..................................................TAAGTAGTAACCATTCAAAGGGCG...................................................................................... 24 2 1 2.00 2 0 2 0 0 0
..................................................TACGTAGTAACCATTAAAAGG......................................................................................... 21 1 1 2.00 2 2 0 0 0 0
..................................................TAAGTAGTATCCATTAAGGGGTCG...................................................................................... 24 3 1 2.00 2 0 2 0 0 0
..................................................TAAGAAGTAACCATTAAAAGGGCG...................................................................................... 24 2 1 2.00 2 0 2 0 0 0
.................................................CTATGTAGTAACCATTAAAAGGTCG...................................................................................... 25 2 1 2.00 2 2 0 0 0 0
..................................................TAAGTAGTATCCATTTAAAGGTCG...................................................................................... 24 2 1 2.00 2 0 2 0 0 0
.................................................ATAAGTAGTAACCATTAAAAGG......................................................................................... 22 0 1 2.00 2 2 0 0 0 0
..................................................TAAGTAGTAACCATTAAAAGATCG...................................................................................... 24 1 1 2.00 2 0 2 0 0 0
........................................................................................CTTTTTAATTTACTACTTGTG................................................... 21 1 1 2.00 2 2 0 0 0 0
.......................................................................................ACCTTTTAATTTACTACTTGTCCC................................................. 24 3 1 2.00 2 2 0 0 0 0
..................................................TAAGTAGTAAACATTAAAAGGGCT...................................................................................... 24 3 1 2.00 2 0 2 0 0 0
..................................................TGAGTAGTAACCATTAAAAGGTCT...................................................................................... 24 2 1 2.00 2 2 0 0 0 0
..................................................TAAGTAGTAACCATTAAAAGGG........................................................................................ 22 1 1 2.00 2 2 0 0 0 0
..................................................TAAGTAGGAACCATTGAAAGGTCG...................................................................................... 24 2 1 2.00 2 0 2 0 0 0
................................................CATAAGTAGTAACCATTAAAAG.......................................................................................... 22 0 1 2.00 2 2 0 0 0 0
..................................................TAAGTATTAACCCTTAAAAGTTCG...................................................................................... 24 3 1 2.00 2 2 0 0 0 0
..................................................TGAGTAGTAACCATTAAAAGGTCGTCC................................................................................... 27 3 1 2.00 2 2 0 0 0 0
..................................................TAAGTAGTAACCCTTAAAAGGGCG...................................................................................... 24 2 1 2.00 2 0 2 0 0 0
..................................................TAAGTAGTAACAATTAAAAGGTTG...................................................................................... 24 2 1 2.00 2 0 2 0 0 0
.........................................................................................CGTTTAATTTACTACTTGTGA.................................................. 21 1 1 2.00 2 2 0 0 0 0
.......................................................................................ACATTTTAATTTACTACTTGTGC.................................................. 23 2 1 2.00 2 2 0 0 0 0
..................................................GAAGTAGTAACCATTAAAAGGTCGC..................................................................................... 25 2 1 2.00 2 2 0 0 0 0
.......................................................................................ACCTTTTAATTTACTACTTGTGAA................................................. 24 1 1 2.00 2 2 0 0 0 0
...............................................ATCTAAGTAGTAACCATTAAAAGGTCG...................................................................................... 27 3 1 2.00 2 2 0 0 0 0
.................................................ATAAGTAGTAACCATTAAAAGGTCG...................................................................................... 25 0 1 2.00 2 0 2 0 0 0
..................................................TAAGTAGTAAACATTAAAAGGTCT...................................................................................... 24 2 1 2.00 2 0 2 0 0 0
..................................................TAAGTAGTAACCATTAAAAGGAAG...................................................................................... 24 2 1 2.00 2 0 2 0 0 0
..................................................TAAGTAGTAGCCATTAAACGGTCG...................................................................................... 24 2 1 2.00 2 0 2 0 0 0
..................................................TAATTAGTAACCATTAAAAGGTCGTC.................................................................................... 26 2 1 2.00 2 2 0 0 0 0
..................................................TAAGTAGTACCCATTAACAGGTCG...................................................................................... 24 2 1 2.00 2 0 2 0 0 0
.......................................................................................TCCTTTTAATTTACTACTTGTGTC................................................. 24 3 1 2.00 2 2 0 0 0 0

Anti-sense strand reads

CTTTCACGTATATAATTATAAATTTTAAACACTTTTAATACGTTCATAGTATTCATCATTGGTAATTTTCCAGCACTAAACTTGAGTTGGAAAATTAAATGATGAACACTATTTACGTATCTTTACAGTTGTTGTTGTTGCTTTTCGTTCACTTGAGATT

************************************.(((((((..(((((((((((((((..((((((((((..(((.......))))))))))))))))))))))))))))..)))))))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total V110

male body
.........................................................................CACTAAACTTGCGTTGGAA.................................................................... 19 1 1 1.00 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droMoj3 scaffold_6500:16664467-16664626 + dmo_15 confident GAAAGTGCATATATTAATATTTAAAATTTGTGA-----AAATTATGCAAGTATCATAAGTAGTAACCATTAAAAGGTCGTGATTTGA-----ACTCAACCTTTTAATTTACTACTTGTGATAAATGCATAGAAATGTCAACAACAAC--------------------------------AACGAAAAGCAAGTGAACTCTAA
droVir3 scaffold_12723:5044030-5044160 - dvi-mir-968 Known_mirbase GAGTGTGATTCTTTTTTTTTTTT----TAATTT-----CAATTATACATGTGCCTTAAGTAGTAACCATTAAGAGGTTGTTGTTAGATTTA-AATCCACCTTTTAATGTACTACTTATGACAAATGCATAG-------------------------------------------------------------CAAATCAGCA
droGri2 scaffold_15126:8057353-8057490 - dgr_81 candidate AGATGTGTTATTATTAAATATTATATTGATTAA-----GAATAATGTCTATGCCTTAAGTAGTAACCATTAAAAGGTTGTTTTTGTAAATTATACCGACCTTTTAGTGTACTACTTAAAGTACATTCATTG-----------------------------------------------------------CAAGTCGACGAA
droWil2 scf2_1100000004909:3831483-3831540 - AAATTTATTAAAATGTGAGCCA------AACGAAAATTGAGCAAAACCAATGCCAAAAAT------------------------------------------------------------------------------------------------------------------------------------------GTGA
droBip1 scf7180000395221:6236-6383 - CATTATGCTTACATATGTATTTATC-TTTATTA-----AAATTAAACAAACATTATAAGTATG------------TAAATTTTTCAAATGA-GG-----------------------------------GGAAAATTAAACAATAAGATTAAATTGTAATAACAAAAAAATTAAACAATTAAGAAAAAACATTAAATTATAA
droFic1 scf7180000451466:9477-9610 + CATAATGTTTACATCTGTATTTAAC-TTTATTA-----AAATTAAACAAACATTATAAGTATGAACATTCATTTGTACGTTTTTCAAATTA-AA-----------------------------------GGAAAATTAAACAATAACATAAAATTATAACAGC--------------------------GAGAGAAACACAA
droEug1 scf7180000409452:319759-319835 - AAATAT--------------------------------------TGCGGATTCTTTAAGTAGTAACCATTAAAGGGTTGTTCCTATAAGAT-AATCAACCTTTTGATGTACTACTT--------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
GAAAGTGCATATATTAATATTTAAAATTTGTGA-----AAATTATGCAAGTATCATAAGTAGTAACCATTAAAAGGTCGTGATTTGA-----ACTCAACCTTTTAATTTACTACTTGTGATAAATGCATAGAAATGTCAACAACAAC--------------------------------AACGAAAAGCAAGTGAACTCTAASizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
.......................................................TAAGTAGTAACCATTAAAAGGTCG...........................................................................................................................24114401.00144013103660040284
.................................................................................................ACCTTTTAATTTACTACTTGTG...................................................................................2214844.0048440300048140
.......................................................TAAGTAGTAACCATTAAAAGGTC............................................................................................................................231519.00519010005090
.......................................................TAAGTAGTAACCATTAAAAGGTCGT..........................................................................................................................251252.00252050002020
.......................................................TAAGTAGTAACCATTAAAAGG..............................................................................................................................211244.0024403002410
.......................................................TAAGTAGTAACCATTAAAAGGTCGC..........................................................................................................................251201.00201010001910
.......................................................TAAGTAGTAACCATTAAAAGGT.............................................................................................................................221160.0016000001600
.......................................................TAAGTAGTAACCATTAAAAGGTCC...........................................................................................................................241141.00141012001290
.......................................................TAAGTAGTAACCATTAAAAGGTCGTC.........................................................................................................................261135.0013502001330
...................................................................................................CTTTTAATTTACTACTTGTGAT.................................................................................22199.00990600930
.................................................................................................ACCTTTTAATTTACTACTTGT....................................................................................21195.00950500900
.................................................................................................ACCTTTTAATTTACTACTTG.....................................................................................20195.00950000950
.....................................................CATAAGTAGTAACCATTAAAAGGT.............................................................................................................................24185.00850300820
......................................................ATAAGTAGTAACCATTAAAAGGTC............................................................................................................................24178.00780300750
.................................................................................................ACCTTTTAATTTACTACTTGTGTC.................................................................................24177.00770400730
...................................................................................................CTTTTAATTTACTACTTGTG...................................................................................20160.00600100590
..................................................................................................CCTTTTAATTTACTACTTGTG...................................................................................21159.00590100580
.................................................................................................ACCTTTTAATTTACTACTTGTGC..................................................................................23153.00530000530
.................................................................................................ACCTTTTAATTTACTACTTGTC...................................................................................22151.00510200490
.......................................................TAAGTAGTAACCATTAAAAGGTCT...........................................................................................................................24150.005001600340
.................................................................................................ACCTTTTAATTTACTACTTGTA...................................................................................22147.00470000470
........................................................AAGTAGTAACCATTAAAAGGTCG...........................................................................................................................23146.004601500301
.................................................................................................ACCTTTTAATTTACTACTTGTGT..................................................................................23144.00440200420
....................................................................................................TTTTAATTTACTACTTGTG...................................................................................19142.00420100410
................................................................................................AACCTTTTAATTTACTACTTGTG...................................................................................23140.00400000400
.......................................................TAAGTAGTAACCATTAAAAGGC.............................................................................................................................22132.00320000320
.....................................................................................................TTTAATTTACTACTTGTG...................................................................................18132.00320100310
...................................................................................................CTTTTAATTTACTACTTGTGATC................................................................................23129.00290100280
......................................................ATAAGTAGTAACCATTAAAAGGT.............................................................................................................................23127.00270100260
......................................................ATAAGTAGTAACCATTAAAAGGTCC...........................................................................................................................25121.00210100200
.....................................................CATAAGTAGTAACCATTAAAAGGC.............................................................................................................................24118.00180000180
....................................................................................................TTTTAATTTACTACTTGTGATT................................................................................22115.00150300120
.....................................................CATAAGTAGTAACCATTAAAAGG..............................................................................................................................23115.00150000150
.......................................................TAAGTAGTAACCATTAAAAGGTCA...........................................................................................................................24115.00150130020
.......................................................TAAGTAGTAACCATTAAAAGTCG............................................................................................................................23115.00150000150
...................................................................................................CTTTTAATTTACTACTTGTGAC.................................................................................22115.00150000150
.................................................................................................ACCTTTTAATTTACTACTTGC....................................................................................21114.00140000140
.......................................................TAAGTAGTAACCATTAAAAGGTCGA..........................................................................................................................25112.0012050070
...................................................................................................CTTTTAATTTACTACTTGTGATT................................................................................23111.00110000110
.................................................................................................ACCTTTTAATTTACTACTTGTT...................................................................................22110.0010020080
.......................................................TAAGTAGTAACCATTAAAAGGTCGTGA........................................................................................................................27110.0010020080
.........................................................AGTAGTAACCATTAAAAGGTCG...........................................................................................................................22110.0010090010
.................................................................................................ACCTTTTAATTTACTACT.......................................................................................18110.00100000100
.................................................................................................ACCTTTTAATTTACTACTTGTGTCC................................................................................25110.0010020080
.................................................................................................ACCTTTTAATTTACTACTTGTGA..................................................................................2318.008000080
.......................................................TAAGTAGTAACCATTAAAAGGTT............................................................................................................................2318.008000080
.......................................................TAAGTAGTAACCATTAAAAGGTCGTT.........................................................................................................................2617.007000070
................................................................................................AACCTTTTAATTTACTACTTGT....................................................................................2217.007000070
.................................................................................................ACCTTTTAATTTACTACC.......................................................................................1817.007000070
....................................................................................................TTTTAATTTACTACTTGTGATC................................................................................2216.006000060
............................................................................TCGTGATTTGA-----ACTCAACC......................................................................................................1916.006000060
.......................................................TAAGTAGTAACCATTAAAAG...............................................................................................................................2015.005020030
........................................................AAGTAGTAACCATTAAAAGGTC............................................................................................................................2215.005000050
.....................................................CATAAGTAGTAACCATTAAAAGGTC............................................................................................................................2515.005000050
.......................................................TAAGTAGTAACCATTAAAAGGTCGTG.........................................................................................................................2615.005010040
.......................................................TAAGTAGTAACCATTAAAA................................................................................................................................1914.004020020
.......................................................TAAGTAGTAACCATTAAAAGGTCGG..........................................................................................................................2514.004000040
.......................................................TAAGTAGTAACCATTAAAAGGTCCC..........................................................................................................................2514.004000040
.......................................................TAAGTAGTAACCATTAAAAGGTCGGC.........................................................................................................................2614.004000040
.......................................................TAAGTAGTAACCATTAAAAGGTCGCT.........................................................................................................................2614.004000040
...................................................................................................CTTTTAATTTACTACTTGTGA..................................................................................2114.004010030
......................................................ATAAGTAGTAACCATTAAAAGGTCT...........................................................................................................................2514.004000040
....................................................................................................TTTTAATTTACTACTTGTGAT.................................................................................2114.004010030
.......................................................TAAGTAGTAACCATTAAAAGGTCGTCC........................................................................................................................2713.003000030
..................................................................................................CCTTTTAATTTACTACTTGTGA..................................................................................2213.003000030
...........................................................TAGTAACCATTAAAAGGTCG...........................................................................................................................2013.003020010
........................................................AAGTAGTAACCATTAAAAGGTCGC..........................................................................................................................2413.003000030
...................................................................................................CTTTTAATTTACTACTTGTGTC.................................................................................2213.003000030
............................................................AGTAACCATTAAAAGGTCG...........................................................................................................................1913.003030000
.......................................................TAAGTAGTAACCATTAAAAGGTCGCC.........................................................................................................................2613.003010020
.................................................................................................ACCTTTTAATTTACTACTTGTCC..................................................................................2313.003000030
......................................................ATAAGTAGTAACCATTAAAAGGTCA...........................................................................................................................2512.002020000
....................................................................................................TTTTAATTTACTACTTGTGATTC...............................................................................2312.002000020
....................................................................................................TTTTAATTTACTACTTGTGA..................................................................................2012.002000020
.......................................................TAAGTAGTAACCATTAAAAGGGT............................................................................................................................2312.002000020
.......................................................TAAGTAGTAACCATTAAAAGGTCGTCT........................................................................................................................2712.002000020
..................................................................................................CCTTTTAATTTACTACTTGTGATC................................................................................2412.002010010
.......................................................................................................................ATAAATGCATAGAAATGTCAACAA...........................................................2412.002000020
.......................................................TAAGTAGTAACCATTAAAAGGTCGAC.........................................................................................................................2612.002000020
.......................................................TAAGTAGTAACCATTAAA.................................................................................................................................1812.002010010
................................................................................................AACCTTTTAATTTACTACTTGTC...................................................................................2312.002000020
..................................................................................................CCTTTTAATTTACTACTTGTGAC.................................................................................2312.002000020
..................................................................................................CCTTTTAATTTACTACTTGTGC..................................................................................2212.002000020
........................................................AAGTAGTAACCATTAAAAGGTCGT..........................................................................................................................2412.002000020
......................................................ATAAGTAGTAACCATTAAAAGG..............................................................................................................................2212.002000020
.................................................................................................ACCTTTTAATTTACTACTTGTCCC.................................................................................2412.002000020
.......................................................TAAGTAGTAACCATTAAAAGGG.............................................................................................................................2212.002000020
.....................................................CATAAGTAGTAACCATTAAAAG...............................................................................................................................2212.002000020
.................................................................................................ACCTTTTAATTTACTACTTGTGAA.................................................................................2412.002000020
......................................................ATAAGTAGTAACCATTAAAAGGTCG...........................................................................................................................2512.002020000
droVir3
GAGTGTGATTCTTTTTTTTTTTT----TAATTT-----CAATTATACATGTGCCTTAAGTAGTAACCATTAAGAGGTTGTTGTTAGATTTA-AATCCACCTTTTAATGTACTACTTATGACAAATGCATAG-------------------------------------------------------------CAAATCAGCASizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.......................................................TAAGTAGTAACCATTAAGAGGTTG...........................................................................................................................24130837.00308370071310070143622112111402404000031194274113090115028000001048191945553042360001312864972602110002200013121
.................................................................................................ACCTTTTAATGTACTACTTATG...................................................................................221979.009790005780000000000000000000000000000000710000000114121319152432272520100642100000882200000016192426
.......................................................TAAGTAGTAACCATTAAGAGGTTT...........................................................................................................................241776.00776000700000100000000000000000000000001000000000000000101000007650000000000000000000
.......................................................TAAGTAGTAACCATTAAGAGGTT............................................................................................................................231183.001830007400000000000000000000000010010012100100000100114734200017610000000000000000001
.......................................................TAAGTAGTAACCATTAAGAGGT.............................................................................................................................221161.00161000360000000000000000000000000000000000000000023610101391019110002920000000000000000100
.......................................................TAAGTAGTAACCATTAAGAGGTTGT..........................................................................................................................25169.0069000150000000000000000000000000000001320000000000100030310002360000000000000001001
.......................................................TAAGTAGTAACCATTAAGAGG..............................................................................................................................21160.0060000120000000000000000000000000000000000000000011114553530001160000000100000000001
.......................................................TAAGTAGTAACCATTAAGAGGTTC...........................................................................................................................24144.004400010000000000000000000000000000000000000000000000000000000430000000000000000000
.....................................................CTTAAGTAGTAACCATTAAGAGGT.............................................................................................................................24144.00440002000000000000000000000000000000000000000104314284335000400000000000000000000
........................................................AAGTAGTAACCATTAAGAGGTTG...........................................................................................................................23136.003600230000000000000000000000000000000100000000000000000000000300000000000000000000
.......................................................TAAGTAGTAACCATTAAGAGGTTA...........................................................................................................................24133.003300000000001000000000000000000000000000000000000000000000000320000000000000000000
.................................................................................................ACCTTTTAATGTACTACTTA.....................................................................................20128.00280004000000000000000000000000000000100000000001104231333000100000001000000000000
.......................................................TAAGTAGTAACCATTAAGAGGTTGA..........................................................................................................................25124.002400010000000000000000000000000000000000000000000000000000000230000000000000000000
.......................................................TAAGTAGTAACCATTAAGAGGTTGC..........................................................................................................................25124.0024000110000000000000000000000000000000000000000000000000000000130000000000000000000
.......................................................TAAGTAGTAACCATTAAGAGGTTGTT.........................................................................................................................26121.002100040000000000000000000000000000000000000000000000020100002120000000000000000000
.......................................................TAAGTAGTAACCATTAAGAGGTTGTC.........................................................................................................................26121.00210005000000000000000000100000000000000000000000000001113000360000000000000000000
......................................................TTAAGTAGTAACCATTAAGAGGTTG...........................................................................................................................25118.001800000000000000000000000000000000000000000000000001000000000170000000000000000000
.........................................................AGTAGTAACCATTAAGAGGTTG...........................................................................................................................22117.001700010000000000000000000000000000000000000000000000000000000160000000000000000000
......................................................TTAAGTAGTAACCATTAAGAGGTT............................................................................................................................24115.00150008000000000000000000000000000000001000000000000011000000040000000000000000000
.......................................................TAAGTAGTAACCATTAAGA................................................................................................................................19111.00110002000000000000000000000000000000000000000000000001000000150000001000000000010
.................................................................................................ACCTTTTAATGTACTACTTAT....................................................................................2119.0090006000000000000000000000000000000000000000000000000000000030000000000000000000
.................................................................................................ACCTTTTAATGTACTACTTATT...................................................................................2217.0070003000000000000000000000000000000000000000000000000010000020000000000000010000
.......................................................TAAGTAGTAACCATTAAGAG...............................................................................................................................2017.0070003000000000000000000000000000000000000000000001000000000020000000000000010000
.......................................................TAAGTAGTAACCATTAAGAGGTTGTTT........................................................................................................................2717.0070000000000000000000000000000000100000000000000001000000000050000000000000000000
.......................................................TAAGTAGTAACCATTAAGAGGTC............................................................................................................................2316.0060006000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................TAAGTAGTAACCATTAAGAGGTTGTA.........................................................................................................................2616.0060000000000000000000000000000000000000000000001000100000000220000000000000000000
.................................................................................................ACCTTTTAATGTACTACTTATC...................................................................................2215.0050004000000000000000000000000000000000000000000000000000000010000000000000000000
......................................................TTAAGTAGTAACCATTAAGAGGT.............................................................................................................................2315.0050001000000000000000000000000000000000000000000000001010000200000000000000000000
.......................................................TAAGTAGTAACCATTAAGAGGC.............................................................................................................................2215.0050005000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................CTTTTAATGTACTACTTATGACA................................................................................2314.0040000000000000000000000000000000000000000000001000020100000000000000000000000000
...............................................................................TTGTTAGATTTA-AATCCACCTTTTAATGTACTACTTATG...................................................................................3914.0040000000000000000000000000000000000000000000000011010100000000000000000000000000
.......................................................TAAGTAGTAACCATTAAGAGGTCT...........................................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000040000000000000000000
..................................................................................................CCTTTTAATGTACTACTTATG...................................................................................2114.0040003000000000000000000000000000000000000000000100000000000000000000000000000000
.....................................................CTTAAGTAGTAACCATTAAGAGG..............................................................................................................................2314.0040001000000000000000000000000000000000000000000000010000000110000000000000000000
.............................................................GTAACCATTAAGAGGTTG...........................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000040000000000000000000
................................................................................................CACCTTTTAATGTACTACTTATG...................................................................................2314.0040001000000000000000000000000000000100000000000000001001000000000000000000000000
.......................................................TAAGTAGTAACCATTAAGAGGTTGTCC........................................................................................................................2713.0030002000000000000000000000000000000000000000000000001000000000000000000000000000
............................................................AGTAACCATTAAGAGGTTG...........................................................................................................................1913.0030002000000000000000000000000000000000000000000000000000000010000000000000000000
...................................................................................................CTTTTAATGTACTACTTATG...................................................................................2013.0030003000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................ACCTTTTAATGTACTACT.......................................................................................1813.0030000000000000000000000000000000000000000000000002010000000000000000000000000000
.......................................................TAAGTAGTAACCATTAAGAGGTCC...........................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000020000000000000000010
droGri2
AGATGTGTTATTATTAAATATTATATTGATTAA-----GAATAATGTCTATGCCTTAAGTAGTAACCATTAAAAGGTTGTTTTTGTAAATTATACCGACCTTTTAGTGTACTACTTAAAGTACATTCATTG-----------------------------------------------------------CAAGTCGACGAASizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
.......................................................TAAGTAGTAACCATTAAAAGGTTG...........................................................................................................................2411.00110
.......................................................TAAGTAGTAACCATTAAAAGGTTGTT.........................................................................................................................2611.00110
droWil2
AAATTTATTAAAATGTGAGCCA------AACGAAAATTGAGCAAAACCAATGCCAAAAAT------------------------------------------------------------------------------------------------------------------------------------------GTGASizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
......ATTAAAATGTGAGCCA------AA............................................................................................................................................................................1811.00100010
droBip1
CATTATGCTTACATATGTATTTATC-TTTATTA-----AAATTAAACAAACATTATAAGTATG------------TAAATTTTTCAAATGA-GG-----------------------------------GGAAAATTAAACAATAAGATTAAATTGTAATAACAAAAAAATTAAACAATTAAGAAAAAACATTAAATTATAASizeHit CountTotal NormTotal
No Reads
droFic1
CATAATGTTTACATCTGTATTTAAC-TTTATTA-----AAATTAAACAAACATTATAAGTATGAACATTCATTTGTACGTTTTTCAAATTA-AA-----------------------------------GGAAAATTAAACAATAACATAAAATTATAACAGC--------------------------GAGAGAAACACAASizeHit CountTotal NormTotal
No Reads
droEug1
AAATAT--------------------------------------TGCGGATTCTTTAAGTAGTAACCATTAAAGGGTTGTTCCTATAAGAT-AATCAACCTTTTGATGTACTACTT--------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads

Generated: 10/20/2015 at 06:58 PM