ID:

dmo_149

 Coordinate:

scaffold_6500:14018377-14018450 +

 Confidence:

Known Ortholog

 Class:

Testes-restricted

 Genomic Locale:

antisense_to_intron

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-30.8 -30.7 -30.5

Flybase annnotation

Antisense to intron [Dmoj\GI11243-in]; utr5 [utr5_plus_811]

No Repeatable elements found

Sense Strand Reads

GGTCTATGGCGTTTACGGTCGTTTTGTCGTACTCGTAGAGCGCTCAAGTTATAAGGTAGAGATATTGTTGTCTTTTTGCATATAGCACTCTGTTATGAAAGACATCAATTCACTAGCTTTCAATTTGTACGCTTAAATGCAGCAACACACAGTGGACAACGGACGATGGACGAT

***********************************..(((((..((((((..(((.(((.((.((((.((((((((.....((((((...)))))))))))))).)))))).))).)))..))))))..)))))....************************************ 		Read size # Mismatch Hit Count Total Norm Total V110

male body		 V056

head

 V049

head

 M046

female body

 M060

embryo
..................................................ATAAGGTAGAGATATTGTTGTCT..................................................................................................... 23 0 1 14885.00 14885 14599 144 89 52 1
..................................................ATAAGGTAGAGATATTGTTGT....................................................................................................... 21 0 1 2016.00 2016 1866 87 46 17 0
..................................................ATAAGGTAGAGATATTGTTGTC...................................................................................................... 22 0 1 1358.00 1358 1321 17 9 11 0
..................................................ATAAGGTAGAGATATTGTTGTCTC.................................................................................................... 24 1 1 867.00 867 847 9 3 8 0
...................................................TAAGGTAGAGATATTGTTGTCT..................................................................................................... 22 0 1 513.00 513 498 6 4 5 0
...................................................TAAGGTAGAGATATTGTTGTCTTC................................................................................................... 24 1 1 301.00 301 298 0 0 3 0
..................................................ATAAGGTAGAGATATTGTTGTCTTC................................................................................................... 25 1 1 130.00 130 129 0 0 1 0
..................................................ATAAGGTAGAGATATTGTTGTCC..................................................................................................... 23 1 1 119.00 119 117 0 0 1 1
..................................................ATAAGGTAGAGATATTGTTG........................................................................................................ 20 0 1 112.00 112 93 12 3 4 0
..................................................ATAAGGTAGAGATATTGTTGTCTCC................................................................................................... 25 2 1 88.00 88 81 1 0 6 0
..................................................ATAAGGTAGAGATATTGTTGTCTT.................................................................................................... 24 0 1 88.00 88 83 2 2 1 0
...................................................TAAGGTAGAGATATTGTTGTCTT.................................................................................................... 23 0 1 67.00 67 61 2 0 4 0
..................................................ATAAGGGAGAGATATTGTTGTCT..................................................................................................... 23 1 1 65.00 65 63 0 2 0 0
...................................................TAAGGTAGAGATATTGTTGTC...................................................................................................... 21 0 1 54.00 54 51 1 0 2 0
..................................................ATAAGGTAGAGATATTGTTGTCTTTC.................................................................................................. 26 1 1 34.00 34 34 0 0 0 0
..................................................ATAAGGTAGAGATATTGTTGTCTTT................................................................................................... 25 0 1 31.00 31 29 2 0 0 0
..................................................ATAAGGTAGAGATATTGTTGTCTCT................................................................................................... 25 1 1 31.00 31 30 0 1 0 0
...................................................TAAGGTAGAGATATTGTTGTCTTT................................................................................................... 24 0 1 27.00 27 27 0 0 0 0
..................................................ATAAGGCAGAGATATTGTTGTCT..................................................................................................... 23 1 1 26.00 26 24 1 1 0 0
...................................................TAAGGTAGAGATATTGTTGTCTTTC.................................................................................................. 25 1 1 26.00 26 26 0 0 0 0
..................................................ATAAGGGAGAGATATTGTTGT....................................................................................................... 21 1 1 18.00 18 18 0 0 0 0
..................................................ATAAGGAAGAGATATTGTTGTCT..................................................................................................... 23 1 1 16.00 16 15 1 0 0 0
..................................................ATAAGGTAGAGATATTGTTGTCTCA................................................................................................... 25 2 1 16.00 16 15 1 0 0 0
...................................................TAAGGTAGAGATATTGTTGTCTTCC.................................................................................................. 25 2 1 16.00 16 16 0 0 0 0
..................................................ATAAGGTAGAGATATTGTTGTCA..................................................................................................... 23 1 1 16.00 16 15 1 0 0 0
..................................................ATAAGTTAGAGATATTGTTGTCT..................................................................................................... 23 1 1 15.00 15 15 0 0 0 0
...................................................TAAGGTAGAGATATTGTTGTCTC.................................................................................................... 23 1 1 15.00 15 13 0 1 1 0
...................................................TAAGGTAGAGATATTGTTGT....................................................................................................... 20 0 1 15.00 15 12 2 0 1 0
..................................................ATAAGGTAGGGATATTGTTGTCT..................................................................................................... 23 1 1 12.00 12 12 0 0 0 0
..................................................ATAAGGTGGAGATATTGTTGTCT..................................................................................................... 23 1 1 12.00 12 11 0 1 0 0
..................................................ATAAGGTAGAGGTATTGTTGTCT..................................................................................................... 23 1 1 12.00 12 11 0 0 1 0
..................................................ATAAGGTAGATATATTGTTGTCT..................................................................................................... 23 1 1 11.00 11 11 0 0 0 0
..................................................ATAGGGTAGAGATATTGTTGTCT..................................................................................................... 23 1 1 11.00 11 11 0 0 0 0
..................................................ATAAGGTAGAGATATTGTTTTCT..................................................................................................... 23 1 1 11.00 11 7 0 4 0 0
..................................................ATAAGGTATAGATATTGTTGTCT..................................................................................................... 23 1 1 11.00 11 11 0 0 0 0
..................................................ATAAGGTAGAGATATTGTTGC....................................................................................................... 21 1 1 10.00 10 9 0 0 1 0
..................................................ATAATGTAGAGATATTGTTGTCT..................................................................................................... 23 1 1 10.00 10 10 0 0 0 0
..................................................ATAAGGTAGAGACATTGTTGTCT..................................................................................................... 23 1 1 9.00 9 9 0 0 0 0
..................................................ATAAGGTAGAGATATTGTTCTCT..................................................................................................... 23 1 1 9.00 9 8 0 1 0 0
..................................................ATAAGGTAGAGATATTGTTGTAT..................................................................................................... 23 1 1 9.00 9 8 1 0 0 0
..................................................ATAAGGTAGAGATATTATTGTCT..................................................................................................... 23 1 1 9.00 9 9 0 0 0 0
..................................................ATAAGGCAGAGATATTGTTGT....................................................................................................... 21 1 1 9.00 9 8 0 1 0 0
..................................................ATAAGGTAGAGATATTGTTGCCT..................................................................................................... 23 1 1 8.00 8 6 2 0 0 0
..................................................ATAAGGTAGAGATATTGTTGTCTA.................................................................................................... 24 1 1 8.00 8 7 0 0 1 0
..................................................ATAAGGTAGAGATATTGTCGTCT..................................................................................................... 23 1 1 8.00 8 8 0 0 0 0
..................................................ATAAGGTAGAGATATTCTTGTCT..................................................................................................... 23 1 1 7.00 7 7 0 0 0 0
..................................................ATAAGGTAGAGATATTGTTATCT..................................................................................................... 23 1 1 7.00 7 7 0 0 0 0
..................................................ATAAGGTAGAGATATTGTTCT....................................................................................................... 21 1 1 7.00 7 7 0 0 0 0
..................................................ATAAGGGAGAGATATTGTTGTC...................................................................................................... 22 1 1 7.00 7 7 0 0 0 0
..................................................ATAAGGCAGAGATATTGTTGTC...................................................................................................... 22 1 1 7.00 7 6 1 0 0 0
..................................................ATAAGGTAGAGATATTTTTGTCT..................................................................................................... 23 1 1 6.00 6 6 0 0 0 0
..................................................ATAAGGTAGAGATATTGTTGTCTCCC.................................................................................................. 26 3 1 6.00 6 6 0 0 0 0
..................................................ATAAGGTAGAGATATTGTTGTCTTCC.................................................................................................. 26 2 1 6.00 6 6 0 0 0 0
..................................................ACAAGGTAGAGATATTGTTGTCT..................................................................................................... 23 1 1 6.00 6 6 0 0 0 0
..................................................ATAAGGTAGAGATATTGTTGTTCT.................................................................................................... 24 2 1 6.00 6 6 0 0 0 0
..................................................ATAAGGTAGAGATATTGTTGTT...................................................................................................... 22 1 1 6.00 6 6 0 0 0 0
..................................................ATAAGGTAGAGATATTGCTGTCT..................................................................................................... 23 1 1 6.00 6 5 1 0 0 0
..................................................ATAAGATAGAGATATTGTTGTCT..................................................................................................... 23 1 1 5.00 5 5 0 0 0 0
..................................................ATAAGGTAGAGATACTGTTGTCT..................................................................................................... 23 1 1 5.00 5 4 1 0 0 0
..................................................ATAAGGTAGATATATTGTTGT....................................................................................................... 21 1 1 5.00 5 5 0 0 0 0
..................................................ATAAGGTAGAGATATTGTTGTTT..................................................................................................... 23 1 1 5.00 5 3 2 0 0 0
..................................................ATACGGTAGAGATATTGTTGTCT..................................................................................................... 23 1 1 4.00 4 3 0 1 0 0
..................................................GTAAGGTAGAGATATTGTTGTCT..................................................................................................... 23 1 1 4.00 4 4 0 0 0 0
..................................................TTAAGGTAGAGATATTGTTGTCT..................................................................................................... 23 1 1 4.00 4 4 0 0 0 0
...................................................TAAGGTAGAGATATTGTTGTCTTCA.................................................................................................. 25 2 1 4.00 4 4 0 0 0 0
..................................................CTAAGGTAGAGATATTGTTGTCT..................................................................................................... 23 1 1 4.00 4 4 0 0 0 0
..................................................ATAAGGTATAGATATTGTTGT....................................................................................................... 21 1 1 4.00 4 4 0 0 0 0
..................................................ATAAGGTAGGGATATTGTTGT....................................................................................................... 21 1 1 4.00 4 4 0 0 0 0
..................................................ATAAGGTATAGATATTGTTGTC...................................................................................................... 22 1 1 4.00 4 4 0 0 0 0
..................................................ATAAGGTAGAGATATATTTGTCT..................................................................................................... 23 2 1 4.00 4 4 0 0 0 0
..................................................ATAAGGTAGACATATTGTTGTCT..................................................................................................... 23 1 1 4.00 4 4 0 0 0 0
...................................................TAAGGTAGAGATATTGTTGTCC..................................................................................................... 22 1 1 4.00 4 4 0 0 0 0
..................................................ATAAGGTAGAGATGTTGTTGTCT..................................................................................................... 23 1 1 4.00 4 4 0 0 0 0
..................................................ATAACGTAGAGATATTGTTGTCT..................................................................................................... 23 1 1 4.00 4 3 1 0 0 0
.................................................CATAAGGTAGAGATATTGTTGTCT..................................................................................................... 24 1 1 4.00 4 4 0 0 0 0
..................................................ATAAGGTAGAGATATTGTTGTCCC.................................................................................................... 24 2 1 4.00 4 4 0 0 0 0
..................................................ATAAGGAAGAGATATTGTTGTC...................................................................................................... 22 1 1 4.00 4 4 0 0 0 0
..................................................ATAAGTTAGAGATATTGTTGT....................................................................................................... 21 1 1 3.00 3 3 0 0 0 0
...............................CTCGTAGAGCGCTCAAGTT............................................................................................................................ 19 0 1 3.00 3 3 0 0 0 0
..................................................ATAAGGTAGAGATATTGTTGTCTTTT.................................................................................................. 26 0 1 3.00 3 3 0 0 0 0
..................................................ATAAAGTAGAGATATTGTTGTCT..................................................................................................... 23 1 1 3.00 3 3 0 0 0 0
..................................................ATAAGGTAGAGTTATTGTTGTCT..................................................................................................... 23 1 1 3.00 3 2 1 0 0 0
..............................ACTCGTAGAGCGCTCAAGTT............................................................................................................................ 20 0 1 3.00 3 2 0 0 1 0
..................................................ATAAGGTGGAGATATTGTTGT....................................................................................................... 21 1 1 3.00 3 2 0 1 0 0
..................................................ATAAGGTAGTGATATTGTTGTCT..................................................................................................... 23 1 1 3.00 3 3 0 0 0 0
..................................................ATAAGGTAGCGATATTGTTGTCT..................................................................................................... 23 1 1 3.00 3 2 1 0 0 0
....................................................AAGGTAGAGATATTGTTGTCT..................................................................................................... 21 0 1 3.00 3 1 0 0 2 0
..................................................ATAAGGTAGAGATATTGTT......................................................................................................... 19 0 1 3.00 3 2 0 1 0 0
..................................................ATAAGGTAGAGATATTGTTGTCTTTCT................................................................................................. 27 1 1 3.00 3 3 0 0 0 0
..................................................ATAAGGTAGAAAAATTGTTGTC...................................................................................................... 22 2 1 3.00 3 3 0 0 0 0
..................................................ATAAGGTAAAGATATTGTTGTCT..................................................................................................... 23 1 1 3.00 3 3 0 0 0 0
..................................................ATAAGGTAGAGATATTGTC......................................................................................................... 19 1 1 3.00 3 3 0 0 0 0
..................................................ATAAGGTAGAGATTTTGTTGTCT..................................................................................................... 23 1 1 3.00 3 3 0 0 0 0
..................................................ATAAGGTGGAGATATTGTTGTC...................................................................................................... 22 1 1 3.00 3 3 0 0 0 0
..................................................ATAAGGTAGAGAAATTGTTGTCT..................................................................................................... 23 1 1 3.00 3 3 0 0 0 0
..................................................ATAAGGTAGAGATATTGTTGTCTTTCTC................................................................................................ 28 2 1 2.00 2 2 0 0 0 0
..................................................ATGAGGTAGAGATATTGTTGTCTC.................................................................................................... 24 2 1 2.00 2 2 0 0 0 0
..................................................ATAAGGTAGAGATATTGTTTT....................................................................................................... 21 1 1 2.00 2 0 1 1 0 0
..................................................ATAAGGTAGAGATATTGTTTTCTC.................................................................................................... 24 2 1 2.00 2 2 0 0 0 0
..................................................GTAAGGTAGAGATATTGTTGTC...................................................................................................... 22 1 1 2.00 2 1 0 1 0 0
..................................................ATAATGTAGAGATATTGTTGT....................................................................................................... 21 1 1 2.00 2 2 0 0 0 0
..................................................ATAAGGTAGAGATATTGTTGTCTCCT.................................................................................................. 26 2 1 2.00 2 2 0 0 0 0
..................................................GTAAGGTAGAGATATTGTTGT....................................................................................................... 21 1 1 2.00 2 2 0 0 0 0
..................................................AAAAGGTAGAGATATTGTTGTCT..................................................................................................... 23 1 1 2.00 2 2 0 0 0 0
...................................................TAAGGTAGAGATATTGTTGTCTTA................................................................................................... 24 1 1 2.00 2 2 0 0 0 0
..................................................ATAAGGGAGAGATATTGTTGTCTC.................................................................................................... 24 2 1 2.00 2 2 0 0 0 0
..................................................ATAAGGCAGAGATATTGTTGTCTC.................................................................................................... 24 2 1 2.00 2 2 0 0 0 0
...................................................TAAGGTAGAGATATTGTTGTCTTCT.................................................................................................. 25 1 1 2.00 2 2 0 0 0 0
..................................................ATAGGGTAGAGATATTGTTGT....................................................................................................... 21 1 1 2.00 2 1 1 0 0 0
..................................................ATAAGGTAGAGACATTGTTGTCTC.................................................................................................... 24 2 1 2.00 2 2 0 0 0 0
..................................................ATAAGGTAGAGATATTGTGTTCT..................................................................................................... 23 2 1 2.00 2 2 0 0 0 0
..................................................ATAAGGTAGAGATTTTGTTGT....................................................................................................... 21 1 1 2.00 2 2 0 0 0 0
..................................................ATAAGCTAGAGATATTGTTGTCT..................................................................................................... 23 1 1 2.00 2 2 0 0 0 0
..................................................ATAAGGTAGGGATATTGTTGTC...................................................................................................... 22 1 1 2.00 2 2 0 0 0 0
...................................................TAAGGTAGAGATATTGTTGCCT..................................................................................................... 22 1 1 2.00 2 2 0 0 0 0
..................................................ATAAGGTAGAGATATTGTTC........................................................................................................ 20 1 1 2.00 2 2 0 0 0 0
...................................................TAAGGTATAGATATTGTTGTCTTC................................................................................................... 24 2 1 2.00 2 2 0 0 0 0
..................................................ATAAGGTAGAGATATTGTTGTCGGTC.................................................................................................. 26 3 1 2.00 2 2 0 0 0 0
.................................................CATAAGGTAGAGATATTGTTGT....................................................................................................... 22 1 1 2.00 2 2 0 0 0 0
..................................................ATTAGGTAGAGATATTGTTGTCT..................................................................................................... 23 1 1 2.00 2 2 0 0 0 0
..................................................ATAAGGTACAGATATTGTTGTCT..................................................................................................... 23 1 1 2.00 2 2 0 0 0 0
...................................................TAAGGGAGAGATATTGTTGTCTTTC.................................................................................................. 25 2 1 2.00 2 2 0 0 0 0
..................................................ATAAGGTAGAGATATTTTTGTC...................................................................................................... 22 1 1 2.00 2 2 0 0 0 0
..................................................ATAAGGGAGAGATATTGTTGTCTCC................................................................................................... 25 3 1 2.00 2 2 0 0 0 0
..................................................ATAAGGTAGAGCTATTGTTGTCT..................................................................................................... 23 1 1 2.00 2 2 0 0 0 0
..................................................TTAAGGTAGAGATATTGTTGT....................................................................................................... 21 1 1 2.00 2 2 0 0 0 0
..................................................ATAAGGTAGAGATACTGTTGT....................................................................................................... 21 1 1 2.00 2 2 0 0 0 0
..................................................ATAAGGTAGAGATATAGTTGTCT..................................................................................................... 23 1 1 2.00 2 2 0 0 0 0
..................................................ATAAGGTAGAAATATTGTTGTCT..................................................................................................... 23 1 1 2.00 2 2 0 0 0 0
...................................................TAAGGGAGAGATATTGTTGTCT..................................................................................................... 22 1 1 2.00 2 1 1 0 0 0
..................................................ATAAGGTAGAGATATTGTTGTCTTCA.................................................................................................. 26 2 1 2.00 2 2 0 0 0 0
...................................................TAAGGTAGAGATATTGTTGCCTTC................................................................................................... 24 2 1 2.00 2 2 0 0 0 0
..................................................ATAAGGTAGAGATATTGTTGTA...................................................................................................... 22 1 1 2.00 2 2 0 0 0 0
..................................................ATAAGGGAGAGCTATTGTTGTCT..................................................................................................... 23 2 1 2.00 2 0 2 0 0 0
..................................................ATAAGGTAGAGATATTTTTGT....................................................................................................... 21 1 1 2.00 2 2 0 0 0 0
...................................................TAAGGTAGAGATATTGCTGTCT..................................................................................................... 22 1 1 2.00 2 2 0 0 0 0
..................................................ATAAGGTAGAGATATTGTTGTCCTC................................................................................................... 25 2 1 2.00 2 2 0 0 0 0
..................................................ATAAGGTAGAGATATCGTTGT....................................................................................................... 21 1 1 2.00 2 2 0 0 0 0
..................................................ATAAGGTAGAGATATTGTTGA....................................................................................................... 21 1 1 2.00 2 0 2 0 0 0
..................................................ATAAGGTAGACATATTGTTGT....................................................................................................... 21 1 1 2.00 2 2 0 0 0 0
..................................................ATAAGGTAGAGATATTGTTGCC...................................................................................................... 22 1 1 2.00 2 2 0 0 0 0
..................................................ATAAGGTAGAGATATTGTTGTCCT.................................................................................................... 24 1 1 2.00 2 2 0 0 0 0
..................................................ATAAGGTAGAGATACTGTTGTC...................................................................................................... 22 1 1 2.00 2 2 0 0 0 0
...................................................TAAGGAAGAGATATTGTTGTCT..................................................................................................... 22 1 1 2.00 2 2 0 0 0 0
..................................................ATAAGGTAGAGATCTTGTTGTCT..................................................................................................... 23 1 1 1.00 1 0 1 0 0 0
..................................................ATAAGGAAGAGATATTGTTGTCTT.................................................................................................... 24 1 1 1.00 1 1 0 0 0 0
..................................................ATAGGGTAGAGATATTGTTCT....................................................................................................... 21 2 1 1.00 1 1 0 0 0 0
..................................................ATAAGGAAGAGATATTGTTGTCTC.................................................................................................... 24 2 1 1.00 1 1 0 0 0 0
...................................................TAAGGAAGAGATATTGTTGTCTT.................................................................................................... 23 1 1 1.00 1 1 0 0 0 0
..................................................ATAACGTAGAGATATTGTTGT....................................................................................................... 21 1 1 1.00 1 0 0 0 0 1
...................................................TAAGGTAGGGATATTGTTGTC...................................................................................................... 21 1 1 1.00 1 1 0 0 0 0
.....................................................................................................ACATCAATTCACTAGCTTTCAA................................................... 22 0 1 1.00 1 0 0 0 1 0
..................................................ATAAGGTAGAGATGTTACTGTCT..................................................................................................... 23 3 1 1.00 1 0 1 0 0 0
...................................................TAAGGTAGAGATATTGTTCT....................................................................................................... 20 1 1 1.00 1 1 0 0 0 0
...................................................TAAGGTAGAGATATTGTTGTCTTTTTC................................................................................................ 27 1 1 1.00 1 1 0 0 0 0
..................................................ATACGGCAGAGATATTGTTGTCT..................................................................................................... 23 2 1 1.00 1 1 0 0 0 0
....................................................AATGTAGAGATATTGTTGTCT..................................................................................................... 21 1 1 1.00 1 1 0 0 0 0
...................................................TAAGGTAGAGATATTGTTGTCTTTGT................................................................................................. 26 1 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGAGAAAATGTTGTCC..................................................................................................... 23 3 1 1.00 1 0 0 0 1 0
..................................................ATAAGGTAGAGATATTGTTGTCCCC................................................................................................... 25 3 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGAGATATTGTTGGC...................................................................................................... 22 1 1 1.00 1 0 1 0 0 0
..................................................ATAAGCTAGAGATATTGTTGTCTT.................................................................................................... 24 1 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGAGATATTGT.......................................................................................................... 18 0 1 1.00 1 0 0 1 0 0
..................................................ATAAGGTAGAGATATTGTTGTCTTA................................................................................................... 25 1 1 1.00 1 1 0 0 0 0
..................................................ATATGGTAGAGCTATTGTTGTAT..................................................................................................... 23 3 1 1.00 1 0 0 1 0 0
...................................................TAAGGTAGAGATATTGCTGTCTTC................................................................................................... 24 2 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGAGATATTGTTGTATT.................................................................................................... 24 1 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGAGATATTGTTGTCTCG................................................................................................... 25 2 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTATAGATATTGTTGTCTC.................................................................................................... 24 2 1 1.00 1 1 0 0 0 0
..................................................ATACGGTAGAGATATTGTTGTCTC.................................................................................................... 24 2 1 1.00 1 1 0 0 0 0
..................................................ATAAGCTAGAGATATTGTTGT....................................................................................................... 21 1 1 1.00 1 0 1 0 0 0
..................................................ATAAGGAAGAGATATTGTTGT....................................................................................................... 21 1 1 1.00 1 1 0 0 0 0
..................................................CTAAGGTAGAGATATTGTTGT....................................................................................................... 21 1 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGAGATATTGTTGTCTTCT.................................................................................................. 26 1 1 1.00 1 1 0 0 0 0
................................................TGGTAAGGTAGAGATATTGTTGTCTTC................................................................................................... 27 3 1 1.00 1 0 0 0 1 0
..................................................ATAGGGGAGAGATATTGTTGCCT..................................................................................................... 23 3 1 1.00 1 0 1 0 0 0
...................................................TAAGGTAGAGATATTGCTG........................................................................................................ 19 1 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGAGATATTGTTGTCTAT................................................................................................... 25 1 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGACATATTGCTGTCT..................................................................................................... 23 2 1 1.00 1 0 1 0 0 0
..................................................ATAAGTTAGAGATATTGTTGTCTC.................................................................................................... 24 2 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGAGATTTTGTTGTCTC.................................................................................................... 24 2 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTATAGATCTTGTTGTAT..................................................................................................... 23 3 1 1.00 1 0 1 0 0 0
...................................................TAAGGGAGAGATTTTGTTGTCTTTT.................................................................................................. 25 2 1 1.00 1 0 1 0 0 0
..................................................ATAAGGTAGAGATATTGATGTCT..................................................................................................... 23 1 1 1.00 1 1 0 0 0 0
...................................................TAAGGTAGAGACATTGTTGTCT..................................................................................................... 22 1 1 1.00 1 1 0 0 0 0
.....................................................ATGTAGAGATATTGTTGT....................................................................................................... 18 1 1 1.00 1 1 0 0 0 0
..................................................ATAAGGCAGAGATATTGTTGTCTT.................................................................................................... 24 1 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGATATATTGTTGTC...................................................................................................... 22 1 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGAGATATTGTTCTCC..................................................................................................... 23 2 1 1.00 1 1 0 0 0 0
...................................................TAAGGGAGAGATATTGTTGT....................................................................................................... 20 1 1 1.00 1 1 0 0 0 0
...................................................TAAGGTAGAGATATATTTGTCTTC................................................................................................... 24 3 1 1.00 1 1 0 0 0 0
..................................................ATATGGTAGAGATATTGTTGTCT..................................................................................................... 23 1 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGAGATATTGGTGTCT..................................................................................................... 23 1 1 1.00 1 1 0 0 0 0
..................................................ATACGGTAGAGATATTGTTGT....................................................................................................... 21 1 1 1.00 1 0 1 0 0 0
...................................................TAAGGTAGAGATATTGTTCTTC..................................................................................................... 22 3 1 1.00 1 1 0 0 0 0
..................................................ATCAGGTAGAGATATTGTTGT....................................................................................................... 21 1 1 1.00 1 1 0 0 0 0
..................................................AGAAGGTAGAGATATTGGTGTCT..................................................................................................... 23 2 1 1.00 1 0 1 0 0 0
..................................................ATAAGGGAGAGATATTGTTGTCTTC................................................................................................... 25 2 1 1.00 1 1 0 0 0 0
..................................................ATACGGTAGAGATATTGTTTTCT..................................................................................................... 23 2 1 1.00 1 0 0 1 0 0
...................................................TGAGGTAGAGATATTGTTGTCTTCC.................................................................................................. 25 3 1 1.00 1 1 0 0 0 0
...................................................TAAGGTAGAAATATTGTTGTCT..................................................................................................... 22 1 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGGGATATTGTTGTCTCC................................................................................................... 25 3 1 1.00 1 1 0 0 0 0
...................................................TAAGGTAGAGATATTGTTGTCTTCTC................................................................................................. 26 2 1 1.00 1 1 0 0 0 0
...................................................TAAGGTATAGATATTGTTGTCTT.................................................................................................... 23 1 1 1.00 1 1 0 0 0 0
.........................................................................TTTTGCATATAGCACTCTGTTATGT............................................................................ 25 1 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGAGATAATGTTGT....................................................................................................... 21 1 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGAGATATTGTTGTG...................................................................................................... 22 1 1 1.00 1 0 0 0 1 0
..................................................ATAAGGTAGAGAAATTGATGTT...................................................................................................... 22 3 3 1.00 3 3 0 0 0 0
..................................................ATAAGGTAGAGATATTGCTGT....................................................................................................... 21 1 1 1.00 1 1 0 0 0 0
..................................................GTAAGGTAGAGATATTGTTGTCTC.................................................................................................... 24 2 1 1.00 1 1 0 0 0 0
..................................................ATAATGTAGAGATATTGTTGTCTC.................................................................................................... 24 2 1 1.00 1 1 0 0 0 0
..................................................ATAATGTAGAGATATTGTTGTC...................................................................................................... 22 1 1 1.00 1 1 0 0 0 0
..................................................ATGCGGTAGAGATATTGTTGT....................................................................................................... 21 2 1 1.00 1 0 0 1 0 0
...................................................TAAGTTAGAGATATTGTTGTCTT.................................................................................................... 23 1 1 1.00 1 1 0 0 0 0
..............................................TTTCATAAGGTAGAGATATTGTTGTCT..................................................................................................... 27 3 1 1.00 1 0 0 0 1 0
..................................................ATAAGGAAGAGATATTGTTGTCTTCC.................................................................................................. 26 3 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGAGATGTTCTTG........................................................................................................ 20 2 1 1.00 1 0 1 0 0 0
..................................................ATGAGGTAGAGATATTGTTGTCT..................................................................................................... 23 1 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGAGATATTGTTT........................................................................................................ 20 1 1 1.00 1 0 0 1 0 0
..................................................ATAAGGTAGAGATATTTTTTTC...................................................................................................... 22 2 1 1.00 1 0 1 0 0 0
...................................................TAAGGTAGAGATATTGTTATCT..................................................................................................... 22 1 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGTGATATTGTTGT....................................................................................................... 21 1 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGAGATAATGTTGTCT..................................................................................................... 23 1 1 1.00 1 1 0 0 0 0
...................................................TAAGGTAGGGATATTGTTGTCTTC................................................................................................... 24 2 1 1.00 1 1 0 0 0 0
...................................................TAAGGTAGAGATATTGTTGTTCT.................................................................................................... 23 2 1 1.00 1 1 0 0 0 0
...............................................AGCATAAGGTAGAGATATTGTTGTCT..................................................................................................... 26 3 1 1.00 1 0 0 0 1 0
..................................................ATAAGGTAGTGATGTTGTTGTCT..................................................................................................... 23 2 1 1.00 1 0 1 0 0 0
..................................................ATAAGGTAGAGATATCGGTGT....................................................................................................... 21 2 1 1.00 1 0 1 0 0 0
..................................................ATAAGGTAGAGATATTGTTGCTAT.................................................................................................... 24 3 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGAGATATTGTGGTC...................................................................................................... 22 1 1 1.00 1 1 0 0 0 0
...................................................TAAGGTAGAGATATTGTTGTAT..................................................................................................... 22 1 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGATATATTGTTG........................................................................................................ 20 1 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGCGCTATTGTTGTCT..................................................................................................... 23 2 1 1.00 1 0 0 1 0 0
..................................................ATAAGGCAGAGATATTGTTTTCT..................................................................................................... 23 2 1 1.00 1 0 1 0 0 0
..................................................ATAAGGTAGAGATATTGCTGTC...................................................................................................... 22 1 1 1.00 1 0 1 0 0 0
..................................................ATAAGGTAGAGATATTTTTGTCTCC................................................................................................... 25 3 1 1.00 1 1 0 0 0 0
..................................................ATAATGTAGAGATATTGTTGTCTCC................................................................................................... 25 3 1 1.00 1 1 0 0 0 0
..................................................ATAAGGAAGAGATATTGTTGTT...................................................................................................... 22 2 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGAGATATTGTTGTCTTTAA................................................................................................. 27 2 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGAGGTATTGTTGT....................................................................................................... 21 1 1 1.00 1 0 0 0 1 0
..................................................ATAAGGGAGAGATATTGTTTTC...................................................................................................... 22 2 1 1.00 1 0 0 1 0 0
..................................................ATAAGGTAGTGATATTGTTGTC...................................................................................................... 22 1 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGAGATATTGTTGTTTCT................................................................................................... 25 2 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGAGATATTGTCTTCT..................................................................................................... 23 2 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTGGAGATATTGGTGTCTC.................................................................................................... 24 3 1 1.00 1 0 0 1 0 0
..................................................ATAAAGTAGAGATATTGTTG........................................................................................................ 20 1 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGAGATATTGTTGTTC..................................................................................................... 23 2 1 1.00 1 0 1 0 0 0
..................................................ATAAGGTAGAGATATTATTGTCA..................................................................................................... 23 2 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTGGAGATATTGTTGTCTTC................................................................................................... 25 2 1 1.00 1 1 0 0 0 0
..................................................AGAAGGTAGAGATATTGTTGTCC..................................................................................................... 23 2 1 1.00 1 0 0 0 0 1
..................................................ATAAGGTAGAGCTATTGTTGTCTTCA.................................................................................................. 26 3 1 1.00 1 1 0 0 0 0
...................................................TAAGGTAGTGATATTGTTGTCT..................................................................................................... 22 1 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGAGATATTGTTGTCTCTCC................................................................................................. 27 3 1 1.00 1 1 0 0 0 0
..................................................ATAAGCTAGAGATATTGTTTTC...................................................................................................... 22 2 1 1.00 1 0 1 0 0 0
..................................................ATAAGGTAGATATATTGTTGTCTC.................................................................................................... 24 2 1 1.00 1 1 0 0 0 0
...................................................TAAGGTAGAGATATTGTTGTCTTCCTC................................................................................................ 27 3 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGAGATATTGTTGTCTTTTCT................................................................................................ 28 2 1 1.00 1 1 0 0 0 0
.................................................CATAAGGTAGAGATATTGTTGTC...................................................................................................... 23 1 1 1.00 1 0 1 0 0 0
...................................................TAAGGTAGAGATATTGTTGTCTCA................................................................................................... 24 2 1 1.00 1 1 0 0 0 0
..................................................ATAAGGGAGAGTTATTGTTGT....................................................................................................... 21 2 1 1.00 1 0 1 0 0 0
..................................................ATAAGGTAGAGATATTGTTGCCTCA................................................................................................... 25 3 1 1.00 1 1 0 0 0 0
...................................................TAAGGCAGAGATATTGTTGTCT..................................................................................................... 22 1 1 1.00 1 0 1 0 0 0
..................................................GTAAGGTAGAGTTATTGTTGTCT..................................................................................................... 23 2 1 1.00 1 1 0 0 0 0
.....................................................AGGTAGAGATATTGTTGTCT..................................................................................................... 20 0 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGAGGTATTGTTGTC...................................................................................................... 22 1 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGAGATATTGTTGTCTTTTC................................................................................................. 27 1 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGAGATATTGTTGTCTTTTT................................................................................................. 27 0 1 1.00 1 0 1 0 0 0
..................................................ATAAGGGAGAGATATTGTTG........................................................................................................ 20 1 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGAGATATTGCTGTAT..................................................................................................... 23 2 1 1.00 1 0 0 0 1 0
..................................................ATAATGTAGAGATATTGTTGTCC..................................................................................................... 23 2 1 1.00 1 1 0 0 0 0
...................................................TAAGGTAGAGATATTGTTG........................................................................................................ 19 0 1 1.00 1 0 0 0 1 0
...................................................TAAGGTAGAAATATTGTTGTCTTTT.................................................................................................. 25 1 1 1.00 1 1 0 0 0 0
...................................................TAAGGTAGAGATATTGTTGTT...................................................................................................... 21 1 1 1.00 1 1 0 0 0 0
..................................................AGAAGGGAGAGATATTGTTGTCT..................................................................................................... 23 2 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGAAAAATTGTTGT....................................................................................................... 21 2 1 1.00 1 0 1 0 0 0
..................................................ATAAAGTAGAGATATTGTTGT....................................................................................................... 21 1 1 1.00 1 0 1 0 0 0
..................................................ATCAGGGAGAGATATTGTTGTCT..................................................................................................... 23 2 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGAGATATTGGTTT....................................................................................................... 21 2 1 1.00 1 0 0 1 0 0
..................................................ATAAGGTGTAGATATTGTTGTCTT.................................................................................................... 24 2 1 1.00 1 1 0 0 0 0
..................................................ATAACGTAGAGATATTGTTGTCTC.................................................................................................... 24 2 1 1.00 1 1 0 0 0 0
...................................................TAAGGGAGAGATATTGTTGTCTT.................................................................................................... 23 1 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTGTAGATATTGTTGTCT..................................................................................................... 23 2 1 1.00 1 1 0 0 0 0
..................................................ATACGGTAGAGATATTGTTGTC...................................................................................................... 22 1 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGAGATATTGTTGTCTCCA.................................................................................................. 26 3 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGAGATATTGTTGGCTC.................................................................................................... 24 2 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGAGATATTGTTGTAA..................................................................................................... 23 2 1 1.00 1 0 0 0 1 0
..................................................ATAAGCTAGAGATATTGTTGTCTC.................................................................................................... 24 2 1 1.00 1 1 0 0 0 0
....................................................AAGGTAGAGATATTGTTGTC...................................................................................................... 20 0 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGAGATATTGTTCTC...................................................................................................... 22 1 1 1.00 1 1 0 0 0 0
...................................................TAAGGTAGAGATATTGTTGTCTTTT.................................................................................................. 25 0 1 1.00 1 1 0 0 0 0
...................................................TAATGTAGAGATATTGTTGTCT..................................................................................................... 22 1 1 1.00 1 1 0 0 0 0
.................................................ATTAAGGTAGAGATATTGTTGTCT..................................................................................................... 24 2 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGAGATATTATTGTC...................................................................................................... 22 1 1 1.00 1 1 0 0 0 0
...................................................TAAGGTAGAGATATTGTTGTCTTCCC................................................................................................. 26 3 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGCGATATTGGTGTCT..................................................................................................... 23 2 1 1.00 1 0 1 0 0 0
...................................................CAAGGTAGAGATATTGTTGTCT..................................................................................................... 22 1 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGAGATATTGTCT........................................................................................................ 20 2 1 1.00 1 1 0 0 0 0
..................................................ATGAGGTAGAGATATTGTTGTC...................................................................................................... 22 1 1 1.00 1 1 0 0 0 0
..................................................ATAAGGGGGAGATATTGTTGT....................................................................................................... 21 2 1 1.00 1 1 0 0 0 0
...................................................TAAGGTAGAGATCTTGTTGTCTTCT.................................................................................................. 25 2 1 1.00 1 1 0 0 0 0
..................................................ATAAGGCAGAGATATTGTTGTCC..................................................................................................... 23 2 1 1.00 1 1 0 0 0 0

Anti-sense strand reads

CCAGATACCGCAAATGCCAGCAAAACAGCATGAGCATCTCGCGAGTTCAATATTCCATCTCTATAACAACAGAAAAACGTATATCGTGAGACAATACTTTCTGTAGTTAAGTGATCGAAAGTTAAACATGCGAATTTACGTCGTTGTGTGTCACCTGTTGCCTGCTACCTGCTA

************************************..(((((..((((((..(((.(((.((.((((.((((((((.....((((((...)))))))))))))).)))))).))).)))..))))))..)))))....*********************************** 		Read size # Mismatch Hit Count Total Norm Total M046

female body
.............................................................................................ATACTTCCTGTAGTTGAATGA............................................................ 21 3 4 0.25 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droMoj3 scaffold_6500:14018327-14018500 + dmo_149 candidate-rescued GG-------TCT-------------------------------------ATGGCGTTTACGGTCGTTTTGTCGTACT---------------------------------------------C-GTAGAGC-GCTCAAGTTATAAGGTAGAGATATTGTTGTCTTTT-TGC-ATATAGCACTCTG--TTATGAAAGACATCAAT-TCACTAGCTTTCAATTTGTACGCTTA-AATGCAGCAACACACAGTGGACAA-CGGACGATGGACGAT
droVir3 scaffold_12963:3615378-3615531 + dvi-mir-962 Known_mirbase G-------------------------------------------------TTTCATTTTTCAGTGAATTAAACAACTCA-----ATTTA----CACACACAC-ACACA----------CATAAGAAAGGGCGCCTCAAATTATAAGGTAGAGAAATTGTTGTCTACT-TTACA----------TATGG----TGAGACATCAAT-TCACTAGCTTTCAATTTGTACGCCCA-AATGCAAC--------------------------------
droGri2 scaffold_15252:3147186-3147333 + dgr_37 candidate-rescued GT-------TCT-------------------------------------T-TTAAATTTCAGTCTACA-----AACTAAGAGCAGGTTA----CTTTC---A-TAACA---------CACT---CAAGAGC-TCTCAGATTATAAGGTAGAGATTTTGTTGTCTTCTATTA------------TA-------AAAGACATCAAT-TCACTAGCTTTCAATTTGTATGCTCA-AATGCAAC--------------------------------
droWil2 scf2_1100000004521:8625852-8625983 - dwi_150 confident A------------------------------------------------------------------------------------------------------------------------------GGAC-CCTCAAGTTATAAGGTAGAGAAAATGTTGTCTTTA-TAT-TTGTAACAAT-TG--T----TAAGACATCACTTTCACTAGCTTTCAATTTGTCTGCTCCACATGCAACAACATATAAT--ACAATCAAACAA--AATGAT
droAna3 scaffold_12916:11085021-11085202 + dan_24 confident GA-------TCA---------CTGGTTACTGAGGTTGTTTT-GTCATAAGCTTCGTTTTCTGGCGATCAAATACGCTCG-----ACTTT----GGGCC---C-AACCA----------CCTGGCCGAGGGC-ACTCAAGCTATAAGGTAGAGAAAATAATGTCTTCGTCTC------------CA--A----ATAGACATCAATTTCCCTAGCTTGCATTTTGCCTGCCCC-CAAGCAACAA------------------------------
droBip1 scf7180000396572:742770-742949 + GA-------TCA---------CTGGTTACTGAGGTTGTGTC-TGCATCAGCTTCATTTTCTGGCTATCAAATACACACG-----ACTTT----GGGCC---C-AACCA----------CCTGGTCGGGGGC-ACCCAAGCTATAAGGTAGAGAAAGTAATGTCTTCGTCTC------------CA--A----ATAGACATCAATTTCCCTAGCTTGCAGTTTGCTTGCCCT-CAAGCAAC--------------------------------
droKik1 scf7180000302389:430836-431000 - AA-------TC-------------------------------------GACTTCGTTTTCTGGCGATCAAACAAACTCG-----TCTCG----GAACT---CCAACATCCTGGAACTCCCTGC-CCAAGGC-ACTCAAGCTATAAGGTAGAGAAATGGCTGTCTTG-ACTC------------TAAGC----TCGGACATCAATTTCACTAGCTTTCAATTTGTCTGCCCC-CACGCAACA-------------------------------
droFic1 scf7180000453932:197424-197592 - GA------------------------------------------------CTTCGTTTTCTGGCGATCAAACAAACTCG-----GCTCG----GAAGC---C-ATCC------------CCCC-ACTGGGC-AGTCAAGCTATAAGGTAGAGAAACTCTTGTCTTCCCCTA------------CA--T----CCAGACATCAGTTTCACTAGCTTTCAATTTGTCTGCCCC-CACGCAACAAGAT--AGTGATTAC-C---CGATGGA---C
droEle1 scf7180000490753:30414-30564 + GG-------T----------------TACTGAGGTTGTTCT-CGCTTCGGCTTCGTTTTCTGGAGATCAAATAAACTCG-----A----------ACC---C-AATTA----------CCT----CGGGGC-ACCCAAGCTATAAGGTAGAGAAAATGTTGTCTTCC-CAC------------TA--C----TCAGACATCAATTTCACTAGCTTTCAATTTGTCTGC--------------------------------------------
droRho1 scf7180000778253:33752-33881 - G------------------------------------------------------TTTTCTGGCGATCAAATAAACTCG-----GCTTT----GAGTT---C-AACTA----------CCTCC-ACGGGGC-ACTCAAGCTATAAGGTAGAGAAACTGTTGTCTTCCATAC------------TA--C-----TGGACATCACTTTCACTAGCTTTCAGCTTGTTTGC--------------------------------------------
droBia1 scf7180000302422:3830749-3830944 + GGGTCGAGTTCTCTTTGATCACCGGTTACTGATGTTGTTTTCCGACGCGGCTTCGTTTTCTGGCGATCAAACAAACTCG-----ACCCA----AAGGC---C-AACCA----------ACC-C-GTCGGGC-ACTCAAGCTATAAGGTAGAGAAATTGTTGTCCCACACTC------------TA--T----TCAGACATCAATTTCACTAGCTTTCAATTTGACTGCCCC-CATGCATCA-------------------------------
droTak1 scf7180000415871:385529-385682 + GC-------TTT------------------------------------TTCTTCGTTTTCTGGCGATCAAATAAACTCG-----ACTTA----AAACC---C-AACCA----------ACTCG-ACGGGGC-ACCCAAGCTATAAGGTAGAGAAACTGTTGTCTGGCACTC------------AA--T----TCAGACATCAATTTCACTAGCTTTCAATTTGTCTGCCCC-CACGCAACA-------------------------------
droEug1 scf7180000409063:317617-317709 + -------------------------------------------------------------------------------------------------------------------------------GGGC-ACACAAGCTCTAAGGTAGAGAAAATGTTGTCTTTGACGC------------GT--T----CTAGACATCAATTTCCCTAGCTTTCAATTTGTCTGCCCC-CACGCAAC--------------------------------
dm3 chr2L:5641300-5641395 + dme-mir-962 Known_mirbase -----------------------------------------------------------------------------------------------------------------------------TGGGGC-ACTCAGGCTATAAGGTAGAGAAATTGATGCTGTCTACAC------------TA--T----TCAGACTTCAGTTTCATTACCTTTCAATTTGTTTGCCCC-CATGCAACA-------------------------------
droSim2 2l:5446054-5446149 + dsi-mir-962 Known_mirbase -----------------------------------------------------------------------------------------------------------------------------TGGGGC-GCTCAGGCTATAAGGTAGAGAAATTGATGTTGTCTACAC------------TA--T----TCAGACTTCAGTTTCATTGCCTTTCAATTTGTTTGCCCC-CCTGCAACA-------------------------------
droSec2 scaffold_5:3719042-3719137 + dse_179 candidate-rescued -----------------------------------------------------------------------------------------------------------------------------TGGGGC-ATTCAGGCTATAAGGTAGAGAAATTGATGTTGTCTACAC------------TA--T----TCAGACTTCAGTTTCATTGCCTTTCAATTTGTTTGCCCC-CATGCAACA-------------------------------
droYak3 2L:13551920-13552079 - dya_92 candidate-rescued CT-------TCT----------------------------------TTGGCTTCGTTTTCTGGCGATCAAAAGAACTCG-----ACTCGACTCGAATC---C-AACCA----------ACTTC-ATGGGGC-ACACAAGCTATAAGGTAGAGAAATTGTTGTCTTCCACAC------------TA--T----TCAGACATCAGTTTAACTATCTTTCAATTTGTTTGCCCC-CACGCAACA-------------------------------
droEre2 scaffold_4929:5729700-5729856 + der_24 candidate-rescued AT-------TC-------------------------------------GGCTTCGTTTCCTGGCGATCAAAAGAACTCG-----ACTCGGCTCGAATC---C-CAGTA----------CCTCC-TTGGGGC-ACTCAAGCTATAAGGTAGAAAAATTGTTGTCTTCCACAC------------TA--T----TCGGACTGCAGTTTAACTATCTTTCAATTTGTTTGCCCC-CACGCAACA-------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
GG-------TCT-------------------------------------ATGGCGTTTACGGTCGTTTTGTCGTACT---------------------------------------------C-GTAGAGC-GCTCAAGTTATAAGGTAGAGATATTGTTGTCTTTT-TGC-ATATAGCACTCTG--TTATGAAAGACATCAAT-TCACTAGCTTTCAATTTGTACGCTTA-AATGCAGCAACACACAGTGGACAA-CGGACGATGGACGATSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
.............................................................................................................................................ATAAGGTAGAGATATTGTTGTCT............................................................................................................23114885.001488552089144114599
.............................................................................................................................................ATAAGGTAGAGATATTGTTGT..............................................................................................................2112016.002016170468701866
.............................................................................................................................................ATAAGGTAGAGATATTGTTGTC.............................................................................................................2211358.00135811091701321
.............................................................................................................................................ATAAGGTAGAGATATTGTTGTCTC...........................................................................................................241867.0086780390847
..............................................................................................................................................TAAGGTAGAGATATTGTTGTCT............................................................................................................221513.0051350460498
..............................................................................................................................................TAAGGTAGAGATATTGTTGTCTTC..........................................................................................................241301.0030130000298
.............................................................................................................................................ATAAGGTAGAGATATTGTTGTCTTC..........................................................................................................251130.0013010000129
.............................................................................................................................................ATAAGGTAGAGATATTGTTGTCC............................................................................................................231119.0011910001117
.............................................................................................................................................ATAAGGTAGAGATATTGTTG...............................................................................................................201112.0011240312093
.............................................................................................................................................ATAAGGTAGAGATATTGTTGTCTCC..........................................................................................................25188.00886001081
.............................................................................................................................................ATAAGGTAGAGATATTGTTGTCTT...........................................................................................................24188.00881022083
..............................................................................................................................................TAAGGTAGAGATATTGTTGTCTT...........................................................................................................23167.00674002061
..............................................................................................................................................TAAGGTAGAGATATTGTTGTC.............................................................................................................21154.00542001051
.............................................................................................................................................ATAAGGTAGAGATATTGTTGTCTTTC-........................................................................................................26134.00340000034
.............................................................................................................................................ATAAGGTAGAGATATTGTTGTCTTT..........................................................................................................25131.00310002029
..............................................................................................................................................TAAGGTAGAGATATTGTTGTCTTT..........................................................................................................24127.00270000027
..............................................................................................................................................TAAGGTAGAGATATTGTTGTCTTTC-........................................................................................................25126.00260000026
.............................................................................................................................................ATAAGGTAGAGATATTGTTGTCTCA..........................................................................................................25116.00160001015
..............................................................................................................................................TAAGGTAGAGATATTGTTGTCTTCC-........................................................................................................25116.00160000016
.............................................................................................................................................ATAAGGTAGAGATATTGTTGTCA............................................................................................................23116.00160001015
..............................................................................................................................................TAAGGTAGAGATATTGTTGTCTC...........................................................................................................23115.00151010013
..............................................................................................................................................TAAGGTAGAGATATTGTTGT..............................................................................................................20115.00151002012
.............................................................................................................................................ATAAGGTAGAGATATTGTTGC..............................................................................................................21110.0010100009
.............................................................................................................................................ATAAGGTAGAGATATTGTTGTCTA...........................................................................................................2418.008100007
.............................................................................................................................................ATAAGGTAGAGATATTGTTGTCTCCC-........................................................................................................2616.006000006
.............................................................................................................................................ATAAGGTAGAGATATTGTTGTCTTCC-........................................................................................................2616.006000006
.............................................................................................................................................ATAAGGTAGAGATATTGTTGTT.............................................................................................................2216.006000006
..............................................................................................................................................TAAGGTAGAGATATTGTTGTCTTCA-........................................................................................................2514.004000004
..............................................................................................................................................TAAGGTAGAGATATTGTTGTCC............................................................................................................2214.004000004
.............................................................................................................................................ATAAGGTAGAGATATTGTTGTCCC...........................................................................................................2414.004000004
...........................................................................CT---------------------------------------------C-GTAGAGC-GCTCAAGTT...................................................................................................................................1913.003000003
.............................................................................................................................................ATAAGGTAGAGATATTGTTGTCTTTT-........................................................................................................2613.003000003
..........................................................................ACT---------------------------------------------C-GTAGAGC-GCTCAAGTT...................................................................................................................................2013.003100002
...............................................................................................................................................AAGGTAGAGATATTGTTGTCT............................................................................................................2113.003200001
.............................................................................................................................................ATAAGGTAGAGATATTGTT................................................................................................................1913.003001002
.............................................................................................................................................ATAAGGTAGAGATATTGTC................................................................................................................1913.003000003
..............................................................................................................................................TAAGGTAGAGATATTGTTGTCTTA..........................................................................................................2412.002000002
.............................................................................................................................................ATAAGGTAGAGATATTGTTC...............................................................................................................2012.002000002
.............................................................................................................................................ATAAGGTAGAGATATTGTTGTCTTCA-........................................................................................................2612.002000002
.............................................................................................................................................ATAAGGTAGAGATATTGTTGTA.............................................................................................................2212.002000002
.............................................................................................................................................ATAAGGTAGAGATATTGTTGA..............................................................................................................2112.002000200
....................................................................................................................................................................................................ACATCAAT-TCACTAGCTTTCAA.....................................................2211.001100000
..............................................................................................................................................TAAGGTAGAGATATTGTTGTCTTTT-TC......................................................................................................2711.001000001
.............................................................................................................................................ATAAGGTAGAGATATTGTTGTCCCC..........................................................................................................2511.001000001
.............................................................................................................................................ATAAGGTAGAGATATTGT.................................................................................................................1811.001001000
.............................................................................................................................................ATAAGGTAGAGATATTGTTGTCTTA..........................................................................................................2511.001000001
.............................................................................................................................................ATAAGGTAGAGATATTGTTGTCTCG..........................................................................................................2511.001000001
....................................................................................................................................................................TTT-TGC-ATATAGCACTCTG--TTATGT...............................................................................2511.001000001
.............................................................................................................................................ATAAGGTAGAGATATTGTTGTG.............................................................................................................2211.001100000
.............................................................................................................................................ATAAGGTAGAGATATTGTTT...............................................................................................................2011.001001000
.............................................................................................................................................ATAAGGTAGAGATATTGTTGTCTTTA-A.......................................................................................................2711.001000001
.............................................................................................................................................ATAAGGTAGAGATATTGTTGTTC............................................................................................................2311.001000100
.............................................................................................................................................ATAAGGTAGAGATATTGTTGTCTTTT-CT......................................................................................................2811.001000001
..............................................................................................................................................TAAGGTAGAGATATTGTTGTCTCA..........................................................................................................2411.001000001
................................................................................................................................................AGGTAGAGATATTGTTGTCT............................................................................................................2011.001000001
.............................................................................................................................................ATAAGGTAGAGATATTGTTGTCTTTT-C.......................................................................................................2711.001000001
.............................................................................................................................................ATAAGGTAGAGATATTGTTGTCTTTT-T.......................................................................................................2711.001000100
..............................................................................................................................................TAAGGTAGAGATATTGTTG...............................................................................................................1911.001100000
..............................................................................................................................................TAAGGTAGAGATATTGTTGTT.............................................................................................................2111.001000001
.............................................................................................................................................ATAAGGTAGAGATATTGTTGTCTCCA-........................................................................................................2611.001000001
.............................................................................................................................................ATAAGGTAGAGATATTGTTGTAA............................................................................................................2311.001100000
...............................................................................................................................................AAGGTAGAGATATTGTTGTC.............................................................................................................2011.001000001
..............................................................................................................................................TAAGGTAGAGATATTGTTGTCTTTT-........................................................................................................2511.001000001
..............................................................................................................................................TAAGGTAGAGATATTGTTGTCTTCC-C.......................................................................................................2611.001000001
.............................................................................................................................................ATAAGGTAGAGATATTGTCT...............................................................................................................2011.001000001
droVir3
G-------------------------------------------------TTTCATTTTTCAGTGAATTAAACAACTCA-----ATTTA----CACACACAC-ACACA----------CATAAGAAAGGGCGCCTCAAATTATAAGGTAGAGAAATTGTTGTCTACT-TTACA----------TATGG----TGAGACATCAAT-TCACTAGCTTTCAATTTGTACGCCCA-AATGCAAC--------------------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.............................................................................................................................................ATAAGGTAGAGAAATTGTTGTCT............................................................................................................231452353.0045235343722417134983055795910172618101383231568429120323943379189263263231191604212413091328426856628584317648935243732626700000000010200177133028261343626316133181361231914315383110228
.............................................................................................................................................ATAAGGTAGAGAAATTGTTGTCC............................................................................................................23124475.00244751360483262911451252943827001400040217220141310419042207937294622343000016279700000000000000000800012490580002313207293110002
.............................................................................................................................................ATAAGGTAGAGAAATTGTTGTC.............................................................................................................22120497.002049717044127167160177260505953004100240111902297131718248821206892252081610309139500000000000000000401252307190054515327452471214
.............................................................................................................................................ATAAGGTAGAGAAATTGTTGT..............................................................................................................2118724.0087242038324512449643515164100320140036010321254626147810493601114125700141114970000000000000000000231420228107159191016470033
.............................................................................................................................................ATAAGGTAGAGAAATTGTTGTCTC...........................................................................................................2418340.0083403203061186154715448000200020747109221036796933289540601000061172000000000000000002000240000001121421820600000
..............................................................................................................................................TAAGGTAGAGAAATTGTTGTCT............................................................................................................2213286.003286504314312155408100250020000001641010207240179782540102001012140000000000000000000109600200010301000001
.............................................................................................................................................ATAAGGTAGAGAAATTGTTG...............................................................................................................2011084.0010840014051199488130500000010068009216312911348148058010021320000000000000000000011400310110010001011
.............................................................................................................................................ATAAGGTAGAGAAATTGTTGTCTT...........................................................................................................241691.0069100123480103111600000000002400120331057714851460020145000000000000000000000300000011102000000
.............................................................................................................................................ATAAGGTAGAGAAATTGTTGTCCC...........................................................................................................241497.0049760000761002900000000005300000003133257006500000820000000000000000000002500000000001000000
..............................................................................................................................................TAAGGTAGAGAAATTGTTGTCTA...........................................................................................................231431.00431000014317019500000000003700000003426143402300000310000000000000000000001800000020100000000
.............................................................................................................................................ATAAGGTAGAGAAATTGTTGTCTA...........................................................................................................241197.001970000513133121111002100000050010027137513030030511000000000000000000010300000010001000000
....................................................................................................................................................................................................ACATCAAT-TCACTAGCTTTCA......................................................211194.0019400101400000000000010190010000492413320120000036000000000000000000000100000000000000000
.............................................................................................................................................ATAAGGTAGAGAAATTGTTC...............................................................................................................201192.001921000122000480000000000130000000151532801100001240000000000000000000001000000000000000000
.............................................................................................................................................ATAAGGTAGAGAAATTGTTGTCTCT..........................................................................................................251167.001670000039011380000000000700000001520213050000019000000000000000000000700000000000000000
....................................................................................................................................................................................................ACATCAAT-TCACTAGCTTTCAA.....................................................221167.001670010140000000000000011000000144242045000000016000000000000000000000000000000000000000
.............................................................................................................................................ATAAGGTAGAGAAATTGTTGTTC............................................................................................................231166.0016620000170012000000000001800000001817826090000020000000000000000000000700000010002000000
.............................................................................................................................................ATAAGGTAGAGAAATTGTTGTCA............................................................................................................231164.001640061111460350000000100600202231114810040030150000000000000000000001800000103500000001
................................................................................................................................................AGGTAGAGAAATTGTTGTCT............................................................................................................201157.001570000128124030100000000013000000011932090000024000000000000000000000100000000000000000
.............................................................................................................................................ATAAGGTAGAGAAATTGTTGTCCT...........................................................................................................241138.0013810100700019000000000020000000013143180120000026000000000000000000000300000010000000000
.............................................................................................................................................ATAAGGTAGAGAAATTGTTGTCG............................................................................................................231110.001102510004019030100000000090000000162103000005000000000000000000000100000001100000000
..................................................................................................................................................GTAGAGAAATTGTTGTCT............................................................................................................18198.009800101180161900000000001200000009110505000019000000000000000000000000000000000000000
.............................................................................................................................................ATAAGGTAGAGAAATTGTT................................................................................................................19191.00910000016040900000001008000001012135805000009000000000000000000000000000000000000000
...............................................................................................................................................AAGGTAGAGAAATTGTTGTCT............................................................................................................21180.008000720009113000000000050000000101021202000006000000000000000000000100000000000000000
.............................................................................................................................................ATAAGGTAGAGAAATTGTTGTT.............................................................................................................22167.0067000003060180000000000600000016311403000003000000000000000000000300000000000000000
.............................................................................................................................................ATAAGGTAGAGAAATTGTTGTCTCA..........................................................................................................25162.006200000100016000000000080010000758203000017000000000000000000000300000000000000000
.............................................................................................................................................ATAAGGTAGAGAAATTGTCC...............................................................................................................20160.006010000300111000000000090000000765903000003000000000000000000000200000000000000000
.............................................................................................................................................ATAAGGTAGAGAAATTGTTGTCTTT..........................................................................................................25160.006000000007017000000000020000000762603000008000000000000000000000200000000000000000
.................................................................................................................................................GGTAGAGAAATTGTTGTCT............................................................................................................19147.004700000100516000000000040000000850101000006000000000000000000000000000000000000000
.............................................................................................................................................ATAAGGTAGAGAAATTGT.................................................................................................................18145.00450000020211000000000050000000753607000004000000000000000000000000000002000000000
.............................................................................................................................................ATAAGGTAGAGAAATTGTTGTA.............................................................................................................22141.00410010041009000100000080000020141400000003000000000000000000000000000100000010000
..............................................................................................................................................TAAGGTAGAGAAATTGTTGTC.............................................................................................................21138.00380080010407000000000010000000412503000001000000000000000000000100000000000000000
..............................................................................................................................................TAAGGTAGAGAAATTGTTGTCC............................................................................................................22134.00340030050006000000000000000000423204000004000000000000000000000100000000000000000
..............................................................................................................................................TAAGGTAGAGAAATTGTTGTCTC...........................................................................................................23134.00340010070118000000000020000000212201000005000000000000000000000100000000000000000
....................................................................................................................................................................................................ACATCAAT-TCACTAGCTTTC.......................................................20129.00290000010201000000000000000000551503000006000000000000000000000000000000000000000
.............................................................................................................................................ATAAGGTAGAGAAATTGTTGTCTTTC-........................................................................................................26129.002900000200010000000000020000000121402000005000000000000000000000000000000000000000
.............................................................................................................................................ATAAGGTAGAGAAATTGTTGTTCT...........................................................................................................24125.00250000010705000000000010000000210000000000000000000000000000000800000000000000000
.............................................................................................................................................ATAAGGTAGAGAAATTGTC................................................................................................................19124.002400000300011000000000010000000120400000002000000000000000000000000000000000000000
.............................................................................................................................................ATAAGGTAGAGAAATTGTTGTCTCTC-........................................................................................................26124.00240000020001000000000010000000563500000001000000000000000000000000000000000000000
.............................................................................................................................................ATAAGGTAGAGAAATTGTTGTAC............................................................................................................23123.00230000030203000000000040000000111004000003000000000000000000000100000000000000000
.............................................................................................................................................ATAAGGTAGAGAAATTGTTGTCTAA..........................................................................................................25123.00230000001030010000000030000032011000005020000000000000000000000000000010000000000
.............................................................................................................................................ATAAGGTAGAGAAATTGTTGC..............................................................................................................21120.00200000010804000000000030000000011001000001000000000000000000000000000000000000000
.............................................................................................................................................ATAAGGTAGAGAAATTGTTGTAA............................................................................................................23118.00180010001010010000000000000010000000010000000000000000000000000400000000103020011
..............................................................................................................................................TAAGGTAGAGAAATTGTTGTCTAT..........................................................................................................24116.00160000010300000000000010000000120500000001000000000000000000000200000000000000000
.............................................................................................................................................ATAAGGTAGAGAAATTGTTGTCTAT..........................................................................................................25115.00150000000330300100000000000030000000001010000000000000000000000000000000000000000
.............................................................................................................................................ATAAGGTAGAGAAATTGTTGTCTAAA-........................................................................................................26115.00150010100000000000000000000034000000005000000000000000000000000000100000000000000
.............................................................................................................................................ATAAGGTAGAGAAATTGTTGTTCC...........................................................................................................24115.00150000020003000000000000000000320102000002000000000000000000000000000000000000000
................................................................................................................................................AGGTAGAGAAATTGTTGTCC............................................................................................................20113.00130000060000000000000000000000100101000002000000000000000000000200000000000000000
............................................................................................................................................TATAAGGTAGAGAAATTGTTGTCT............................................................................................................24112.00120010000203000000000000000000111002000000000000000000000000000100000000000000000
................................................................................................................................................AGGTAGAGAAATTGTTGTC.............................................................................................................19111.00110000020002000000000000000000102000000004000000000000000000000000000000000000000
.............................................................................................................................................ATAAGGTAGAGAAATTGTTGTCTTA..........................................................................................................25111.00110000000015000000000010000000111000000001000000000000000000000000000000000000000
.............................................................................................................................................ATAAGGTAGAGAAATTGTTCC..............................................................................................................21110.00100000000003000000000000000001110102000001000000000000000000000000000000000000000
.............................................................................................................................................ATAAGGTAGAGAAATTGTTGTCTG...........................................................................................................24110.00100000010011000000000010000000120100000002000000000000000000000000000000000000000
.................................................................................................................................................GGTAGAGAAATTGTTGTCTC...........................................................................................................2019.0090000030001000000000020000000000001000002000000000000000000000000000000000000000
..................................................................................................................................................GTAGAGAAATTGTTGTCC............................................................................................................1819.0090000000007000000000010000000010000000000000000000000000000000000000000000000000
.............................................................................................................................................ATAAGGTAGAGAAATTGTTGTCCCT..........................................................................................................2519.0090000000002000000000010000000210200000001000000000000000000000000000000000000000
droGri2
GT-------TCT-------------------------------------T-TTAAATTTCAGTCTACA-----AACTAAGAGCAGGTTA----CTTTC---A-TAACA---------CACT---CAAGAGC-TCTCAGATTATAAGGTAGAGATTTTGTTGTCTTCTATTA------------TA-------AAAGACATCAAT-TCACTAGCTTTCAATTTGTATGCTCA-AATGCAAC--------------------------------SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
.............................................................................................................................................ATAAGGTAGAGATTTTGTTGTCT............................................................................................................2311234.001234341200
.............................................................................................................................................ATAAGGTAGAGATTTTGTTGT..............................................................................................................211282.002827275
.............................................................................................................................................ATAAGGTAGAGATTTTGTTGTC.............................................................................................................221100.00100397
.............................................................................................................................................ATAAGGTAGAGATTTTGTTGTCC............................................................................................................2318.00808
..............................................................................................................................................TAAGGTAGAGATTTTGTTGTCT............................................................................................................2217.00743
.............................................................................................................................................ATAAGGTAGAGATTTTGTTGTCG............................................................................................................2315.00505
.............................................................................................................................................ATAAGGTAGAGATTTTGTTG...............................................................................................................2015.00505
.............................................................................................................................................ATAAGGTAGAGATTTTGTTGTCA............................................................................................................2312.00202
.............................................................................................................................................ATAAGGTAGAGATTTTGTTGTA.............................................................................................................2212.00202
.............................................................................................................................................ATAAGGTAGAGATTTTGTTGTCTT...........................................................................................................2411.00101
.............................................................................................................................................ATAAGGTAGAGATTTTGTCT...............................................................................................................2011.00101
...............................................................................................................................................AAGGTAGAGATTTTGTTGTCT............................................................................................................2111.00110
..............................................................................................................................................TAAGGTAGAGATTTTGTTGTCTT...........................................................................................................2311.00101
.............................................................................................................................................ATAAGGTAGAGATTTTGTTGTCTG...........................................................................................................2411.00110
droWil2
A------------------------------------------------------------------------------------------------------------------------------GGAC-CCTCAAGTTATAAGGTAGAGAAAATGTTGTCTTTA-TAT-TTGTAACAAT-TG--T----TAAGACATCACTTTCACTAGCTTTCAATTTGTCTGCTCCACATGCAACAACATATAAT--ACAATCAAACAA--AATGATSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
.............................................................................................................................................ATAAGGTAGAGAAAATGTTGTCT............................................................................................................2311876.001876261117621463
.............................................................................................................................................ATAAGGTAGAGAAAATGTTGTC.............................................................................................................2211235.00123512411791327
.............................................................................................................................................ATAAGGTAGAGAAAATGTTGTCC............................................................................................................23153.0053714302
..............................................................................................................................................TAAGGTAGAGAAAATGTTGTCT............................................................................................................22132.0032012812
.............................................................................................................................................ATAAGGTAGAGAAAATGTTGT..............................................................................................................21626.671600115603
.............................................................................................................................................ATAAGGTAGAGAAAATGTTGTCA............................................................................................................23123.0023012200
...........................................................................................................................................................................................T----TAAGACATCACTTTCACTAGC...........................................................22111.001112413
.............................................................................................................................................ATAAGGTAGAGAAAATGTTG...............................................................................................................2066.5039003900
.............................................................................................................................................ATAAGGTAGAGAAAATGTTGTCTT...........................................................................................................2415.00500500
...........................................................................................................................................................................................T----TAAGACATCACTTTCACTAG............................................................2115.00511300
.............................................................................................................................................ATAAGGTAGAGAAAATGTTGTCTA...........................................................................................................2414.00400301
.............................................................................................................................................ATAAGGTAGAGAAAATGTTGTCTC...........................................................................................................2413.00300201
............................................................................................................................................TATAAGGTAGAGAAAATGTTGTCT............................................................................................................2413.00300201
.....................................................................................................................................................................................................CATCACTTTCACTAGCTTTCA......................................................2113.00300201
............................................................................................................................................TATAAGGTAGAGAAAATGTTGTC.............................................................................................................2313.00300300
.............................................................................................................................................ATAAGGTAGAGAAAATGTTGTCG............................................................................................................2313.00310200
.............................................................................................................................................ATAAGGTAGAGAAAATGTTGTCCC...........................................................................................................2412.00200200
.....................................................................................................................................................................................................CATCACTTTCACTAGCTTTCAA.....................................................2212.00200200
...........................................................................................................................................................................................T----TAAGACATCACTTTCACTA.............................................................2011.00100001
...........................................................................................................................................................................................T----TAAGACATCACTTTCACTAGCA..........................................................2311.00100100
.....................................................................................................................................................................................................CATCACTTTCACTAGCTTTC.......................................................2011.00100100
................................................................................................................................................................................................TAAGACATCACTTTCACTAGCT..........................................................2211.00100001
...........................................................................................................................................................................................T----TAAGACATCACTTTCACTAGCG..........................................................2311.00100100
...........................................................................................................................................................................................T----TAAGACATCACTTTCACTAGCT..........................................................2311.00110000
...............................................................................................................................................AAGGTAGAGAAAATGTTGTC.............................................................................................................2011.00100100
.............................................................................................................................................ATAAGGTAGAGAAAATGTTGTT.............................................................................................................2260.83500500
.............................................................................................................................................ATAAGGTAGAGAAAATGTT................................................................................................................1960.67400400
.............................................................................................................................................ATAAGGTAGAGAAAATGTTGTA.............................................................................................................2260.33200200
.............................................................................................................................................ATAAGGTAGAGAAAATGT.................................................................................................................1860.17100001
............................................................................................................................................TATAAGGTAGAGAAAATGTTGT..............................................................................................................2260.17100100
..............................................................................................................................................TAAGGTAGAGAAAATGTTGT..............................................................................................................2060.17101000
.............................................................................................................................................ATAAGGTAGAGAAAATGTCT...............................................................................................................20100.10100100
droAna3
GA-------TCA---------CTGGTTACTGAGGTTGTTTT-GTCATAAGCTTCGTTTTCTGGCGATCAAATACGCTCG-----ACTTT----GGGCC---C-AACCA----------CCTGGCCGAGGGC-ACTCAAGCTATAAGGTAGAGAAAATAATGTCTTCGTCTC------------CA--A----ATAGACATCAATTTCCCTAGCTTGCATTTTGCCTGCCCC-CAAGCAACAA------------------------------SizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.............................................................................................................................................ATAAGGTAGAGAAAATAATGTCT............................................................................................................2311274.001274800261118122
.............................................................................................................................................ATAAGGTAGAGAAAATAATGTC.............................................................................................................2211238.001238261057111044
.............................................................................................................................................ATAAGGTAGAGAAAATAATGT..............................................................................................................211170.0017040081526
.............................................................................................................................................ATAAGGTAGAGAAAATAATG...............................................................................................................20179.00794003684
.....................................................................................................................................................................................................CATCAATTTCCCTAGCTTGCAT.....................................................22111.0011000083
.............................................................................................................................................ATAAGGTAGAGAAAATAAT................................................................................................................1916.006000042
..............................................................................................................................................TAAGGTAGAGAAAATAATGTC.............................................................................................................2114.004400000
.............................................................................................................................................ATAAGGTAGAGAAAATAATGTCC............................................................................................................2313.003010020
.............................................................................................................................................ATAAGGTAGAGAAAATAATGTCA............................................................................................................2313.003000111
.............................................................................................................................................ATAAGGTAGAGAAAATAATGTT.............................................................................................................2213.003000030
............................................................................................................................................TATAAGGTAGAGAAAATAATGT..............................................................................................................2212.002000020
..............................................................................................................................................TAAGGTAGAGAAAATAATGTCT............................................................................................................2212.002100010
.............................................................................................................................................ATAAGGTAGAGAAAATAATGTCTTTT.........................................................................................................2612.002100010
.............................................................................................................................................ATAAGGTAGAGAAAATAATGA..............................................................................................................2112.002000020
.............................................................................................................................................ATAAGGTAGAGAAAATAATGTCTT...........................................................................................................2411.001000010
.............................................................................................................................................ATAAGGTAGAGAAAATAATGTAA............................................................................................................2311.001000010
.....................................................................................................................................................................................................CATCAATTTCCCTAGCTTGCATT....................................................2311.001000100
.............................................................................................................................................ATAAGGTAGAGAAAATAATGTCTTT..........................................................................................................2511.001000010
.....................................................................................................................................................................................................CATCAATTTCCCTAGCTTGCA......................................................2111.001000010
....................................................TCGTTTTCTGGCGATCAAATA.......................................................................................................................................................................................................2111.001000010
......................................................................................................................................................................................................ATCAATTTCCCTAGCTTGCAT.....................................................2111.001000010
....................................................................................................................................................................................................ACATCAATTTCCCTAGCTTGCAT.....................................................2311.001000010
.............................................................................................................................................ATAAGGTAGAGAAAATAATGG..............................................................................................................2111.001000010
....................................................................................................................................................................................................ACATCAATTTCCCTAGCTTGCA......................................................2211.001100000
...................................................TTCGTTTTCTGGCGATCAAATT.......................................................................................................................................................................................................2211.001000010
.............................................................................................................................................ATAAGGTAGAGAAAATA..................................................................................................................1711.001000100
.............................................................................................................................................ATAAGGTAGAGAAAATAATGC..............................................................................................................2111.001000010
...............................................................................................................................................AAGGTAGAGAAAATAATGTC.............................................................................................................2011.001000010
..............................................................................................................................................TAAGGTAGAGAAAATAATGT..............................................................................................................2011.001100000
.....................................................................................................................................................................................................CATCAATTTCCCTAGCTTGC.......................................................2011.001000100
droBip1
GA-------TCA---------CTGGTTACTGAGGTTGTGTC-TGCATCAGCTTCATTTTCTGGCTATCAAATACACACG-----ACTTT----GGGCC---C-AACCA----------CCTGGTCGGGGGC-ACCCAAGCTATAAGGTAGAGAAAGTAATGTCTTCGTCTC------------CA--A----ATAGACATCAATTTCCCTAGCTTGCAGTTTGCTTGCCCT-CAAGCAAC--------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
AA-------TC-------------------------------------GACTTCGTTTTCTGGCGATCAAACAAACTCG-----TCTCG----GAACT---CCAACATCCTGGAACTCCCTGC-CCAAGGC-ACTCAAGCTATAAGGTAGAGAAATGGCTGTCTTG-ACTC------------TAAGC----TCGGACATCAATTTCACTAGCTTTCAATTTGTCTGCCCC-CACGCAACA-------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
GA------------------------------------------------CTTCGTTTTCTGGCGATCAAACAAACTCG-----GCTCG----GAAGC---C-ATCC------------CCCC-ACTGGGC-AGTCAAGCTATAAGGTAGAGAAACTCTTGTCTTCCCCTA------------CA--T----CCAGACATCAGTTTCACTAGCTTTCAATTTGTCTGCCCC-CACGCAACAAGAT--AGTGATTAC-C---CGATGGA---CSizeHit CountTotal NormTotal
No Reads
droEle1
GG-------T----------------TACTGAGGTTGTTCT-CGCTTCGGCTTCGTTTTCTGGAGATCAAATAAACTCG-----A----------ACC---C-AATTA----------CCT----CGGGGC-ACCCAAGCTATAAGGTAGAGAAAATGTTGTCTTCC-CAC------------TA--C----TCAGACATCAATTTCACTAGCTTTCAATTTGTCTGC--------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
G------------------------------------------------------TTTTCTGGCGATCAAATAAACTCG-----GCTTT----GAGTT---C-AACTA----------CCTCC-ACGGGGC-ACTCAAGCTATAAGGTAGAGAAACTGTTGTCTTCCATAC------------TA--C-----TGGACATCACTTTCACTAGCTTTCAGCTTGTTTGC--------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
GGGTCGAGTTCTCTTTGATCACCGGTTACTGATGTTGTTTTCCGACGCGGCTTCGTTTTCTGGCGATCAAACAAACTCG-----ACCCA----AAGGC---C-AACCA----------ACC-C-GTCGGGC-ACTCAAGCTATAAGGTAGAGAAATTGTTGTCCCACACTC------------TA--T----TCAGACATCAATTTCACTAGCTTTCAATTTGACTGCCCC-CATGCATCA-------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
GC-------TTT------------------------------------TTCTTCGTTTTCTGGCGATCAAATAAACTCG-----ACTTA----AAACC---C-AACCA----------ACTCG-ACGGGGC-ACCCAAGCTATAAGGTAGAGAAACTGTTGTCTGGCACTC------------AA--T----TCAGACATCAATTTCACTAGCTTTCAATTTGTCTGCCCC-CACGCAACA-------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
-------------------------------------------------------------------------------------------------------------------------------GGGC-ACACAAGCTCTAAGGTAGAGAAAATGTTGTCTTTGACGC------------GT--T----CTAGACATCAATTTCCCTAGCTTTCAATTTGTCTGCCCC-CACGCAAC--------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
-----------------------------------------------------------------------------------------------------------------------------TGGGGC-ACTCAGGCTATAAGGTAGAGAAATTGATGCTGTCTACAC------------TA--T----TCAGACTTCAGTTTCATTACCTTTCAATTTGTTTGCCCC-CATGCAACA-------------------------------SizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.............................................................................................................................................ATAAGGTAGAGAAATTGATGCTGTC..........................................................................................................25141535.00415350000050001120100000002223000000000000431703330496035158362044279419335115852500000000000000000000000122113033000009001380223004291008052245002700000010000000232100005170044752063902033121057747347500000014032015020210113410027164040140039087659479734802711230056830001531009591004994357960158752611624668122546640831901300000960400160901070000012003001001100100155115816732017723804001337535481132756402810537133563701788010450015150524371212103613044919953116192249348647171550
.............................................................................................................................................ATAAGGTAGAGAAATTGATGCTGTCT.........................................................................................................26113984.001398400000000000400000000213000000000000155510131320930200121041722816331600000000000000000000000010000000000001002100000030000000001200000000000000000000000200000010018561133268105211116130000000000010000003200110000000068817194223260015711024250100011370300000120821664122806398307114332058420000000110100120470015000000001010000000100143858107969112380000000107423122601218613711215836322883430215641157005010021007121543826505215103400
.............................................................................................................................................ATAAGGTAGAGAAATTGATGCTG............................................................................................................23112620.001262000000200000400000000301240000000000012491071432871141289410251527228000000000000000000000001001000000000030012003000042000000060000011000000000000000010000011002770832962196271816160000040040410020004600004600013511393212477283200339013284900000923045100177515032172544819112231114150000000000010000027008000000000010000000200594251134790422020002934314239221122191158161179320528200438392004000000101262375643682666113130
.............................................................................................................................................ATAAGGTAGAGAAATTGATGCTGT...........................................................................................................2417426.0074260000000000010100000005000000000000002527611124651351073924521161300000000000000000000000010100050000003009013130027210020121360029010000000000000000011000010001024632260531113400000005020000000001001107030400382216222750054139180000012274110001001092271183252978284491356530000000001000000012008000000000000000000000774751347247952500000110121788211191429175642197769490034391151000000100014249222128333206100
.............................................................................................................................................ATAAGGTAGAGAAATTGATGCT.............................................................................................................2212870.0028700000000000000000000011029000000000003141425429430210610127200000000000000000000000001000000000000002002000000001010030000000000000000000000000000000004121591622357700000000000000000001000011000434599368718005202881300000290211004203171313851037144208232800000000000000000100100000000000000000000020922852117000003010136410033862214582171600113031202000000011606119616152301000
.............................................................................................................................................ATAAGGTAGAGAAATTGATG...............................................................................................................2011202.001202000000000000000000000007400000000000201022012100121417200000000000000000000000000000000000000000200100000000000001000000000000000000000000000000000132243200000000000010000000001000000000020060117323005001461300000124000000001424030121281017000000000000000001003000000000000000000000217100821000000210014220212171615936760003160020000000091232201400010
.............................................................................................................................................ATAAGGTAGAGAAATTGATGC..............................................................................................................2111111.001111000000000001000000000004100000000000150112114010811090100000000000000000000000000000000000001002001000100000000000000000000000000000001000000000002693525201000000200000010000000000000000110394135300026010190000000000000000164015950625705700000000000000000500100001000000000000000083404010000000000000134610015771716150005812000000000001202884961412000
....................................................................................................................................................................................................ACTTCAGTTTCATTACCTTTCA......................................................221745.00745000001000006000000000009700000000000021000110002011110000200000000000000000002222030000000062036103000200200001122110010000000000000000000000000000000430280000000000000000101002401000000000028158000014020000000000000000001300281844573315693400000000000000000000100000000000000000000063500070200000010000100000000150200000000000000000000000100000
..............................................................................................................................................TAAGGTAGAGAAATTGATGCTGTCT.........................................................................................................251608.0060800000000000000000000000000000000000010001011113020030000000000000000000000000000000000000010030000000000000000200000000000000000000000000000000010802200300000000030000000000100000000050037151000060270000000600000000045142031117300000000000000000200000000000000000000000013421101318000000000016003171412121940001730000000000020832571600000
.............................................................................................................................................ATAAGGTAGAGAAATTGAT................................................................................................................191326.00326000000000000000000000004200000000000000001000001000010000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000141077000026077000000000000000000100002401010000000000000000010000000000000000000000000212000000000100000150000001353600010000000000002020000100000
.............................................................................................................................................ATAAGGTAGAGAAATTGATGCTGTT..........................................................................................................251250.0025000000000000000000000000000000000000000000111000002240000000000000000000000000000000000000000102000000001000000010000000000000000000000000000000000102240001000000000000000000110000000000001509000030500000001000000000111321042010000000000000000000002000000000000000000000240000000000000000021010002710591700072000000000000001100100000
.............................................................................................................................................ATAAGGTAGAGAAATTGA.................................................................................................................181217.0021700000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000010211000000000000000000000000000001300010027048100070462200000100200002001030001000000000000100000000000000000000000000000000000000000000000010003000000046217000400000000000020160000400000
.....................................................................................................................................................................................................CTTCAGTTTCATTACCTTTCAA.....................................................221200.002000000010000000000000000067000000000000000000000000000000000000000000000000000000000000000000000501800000000000006000200000000000000000000000000000001003000000000000000000010320000000000003302800003011000000000000000001000324105083000000000000000000000000000000000000000000160000000000000000010000002030000020000000000000010000000000
.....................................................................................................................................................................................................CTTCAGTTTCATTACCTTTCA......................................................211182.001820000000000000000000000062000000000000010000000001000000000000000000000000000000000000000000000101200000000000000000300000000000000000000000000000000001000000000000000100100000001000000000912710001301800000000000000000020022162044000000000000000000001000000000000000000000070010010000010000000000000111000001000000000000000000000000
..............................................................................................................................................TAAGGTAGAGAAATTGATGCTGTC..........................................................................................................241148.001480000000000000000000000000000000000010000010010000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000001010120000000000001000000000010000000006004070200306000000000000002000000000000210000000000000000000000000000000000000000001603020000000000000100000142583200030000000000000023112900000
.............................................................................................................................................ATAAGGTAGAGAAATTGATGCTGTA..........................................................................................................251142.001420000000000030000000000000000000000000000009011003150000000000000000000000000000000000000000002000000000000000010000000000000000000000000000000000010110100000000000000000000110000000000006070000101000000000000000003000000100000000000000000000010000000000000000000000002001020000000100000100010012671400020000000000001020101000000
..............................................................................................................................................TAAGGTAGAGAAATTGATGCTG............................................................................................................221139.0013900000000000000000000000100000000000010100010010000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000060000000000000000000020050900006015000000000000004812300000100000000000000000000010000000000000000000000000401150300000000000000102121353200010000000000000000022300000
....................................................................................................................................................................................................ACTTCAGTTTCATTACCTTTCAA.....................................................231123.001230000000000010000000000090000000000000000000000000000000000000000000000000000000000000000001007104000101000000040000000000000000000000000000000000000000300000000000000000001200000000000003010000030800000000000000000000010447110165000000000000000000000000000000000000000000050000000000000000000000000010000000000000000000000000100000
....................................................................................................................................................................................................ACTTCAGTTTCATTACCTTTC.......................................................21191.009100000000000000000000000170000000000000000000000000000000010000000000000000000100000000000000003000000001000000010002000000000000000000000000000000000100100000000000000000000000010000000005070000400000000000000000000100235250571000000000000000000000000000000000000000001100001000000000000000000000120000000000000000000000000000000
.............................................................................................................................................ATAAGGTAGAGAAATTGATGCTGTG..........................................................................................................25170.00700000000000000000000000000000000000000010015000105000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000020010000000000000000000000010000000002000100000000000000000000000101001100000000000000000000010010000000000000000000001010001000000000000100100001246600000000000000000000000000000
.............................................................................................................................................ATAAGGTAGAGAAATTGATGCTGTCA.........................................................................................................26164.00640000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000001000000000000000000000000000000000000000000000011001000000000000000000000100000000000001020000005000000000000000001000122211200000000000000000000000000000000000000001000500000100000000000100000010252000010000000000001000000000000
..............................................................................................................................................TAAGGTAGAGAAATTGATGCTGT...........................................................................................................23159.00590000000000000000000000000000000000000000010000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000001000000000000000000000000030000102000000000000000001101001000000000000000000000000000000000000000000000000310000000000000000000000000360000020000000100000000000200000
.............................................................................................................................................ATAAGGTAGAGAAATTGATGCTGTCTT........................................................................................................27144.00440000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010010000000000000000000000000000000000006050000005000000000000000000000100111200000000000000000010000000000000000000000000400000000000000000200000000111000000000000000001000000000000
...................................................................................................................................................TAGAGAAATTGATGCTGTC..........................................................................................................19142.004200000000000000000000000000000000000000000000001000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000014000000201000000000000000002711100000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................ATAAGGTAGAGAAATTGATGCTT............................................................................................................23142.00420000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000002080500001000000000000000000100000100000000000000000000010000000000000000000000000300010000000000000100000000101000010000000000000020001000000
.............................................................................................................................................ATAAGGTAGAGAAATTGATGCTGTCC.........................................................................................................26140.00400000000000010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000004050000000000000000000000001101111000020000000000000000000000000000000000000000000200000000000000000100000101113000000000000000000000100000000
.............................................................................................................................................ATAAGGTAGAGAAATTGATGCTGTCG.........................................................................................................26130.00300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000001000000000000000000100000000000000000000000000000010000000000000000000001200000000000000000000100101161100000000000000000000000000000
.............................................................................................................................................ATAAGGTAGAGAAATTGATGCTGC...........................................................................................................24126.00260000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000001020000002000000000000000000001000000000000000000000000000010000000000000000000000100000000000000000000000000060000020000000000000000000000000
.............................................................................................................................................ATAAGGTAGAGAAATTGATGCTGG...........................................................................................................24125.00250000000000000000000000000000000000000000001000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002200000000000000000000000000161000000000000000000000000000000
.............................................................................................................................................ATAAGGTAGAGAAATTGATGCTC............................................................................................................23121.0021000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000005000000200000000000000000000000010000000000000000000000000000000000000000000000010000000000000000000001000070000010000000000000001000000000
.............................................................................................................................................ATAAGGTAGAGAAATTGATGCTGA...........................................................................................................24119.0019000000000000000000000000000000000000000000000010011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201000000100000000000000000010000020000000000000000000000000000000000000000000000010001000000000000001000000050000000000000000000010000000000
..............................................................................................................................................TAAGGTAGAGAAATTGATGCT.............................................................................................................21117.0017000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000200000000000000000000200001000000000000000000000100000000000000000000000000000000000000000000000000000000000001000000000000000000000060000000000000000000000020000000
.............................................................................................................................................ATAAGGTAGAGAAATTGATGCATC...........................................................................................................24116.0016000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000079000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................ATAAGGTAGAGAAATTGATGCTGTCTATC......................................................................................................29115.0015000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000078000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................AGAGAAATTGATGCTGTC..........................................................................................................18114.0014000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000510000020000000000000000000210000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
....................................................................................................................................................................................................ACTTCAGTTTCATTACCTTT........................................................20113.0013000000000000000000000003000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000010302000000000010000000000000000000000000000000000000000000
.............................................................................................................................................ATAAGGTAGAGAAATTGATGCTGTCTA........................................................................................................27111.0011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000200000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000020000000000000000000010000000000
..............................................................................................................................................TAAGGTAGAGAAATTGATG...............................................................................................................19111.0011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
.............................................................................................................................................ATAAGGTAGAGAAATTGATGCTGTCTC........................................................................................................27111.0011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000200000000000000000010000000000000011000000000000000000000000000000000000000000000000000000000000000030000000000000000000000001000000
.............................................................................................................................................ATAAGGTAGAGAAATTGATGCTGGT..........................................................................................................25110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000070300000000000000000000000000000
.............................................................................................................................................ATAAGGTAGAGAAATTGATGCTA............................................................................................................23110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000101000000200000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000011000010000000000000000000000000
.............................................................................................................................................ATAAGGTAGAGAAATTGATT...............................................................................................................2019.009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000
...................................................................................................................................................TAGAGAAATTGATGCTGTCT.........................................................................................................2019.009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000302000000000000000000000000300000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................AAGGTAGAGAAATTGATGCTGTC..........................................................................................................2319.009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000010000000000000000000000000000000000000000020000000000000000000000000000100000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000
droSim2
-----------------------------------------------------------------------------------------------------------------------------TGGGGC-GCTCAGGCTATAAGGTAGAGAAATTGATGTTGTCTACAC------------TA--T----TCAGACTTCAGTTTCATTGCCTTTCAATTTGTTTGCCCC-CCTGCAACA-------------------------------SizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
.............................................................................................................................................ATAAGGTAGAGAAATTGATGTTGT...........................................................................................................2415415.00541504003202837001340265145000
.............................................................................................................................................ATAAGGTAGAGAAATTGATGTT.............................................................................................................2214495.004495122039713672101683154076000
.............................................................................................................................................ATAAGGTAGAGAAATTGATGTTG............................................................................................................2313519.0035190201641101300570153356000
.............................................................................................................................................ATAAGGTAGAGAAATTGATGTTGTC..........................................................................................................2512980.00298002431956512239001226142444000
.............................................................................................................................................ATAAGGTAGAGAAATTGATGTTGTCT.........................................................................................................261663.0066305221101637109515452000
.............................................................................................................................................ATAAGGTAGAGAAATTGATGT..............................................................................................................211241.00241020047333001701165000
.............................................................................................................................................ATAAGGTAGAGAAATTGATG...............................................................................................................201190.00190030011410000100062000
.............................................................................................................................................ATAAGGTAGAGAAATTGATGTTT............................................................................................................231168.001680000001100200164000
.............................................................................................................................................ATAAGGTAGAGAAATTGA.................................................................................................................18199.0099000095000002002000
.............................................................................................................................................ATAAGGTAGAGAAATTGATGTTGTT..........................................................................................................25191.0091010000000000090000
.............................................................................................................................................ATAAGGTAGAGAAATTGATGTTA............................................................................................................23188.0088000000000000088000
.............................................................................................................................................ATAAGGTAGAGAAATTGAT................................................................................................................19182.0082000074200001005000
....................................................................................................................................................................................................ACTTCAGTTTCATTGCCTTTCA......................................................22161.00610100380100000021000
.............................................................................................................................................ATAAGGTAGAGAAATT...................................................................................................................16138.0038000000000038000000
.............................................................................................................................................ATAAGGTAGAGAAATTGATGTTGTCA.........................................................................................................26130.0030000000000010029000
....................................................................................................................................................................................................ACTTCAGTTTCATTGCCTTTC.......................................................21119.0019000018000000001000
.....................................................................................................................................................................................................CTTCAGTTTCATTGCCTTTCA......................................................21118.0018030040010000010000
....................................................................................................................................................................................................ACTTCAGTTTCATTGCCT..........................................................18117.0017000016100000000000
.............................................................................................................................................ATAAGGTAGAGAAATTGATGTTGTA..........................................................................................................25117.0017000000000000017000
..............................................................................................................................................TAAGGTAGAGAAATTGATGTTGTCT.........................................................................................................25115.0015020000000020011000
.............................................................................................................................................ATAAGGTAGAGAAATTGATGTTGA...........................................................................................................24114.0014000000000000014000
.....................................................................................................................................................................................................CTTCAGTTTCATTGCCTTTCAA.....................................................22112.001201005001000005000
..............................................................................................................................................TAAGGTAGAGAAATTGATGTTG............................................................................................................22110.001000000000001009000
....................................................................................................................................................................................................ACTTCAGTTTCATTGCCTTTCAA.....................................................23110.001000000001000009000
.............................................................................................................................................ATAAGGTAGAGAAATTGATGTA.............................................................................................................22110.0010000000000000010000
..............................................................................................................................................TAAGGTAGAGAAATTGATGTTGTC..........................................................................................................2419.00900000010000008000
..............................................................................................................................................TAAGGTAGAGAAATTGATGTTGT...........................................................................................................2319.00900000001001007000
.............................................................................................................................................ATAAGGTAGAGAAAT....................................................................................................................1518.00800000000008000000
.............................................................................................................................................ATAAGGTAGAGAAATTGATGTTGTCC.........................................................................................................2617.00705100000000001000
.............................................................................................................................................ATAAGGTAGAGAAATTGATGTTAA...........................................................................................................2416.00600000000000006000
.............................................................................................................................................ATAAGGTAGAGAAATTGATGTG.............................................................................................................2216.00600000000001005000
.............................................................................................................................................ATAAGGTAGAGAAATTGATGTTGC...........................................................................................................2415.00502000000001002000
.....................................................................................................................................................................................................CTTCAGTTTCATTGCCTT.........................................................1815.00500005000000000000
....................................................................................................................................................................................................ACTTCAGTTTCATTGCCTT.........................................................1915.00500005000000000000
....................................................................................................................................................................................................ACTTCAGTTTCATTGCCTTT........................................................2015.00500003000000002000
.............................................................................................................................................ATAAGGTAGAGAAATTGATGTTGTCTT........................................................................................................2714.00401000000000003000
.............................................................................................................................................ATAAGGTAGAGAAATTGATGTTGTCTA........................................................................................................2714.00400001000000003000
.............................................................................................................................................ATAAGGTAGAGAAATTGATGTTGG...........................................................................................................2414.00401000000000003000
..............................................................................................................................................TAAGGTAGAGAAATTGATGTT.............................................................................................................2113.00300000000000003000
.............................................................................................................................................ATAAGGTAGAGAAATTG..................................................................................................................1713.00300000000002001000
.............................................................................................................................................ATAAGGTAGAGAAATTGATGTTGTCTAA.......................................................................................................2813.00300000000000003000
.............................................................................................................................................ATAAGGTAGAGAAATTGATGTTC............................................................................................................2313.00300000000001002000
.............................................................................................................................................ATAAGGTAGAGAAATTGATGTTGTG..........................................................................................................2513.00300000000000003000
.............................................................................................................................................ATAAGGTAGAGAAATTGAAA...............................................................................................................2013.00300000000000003000
.....................................................................................................................................................................................................CTTCAGTTTCATTGCCTTTC.......................................................2013.00300001000000002000
...............................................................................................................................................AAGGTAGAGAAATTGATG...............................................................................................................1812.00200002000000000000
.............................................................................................................................................ATAAGGTAGAGAAATTGATGTTGTAA.........................................................................................................2612.00200000000000002000
.............................................................................................................................................ATAAGGTAGAGAAATTGATGTTGTCG.........................................................................................................2612.00202000000000000000
................................................................................................................................................AGGTAGAGAAATTGATGTT.............................................................................................................1912.00200000000000002000
.............................................................................................................................................ATAAGGTAGAGAAATTGATA...............................................................................................................2012.00200000000000002000
.............................................................................................................................................ATAAGGTAGAGAAATTGATT...............................................................................................................2012.00200000000000002000
................................................................................................................................................AGGTAGAGAAATTGATGTTGT...........................................................................................................2112.00200000000000002000
..............................................................................................................................................TAAGGTAGAGAAATTGATGTTGTA..........................................................................................................2412.00200000000000002000
.............................................................................................................................................ATAAGGTAGAGAAATTGATGTTGAAA.........................................................................................................2611.00100000000000001000
...............................................................................................................................................AAGGTAGAGAAATTGATGTTG............................................................................................................2111.00100001000000000000
.............................................................................................................................................ATAAGGTAGAGAAATTGATGTTGTCTTT.......................................................................................................2811.00100000000000001000
....................................................................................................................................................AGAGAAATTGATGTTGTCT.........................................................................................................1911.00100000000001000000
..............................................................................................................................................TAAGGTAGAGAAATTGATG...............................................................................................................1911.00100001000000000000
.............................................................................................................................................ATAAGGTAGAGAAATTGATGTTAG...........................................................................................................2411.00100000000000001000
....................................................................................................................................................AGAGAAATTGATGTTG............................................................................................................1611.00100000000001000000
.....................................................................................................................................................................................................CTTCAGTTTCATTGCCTTTCAAA....................................................2311.00100000000000001000
...............................................................................................................................................AAGGTAGAGAAATTGATGTTGTCAT........................................................................................................2511.00100000000000001000
.............................................................................................................................................ATAAGGTAGAGAAATTGATGTTGGAC.........................................................................................................2611.00100000000000001000
....................................................................................................................................................AGAGAAATTGATGTTGT...........................................................................................................1711.00100000000001000000
.............................................................................................................................................ATAAGGTAGAGAAATTGATGTGT............................................................................................................2311.00100000000001000000
....................................................................................................................................................AGAGAAATTGATGTTGTC..........................................................................................................1811.00100000000001000000
..............................................................................................................................GGGGC-GCTCAGGCTATAAGGTA...........................................................................................................................2211.00100001000000000000
..............................................................................................................................................TAAGGTAGAGAAATTGATGTTGTCC.........................................................................................................2511.00101000000000000000
................................................................................................................................................................................................TCAGACTTCAGTTTCATTGCCT..........................................................2211.00100100000000000000
...................................................................................................................................................TAGAGAAATTGATGTTGTC..........................................................................................................1911.00100000000001000000
......................................................................................................................................................................................................TTCAGTTTCATTGCCTTTCA......................................................2011.00100000000000001000
...............................................................................................................................................AAGGTAGAGAAATTGATGTTGTC..........................................................................................................2311.00100000000000001000
................................................................................................................................................AGGTAGAGAAATTGATGTTGTC..........................................................................................................2211.00100000000001000000
.....................................................................................................................................................................................................CTTCAGTTTCATTGCCTTT........................................................1911.00100001000000000000
...................................................................................................................................................TAGAGAAATTGATGTT.............................................................................................................1611.00100000000001000000
.....................................................................................................................................................GAGAAATTGATGTTGTC..........................................................................................................1711.00100000000001000000
.....................................................................................................................................................................................................CTTCAGTTTCATTGCCTTTCT......................................................2111.00100000000000001000
...................................................................................................................................................TAGAGAAATTGATGTTGTCT.........................................................................................................2011.00100000000001000000
................................................................................................................................................AGGTAGAGAAATTGATGTTGTCATA.......................................................................................................2511.00100000000000001000
...................................................................................................................................................TAGAGAAATTGATGTTGT...........................................................................................................1811.00100000000001000000
.............................................................................................................................................ATAAGGTAGAGAAATTGAA................................................................................................................1911.00100000000000001000
............................................................................................................................................TATAAGGTAGAGAAATTGATGT..............................................................................................................2211.00100000000001000000
.......................................................................................................................................................GAAATTGATGTTGTC..........................................................................................................1520.50100000000001000000
.............................................................................................................................................ATAAGGTAGAGAAATA...................................................................................................................1660.17100000000001000000
droSec2
-----------------------------------------------------------------------------------------------------------------------------TGGGGC-ATTCAGGCTATAAGGTAGAGAAATTGATGTTGTCTACAC------------TA--T----TCAGACTTCAGTTTCATTGCCTTTCAATTTGTTTGCCCC-CATGCAACA-------------------------------SizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
.............................................................................................................................................ATAAGGTAGAGAAATTGATGTT.............................................................................................................221819.0081976491576
.............................................................................................................................................ATAAGGTAGAGAAATTGATGTTGT...........................................................................................................241764.007642697614
.............................................................................................................................................ATAAGGTAGAGAAATTGATGTTGTC..........................................................................................................251754.0075435422009
.............................................................................................................................................ATAAGGTAGAGAAATTGATGTTGTCT.........................................................................................................261486.0048603521304
.............................................................................................................................................ATAAGGTAGAGAAATTGATGTTG............................................................................................................231393.003934376103
.............................................................................................................................................ATAAGGTAGAGAAATTGATGT..............................................................................................................21128.002822240
..............................................................................................................................................TAAGGTAGAGAAATTGATGTTGTCT.........................................................................................................2519.0091620
.............................................................................................................................................ATAAGGTAGAGAAATTGATG...............................................................................................................2017.0070700
.............................................................................................................................................ATAAGGTAGAGAAATTGATGTTT............................................................................................................2316.0060600
.............................................................................................................................................ATAAGGTAGAGAAATTGATGTTGTT..........................................................................................................2516.0060510
..............................................................................................................................................TAAGGTAGAGAAATTGATGTTGTC..........................................................................................................2414.0040400
.............................................................................................................................................ATAAGGTAGAGAAATTGATGTTGTCTT........................................................................................................2714.0040220
..............................................................................................................................................TAAGGTAGAGAAATTGATGTTGT...........................................................................................................2314.0040310
..............................................................................................................................................TAAGGTAGAGAAATTGATGTTG............................................................................................................2213.0030300
.............................................................................................................................................ATAAGGTAGAGAAATTGATGTTGG...........................................................................................................2411.0010100
.............................................................................................................................................ATAAGGTAGAGAAATTGATGTTGTTCT........................................................................................................2711.0010001
..............................................................................................................................................TAAGGTAGAGAAATTGATGTT.............................................................................................................2111.0010010
.............................................................................................................................................ATAAGGTAGAGAAATTGA.................................................................................................................1811.0010010
.............................................................................................................................................ATAAGGTAGAGAAATTGATGTTGTA..........................................................................................................2511.0010100
.............................................................................................................................................ATAAGGTAGAGAAATTGATGTTGA...........................................................................................................2411.0010100
.............................................................................................................................................ATAAGGTAGAGAAATTGATGTTGTCTA........................................................................................................2711.0010100
.............................................................................................................................................ATAAGGTAGAGAAATTGATGTC.............................................................................................................2211.0010100
................................................................................................................................................AGGTAGAGAAATTGATGTT.............................................................................................................1911.0010100
droYak3
CT-------TCT----------------------------------TTGGCTTCGTTTTCTGGCGATCAAAAGAACTCG-----ACTCGACTCGAATC---C-AACCA----------ACTTC-ATGGGGC-ACACAAGCTATAAGGTAGAGAAATTGTTGTCTTCCACAC------------TA--T----TCAGACATCAGTTTAACTATCTTTCAATTTGTTTGCCCC-CACGCAACA-------------------------------SizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
.............................................................................................................................................ATAAGGTAGAGAAATTGTTGTC.............................................................................................................2211280.001280305123111611580000
.............................................................................................................................................ATAAGGTAGAGAAATTGTTGTCT............................................................................................................231633.00633131440026000000
.............................................................................................................................................ATAAGGTAGAGAAATTGTTGT..............................................................................................................211129.0012911810021070000
..............................................................................................................................................TAAGGTAGAGAAATTGTTGTCT............................................................................................................22145.0045020000430000
.............................................................................................................................................ATAAGGTAGAGAAATTGTTG...............................................................................................................20123.0023020001200000
.............................................................................................................................................ATAAGGTAGAGAAATTGTTGTCC............................................................................................................2315.00520100020000
.............................................................................................................................................ATAAGGTAGAGAAATTGTTGTCA............................................................................................................2314.00401000030000
..............................................................................................................................................TAAGGTAGAGAAATTGTTGTC.............................................................................................................2112.00202000000000
.............................................................................................................................................ATAAGGTAGAGAAATTGTTGTCTT...........................................................................................................2411.00100000010000
...................................................TTCGTTTTCTGGCGATCAAAA........................................................................................................................................................................................................2111.00100000010000
..............................................................................................................................................TAAGGTAGAGAAATTGTTGTCTA...........................................................................................................2311.00100000010000
.............................................................................................................................................ATAAGGTAGAGAAATTGT.................................................................................................................1811.00100001000000
............................................................................................................................................TATAAGGTAGAGAAATTGTTGTCT............................................................................................................2411.00100000010000
...............................................................................................................................................AAGGTAGAGAAATTGTTGTC.............................................................................................................2011.00100100000000
.............................................................................................................................................ATAAGGTAGAGAAATTGTTGTT.............................................................................................................2211.00100100000000
................................................................................................................................................AGGTAGAGAAATTGTTGTC.............................................................................................................1911.00100000010000
.....................................................................................................................................................................................................CATCAGTTTAACTATCTTTCA......................................................2111.00101000000000
...............................................................................................................................................AAGGTAGAGAAATTGTTGTCT............................................................................................................2111.00100000010000
.............................................................................................................................................ATAAGGTAGAGAAATTGTT................................................................................................................1911.00100000010000
.............................................................................................................................................ATAAGGTAGAGAAATTGTTGTCG............................................................................................................2311.00110000000000
droEre2
AT-------TC-------------------------------------GGCTTCGTTTCCTGGCGATCAAAAGAACTCG-----ACTCGGCTCGAATC---C-CAGTA----------CCTCC-TTGGGGC-ACTCAAGCTATAAGGTAGAAAAATTGTTGTCTTCCACAC------------TA--T----TCGGACTGCAGTTTAACTATCTTTCAATTTGTTTGCCCC-CACGCAACA-------------------------------SizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.............................................................................................................................................ATAAGGTAGAAAAATTGTTGTC.............................................................................................................2217500.007500221135367007290
.............................................................................................................................................ATAAGGTAGAAAAATTGTTGT..............................................................................................................211605.006053110549510
.............................................................................................................................................ATAAGGTAGAAAAATTGTTGTCT............................................................................................................231300.003007040258310
.............................................................................................................................................ATAAGGTAGAAAAATTGTTG...............................................................................................................20182.008210107190
..............................................................................................................................................TAAGGTAGAAAAATTGTTGTCT............................................................................................................22168.006810006520
.............................................................................................................................................ATAAGGTAGAAAAATTGTTGTCA............................................................................................................23119.001900001810
..............................................................................................................................................TAAGGTAGAAAAATTGTTGTC.............................................................................................................2117.0071000510
...............................................................................................................................................AAGGTAGAAAAATTGTTGTC.............................................................................................................2016.0060000600
.............................................................................................................................................ATAAGGTAGAAAAATTGTC................................................................................................................1916.0060000600
...................................................TTCGTTTCCTGGCGATCAAAAG.......................................................................................................................................................................................................2215.0050000500
.............................................................................................................................................ATAAGGTAGAAAAATTGTTGTT.............................................................................................................2214.0040000400
.............................................................................................................................................ATAAGGTAGAAAAATTGTTGTA.............................................................................................................2213.0030000120
...................................................TTCGTTTCCTGGCGATCAAA.........................................................................................................................................................................................................2013.0031000200
...................................................TTCGTTTCCTGGCGATCAAAAGT......................................................................................................................................................................................................2313.0030000300
.............................................................................................................................................ATAAGGTAGAAAAATTGTTGTCC............................................................................................................2313.0030000300
...................................................TTCGTTTCCTGGCGATCAA..........................................................................................................................................................................................................1911.0010000100
..............................................................................................................................................TAAGGTAGAAAAATTGTTGTCTT...........................................................................................................2311.0010000010
.....................................................................................................................................................................................................CTGCAGTTTAACTATCTTTCA......................................................2111.0010000100
.............................................................................................................................................ATAAGGTAGAAAAATTGTTGC..............................................................................................................2111.0010000100
..............................................................................................................................................TAAGGTAGAAAAATTGTTGT..............................................................................................................2011.0010000100
.............................................................................................................................................ATAAGGTAGAAAAATTGTTGTCTC...........................................................................................................2411.0010000100
.............................................................................................................................................ATAAGGTAGAAAAATTGTTGTGA............................................................................................................2311.0010000100
...................................................TTCGTTTCCTGGCGATCAAAA........................................................................................................................................................................................................2111.0010000010
..............................................................................................................................................TAAGGTAGAAAAATTGTTGTCTTC..........................................................................................................2411.0010000100
.............................................................................................................................................ATAAGGTAGAAAAATTGTTT...............................................................................................................2011.0010000100
..............................................................................................................................................TAAGGTAGAAAAATTGTTGTCA............................................................................................................2211.0011000000

Generated: 10/20/2015 at 07:37 PM