ID:

dmo_1466

 Coordinate:

scaffold_6500:5697074-5697306 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-66.1 -66.1 -66.0

Flybase annnotation

CDS [Dmoj\GI17179-cds]; CDS [Dmoj\GI17179-cds]; exon [dmoj_GLEANR_1983:2]; exon [dmoj_GLEANR_1983:1]; intron [Dmoj\GI17179-in]; Antisense to intron [Dmoj\GI14192-in]

Repeatable elements

NameClassFamilyStrand
(GA)nSimple_repeatSimple_repeat+
mature
  1. scaffold_6496:21334995-21335013 +
  2. dmo_1466  scaffold_6500:5697074-5697092 +
star

Sense Strand Reads

##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CGGCTATTTGCAACAGACGCTTAGCGCAGATCCAAATGTCCGTAGACCTGGTAAGTATGTGTGTGTGAGCATAAGAGAGAGAGAGAGAGAGAGAGAGAGAGCAACATCGAATTATTGTGCGCGCGGGAAAACGGCGGTACCTTAGCGGGCTCATCAAATCAACGGCAAAAAATGAGATTGTTGATTGAGTAGCTCTCTTTCTCTTTTAATCTCTTACGAACATATCTTGTGCGGTTGTGCAGATCTAGAATAAAACATGTTTTTATTTTTTTTCTATAAACAGCCGAAAAGTTGTTGGAATCAACAGAGTTGCAGCAGAATTATCCGGTTCTT
**************************************************...((.((.(((......((((((((..((((((..((((((((((((((((.((..........((.((.((((((...((....)).)))..))).)).))((((.(((((((............))))))))))))).))))))))))))))))..)))))).........))))))))......))).))))(((((((((.....)))))))))..............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V110
male body		 V056
head
 V049
head
 M060
embryo
 V041
embryo
.........................................................................................................................CGCGGGTAAACGGCGGGA.................................................................................................................................................................................................. 18 2 1 757.00 757 716 20 9 12 0 0
.........................................................................................................................CGCGGGTAAACGGCGGGAG................................................................................................................................................................................................. 19 3 9 421.78 3796 2965 685 109 37 0 0
........................................................................................................................GCGCGGGTAAACGGCGGGA.................................................................................................................................................................................................. 19 2 1 377.00 377 241 123 4 8 1 0
........................................................................................................................GCGCGGGTAAACGGCGGGAG................................................................................................................................................................................................. 20 3 3 244.33 733 620 106 4 2 1 0
........................................................................................................................GCGCGGGTAAACGGCGGG................................................................................................................................................................................................... 18 2 2 70.50 141 112 21 4 4 0 0
........................................................................................................................GCGCGGGTCAACGGCGGGA.................................................................................................................................................................................................. 19 3 6 50.33 302 141 119 16 12 10 4
.......................................................................................................................AGCGCGGGTAAACGGCGGGA.................................................................................................................................................................................................. 20 3 4 27.50 110 84 22 2 1 1 0
.........................................................................................................................CGCGGGTAAACGGCGGGAGC................................................................................................................................................................................................ 20 3 3 16.00 48 26 15 4 1 2 0
..........................................................................................................................GCGGGTAAACGGCGGGA.................................................................................................................................................................................................. 17 2 5 13.60 68 0 0 68 0 0 0
........................................................................................................................GCGCGGGTAAACGGCGGGAGC................................................................................................................................................................................................ 21 3 1 13.00 13 7 4 0 0 2 0
..........................................................................................................................GCGGGTAAACGGCGGTAGT................................................................................................................................................................................................ 19 3 9 8.78 79 18 60 1 0 0 0
.......................................................................................................................AGCGCGGGTAAACGGCGGG................................................................................................................................................................................................... 19 3 10 7.60 76 51 17 2 6 0 0
..........................................................................................................................GCGGGTAAACGGCGGGACT................................................................................................................................................................................................ 19 3 3 6.33 19 9 10 0 0 0 0
.......................................................................................................................AGCGCGGGTAAACGGCGG.................................................................................................................................................................................................... 18 2 4 5.00 20 18 0 1 1 0 0
........................................................................................................................GCGCGGGTAAACGGCGGTAGT................................................................................................................................................................................................ 21 3 2 4.00 8 2 6 0 0 0 0
.........................................................................................................................CGCGGGTAAACGGCGGGACT................................................................................................................................................................................................ 20 3 1 4.00 4 1 1 1 1 0 0
.........................................................................................................................CGCGGGTAAACGGCGGTAGT................................................................................................................................................................................................ 20 3 4 3.75 15 5 9 1 0 0 0
.........................................................................................................................CGCGGGTAAACGGCGGTAG................................................................................................................................................................................................. 19 2 1 3.00 3 0 3 0 0 0 0
..........................................................................................................................GCGGGTAAACGGCGGTAG................................................................................................................................................................................................. 18 2 3 3.00 9 5 4 0 0 0 0
........................................................................................................................GCGCGGGAAAACGGCGGGAGT................................................................................................................................................................................................ 21 3 1 2.00 2 1 1 0 0 0 0
........................................................................................................................GCTCGGGTAAACGGCGGGA.................................................................................................................................................................................................. 19 3 2 2.00 4 2 1 1 0 0 0
.........................................................................................................................CGCGGGAAAACGGCGGGAGT................................................................................................................................................................................................ 20 3 3 1.67 5 4 1 0 0 0 0
........................................................................................................................GCGCGGGTAAACGGTGGGA.................................................................................................................................................................................................. 19 3 9 1.67 15 1 14 0 0 0 0
........................................................................................................................GCGTGGGTAAACGGCGGGA.................................................................................................................................................................................................. 19 3 8 1.25 10 8 2 0 0 0 0
.........................................................................................................................CGCGGGTAAACGGTGGGA.................................................................................................................................................................................................. 18 3 19 1.16 22 9 12 0 1 0 0
........................................................................................................................GCGCGGGTAAACGTCGGGA.................................................................................................................................................................................................. 19 3 2 1.00 2 1 1 0 0 0 0
........................................................................................................................GCGCGGGTCAACGGCGGGAC................................................................................................................................................................................................. 20 3 1 1.00 1 0 0 0 0 1 0
.........................................................................................................................CGCGGGTAAACGGCGGTA.................................................................................................................................................................................................. 18 1 1 1.00 1 1 0 0 0 0 0
........................................................................................................................GCGCGGGTAAACGGCGGGACT................................................................................................................................................................................................ 21 3 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................GCGGGTAAACGGCGGGACC................................................................................................................................................................................................ 19 2 1 1.00 1 0 0 0 0 1 0
.........................................................................................................................CGCGGGTAAACGGCGGAAC................................................................................................................................................................................................. 19 2 1 1.00 1 0 0 1 0 0 0
.............................................ACCTGGTAAGTATGTGTA.............................................................................................................................................................................................................................................................................. 18 1 1 1.00 1 0 0 0 0 1 0
........................................................................................................................GCGCGGGAAAACGGCGGGAG................................................................................................................................................................................................. 20 2 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................GAATCAACAGAGTTGCAGCAGA.............. 22 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................CGCGGGTAAACGGCGGTAC................................................................................................................................................................................................. 19 1 1 1.00 1 0 0 0 1 0 0
........................................................................................................................GCGCGGGTAAACGGCGGA................................................................................................................................................................................................... 18 2 2 1.00 2 0 2 0 0 0 0
.......................................................................................................................CGCGCGGGTAAACGGCGGGAG................................................................................................................................................................................................. 21 3 2 1.00 2 2 0 0 0 0 0
.............CAGACGCTTAGCGCAGATCCAAATGT...................................................................................................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0
.........................................................................................................................CGCGGGTAAACGGCGGGAC................................................................................................................................................................................................. 19 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................GCGGGAAAACGGCGGGAGT................................................................................................................................................................................................ 19 3 9 0.89 8 1 7 0 0 0 0
......................................................................................................................AAGCGCGGGTAAACGGCGG.................................................................................................................................................................................................... 19 3 16 0.81 13 11 1 1 0 0 0
........................................................................................................................TCGCGGGTAAACGGCGGGA.................................................................................................................................................................................................. 19 3 4 0.75 3 3 0 0 0 0 0
........................................................................................................................GTGCGGGTAAACGGCGGGA.................................................................................................................................................................................................. 19 3 12 0.58 7 4 3 0 0 0 0
..........................................................................................................................GCGGGTAAACGGCGGGATC................................................................................................................................................................................................ 19 3 4 0.50 2 1 0 1 0 0 0
.........................................................................................................................CGCGGGTAAACGGCGGGAT................................................................................................................................................................................................. 19 3 2 0.50 1 0 0 0 1 0 0
......................................................................................................................AAGCGCGGGAAAACGGCGGG................................................................................................................................................................................................... 20 3 2 0.50 1 1 0 0 0 0 0
..........................................................................................................................GCGGGAAAACGGCGGGAG................................................................................................................................................................................................. 18 2 2 0.50 1 1 0 0 0 0 0
.........................................................................................................................CGCGGGCAAACGGCGGGA.................................................................................................................................................................................................. 18 2 2 0.50 1 0 0 0 1 0 0
.........................................................................................................................CTCGGGTAAACGGCGGGA.................................................................................................................................................................................................. 18 3 8 0.50 4 2 1 0 0 1 0
..................................................GTAAGTATGTGTGTGTGAG........................................................................................................................................................................................................................................................................ 19 0 2 0.50 1 0 0 0 0 1 0
.......................................................................................................................AGCGCGGGACAACGGCGGGA.................................................................................................................................................................................................. 20 3 2 0.50 1 0 1 0 0 0 0
.........................................................................................................................CGCGGGTAAATGGCGGGA.................................................................................................................................................................................................. 18 3 20 0.40 8 4 4 0 0 0 0
..........................................................................................................................GCGGGTCAACGGCGGTA.................................................................................................................................................................................................. 17 2 6 0.33 2 0 0 2 0 0 0
.........................................................................................................................CGCGGGTAAACGGCGGTATT................................................................................................................................................................................................ 20 3 3 0.33 1 1 0 0 0 0 0
.........................................................................................................................CGCGGGGAAACGGCGGGAGC................................................................................................................................................................................................ 20 3 3 0.33 1 0 0 0 1 0 0
.......................................................................................................................GGCGCGGGTAAACGGCGGGA.................................................................................................................................................................................................. 20 3 3 0.33 1 0 1 0 0 0 0
............................................................................................................................................................................TGAGATTGTCGGTTGAATAGCT........................................................................................................................................... 22 3 3 0.33 1 0 0 1 0 0 0
...........................................................................................................................CGGGTAAACGGCGGGAC................................................................................................................................................................................................. 17 2 4 0.25 1 0 0 1 0 0 0
........................................................................................................................GCGCGGGTCAACGGCGGTCC................................................................................................................................................................................................. 20 3 4 0.25 1 0 0 0 0 1 0
...................................................................................................................TGTGCGCGCGTGAAAGCGGCT..................................................................................................................................................................................................... 21 3 4 0.25 1 0 0 0 1 0 0
........................................................................................................................GCGCGGGTAATCGGCGGGA.................................................................................................................................................................................................. 19 3 4 0.25 1 1 0 0 0 0 0
.........................................................................................................................CGCGGGTAAACGGCGGCA.................................................................................................................................................................................................. 18 2 4 0.25 1 0 0 1 0 0 0
...........................................................................................................................CGGGTAAACGGCGGGA.................................................................................................................................................................................................. 16 2 14 0.21 3 0 0 3 0 0 0
..........................................................................................................................GCGGGCAAACGGCGGAAC................................................................................................................................................................................................. 18 2 5 0.20 1 0 0 1 0 0 0
........................................................................................................................GCGCGGGTAAACGCCGGGA.................................................................................................................................................................................................. 19 3 5 0.20 1 0 1 0 0 0 0
.......................................................................................................................CGCGCGGGTCAACGGCGG.................................................................................................................................................................................................... 18 2 5 0.20 1 1 0 0 0 0 0
..........................................................................................................................GCGGGTAAACGGCGGGAGCT............................................................................................................................................................................................... 20 3 5 0.20 1 0 0 0 1 0 0
..........................................................................................................................GCGGGTAAACGGCGGGAT................................................................................................................................................................................................. 18 3 20 0.20 4 2 2 0 0 0 0
..........................................................................................................................GCGGGAAAACGGCGGGAGG................................................................................................................................................................................................ 19 3 17 0.18 3 0 3 0 0 0 0
........................................................................................................................ACGCGGGTAAACGGCGGGA.................................................................................................................................................................................................. 19 3 6 0.17 1 1 0 0 0 0 0
.........................................................................................................................CGCGGGTAAACGGCGGGCC................................................................................................................................................................................................. 19 3 6 0.17 1 1 0 0 0 0 0
........................................................................................................................CCGCGGGTAAACGGCGGGA.................................................................................................................................................................................................. 19 3 20 0.15 3 3 0 0 0 0 0
.........................................................................................................................CGCGGGTAAACGGCGGAG.................................................................................................................................................................................................. 18 3 20 0.15 3 1 2 0 0 0 0
...........................................................................................................................CGGGTAAACGGCGGGACT................................................................................................................................................................................................ 18 3 14 0.14 2 0 2 0 0 0 0
...................................................................................................................TGTGCGCGTGGTAAACCGGC...................................................................................................................................................................................................... 20 3 7 0.14 1 0 0 1 0 0 0
.......................................................................................................................AGCGCGGGCAAACGGCGGGA.................................................................................................................................................................................................. 20 3 7 0.14 1 0 0 1 0 0 0
........................................................................................................................GCGCGGGTAAATGGCGGGA.................................................................................................................................................................................................. 19 3 14 0.14 2 1 1 0 0 0 0
............................................................................................................................................................................TGAGTTTGTAGCTTGAGTAG............................................................................................................................................. 20 3 7 0.14 1 0 0 1 0 0 0
........................................................................................................................GCGCGGGTAAACGGCGGGG.................................................................................................................................................................................................. 19 3 8 0.13 1 0 1 0 0 0 0
........................................................................................................................GCACGGGTAAACGGCGGGA.................................................................................................................................................................................................. 19 3 8 0.13 1 1 0 0 0 0 0
........................................................................................................................GCGCGGGTAAACGGGAGTA.................................................................................................................................................................................................. 19 3 8 0.13 1 0 1 0 0 0 0
..........................................................................................................................GCGGGTAAACGGCGGGAAC................................................................................................................................................................................................ 19 3 9 0.11 1 0 1 0 0 0 0
.........................................................................................................................CGCGGGTCAACGGCGGGAC................................................................................................................................................................................................. 19 3 9 0.11 1 0 0 0 0 1 0
........................................................................................................................GCGCGGGTAAACGGCGGCAG................................................................................................................................................................................................. 20 3 9 0.11 1 0 1 0 0 0 0
........................................................................................................................GCGCGGGTAAACGGCGTGA.................................................................................................................................................................................................. 19 3 9 0.11 1 0 1 0 0 0 0
.........................................................................................................................CGCGGGTAAACGGCGGTGG................................................................................................................................................................................................. 19 3 9 0.11 1 0 0 0 1 0 0
.........................................................................................................................CGCGGGTAAACTGCGGGA.................................................................................................................................................................................................. 18 3 20 0.10 2 2 0 0 0 0 0
........................................................................................................................GCGCGGGTAAAGGGCGGGA.................................................................................................................................................................................................. 19 3 11 0.09 1 1 0 0 0 0 0
.....................................................................................................................TAAGCGCGGGTAAACGGCG..................................................................................................................................................................................................... 19 3 12 0.08 1 0 1 0 0 0 0
.........................................................................................................................CGCGGGTAAACCGCGGGA.................................................................................................................................................................................................. 18 3 12 0.08 1 1 0 0 0 0 0
.............................ATCCAAATGTCGGTAGGGC............................................................................................................................................................................................................................................................................................. 19 3 12 0.08 1 0 1 0 0 0 0
..........................................................................................................................GCGGGTAAACGGCGGGACG................................................................................................................................................................................................ 19 3 13 0.08 1 0 0 0 1 0 0
...........................................................................................................................CGGGAAAACGGCGGGAA................................................................................................................................................................................................. 17 2 14 0.07 1 0 0 1 0 0 0
.........................................................................................................................CGCGGGTAAACGACGGGA.................................................................................................................................................................................................. 18 3 14 0.07 1 0 1 0 0 0 0
........................................................................................................................TCGCGGGTAAACGGCGGG................................................................................................................................................................................................... 18 3 15 0.07 1 1 0 0 0 0 0
.......................................................................................................................AGCGCGGGTCAACGGCGGT................................................................................................................................................................................................... 19 3 15 0.07 1 0 0 0 0 1 0
........................................................................................................................GCGCGGGTAAACGTCGGG................................................................................................................................................................................................... 18 3 16 0.06 1 1 0 0 0 0 0
........................................................................................................................GCGCGGGTTAACGGCGGGA.................................................................................................................................................................................................. 19 3 18 0.06 1 1 0 0 0 0 0
...........................................................................................................................CGGGTAAACGGCGGGAAC................................................................................................................................................................................................ 18 3 18 0.06 1 1 0 0 0 0 0
..........................................................................................................................GCGGGTAAACGGCAGGAC................................................................................................................................................................................................. 18 3 20 0.05 1 0 0 1 0 0 0
.........................................................................................................................CGCGGGTAAACGGGAGTA.................................................................................................................................................................................................. 18 3 20 0.05 1 0 1 0 0 0 0
........................................................................................................................CCGCGGGTAAACGGCGGG................................................................................................................................................................................................... 18 3 20 0.05 1 1 0 0 0 0 0
..........................................................................................................................GCGGGCAAACGGCGGGA.................................................................................................................................................................................................. 17 2 20 0.05 1 0 0 1 0 0 0
.........................................................................................................................AGCGGGTAAACGGCGGGA.................................................................................................................................................................................................. 18 3 20 0.05 1 1 0 0 0 0 0
.........................................................................................................................CGCGGGTAAACGGCGGGAA................................................................................................................................................................................................. 19 3 20 0.05 1 1 0 0 0 0 0
.........................................................................................................................CGCGGGTTAACGGCGGGA.................................................................................................................................................................................................. 18 3 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

GCCGATAAACGTTGTCTGCGAATCGCGTCTAGGTTTACAGGCATCTGGACCATTCATACACACACACTCGTATTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTTGTAGCTTAATAACACGCGCGCCCTTTTGCCGCCATGGAATCGCCCGAGTAGTTTAGTTGCCGTTTTTTACTCTAACAACTAACTCATCGAGAGAAAGAGAAAATTAGAGAATGCTTGTATAGAACACGCCAACACGTCTAGATCTTATTTTGTACAAAAATAAAAAAAAGATATTTGTCGGCTTTTCAACAACCTTAGTTGTCTCAACGTCGTCTTAATAGGCCAAGAA
**************************************************...((.((.(((......((((((((..((((((..((((((((((((((((.((..........((.((.((((((...((....)).)))..))).)).))((((.(((((((............))))))))))))).))))))))))))))))..)))))).........))))))))......))).))))(((((((((.....)))))))))..............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V049
head
................................................................................................CTCTCGTTGTAGCTTAGTAAC........................................................................................................................................................................................................................ 21 1 1 1.00 1 1 0
.......................................................................................................................................CCATGGGATGGCCTGAGTA................................................................................................................................................................................... 19 3 2 0.50 1 0 1
...............................................................................................................................................................................................................................................GTCTTGCTCTTATTTGGTACAA........................................................................ 22 3 4 0.25 1 1 0
.....................................................................................................................................................................................................AAAAAGAAAATTAGCGAAGGC................................................................................................................... 21 3 10 0.10 1 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6500:5697024-5697356 + dmo_1466 CGGCTA--------------------------------TTTGCAACAGACGCTTAGCGCAGATCCAAATGTCCGTAGACCTGGTAAGTATGTGTG--------------T--GTGAGCAT--AAGAGAG-AGAGAGAGAGAGAGA------GAGAGAGCAACATCGAATT-------------ATT--GTG-----------CGCGCGGGAAAACGGCGGTACCTTAGCGGGCTCATC------------------------------------AAATCAACGGCAAAAAATGAGA-----TTGTTGATTGAGTAGCTCTCTTTCT----CTTTTAATCTC--TTACGAACATATCTTGTGCGGTTGTGCAGATCTAGAATAAAACA-TGTTTTTATTTTTTTTCTATAAACAGCCGAAAAGTTGTTGGAATCAACAGAGTTGCAGCAGAATTATCCGGTTCTT
droVir3 scaffold_12963:13941958-13942260 - dvi_11685 CGGTTA--------------------------------TTTGCAACAGACGCTCAGCGCGGACCCAAATGTCCGCAGACCCGGTGAGTATGAGAGAGCGCGTGTGTGTGT--G--TGAGTTTAAA----------------------------GGGAG---CATAAGGTG-------------GTTGAGCG-----------CGCGCGGGAAAACGGCGGCACCTTAGCG-GTTTACA------------------------------------AAATCAACGGCAAAAAGTGAGAGTTGATTGCTGGT----CAACTCTCTTTCG----CTCTCTTCCCCATTTGCAATCATGCCTT---CGGCT------------AATCTAACA-T---TCT-ATTTTG-----GATGCAGCGGAAAAGTTGCTGGAGTCAACGGAATTGCAACAAAACTATCCGGTGCTG
droGri2 scaffold_15126:5950257-5950510 + CGGTTA--------------------------------TTTGCAACAGACGCTCAGCGCAGATCCAAATGTTCGCAGACCCGGTGAGTGTACGAGAGCATGCTTGTATGTGCTT--------AAA-AAAAAGAGAGGCAGACAGAGCGACTGAGGGAA---------------------------C--GCG-----------CGCGCGGGAAAACGGCGGCA------------------------------------------------------AACAATGGGAATAAATGCA------------------------TTTCTCG----CTCTCTTTTT-------------------------A------------AATTTAACA-T---TTT-TTTTTT-----TTCAAAGCGGAAAAGTTGCTGGAGTCGACGGAATTGCAGCAGAATTATCCGGTGCTG
droWil2 scf2_1100000004577:1204394-1204719 - TGGATA--------------------------------TTTGCAACAGACGCTTAGCGCCGATCCCAATGTACGCCGGCCGGGTGAGTATGCGAT-------------GTGGTTGATCAT--GGGAAAGAAGGGAGGGAGAAA---AGATTGGGGGTT----AACGGGGTGCTTGAAATGCATATG--GCGTGTGCGTGTACTGCGCGGGAAATGTATGAGTCTCGAGGT-ATTTGCCAAAATACATGAGATTGAGAAATACCGTAACAAGATCTAAATAATATAT---------------------------------TACTTTCCACATATTATTTAT-------------------------T------------AATTTTTTAAT---TTT----ATTT----TTAATAGCCGAAAAACTCTTGGAGTCCACGGAATTGCAACAGAATTACGCCGTCCTC
dp5 4_group3:2949298-2949357 + CGGGTA--------------------------------TTTGCAGCAGACGCTCAGCGCCGATCCAAACGTACGCCGGCCGGGTAAGTGTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_1:4435952-4436011 + CGGGTA--------------------------------TTTGCAGCAGACGCTCAGCGCCGATCCAAACGTACGCCGGCCGGGTAAGTGTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_12916:7393571-7393633 - CGGATA--------------------------------TTTGCAGCAGACGCTGAGCGCCGATCCAAATGTTCGCCGGCCGGGTGAGTGTTTGCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396554:11303-11365 - CGGATA--------------------------------TTTGCAGCAGACGCTGAGCGCCGATCCAAATGTTCGCCGGCCCGGTGAGTGTTTGCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302472:101743-101819 - CGGTTA--------------------------------TTTGCAGCAGACGCTGAGTGCCGATCCAAATGTCCGCCGGCCGGGTAAGTGTGTGGGGGAATGTGTGTGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000454078:758174-758241 - CGGTTA--------------------------------TTTGCAGCAGACGCTGAGCGCCGATCCAAATGTCCGCCGACCGGGTGAGTGTGTCTG--------------T--G--GGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000490579:516211-516337 + TTTTTA--------------------------------TTTTTT-------------------------------------------------------------TATC---------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATTAACGAAA---------------------------------TATTTAG----TACTCTTTATAATAAACTATAAT---------------------------------------TTC---TCTCCTCAATCTTCAGCCGAAAAACTCTTGGAGTCTACGGAACTGCAGCAGAATTACCCCATTCTG
droRho1 scf7180000767601:378-503 - TCTTGTTTTATGTTTTAAGGTATAATATTATGTATGTAGTTCTAATAAGCACTATTTTTCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCCTCAATATTCAGCCGAAAAACTCTTGGAGTCTACGGAACTGCAGCAAAATTATCCCATACTG
droBia1 scf7180000301468:998442-998506 - CGGTTA--------------------------------TTTGCAGCAGACGCTGAGCGCCGATCCAAATGTCCGCCGGCCGGGTGAGTGTGTGTG--------------T--G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415914:582013-582080 - CGGTTA--------------------------------TTTGCAGCAGACGCTGAGCGCCGATCCAAATGTCCGCCGGCCGGGTGAGTGTGTCTG--------------T--G--GGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000408961:397638-397714 - CGGTTA--------------------------------TTTGCAGCAGACTCTGAGCGCCGATCCAAATGTCCGCCGGCCGGGTAAGTGTATGGGAATGCGTGTGCACA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chr2L:16824960-16825031 - CGGTTA--------------------------------TTTGCAGCAGACGCTGAGCGCCGATCCCAATGTCCGCCGGCCGGGTGAGTGTGTGTG--------------T--GTAGGAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 2l:16391404-16391498 - TATGTA--------------------------------GTTCTAACAAACACACCATTTCCTTCTCTACT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTATAGCCGAAAAACTTTTGGAATCCACGGAACTGCAGCAGAATTACCCGATCTTA
droSec2 scaffold_7:470016-470110 - TATGTA--------------------------------GTTCTAACAAACACACCATTTCCTTCTCTACT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTATAGCCGAAAAACTTTTGGAATCAACGGAACTGCAGCAGAATTACCCGATCCTA
droYak3 2R:4275983-4276050 + CGGTTA--------------------------------TTTGCAGCAGACGCTGAGCGCCGATCCAAATGTCCGCCGGCCGGGTAAGTGTGTGTG--------------T--A--GGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4845:19895465-19895532 - CGGTTA--------------------------------TTTGCAGCAGACGCTGAGCGCCGATCCAAATGTCCGCCGGCCGGGTGAGTGTGTGTG--------------T--A--GGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
CGGCTA--------------------------------TTTGCAACAGACGCTTAGCGCAGATCCAAATGTCCGTAGACCTGGTAAGTATGTGTG--------------T--GTGAGCAT--AAGAGAG-AGAGAGAGAGAGAGA------GAGAGAGCAACATCGAATT-------------ATT--GTG-----------CGCGCGGGAAAACGGCGGTACCTTAGCGGGCTCATC------------------------------------AAATCAACGGCAAAAAATGAGA-----TTGTTGATTGAGTAGCTCTCTTTCT----CTTTTAATCTC--TTACGAACATATCTTGTGCGGTTGTGCAGATCTAGAATAAAACA-TGTTTTTATTTTTTTTCTATAAACAGCCGAAAAGTTGTTGGAATCAACAGAGTTGCAGCAGAATTATCCGGTTCTTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............................................................................ACCTGGTAAGTATGTGTA--------------...................................................................................................................................................................................................................................................................................................................................................................1811.001000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCAACAGAGTTGCAGCAGA..............2211.001100000
.............................................CAGACGCTTAGCGCAGATCCAAATGT.........................................................................................................................................................................................................................................................................................................................................................................................................2611.001000100
..................................................................................GTAAGTATGTGTG--------------T--GTGAG...........................................................................................................................................................................................................................................................................................................................................................1920.501000010
droVir3
CGGTTA--------------------------------TTTGCAACAGACGCTCAGCGCGGACCCAAATGTCCGCAGACCCGGTGAGTATGAGAGAGCGCGTGTGTGTGT--G--TGAGTTTAAA----------------------------GGGAG---CATAAGGTG-------------GTTGAGCG-----------CGCGCGGGAAAACGGCGGCACCTTAGCG-GTTTACA------------------------------------AAATCAACGGCAAAAAGTGAGAGTTGATTGCTGGT----CAACTCTCTTTCG----CTCTCTTCCCCATTTGCAATCATGCCTT---CGGCT------------AATCTAACA-T---TCT-ATTTTG-----GATGCAGCGGAAAAGTTGCTGGAGTCAACGGAATTGCAACAAAACTATCCGGTGCTGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................AGACGCTCAGCGCGGACCCAAAT...........................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTTGCTGGAGTCAACGGA.........................2011.001000000000000000000000010000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGGAGTCAACGGAATTG.....................2011.001000000000000000000000000000000000000000000000000000000000000100
...........................................................................................................................................................................................................GCGCGGGAAAACGGCGGG...................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTTGCTGGAGTCAACGGAAT.......................2411.001000000000000000000000000000000000000000100000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAACGGAATTGCAACAAAACT...........2311.001000000000000010000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAAAAGTTGCTGGAGTCA..............................2111.001001000000000000000000000000000000000000000000000000000000000000
droGri2
CGGTTA--------------------------------TTTGCAACAGACGCTCAGCGCAGATCCAAATGTTCGCAGACCCGGTGAGTGTACGAGAGCATGCTTGTATGTGCTT--------AAA-AAAAAGAGAGGCAGACAGAGCGACTGAGGGAA---------------------------C--GCG-----------CGCGCGGGAAAACGGCGGCA------------------------------------------------------AACAATGGGAATAAATGCA------------------------TTTCTCG----CTCTCTTTTT-------------------------A------------AATTTAACA-T---TTT-TTTTTT-----TTCAAAGCGGAAAAGTTGCTGGAGTCGACGGAATTGCAGCAGAATTATCCGGTGCTGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTTGCTGGAGTCGACGGA.........................2211.00110
droWil2
TGGATA--------------------------------TTTGCAACAGACGCTTAGCGCCGATCCCAATGTACGCCGGCCGGGTGAGTATGCGAT-------------GTGGTTGATCAT--GGGAAAGAAGGGAGGGAGAAA---AGATTGGGGGTT----AACGGGGTGCTTGAAATGCATATG--GCGTGTGCGTGTACTGCGCGGGAAATGTATGAGTCTCGAGGT-ATTTGCCAAAATACATGAGATTGAGAAATACCGTAACAAGATCTAAATAATATAT---------------------------------TACTTTCCACATATTATTTAT-------------------------T------------AATTTTTTAAT---TTT----ATTT----TTAATAGCCGAAAAACTCTTGGAGTCCACGGAATTGCAACAGAATTACGCCGTCCTCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGGAGTCCACGGAATTGC....................2011.00100100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCCACGGAATTGCAACAGAAT............2311.00100010
.........................................................................................................................................................GGGTT----AACGGGGTGCTTGAG...............................................................................................................................................................................................................................................................................................2011.00100001
.............................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAAAAACTCTTGGAGTCCA.............................2211.00101000
.............................................................................................................................AAAGAAGGGAGGGAGAAA---AGA...........................................................................................................................................................................................................................................................................................................................2111.00100100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCCACGGAATTGCAACAGA..............2111.00100100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCCACGGAATTGCAACAG...............2011.00100010
........................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGGAGTCCACGGAATTGCAACAGAA.............2711.00100100
.......................................TTGCAACAGACGCTTAGCGCCGATCCCA.............................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000
............................................................GATCCCAATGTACGCCGGC.................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
.....................................................................................................................CAT--GGGAAAGAAGGGAGGGAG....................................................................................................................................................................................................................................................................................................................................2111.00100010
dp5
CGGGTA--------------------------------TTTGCAGCAGACGCTCAGCGCCGATCCAAACGTACGCCGGCCGGGTAAGTGTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....A--------------------------------TTTGCAGCAGACGCTCAGCGCC....................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010000000
droPer2
CGGGTA--------------------------------TTTGCAGCAGACGCTCAGCGCCGATCCAAACGTACGCCGGCCGGGTAAGTGTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................CGATCCAAACGTACGCCGGC.................................................................................................................................................................................................................................................................................................................................................................................................2013.003300000
droAna3
CGGATA--------------------------------TTTGCAGCAGACGCTGAGCGCCGATCCAAATGTTCGCCGGCCGGGTGAGTGTTTGCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.GGATA--------------------------------TTTGCAGCAGACGCTGAGCGC.....................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
.......................................TTGCAGCAGACGCTGAGCGCCGATCC...............................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
droBip1
CGGATA--------------------------------TTTGCAGCAGACGCTGAGCGCCGATCCAAATGTTCGCCGGCCCGGTGAGTGTTTGCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
CGGTTA--------------------------------TTTGCAGCAGACGCTGAGTGCCGATCCAAATGTCCGCCGGCCGGGTAAGTGTGTGGGGGAATGTGTGTGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
CGGTTA--------------------------------TTTGCAGCAGACGCTGAGCGCCGATCCAAATGTCCGCCGACCGGGTGAGTGTGTCTG--------------T--G--GGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TTTTTA--------------------------------TTTTTT-------------------------------------------------------------TATC---------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATTAACGAAA---------------------------------TATTTAG----TACTCTTTATAATAAACTATAAT---------------------------------------TTC---TCTCCTCAATCTTCAGCCGAAAAACTCTTGGAGTCTACGGAACTGCAGCAGAATTACCCCATTCTGSizeHit CountTotal NormTotal
No Reads
droRho1
TCTTGTTTTATGTTTTAAGGTATAATATTATGTATGTAGTTCTAATAAGCACTATTTTTCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCCTCAATATTCAGCCGAAAAACTCTTGGAGTCTACGGAACTGCAGCAAAATTATCCCATACTGSizeHit CountTotal NormTotal
No Reads
droBia1
CGGTTA--------------------------------TTTGCAGCAGACGCTGAGCGCCGATCCAAATGTCCGCCGGCCGGGTGAGTGTGTGTG--------------T--G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
CGGTTA--------------------------------TTTGCAGCAGACGCTGAGCGCCGATCCAAATGTCCGCCGGCCGGGTGAGTGTGTCTG--------------T--G--GGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
CGGTTA--------------------------------TTTGCAGCAGACTCTGAGCGCCGATCCAAATGTCCGCCGGCCGGGTAAGTGTATGGGAATGCGTGTGCACA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
CGGTTA--------------------------------TTTGCAGCAGACGCTGAGCGCCGATCCCAATGTCCGCCGGCCGGGTGAGTGTGTGTG--------------T--GTAGGAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................GCAGACGCTGAGCGCCGATCC...............................................................................................................................................................................................................................................................................................................................................................................................................2116.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................TGCAGCAGACGCTGAGCGCCGATCCCA.............................................................................................................................................................................................................................................................................................................................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................AGCAGACGCTGAGCGCCGATCCC..............................................................................................................................................................................................................................................................................................................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...TTA--------------------------------TTTGCAGCAGACGCTGAGCGCCGA..................................................................................................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000100000000000100000
.................................................................CAATGTCCGCCGGCCGGGTGA..........................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000010000000000000000000000000000
..............................................AGACGCTGAGCGCCGATCCCAATGT.........................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................TTTGCAGCAGACGCTGAGCGC.....................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................CCGATCCCAATGTCCGCC....................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................CCGATCCCAATGTCCGCCG...................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................TTTGCAGCAGACGCTGAGCGCCG...................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
.................................................CGCTGAGCGCCGATCCCAATGTC........................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
........................................................CGCCGATCCCAATGTCCGCCG...................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
.......................................TTGCAGCAGACGCTGAGCGCCGATCCC..............................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...............................................GACGCTGAGCGCCGATCCCA.............................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................CGATCCCAATGTCCGCCGGCCG...............................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................TTGCAGCAGACGCTGAGCGCCG...................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................CAGACGCTGAGCGCCGATCCC..............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................AGACGCTGAGCGCCGATCCCA.............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................AGCAGACGCTGAGCGCCGAT.................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....TA--------------------------------TTTGCAGCAGACGCTGAGCGCCG...................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................ATCCCAATGTCCGCCGGCCGG..............................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...............................................................CCCAATGTCCGCCGGCCGGC.............................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
..............................................................TCCCAATGTCCGCCGGCCG...............................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
..............................................AGACGCTGAGCGCCGATCCCAAT...........................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
........................................TGCAGCAGACGCTGAGCGCCGA..................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
.......................................TTGCAGCAGACGCTGAGCGCC....................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................AGCGCCGATCCCAATGTCCGC.....................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.........................................................GCCGATCCCAATGTCCGCCGG..................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
.......................................TTGCAGCAGACGCTGAGCGCCGA..................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...................................................CTGAGCGCCGATCCCAATGTCCGC.....................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................GCCGGCCGGGTGAGTGTGTGTG--------------...................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
........................................TGCAGCAGACGCTGAGCGCCG...................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
......................................TTTGCAGCAGACGCTGAGCGCCGATC................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................GCCGGGTGAGTGTGTGTG--------------...................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.....A--------------------------------TTTGCAGCAGACGCTGAGCGCC....................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................TGAGCGCCGATCCCAATGTCCGCCGG..................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000
.................................................CGCTGAGCGCCGATCCCAATGTCCGCCG...................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
droSim2
TATGTA--------------------------------GTTCTAACAAACACACCATTTCCTTCTCTACT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTATAGCCGAAAAACTTTTGGAATCCACGGAACTGCAGCAGAATTACCCGATCTTASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TCCACGGAACTGCAGCAGAATTACCCGA.....2813.00300000000200010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAATCCACGGAACTGCAGCAGA..............2511.00100000000000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAATCCACGGAACTGCAGCAGAA.............2611.00100000010000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCACGGAACTGCAGCA................1811.00100010000000000000
droSec2
TATGTA--------------------------------GTTCTAACAAACACACCATTTCCTTCTCTACT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTATAGCCGAAAAACTTTTGGAATCAACGGAACTGCAGCAGAATTACCCGATCCTASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGGAATCAACGGAACTGCAGC.................2411.0010100
droYak3
CGGTTA--------------------------------TTTGCAGCAGACGCTGAGCGCCGATCCAAATGTCCGCCGGCCGGGTAAGTGTGTGTG--------------T--A--GGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................................GCAGACGCTGAGCGCCGATCCAA.............................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
droEre2
CGGTTA--------------------------------TTTGCAGCAGACGCTGAGCGCCGATCCAAATGTCCGCCGGCCGGGTGAGTGTGTGTG--------------T--A--GGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.GGTTA--------------------------------TTTGCAGCAGACGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001000

Generated: 05/18/2015 at 12:35 AM