dmo_1473

Name	Class	Family	Strand
(CTG)n	Simple_repeat	Simple_repeat	+

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## AGCAATAACTGAATTTGTGAGAGCGACAGCAGCAACGGCAACTGTAACCGCAACAACTGAGAGAGCTGAAGCAAGCCACAAGAGCAGCAAGAGCAACAGCAGCAGCAACAGCAGCAGCAGCAGCACTTGTTAAGTGTGGTAGGTGCGAGGCAAAGTAAAGAGCAACGCCTTCACATTGGATTACGCGCAGTTTTACTTTAGACCGGAGCCAATTAGTGGCCAACAGCAACAACAGCAACTACAGCAGCAAC ****************************************************************************************..((((..((.((.((..........)).)).))..)))).**********************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M060 embryo	V056 head	V049 head	M046 female body	V110 male body	V041 embryo
................................................................GCTGAAGCAACCCACAAGAGCAGCAAGA...............................................................................................................................................................	28	1	1	1.00	1	1	0	0	0	0	0
.............TTTGTGAGAGTGACAGCGGCGA........................................................................................................................................................................................................................	22	3	2	0.50	1	0	1	0	0	0	0
.................................................................................................................GCAGCAGCAGCACTTGTT........................................................................................................................	18	0	3	0.33	1	0	0	0	1	0	0
.............CTTGTGAGCGCGACAGCAGCAC........................................................................................................................................................................................................................	22	3	4	0.25	1	0	0	1	0	0	0
.............TTTGTGCGTGCGACAGCAGCTA........................................................................................................................................................................................................................	22	3	5	0.20	1	0	0	1	0	0	0
.........................................................................................................CAACAGCAGCAGCAGCAGCACT............................................................................................................................	22	0	7	0.14	1	0	0	1	0	0	0
..............TTGTGCGTGCGACAGCAGCTAC.......................................................................................................................................................................................................................	22	3	8	0.13	1	0	0	1	0	0	0
.....................................................................................................................................................................................................................................CAACAGCCACTACAGCAGCAA.	21	1	8	0.13	1	0	0	0	1	0	0
.............CTTGTGCGAGCGACAGCGGCA.........................................................................................................................................................................................................................	21	3	9	0.11	1	0	1	0	0	0	0
.............ATTGTGCGAGCGACAGCCGC..........................................................................................................................................................................................................................	20	3	15	0.07	1	0	1	0	0	0	0
...................................................................GAAGCCAGCCTCAAGAGC......................................................................................................................................................................	18	2	16	0.06	1	0	0	0	0	1	0
..............TTGTGCGAGCGACTGCTGCAA........................................................................................................................................................................................................................	21	3	16	0.06	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................AACAGCTACTACAGCAGCA..	19	1	18	0.06	1	0	0	0	1	0	0
............................................................................................GCAACAGCAGCAGCAACAGCAGCAGCA....................................................................................................................................	27	0	20	0.05	1	0	0	0	1	0	0
.............CTTGGGAGAGAGACAGCAGC..........................................................................................................................................................................................................................	20	3	20	0.05	1	0	1	0	0	0	0
.....................................................................................................................................GTAGGATAGGTGCGAGGC....................................................................................................	18	3	20	0.05	1	0	0	0	1	0	0
................................................................................................CAGCAGCAGCAACAGCAGC........................................................................................................................................	19	0	20	0.05	1	1	0	0	0	0	0
..........................................................................................GAGCAACAGCAGCAGCAAC..............................................................................................................................................	19	0	20	0.05	1	0	0	0	0	0	1

TCGTTATTGACTTAAACACTCTCGCTGTCGTCGTTGCCGTTGACATTGGCGTTGTTGACTCTCTCGACTTCGTTCGGTGTTCTCGTCGTTCTCGTTGTCGTCGTCGTTGTCGTCGTCGTCGTCGTGAACAATTCACACCATCCACGCTCCGTTTCATTTCTCGTTGCGGAAGTGTAACCTAATGCGCGTCAAAATGAAATCTGGCCTCGGTTAATCACCGGTTGTCGTTGTTGTCGTTGATGTCGTCGTTG **********************************************************************************************************************..((((..((.((.((..........)).)).))..)))).****************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	V110 male body
......................................................................................................................TCGTCATGTACAATTCACA..................................................................................................................	19	2	2	1.00	2	2	0
.....................................................................................................................................................................................................................................GTTGTCGATGATGTCGTCGTT.	21	1	6	0.17	1	0	1
..........................................ACATTGGCGTAGTCAACTCT.............................................................................................................................................................................................	20	3	6	0.17	1	1	0

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6500:6287342-6287592 -	dmo_1473	AGCA--ATAACTGAATTTGTGAGA-GCGACAGC-----------------AGCAACGGCAAC---------------------------------TGTAACCGCAACAA---------C-TGA-----GA------------------------------------------------------------------------------GAGCTGAAGCA-----------------AGCCACAAGAGCAGCAAGAGCA------------------AC-------------AGCAGCA---G------CAACAGCAGC---------------------------------------------AGCAG------------------------------------------------------CAGCACTTGT------TAAGTGTGGTAGGTGCGAGGCAAA--G-TAAAGAGCAACGCCTTCACATTGGATT---ACGCGCAGTTTTACTTTAGACCGGAGCCAATT-AGTGGCCAACAGCA------------ACAACAGCAACTACAGCA--------------GCAAC
droVir3	scaffold_12723:3475105-3475346 +	dvi_1496	AGCA--ACAACTGCAATTGTAAGA-GTTACTGC-----------------AACCGC---------------------------------AGGCACAACAACAACAGCAAG--------------------------------------------------------------------------------------------AACAGC-------------AACAGCAACTGTAAA------------------AGCA------------------AC-------------AGCTGCA---G------CAACCGCAAC---------------------------------------------------------------------------------------------------------AACACT-------TGTT-AAGTGGTAGGCGCGAGGCTAA--G-TAAACAGCAACGCCTTCACATTGGATT---ACGCGCAGTTTTACTTTAGACCAGAGCCAATT-AGTGGCCAACAGCAACAACACCAACAGCAACAGCAACCACAGCA--------------GCAGC
droGri2	scaffold_14978:105402-105624 +		AGCA--GCAGCAGCA------------------------------------------------------------------------------------------GCATC--------------------------------------------------------------------AACAGCAACAACAACAACATCCGCAGCAGC-------------AGCAACCACAATACAA---GCAACGGCCAA----------------------------------------AGCAGCA---G------AAACCGCAA---------------------------------------------------------------------------------------------------------CAACACTT-------GTT-AAGTGGTAGACGCGAGGCAAACAG-TAAACAGCAACGCCTTCACATTGGATT---ACGCGCAGTTTTACTTTAGACCGGAGCCAATT-AGTGGCCAACAGCA------------ACAA--------------CAACAACGACAACAACAGC
droWil2	scf2_1100000003789:1944-2201 -		AGCA--ACAACAACAACTGCAGCT-GCAACAAT-----------------TGCAGC---------------------------------------AACAACAGCAACAGCAGCAACAAT-GGCAGCTGCAACAATTGCAGCA-------ACAACAGCAACAGCAGCAACAATGGCAGCAACAAC------------------AACAGC-------------AACAACAACTGCAGC------------------AGCA------------------AC-------------AATTGCA---G------CAACAACAGCAACAGCAGCAACAATGGCAGCAACAACAAC---------------------------------------------------------------------------------------------------------------------------A----------------------------GCAACAAC-AACTGCAGCAGCAACAATT-GCA-GC----------AACAACAGCAACAGCAGCAACAACAGCA--------------GCAAC
dp5	4_group5:164855-165062 -		AGCC--ACAGACACCGAGGCGAGAC--------CACTTGCAACGTGCCAC---------------------------------------AGACACAGCAGCAGGAGCAGAAGCAACAA-----------------------------------------------------------------------------------------------------------------------------------------GCA------------------CAAGAGAGTACGAATA---------T------TA---------------------------------------------------------------------------------------------------------------------ACTGGAAAGTGTGAGTGCGGTGGACGTGCGGCGGA--GTTGTAGAGGAACGCCTTCACATTGGATT---ACGCGCAGTTTTACCTTAGACCGGTGCCAATT-AGTGGCCAACAGCA------------GCAA--------------CAA----------------
droPer2	scaffold_5:4665786-4665993 -		AGCC--ACAGACACCGAGGCGAGAC--------CACTTGCAACGTGCCAC---------------------------------------AGACACAGCAGCAGGAGCAGAAGCAACAA-----------------------------------------------------------------------------------------------------------------------------------------GCA------------------CAAGAGAGTACGAGTA---------T------TA---------------------------------------------------------------------------------------------------------------------ACTGGAAAGTGTGAGTGCGGTGGACGTGCGGCGGA--GTTGTAGAGGAACGCCTTCACATTGGATT---ACGCGCAGTTTTACCTTAGACCGGTGCCAATT-AGTGGCCAACAGCA------------GCAA--------------CAA----------------
droAna3	scaffold_12943:1956585-1956792 -		AGGA--TCAGAC---------------------GTCTTGCAAC-TGCAAC---------------------------------------------TGCAACAGGAGCAAACA---------------------------------------------------------------------------------------------------------GA-----------------AGCCACAATA-----------------------------------------------------------------------------------------------------------------------------------------------GGCTAAAAGAGAGCGGGGG-AGGGAGACGGCGGAAG---------AGCCTGAATGTGGTAGACGCGCTTCGGA--GCTGTAGAGGAACGCCATCACATTGGATT---ACGCGCAGTTTTATCTTAGAGCGGTGCCAATT-AGTGGCCAACAGCA------------GCAA------CTACAGCA--------------GCA--
droBip1	scf7180000396728:1299211-1299419 +		AGGA--TCAGAC---------------------GACTTGCAAC-TGCAAC---------------------------------------------TGCAACAGGAGCAAAGA---------------------------------------------------------------------------------------------------------GA-----------------CGCCACAATA-----------------------------------------------------------------------------------------------------------------------------------------------GAACATAAAAGAGCGGGGAAAGGGAGACGGCGGAAG---------AGCCTGAATGTGGTAGACGCGCTTCGGA--GCTGTAGAGGAACGCCATCACATTGGATT---ACGCGCAGTTTTATCTTAGAGCGGTGCCAATT-AGTGGCCAACAGCA------------GCAA------CTACAGCA--------------GCA--
droKik1	scf7180000302382:646531-646757 +		AGGCGGACAGAC--AT-----------------CTCTTGCCACTTGCAAC---------------------------------------------TGCAACAGGAGCAGAAG---------------------------------------------------------------------------------------------------------GA-----------------AGCCACAAAGGCCACAGAAGCA------------------TA-------------AGCAGC------------------------------------------------------------------AGCCGGGCTGAGC-------ACA-----------------------------------------ATTGCCAAGCGTGAAAGCAATAGAGGCGCGCCGGA--GTTGTAGAGCAACGCCTTCACATTGGATT---ACGCGCAGTTTTACTTTAGAGCGGTGCCAATT-AGTGGCCAACAGCA------------GCAA--------------CAACAGCGCCAGCAGCA--
droFic1	scf7180000453924:1334081-1334327 -		AGCA--ACAACAACAGCAGCAACA-ACAACAGC-----------------AGCAGC------------------------------------------AACATCAGCAGCAGCAACAAC-AGC-----CGGCAATTATAAAT-------TCAACAG---------------------------------------------------C-------------AACAGCAACAGCAAA---------AGCAACAACGACGACGGCAGCTCCGTTGGTAAT-------------AAACTCGACGGGATCGTCAACAGCAGCAGC---------AGCGGCAGCCGCAGCAGC---------------------------------------------------------------------------------------------------------------------------A--------------------GG--AGCAGCTGAACA-AGTTGTAGAGGAGTCATTA-----AA----------AGTAGCAGCAACAACAGCAACAACAGCA--------------GCAAC
droEle1	scf7180000491338:912801-913057 -		AGGC--TCAGAC---------------------GTCTTGCCACTTTCAAC---------------------------------------------TGCAACAGGAGCAGAAGCCACAAA-GGA-----CACAAAGGACAAAA-------GC----------------------------------------------------------------------AA-------------------------------------------------------------------TAGCAACA---G------CAACAGCAATAGC------------------AACAGCAACAGCAACAACAGCAACTACAGGC---AGCGACGCGAACAAAAG-----------------------------------------CCAAGCGTGATTGTGGTAGACGCGCGTCGGA--GTTGTAGAGCAACGCCTTCACATTGGATT---ACGCGCAGTTTTACTTTAGAGCGGTGCCAATT-AGTGGCCAACAGCA------------GCAA--------------CAACA--------------
droRho1	scf7180000767569:1047-1267 +		AGGC--TCAGAC---------------------GTCTTGCCACTTGCAAC---------------------------------------------TGCAACAGGAGCAAAAGCCACAAA-GGA-----CACAAAGGACAAAA-------GC----------------------------------------------------------------------AA-------------------------------------------------------------------CA---------G------CAACAGCAAC---------------------------------------------TGCAGGG---AGTGACGCGAACAAAAG-----------------------------------------CCAAGCGTGAATGTGGTAGACGCGCGTCGGA--GTTGTAGAGGAACGCCTTCACATTGGATT---ACGCGCAGTTTTACTTTAGAGCGGTGCCAATT-AGTGGCCAACAGCA------------GCAA--------------CA-----------------
droBia1	scf7180000298389:1471463-1471669 -		AGCA--ACCACAACAGCGGCAACA-CCAGCAGC-----------------AGCAAC------------------------------------------AGCAGAAACAACAGCAACATC-AGC-----CA------------------------------------------------------------------------------CAGCAGCAGCAAT---------------AGCAACAAAAGCAACAAAAGCA------------------AC-------------AACAGCA---G------CAACAGCAGC---------AACAACAGCAGCAACAGCACC---------------------------------------------------------------------------------------------------------------------------AG----------------CAAC---AACAGCAACTAC-------ACCAGCGACAAC--AGCAAC----------TACACCAGCAACAACAGCAACTACACCA--------------GCAAC
droTak1	scf7180000415287:284154-284373 -		AGGC--TCAGAC---------------------GTCTTGCCACTTGCAAC---------------------------------------------TGCAACAGGAGCAAAAGCCACAAA-GGA-----CACAAAGA-----------CAA---------------CATC---------AAA---------------------AGCAAC-------------AA-------------------------------------------------------------------CA---------A------CAACAGCAACAGC------------------------------------------AGCGGGG---A---------------G-----------------------------------------CCAAGCGTGAATGTGGTAGACGCGATTCAGA--GCTGTAGAGGAACGCCATCACATTGGATT---ACGCGCAGTTTTACTTTAGAGCGGTGCCAATT-AGTGGCCAACAGCA------------GCAA--------------CAACA--------------
droEug1	scf7180000409554:90509-90735 +		AGGC--ACAGAC---------------------GTCTTGCCACTTGCAAC---------------------------------------------TGCAACAGGAGCAAAAGCCATAAA-GGA-----CACAAAGGACACTG-------GC--------------------------------------------------------A-------------AA-------------------------------------------------------------------CA---------G------GAATAGCCAA---------------------------------------------AGAGGGG---AGCGACGCGGACAATAGACC---------------------------------------AAAGCGTGAATGTGGTAGACGCGCGTGGGA--GCTGTAGAGGAACGCCATCACATTGGATT---ACGCGCAGTTTTACTTTAGAGCGGTGCCAATT-AGTGGCCAACAGCA------------GCAA--------------CAACA--------------
dm3	chr2L:13310033-13310266 -		AGGT--TCAGAC---------------------GTCTTGCCACTTGCAAC---------------------------------------------TGCAACAGGAGCAAAAGCCACAAAAGGA-----CACAAAGGATAC-GGAAGACAG---------------------------------------------------------C-------------AG-------------------------------------------------------------------CA---------A------CAACTGCAAC---------------------------------------------AGCGGGG---AGCGACGCAAACTATAG-----------------------------------------CCAAGCGTGAATGCGGTAGACGCGCGTCGAA--GCTGTAGAGGAACGCCTTCACATTGGATT---ACGCGCAGTTTTACTTTAGAGCGGTGCCAATT-AGTGGCCAACAGCA------------GCAA--------------CAACA---------ACA--
droSim2	2l:12927862-12928092 -	dsi_16962	AGGC--TTAGAC---------------------GTCTTGCCACTTGCAAC---------------------------------------------TGCAACAGGAGCAAAAGCCACAAAAGGA-----CACAAAGGATAA-GGAAGACAG---------------------------------------------------------C-------------AG-------------------------------------------------------------------TA---------G------CAACTGCAAC---------------------------------------------AGCGGGG---AGCGACGCAAACTATAG-----------------------------------------CCAAACGTGAATGCGGTAGACGCGCGTCGAA--GCTGTAGAGGAACGCCTTCACATTGGATT---ACGCGCAGTTTTACTTTAGAGCGGTGCCAATT-AGTGGCCAACAGCA------------GCAA--------------CAACA--------------
droSec2	scaffold_2:6680638-6680886 -		AGCA--ACAACAAGTT-----------------GTAATGCATC-ATCAGCAGCATCAGGTGCAGCAAGTGCAGCAGGTTCACTATCAGCAGC---AGCAACAGGAGCCCCAGCAGCAGC------------------------------------------------------------------------------------------------------AGCAACAACTGCACA------------------TGGA------------------GC-------------AACAGCA---G------CAGCAGCAGC---------AATATGTGCAGCAT-----------------------------------------------------------------------------------------------------------------------CA--GCCGCAGCAACCCGCCATC----CAGCATA--CGCAGCAGATTTACTACACTTCCGAGCAAGTCCTGCAACCAAATGCC----------ATAGTGCAGCATATGCAGCA--------------GCAGA
droYak3	2L:2082025-2082254 -		AGCA--GCAGCAGCAGCAGTGGCA-GCAACATC-----------------AGTGGCAGCAACAGCAAC---------------------------TGCAGCAGCAGCAACAGCAGCAG---------------------------------------------------------------------------------------------------CA-----------------A-CAACAGCAGCAGCAACAGCA------------------GC-------------AACAGCA---G------CAACAGCAGCAGC---------AGCAGCAGCAACAGCAGC-------------------------AGCAA---CAACA-----------------------------------------------------------------------------------AGGGCAGCGGC---------GACG-ACGCGCGCAGTTAT-TATAATAATGGCGTTAGTT-GTTAGCATAATGCA------------GCAGCAGCAA--------CAACA------ATCGCTAC
droEre2	scaffold_4929:12130189-12130410 +		AGGC--TCAGAC---------------------GACTTGCCACTTGCAAC---------------------------------------------TGCAGCAGGAGCACAAGCCACAAAGGGA-----CACAAAGGACACAAGAAGAC-----------------------------------------------------------------------------------------------------------------------------------------------AGCAACA---G------CAACAGCAACTGC------------------AA---------------------------------------------------------------------------------CTGCAACTGCCAAGCGTGAATGCGGTAGACGCGCGTCGAA--GCTGTAGAGGAACGCCTTCACATTGGATT---ACGCGCAGTTTTACTTTAGAGCGGTGCCAATT-AGTGGCCAACAGCA------------GCAA--------------CAACA--------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

AGCA--ATAACTGAATTTGTGAGA-GCGACAGC-----------------AGCAACGGCAAC---------------------------------TGTAACCGCAACAA---------C-TGA-----GA------------------------------------------------------------------------------GAGCTGAAGCA-----------------AGCCACAAGAGCAGCAAGAGCA------------------AC-------------AGCAGCA---G------CAACAGCAGC---------------------------------------------AGCAG------------------------------------------------------CAGCACTTGT------TAAGTGTGGTAGGTGCGAGGCAAA--G-TAAAGAGCAACGCCTTCACATTGGATT---ACGCGCAGTTTTACTTTAGACCGGAGCCAATT-AGTGGCCAACAGCA------------ACAACAGCAACTACAGCA--------------GCAAC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
............................................................................................................................................................................................................................................................................................................................GC---------------------------------------------AGCAG------------------------------------------------------CAGCACTTGT------T.........................................................................................................................................................	18	3	0.33	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................CAACAGCAGC---------------------------------------------AGCAG------------------------------------------------------CAGCACT...................................................................................................................................................................	22	7	0.14	1	0	0	1	0	0	0
...............................................................................................................................................................................................................................................................GCA------------------AC-------------AGCAGCA---G------CAACAGCAGC---------------------------------------------AGCA.................................................................................................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................C-------------AGCAGCA---G------CAACAGCAGC---------------------------------------------.....................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................GAGCA------------------AC-------------AGCAGCA---G------CAAC........................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0

droVir3

AGCA--ACAACTGCAATTGTAAGA-GTTACTGC-----------------AACCGC---------------------------------AGGCACAACAACAACAGCAAG--------------------------------------------------------------------------------------------AACAGC-------------AACAGCAACTGTAAA------------------AGCA------------------AC-------------AGCTGCA---G------CAACCGCAAC---------------------------------------------------------------------------------------------------------AACACT-------TGTT-AAGTGGTAGGCGCGAGGCTAA--G-TAAACAGCAACGCCTTCACATTGGATT---ACGCGCAGTTTTACTTTAGACCAGAGCCAATT-AGTGGCCAACAGCAACAACACCAACAGCAACAGCAACCACAGCA--------------GCAGC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................ACACT-------TGTT-AAGTGGTAGGCG...........................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTACTTTAGACCAGAGC.....................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAACCACAGCA--------------GCAGC	20	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACACCAACAGCAACAGCA............................	23	8	0.13	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCAACAGCAACAGCAAC..........................	20	17	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACACCAACAGCAACAGCA............................	20	19	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

AGCA--GCAGCAGCA------------------------------------------------------------------------------------------GCATC--------------------------------------------------------------------AACAGCAACAACAACAACATCCGCAGCAGC-------------AGCAACCACAATACAA---GCAACGGCCAA----------------------------------------AGCAGCA---G------AAACCGCAA---------------------------------------------------------------------------------------------------------CAACACTT-------GTT-AAGTGGTAGACGCGAGGCAAACAG-TAAACAGCAACGCCTTCACATTGGATT---ACGCGCAGTTTTACTTTAGACCGGAGCCAATT-AGTGGCCAACAGCA------------ACAA--------------CAACAACGACAACAACAGC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCA------------ACAA--------------CAACAACGACAAC......	23	15	0.07	1	1	0
......GCAGCAGCA------------------------------------------------------------------------------------------GCATC--------------------------------------------------------------------AACAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0

droWil2

AGCA--ACAACAACAACTGCAGCT-GCAACAAT-----------------TGCAGC---------------------------------------AACAACAGCAACAGCAGCAACAAT-GGCAGCTGCAACAATTGCAGCA-------ACAACAGCAACAGCAGCAACAATGGCAGCAACAAC------------------AACAGC-------------AACAACAACTGCAGC------------------AGCA------------------AC-------------AATTGCA---G------CAACAACAGCAACAGCAGCAACAATGGCAGCAACAACAAC---------------------------------------------------------------------------------------------------------------------------A----------------------------GCAACAAC-AACTGCAGCAGCAACAATT-GCA-GC----------AACAACAGCAACAGCAGCAACAACAGCA--------------GCAAC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.......................................................................................................................................................................................................................................................................................................................................AACAATGGCAGCAACAACAAC---------------------------------------------------------------------------------------------------------------------------A----------------------------G...........................................................................................	23	20	0.70	14	0	14	0	0	0
......................................................................................................................................................................AACAATGGCAGCAACAAC------------------AACAG.................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.70	14	0	14	0	0	0
.....................................................................................................................................................................................................................................................................................................................AACAACAGCAACAGCAGCAACAATGG.................................................................................................................................................................................................................................................................	26	20	0.35	7	0	7	0	0	0
.............................................................................................................................................A-------ACAACAGCAACAGCAGCAACAATGG..................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.35	7	0	7	0	0	0
...............................................................................................AACAACAGCAACAGCAGCAACAAT-GG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.35	7	0	7	0	0	0
..................................................................................................................................................................................AACAAC------------------AACAGC-------------AACAACAACTG........................................................................................................................................................................................................................................................................................................................................................................	23	20	0.20	4	0	4	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAATT-GCA-GC----------AACAACAG.......................................	20	20	0.15	3	0	3	0	0	0
.................................................................................................................................................................................................................................................................A------------------AC-------------AATTGCA---G------CAACAACAG...................................................................................................................................................................................................................................................................................	20	20	0.15	3	0	3	0	0	0
...........................AACAAT-----------------TGCAGC---------------------------------------AACAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.15	3	0	3	0	0	0
.................................................................................................................................AACAATTGCAGCA-------ACAACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.15	3	0	3	0	0	0
.....................................................................................................................................................................................................................................................................................................................AACAACAGCAACAGCAGCAACAA....................................................................................................................................................................................................................................................................	23	20	0.10	2	0	2	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCAACAGCAGCAACAA........................	23	20	0.10	2	0	2	0	0	0
...............................................................................................AACAACAGCAACAGCAGCAACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	2	0	0	0
.....................................................AGC---------------------------------------AACAACAGCAACAGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	2	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC-AACTGCAGCAGCAACAATT-GC.............................................................	25	20	0.10	2	0	2	0	0	0
.................................................................................................................................................................................................................................................................A------------------AC-------------AATTGCA---G------CAACAACAGCA.................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	2	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAATT-GCA-GC----------AACAACAGCA.....................................	22	20	0.10	2	0	0	0	2	0
..........................................................................................................................................AGCA-------ACAACAGCAACAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	2	0	0	0
.......................................................................................................................................TGCAGCA-------ACAACAGCAACAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	2	0	0	0
.........................................................................................................................................................................................................................................................................................................A---G------CAACAACAGCAACAGCAG..........................................................................................................................................................................................................................................................................	20	20	0.10	2	0	2	0	0	0
...............................................................................................................................................................................................................................CAACAACTGCAGC------------------AGCA------------------AC-------------AATTGC.......................................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	2	0	0	0
.......................................................................................................................................................................................................................................................................................................................................AACAATGGCAGCAACAACAAC---------------------------------------------------------------------------------------------------------------------------A----------------------------GC..........................................................................................	24	20	0.10	2	0	2	0	0	0
......................................................................................................................................................................................................................................................................................................TGCA---G------CAACAACAGCAACAGCAG..........................................................................................................................................................................................................................................................................	23	20	0.10	2	0	2	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-GC----------AACAACAGCAACAGCAG..............................	20	20	0.10	2	0	2	0	0	0
.............................................................................................................................................A-------ACAACAGCAACAGCAGCAACAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	2	0	0	0
..................................................TGCAGC---------------------------------------AACAACAGCAACAGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	2	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-GCA-GC----------AACAACAGCAACAGCAG..............................	23	20	0.10	2	0	2	0	0	0
......................................................................................................................................................................AACAATGGCAGCAACAAC------------------AACAGC-------------...................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	2	0	0	0
............................................................................................................................................................................................................................................................................................................................................TGGCAGCAACAACAAC---------------------------------------------------------------------------------------------------------------------------A----------------------------GCAACAA.....................................................................................	24	20	0.05	1	0	0	0	1	0
...........................................................................................................................................................................................................ACAGC-------------AACAACAACTGCAGC------------------A.................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................AGCAACAGCAGCAACAATGGCAG..............................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................TGCA---G------CAACAACAGCAACAGCAGC.........................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
......................................................................................................................................TTGCAGCA-------ACAACAGCAACAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
.......................................................................................................................................TGCAGCA-------ACAACAGCAACAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
............................................................................................................................................CA-------ACAACAGCAACAGCAGCAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0
...........................AACAAT-----------------TGCAGC---------------------------------------AACAACAGCAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
......................................................................................................................................................CAACAGCAACAGCAGCAACAATGG..................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
...............................................................................................................................................................................................................................CAACAACTGCAGC------------------AGCA------------------AC-------------AATTGCA---G------C...........................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0
..................................................................................................................................................................................AACAAC------------------AACAGC-------------AACAACAACTGCAGC------------------..................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0
.......................................................................................................................................TGCAGCA-------ACAACAGCAACAGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................AACAACAAC---------------------------------------------------------------------------------------------------------------------------A----------------------------GCAACAAC-AACTGC.............................................................................	24	20	0.05	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................TGCA---G------CAACAACAGCAACAGCA...........................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................TTGCA---G------CAACAACAGCAACAGCAG..........................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
...........................AACAAT-----------------TGCAGC---------------------------------------AACAACAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC-AACTGCAGCAGCAACAATT-G..............................................................	23	20	0.05	1	0	1	0	0	0
.................................................................................................................................AACAATTGCAGCA-------ACAACAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
...........................................................................................................................................................................TGGCAGCAACAAC------------------AACAGC-------------AACAACAAC..........................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-GCA-GC----------AACAACAGCAACAGCA...............................	22	20	0.05	1	0	1	0	0	0
..................................................TGCAGC---------------------------------------AACAACAGCAACAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
.................................................................................................................................AACAATTGCAGCA-------ACAACAGCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC-AACTGCAGCAGCAACAATT-...............................................................	22	20	0.05	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-GCA-GC----------AACAACAGCAACAGCAG..............................	24	20	0.05	1	0	0	0	1	0
.........................................................................................................................................................................AATGGCAGCAACAAC------------------AACAGC-------------A..................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
.............................................................................................................................................................................................................................AACAACAACTGCAGC------------------AGCA------------------AC-------------.............................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAATT-GCA-GC----------AACAACAGCAAC...................................	24	20	0.05	1	0	1	0	0	0
.....................................................................................................................................................................................AAC------------------AACAGC-------------AACAACAACTGCAG.....................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................A------------------AC-------------AATTGCA---G------CAACAACAGCAAC...............................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................TGGCAGCAACAACAAC---------------------------------------------------------------------------------------------------------------------------A----------------------------GCAACAAC-AAC................................................................................	28	20	0.05	1	0	1	0	0	0
...............................................................................................................................................................CAGCAGCAACAATGGCAGCAA............................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................CAACAATGGCAGCAACAACAAC---------------------------------------------------------------------------------------------------------------------------A----------------------------G...........................................................................................	24	20	0.05	1	0	1	0	0	0
....................................................................................................................................AATTGCAGCA-------ACAACAGCAACAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
...............................................................................................................................................................................AGCAACAAC------------------AACAGC-------------AACAACAACTGCAG.....................................................................................................................................................................................................................................................................................................................................................................	29	20	0.05	1	0	1	0	0	0
................................T-----------------TGCAGC---------------------------------------AACAACAGCAACAGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
.....................................................................................................AGCAACAGCAGCAACAAT-GGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................AGCAACAATGGCAGCAACAACAAC---------------------------------------------------------------------------------------------------------------------------A----------------------------............................................................................................	25	20	0.05	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................TTGCA---G------CAACAACAGCAACAGCAGC.........................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
...........................................................................................................................................................................TGGCAGCAACAAC------------------AACAGC-------------AACAACAA...........................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	1	0
..........................................................................................................................................................AGCAACAGCAGCAACAATGGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
...........................................................................................................................................................................TGGCAGCAACAAC------------------AACAGC-------------AACAA..............................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
.................................................................................................................................AACAATTGCAGCA-------ACAACAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................ACAATGGCAGCAACAACAAC---------------------------------------------------------------------------------------------------------------------------A----------------------------G...........................................................................................	22	20	0.05	1	0	1	0	0	0
....................................................................................................................................................................................CAAC------------------AACAGC-------------AACAACAACTGCAGC------------------..................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
...........................AACAAT-----------------TGCAGC---------------------------------------AACAACAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAATT-GCA-GC----------AACAACAGCAA....................................	23	20	0.05	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................AAC---------------------------------------------------------------------------------------------------------------------------A----------------------------GCAACAAC-AACTGCAGCAGC.......................................................................	24	20	0.05	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................AATGGCAGCAACAACAAC---------------------------------------------------------------------------------------------------------------------------A----------------------------GC..........................................................................................	21	20	0.05	1	0	1	0	0	0
.........................................................................................................................................................................AATGGCAGCAACAAC------------------AACAGC-------------AACA...............................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
...........................AACAAT-----------------TGCAGC---------------------------------------AACAACAGCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................AGCAACAATGGCAGCAACAAC------------------AACA..................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................CAGCAGCAACAATGGCAGCAA...........................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0
..................................................................................................................................................................................AACAAC------------------AACAGC-------------AACAACAACTGC.......................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................AACAACAAC---------------------------------------------------------------------------------------------------------------------------A----------------------------GCAACAAC-AACT...............................................................................	22	20	0.05	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................GGCAGCAACAACAAC---------------------------------------------------------------------------------------------------------------------------A----------------------------GCAACAA.....................................................................................	23	20	0.05	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................A------------------AC-------------AATTGCA---G------CAACAACAGCAA................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................AGCAGCAACAATGGCAGCAACAACA......................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................CAACAACAGCAACAGCAGCAAC......................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0
..............................AAT-----------------TGCAGC---------------------------------------AACAACAGCAACAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................TGGCAGCAACAACAAC---------------------------------------------------------------------------------------------------------------------------A----------------------------GCAACAAC-AA.................................................................................	27	20	0.05	1	0	0	0	1	0
..........................................................................................................................................................................................................AACAGC-------------AACAACAACTGCAGC------------------AGC...............................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
................................................................................................................................................................................................................................................................CA------------------AC-------------AATTGCA---G------CAACAACAGCAA................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................GGCAGCAACAACAAC---------------------------------------------------------------------------------------------------------------------------A----------------------------GCAAC.......................................................................................	21	20	0.05	1	0	1	0	0	0
.....................................................................................................................................................................CAACAATGGCAGCAACAAC------------------AACAG.................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
.......................................................C---------------------------------------AACAACAGCAACAGCAGCAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................AC---------------------------------------------------------------------------------------------------------------------------A----------------------------GCAACAAC-AACTGCAGCA.........................................................................	21	20	0.05	1	0	1	0	0	0
.................................................................................................................................AACAATTGCAGCA-------ACAACAGCAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
............................................................................................................................................................................GGCAGCAACAAC------------------AACAGC-------------AAC................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-GCA-GC----------AACAACAGCAACAGCAGC.............................	25	20	0.05	1	0	1	0	0	0
................................T-----------------TGCAGC---------------------------------------AACAACAGCAACAGCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................AACAACAAC---------------------------------------------------------------------------------------------------------------------------A----------------------------GCAACAAC-AACTGCAGC..........................................................................	27	20	0.05	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAATT-GCA-GC----------AACAACAGC......................................	21	20	0.05	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC-AACTGCAGCAGCAACAATT-GCA-GC----------...............................................	28	20	0.05	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................AATGGCAGCAACAACAAC---------------------------------------------------------------------------------------------------------------------------A----------------------------GCAACAAC-...................................................................................	27	20	0.05	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................CAACAGCAACAGCAGCAACAATGG.................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAACAACAGC....................	19	20	0.05	1	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAATT-GCA-GC----------AACAACAGCAA....................................	24	20	0.05	1	0	0	0	1	0
..........................CAACAAT-----------------TGCAGC---------------------------------------AACAACAGCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................A------------------AC-------------AATTGCA---G------CAACAACAGC..................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
................................................................................................................................................................................................................................AACAACTGCAGC------------------AGCA------------------AC-------------AATTG........................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
..................................................................................................................................................................................AACAAC------------------AACAGC-------------AACAACAACT.........................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATT-GCA-GC----------AACAACAGCAACAGC................................	24	20	0.05	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAC-AACTGCAGCAGCAAC....................................................................	21	20	0.05	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................AACAAC---------------------------------------------------------------------------------------------------------------------------A----------------------------GCAACAAC-AACTGCAG...........................................................................	23	20	0.05	1	0	1	0	0	0
................................................................................................................................................................................................................................AACAACTGCAGC------------------AGCA------------------AC-------------AATT.........................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
................................................................................................................................................................AGCAGCAACAATGGCAGCAACAAC------------------A.....................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
.................................................................................................CAACAGCAACAGCAGCAACAAT-GG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
......................................................................................................................................TTGCAGCA-------ACAACAGCAACAGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------------------------GCAACAAC-AACTGCAGCAGCAACA...................................................................	25	20	0.05	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................AATGGCAGCAACAACAAC---------------------------------------------------------------------------------------------------------------------------A----------------------------GCAACA......................................................................................	25	20	0.05	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................ACAATGGCAGCAACAACAAC---------------------------------------------------------------------------------------------------------------------------A----------------------------GCA.........................................................................................	24	20	0.05	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................CAAC---------------------------------------------------------------------------------------------------------------------------A----------------------------GCAACAAC-AACTGCAG...........................................................................	21	20	0.05	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C----------AACAACAGCAACAGCAGCAAC..........................	22	20	0.05	1	0	0	0	1	0
.........................................................................................................................................................................AATGGCAGCAACAAC------------------AACAGC-------------AACAAC.............................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0
.........................................................................................................................................................................AATGGCAGCAACAAC------------------AACAGC-------------...................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................CAACAAC---------------------------------------------------------------------------------------------------------------------------A----------------------------GCAACAAC-AACTGCAGC..........................................................................	25	20	0.05	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................AGCAACAACAAC---------------------------------------------------------------------------------------------------------------------------A----------------------------GCAACAAC-AACTGCAG...........................................................................	29	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................AATTGCA---G------CAACAACAGCAACAGC............................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
................................................................................................................................CAACAATTGCAGCA-------ACAACAGCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-GCA-GC----------AACAACAGCAACAGCAGC.............................	24	20	0.05	1	0	1	0	0	0
..................................................TGCAGC---------------------------------------AACAACAGCAACAGCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................AATGGCAGCAACAACAAC---------------------------------------------------------------------------------------------------------------------------A----------------------------GCA.........................................................................................	22	20	0.05	1	0	1	0	0	0

dp5

AGCC--ACAGACACCGAGGCGAGAC--------CACTTGCAACGTGCCAC---------------------------------------AGACACAGCAGCAGGAGCAGAAGCAACAA-----------------------------------------------------------------------------------------------------------------------------------------GCA------------------CAAGAGAGTACGAATA---------T------TA---------------------------------------------------------------------------------------------------------------------ACTGGAAAGTGTGAGTGCGGTGGACGTGCGGCGGA--GTTGTAGAGGAACGCCTTCACATTGGATT---ACGCGCAGTTTTACCTTAGACCGGTGCCAATT-AGTGGCCAACAGCA------------GCAA--------------CAA----------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGGCGGA--GTTGTAGAGGAAC...................................................................................................................	23	1	4.00	4	0	0	0	0	0	0	0	0	0	4
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGGA--GTTGTAGAGGAAC...................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	2
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGGCGGA--GTTGTAGAGGAACGCC................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	1
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCGGA--GTTGTAGAGGAAC...................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGGCGGA--GTTGTAGAG.......................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	1
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGA--GTTGTAGAGGAAC...................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	1
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACGTGCGGCGGA--GTTGTAGA........................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	1

droPer2

AGCC--ACAGACACCGAGGCGAGAC--------CACTTGCAACGTGCCAC---------------------------------------AGACACAGCAGCAGGAGCAGAAGCAACAA-----------------------------------------------------------------------------------------------------------------------------------------GCA------------------CAAGAGAGTACGAGTA---------T------TA---------------------------------------------------------------------------------------------------------------------ACTGGAAAGTGTGAGTGCGGTGGACGTGCGGCGGA--GTTGTAGAGGAACGCCTTCACATTGGATT---ACGCGCAGTTTTACCTTAGACCGGTGCCAATT-AGTGGCCAACAGCA------------GCAA--------------CAA----------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droAna3

AGGA--TCAGAC---------------------GTCTTGCAAC-TGCAAC---------------------------------------------TGCAACAGGAGCAAACA---------------------------------------------------------------------------------------------------------GA-----------------AGCCACAATA-----------------------------------------------------------------------------------------------------------------------------------------------GGCTAAAAGAGAGCGGGGG-AGGGAGACGGCGGAAG---------AGCCTGAATGTGGTAGACGCGCTTCGGA--GCTGTAGAGGAACGCCATCACATTGGATT---ACGCGCAGTTTTATCTTAGAGCGGTGCCAATT-AGTGGCCAACAGCA------------GCAA------CTACAGCA--------------GCA--	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

AGGA--TCAGAC---------------------GACTTGCAAC-TGCAAC---------------------------------------------TGCAACAGGAGCAAAGA---------------------------------------------------------------------------------------------------------GA-----------------CGCCACAATA-----------------------------------------------------------------------------------------------------------------------------------------------GAACATAAAAGAGCGGGGAAAGGGAGACGGCGGAAG---------AGCCTGAATGTGGTAGACGCGCTTCGGA--GCTGTAGAGGAACGCCATCACATTGGATT---ACGCGCAGTTTTATCTTAGAGCGGTGCCAATT-AGTGGCCAACAGCA------------GCAA------CTACAGCA--------------GCA--	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AGGCGGACAGAC--AT-----------------CTCTTGCCACTTGCAAC---------------------------------------------TGCAACAGGAGCAGAAG---------------------------------------------------------------------------------------------------------GA-----------------AGCCACAAAGGCCACAGAAGCA------------------TA-------------AGCAGC------------------------------------------------------------------AGCCGGGCTGAGC-------ACA-----------------------------------------ATTGCCAAGCGTGAAAGCAATAGAGGCGCGCCGGA--GTTGTAGAGCAACGCCTTCACATTGGATT---ACGCGCAGTTTTACTTTAGAGCGGTGCCAATT-AGTGGCCAACAGCA------------GCAA--------------CAACAGCGCCAGCAGCA--	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AGCA--ACAACAACAGCAGCAACA-ACAACAGC-----------------AGCAGC------------------------------------------AACATCAGCAGCAGCAACAAC-AGC-----CGGCAATTATAAAT-------TCAACAG---------------------------------------------------C-------------AACAGCAACAGCAAA---------AGCAACAACGACGACGGCAGCTCCGTTGGTAAT-------------AAACTCGACGGGATCGTCAACAGCAGCAGC---------AGCGGCAGCCGCAGCAGC---------------------------------------------------------------------------------------------------------------------------A--------------------GG--AGCAGCTGAACA-AGTTGTAGAGGAGTCATTA-----AA----------AGTAGCAGCAACAACAGCAACAACAGCA--------------GCAAC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AGGC--TCAGAC---------------------GTCTTGCCACTTTCAAC---------------------------------------------TGCAACAGGAGCAGAAGCCACAAA-GGA-----CACAAAGGACAAAA-------GC----------------------------------------------------------------------AA-------------------------------------------------------------------TAGCAACA---G------CAACAGCAATAGC------------------AACAGCAACAGCAACAACAGCAACTACAGGC---AGCGACGCGAACAAAAG-----------------------------------------CCAAGCGTGATTGTGGTAGACGCGCGTCGGA--GTTGTAGAGCAACGCCTTCACATTGGATT---ACGCGCAGTTTTACTTTAGAGCGGTGCCAATT-AGTGGCCAACAGCA------------GCAA--------------CAACA--------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AGGC--TCAGAC---------------------GTCTTGCCACTTGCAAC---------------------------------------------TGCAACAGGAGCAAAAGCCACAAA-GGA-----CACAAAGGACAAAA-------GC----------------------------------------------------------------------AA-------------------------------------------------------------------CA---------G------CAACAGCAAC---------------------------------------------TGCAGGG---AGTGACGCGAACAAAAG-----------------------------------------CCAAGCGTGAATGTGGTAGACGCGCGTCGGA--GTTGTAGAGGAACGCCTTCACATTGGATT---ACGCGCAGTTTTACTTTAGAGCGGTGCCAATT-AGTGGCCAACAGCA------------GCAA--------------CA-----------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AGCA--ACCACAACAGCGGCAACA-CCAGCAGC-----------------AGCAAC------------------------------------------AGCAGAAACAACAGCAACATC-AGC-----CA------------------------------------------------------------------------------CAGCAGCAGCAAT---------------AGCAACAAAAGCAACAAAAGCA------------------AC-------------AACAGCA---G------CAACAGCAGC---------AACAACAGCAGCAACAGCACC---------------------------------------------------------------------------------------------------------------------------AG----------------CAAC---AACAGCAACTAC-------ACCAGCGACAAC--AGCAAC----------TACACCAGCAACAACAGCAACTACACCA--------------GCAAC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AGGC--TCAGAC---------------------GTCTTGCCACTTGCAAC---------------------------------------------TGCAACAGGAGCAAAAGCCACAAA-GGA-----CACAAAGA-----------CAA---------------CATC---------AAA---------------------AGCAAC-------------AA-------------------------------------------------------------------CA---------A------CAACAGCAACAGC------------------------------------------AGCGGGG---A---------------G-----------------------------------------CCAAGCGTGAATGTGGTAGACGCGATTCAGA--GCTGTAGAGGAACGCCATCACATTGGATT---ACGCGCAGTTTTACTTTAGAGCGGTGCCAATT-AGTGGCCAACAGCA------------GCAA--------------CAACA--------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

AGGC--ACAGAC---------------------GTCTTGCCACTTGCAAC---------------------------------------------TGCAACAGGAGCAAAAGCCATAAA-GGA-----CACAAAGGACACTG-------GC--------------------------------------------------------A-------------AA-------------------------------------------------------------------CA---------G------GAATAGCCAA---------------------------------------------AGAGGGG---AGCGACGCGGACAATAGACC---------------------------------------AAAGCGTGAATGTGGTAGACGCGCGTGGGA--GCTGTAGAGGAACGCCATCACATTGGATT---ACGCGCAGTTTTACTTTAGAGCGGTGCCAATT-AGTGGCCAACAGCA------------GCAA--------------CAACA--------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

AGGT--TCAGAC---------------------GTCTTGCCACTTGCAAC---------------------------------------------TGCAACAGGAGCAAAAGCCACAAAAGGA-----CACAAAGGATAC-GGAAGACAG---------------------------------------------------------C-------------AG-------------------------------------------------------------------CA---------A------CAACTGCAAC---------------------------------------------AGCGGGG---AGCGACGCAAACTATAG-----------------------------------------CCAAGCGTGAATGCGGTAGACGCGCGTCGAA--GCTGTAGAGGAACGCCTTCACATTGGATT---ACGCGCAGTTTTACTTTAGAGCGGTGCCAATT-AGTGGCCAACAGCA------------GCAA--------------CAACA---------ACA--	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
................................................................................................................................................................................................................................................................................................................................................................................GG---AGCGACGCAAACTATAG-----------------------------------------.................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................TGCAAC---------------------------------------------TGCAACAGGAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAATT-AGTGGCCAACAGCA------------GC...................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGGATT---ACGCGCAGTT......................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................GG---AGCGACGCAAACTATA...........................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCA------------GCAA--------------CAACA---------AC...	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

AGGC--TTAGAC---------------------GTCTTGCCACTTGCAAC---------------------------------------------TGCAACAGGAGCAAAAGCCACAAAAGGA-----CACAAAGGATAA-GGAAGACAG---------------------------------------------------------C-------------AG-------------------------------------------------------------------TA---------G------CAACTGCAAC---------------------------------------------AGCGGGG---AGCGACGCAAACTATAG-----------------------------------------CCAAACGTGAATGCGGTAGACGCGCGTCGAA--GCTGTAGAGGAACGCCTTCACATTGGATT---ACGCGCAGTTTTACTTTAGAGCGGTGCCAATT-AGTGGCCAACAGCA------------GCAA--------------CAACA--------------

Size

Hit Count

Total Norm

Total

M023
Head

M024
Male-body

M025
Embryo

M053
Female-body

O001
Testis

O002
Head

SRR553485
Ovary

SRR553486
Ovary

SRR553487
Ovary

SRR553488
Ovary

SRR618934
Ovary

V044
Embryo

SRR902008
Ovary

SRR902009
Testis

SRR1275487
Male larvae

SRR1275485
Male prepupae

SRR1275483
Male prepupae

No Reads

droSec2

AGCA--ACAACAAGTT-----------------GTAATGCATC-ATCAGCAGCATCAGGTGCAGCAAGTGCAGCAGGTTCACTATCAGCAGC---AGCAACAGGAGCCCCAGCAGCAGC------------------------------------------------------------------------------------------------------AGCAACAACTGCACA------------------TGGA------------------GC-------------AACAGCA---G------CAGCAGCAGC---------AATATGTGCAGCAT-----------------------------------------------------------------------------------------------------------------------CA--GCCGCAGCAACCCGCCATC----CAGCATA--CGCAGCAGATTTACTACACTTCCGAGCAAGTCCTGCAACCAAATGCC----------ATAGTGCAGCATATGCAGCA--------------GCAGA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..............................................................................TCACTATCAGCAGC---AGCAACAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACTACACTTCCGAGCAAGT.................................................................	22	1	1.00	1	0	1	0	0
.............................................................................................................CAGCAGCAGC------------------------------------------------------------------------------------------------------AGCAACAAC..........................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1

droYak3

AGCA--GCAGCAGCAGCAGTGGCA-GCAACATC-----------------AGTGGCAGCAACAGCAAC---------------------------TGCAGCAGCAGCAACAGCAGCAG---------------------------------------------------------------------------------------------------CA-----------------A-CAACAGCAGCAGCAACAGCA------------------GC-------------AACAGCA---G------CAACAGCAGCAGC---------AGCAGCAGCAACAGCAGC-------------------------AGCAA---CAACA-----------------------------------------------------------------------------------AGGGCAGCGGC---------GACG-ACGCGCGCAGTTAT-TATAATAATGGCGTTAGTT-GTTAGCATAATGCA------------GCAGCAGCAA--------CAACA------ATCGCTAC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.............................................................................................................................................................................................................................................................................................................................CAGC---------AGCAGCAGCAACAGCAGC-------------------------AGC........................................................................................................................................................................................................................	25	20	0.30	6	0	0	0	0	0	0	0	0	0	0	6
..................................................................................................................GCAG---------------------------------------------------------------------------------------------------CA-----------------A-CAACAGCAGCAGCAACAGCA------------------GC-------------.............................................................................................................................................................................................................................................................................................................	29	18	0.06	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................GCAG---------------------------------------------------------------------------------------------------CA-----------------A-CAACAGCAGCAGC.....................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................AACAGCAGCAG---------------------------------------------------------------------------------------------------CA-----------------A-CAACAGCAGCA.......................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................AG---------------------------------------------------------------------------------------------------CA-----------------A-CAACAGCAGCAGCAACAGC...............................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................AGCAG---------------------------------------------------------------------------------------------------CA-----------------A-CAACAGCAGCAGCAACAGC...............................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAGC-------------------------AGCAA---CA.................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................AACAGCAGCAG---------------------------------------------------------------------------------------------------CA-----------------A-CAACAGCAGC........................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................AGCAACAGCAGCAG---------------------------------------------------------------------------------------------------CA-----------------A-CA................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

AGGC--TCAGAC---------------------GACTTGCCACTTGCAAC---------------------------------------------TGCAGCAGGAGCACAAGCCACAAAGGGA-----CACAAAGGACACAAGAAGAC-----------------------------------------------------------------------------------------------------------------------------------------------AGCAACA---G------CAACAGCAACTGC------------------AA---------------------------------------------------------------------------------CTGCAACTGCCAAGCGTGAATGCGGTAGACGCGCGTCGAA--GCTGTAGAGGAACGCCTTCACATTGGATT---ACGCGCAGTTTTACTTTAGAGCGGTGCCAATT-AGTGGCCAACAGCA------------GCAA--------------CAACA--------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..............................................CAAC---------------------------------------------TGCAGCAGGAGCACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0
..................................................................................................AGCAGGAGCACAAGCCACAAAGGGA-----................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0

dmo_1473

scaffold_6500:6287392-6287542 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads