ID:

dmo_1433

 Coordinate:

scaffold_6500:1102838-1102927 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-5.9 -5.6 -5.6 -5.5

Flybase annnotation

exon [dmoj_GLEANR_1774:2]; CDS [Dmoj\GI16971-cds]; exon [dmoj_GLEANR_1774:1]; CDS [Dmoj\GI16971-cds]; intron [Dmoj\GI16971-in]

Repeatable elements

NameClassFamilyStrand
Gypsy8-I_Dpse-intLTRGypsy+
TART_DVLINEJockey+
mature
  1. scaffold_6308:2126811-2126830 +
  2. scaffold_6328:2916289-2916308 +
  3. scaffold_6473:9478323-9478342 +
  4. scaffold_6496:10336845-10336864 +
  5. scaffold_6496:11587172-11587191 +
  6. scaffold_6496:13828895-13828914 +
  7. scaffold_6496:16645286-16645305 +
  8. scaffold_6496:20200773-20200792 +
  9. dmo_1433  scaffold_6500:1102852-1102871 +
  10. scaffold_6500:1487296-1487315 +
  11. scaffold_6500:7425721-7425740 +
  12. scaffold_6500:10882347-10882366 +
  13. scaffold_6500:14670222-14670241 +
  14. scaffold_6540:15908125-15908144 +
  15. scaffold_6540:17410646-17410665 +
  16. scaffold_6540:18855697-18855716 +
  17. scaffold_6540:26288802-26288821 +
  18. scaffold_6540:31737295-31737314 +
  19. scaffold_6680:7845344-7845363 +
  20. scaffold_6680:10798482-10798501 +
  21. scaffold_6328:4104839-4104858 +
  22. scaffold_6473:2183433-2183452 +
  23. scaffold_6473:3691401-3691420 +
  24. scaffold_6496:3233497-3233516 +
  25. scaffold_6496:12253813-12253832 +
  26. scaffold_6496:20227649-20227668 +
  27. scaffold_6500:18717995-18718014 +
  28. scaffold_6500:23267718-23267737 +
  29. scaffold_6500:24863326-24863345 +
  30. scaffold_6500:27163480-27163499 +
  31. scaffold_6540:1514503-1514522 +
  32. scaffold_6540:7792961-7792980 +
  33. scaffold_6540:31478005-31478024 +
  34. scaffold_6680:1821020-1821039 +
  35. scaffold_6680:3021902-3021921 +
  36. scaffold_6680:5560461-5560480 +
  37. scaffold_6680:11592671-11592690 +
  38. scaffold_6680:14114977-14114996 +
  39. scaffold_6680:15778454-15778473 +
  40. scaffold_6680:17697826-17697845 +
star
  1. scaffold_2225:698-719 +
  2. scaffold_2225:936-957 +
  3. scaffold_3981:543-564 +
  4. scaffold_3981:576-597 +
  5. scaffold_3981:769-790 +
  6. scaffold_6328:375397-375418 +
  7. scaffold_6328:3562072-3562093 +
  8. scaffold_6359:84648-84669 +
  9. scaffold_6359:1948824-1948845 +
  10. scaffold_6473:5575808-5575829 +
  11. scaffold_6473:16124822-16124843 +
  12. dmo_1433  scaffold_6500:1102906-1102927 +
  13. scaffold_6500:8875621-8875642 +
  14. scaffold_6500:22497686-22497707 +
  15. scaffold_6500:26736980-26737001 +
  16. scaffold_6540:7640311-7640332 +
  17. scaffold_6540:15782350-15782371 +
  18. scaffold_6540:32043270-32043291 +
  19. scaffold_6680:2810381-2810402 +
  20. scaffold_6680:22993176-22993197 +

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------##################################################
CAGTCCAGTGCCAGCAGCAACCACTCCGACTCCGAGGAGGAGTTCGCTGAGTCAGCCAACCAGAGCAACAACAACAACAGCAGCAGCAGCAGCAACAATTGCAGCAACAGCAACAACAGCAACAGCAACAACAACAGCAGCAACACCAACAGCAATAACAAAGCTCTGCCTCTGGCGCCGCTCTCCTACA
****************************************************************..................................((((..................................))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body
................................................................GCAACAACAACAACAGCAGC.......................................................................................................... 20 0 20 0.20 4 4 0 0
........................................................................AACAACAGCAGCAGCAGCAGCAAC.............................................................................................. 24 0 20 0.05 1 0 1 0
.....................................................................AACAACAACAGCAGCAGCAGCAGCA................................................................................................ 25 0 20 0.05 1 1 0 0
........................................................................................................................AACAGCAACAACAACAGCAGC................................................. 21 0 20 0.05 1 0 1 0
................................................................GCAACAACAACAACAGCAGCAGCAGCAGC................................................................................................. 29 0 20 0.05 1 1 0 0
...................................................................ACAACAACAACAGCAGCAGCA...................................................................................................... 21 0 20 0.05 1 1 0 0
................................................................GCAACAACAACAACAGCAGCAGC....................................................................................................... 23 0 20 0.05 1 1 0 0
.........................................................................ACAACAGCAGCAGCAGCAGCAAC.............................................................................................. 23 0 20 0.05 1 0 1 0
..............................................................................................................................AACAACAACAGCAGCAACAC............................................ 20 0 20 0.05 1 0 0 1
......................................................................................................................GCAACAGCAACAACAACAGCAG.................................................. 22 0 20 0.05 1 1 0 0
.........................................................................................................................ACAGCAACAACAACAGCAGC................................................. 20 0 20 0.05 1 0 1 0
...........................................................................................................................AGCAACAACAACAGCAGCA................................................ 19 0 20 0.05 1 1 0 0
.................................................................................................................CAACAGCAACAGCAACAACAACAGC.................................................... 25 0 20 0.05 1 0 1 0
..........................................................................................................................CAGCAACAACAACAGCAGC................................................. 19 0 20 0.05 1 1 0 0
......................................................................................................................GCAACAGCAACAACAACAGCA................................................... 21 0 20 0.05 1 0 1 0

Anti-sense strand reads

GTCAGGTCACGGTCGTCGTTGGTGAGGCTGAGGCTCCTCCTCAAGCGACTCAGTCGGTTGGTCTCGTTGTTGTTGTTGTCGTCGTCGTCGTCGTTGTTAACGTCGTTGTCGTTGTTGTCGTTGTCGTTGTTGTTGTCGTCGTTGTGGTTGTCGTTATTGTTTCGAGACGGAGACCGCGGCGAGAGGATGT
**************************************************..................................((((..................................))))**************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V056
head
 V110
male body
................CGTTCGTGAGGCTGAGACTGC......................................................................................................................................................... 21 3 4 0.25 1 1 0
.....................................................TCGGTTGGTCGAGTTGTTG...................................................................................................................... 19 2 10 0.10 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6500:1102788-1102977 + dmo_1433 CAGTCCAG------------------------------------------------------T----------------------------------------------GCCAGCAGCAACCACTCCGACTCCGAGGAGGAGTTCGCTGAGT------------------------------------------------CAGCCAACCAG-AGCAACA---------------------------------------------------------ACA------------------------------AC------------------AA---CA---GCAGCA------GCAGCAGC------AACAATTGC-------------AGCAACAGCAA---------------CAACA------GCAAC---------A---------------GCAACAACAACAGCAGCAACACCA-----------------------AC----------------------------AGCA----ATAA--------------CAAAGCTCTGCCTCTGGCGCC---------GC------T-CTCCTACA
droVir3 scaffold_12855:889338-889518 - CATTCCAC---------------------------------------------------CACCAGCACAGCTACAC-------CTGCAGC-AGC-TATCAATGTGCAGCAACAGCAGCAGCAA----------------------------------------------------------------------------------------------------------------------CAACAGC------------------------------------------------AG---CA------TC------------------AT---CA---ACAGCA------GCAGCAGC------AACAG---------CA----GCAGCAGCAGCAACA------------ACA---------ACAGC---------A---------GCAACAACAACAG---CAGCAAC---AACA-----------------------AC----------------------------AACA----ACAA--------------CAA----------CAACTGAA-----TGTAG---CTCA--------GC
droGri2 scaffold_15110:17391584-17391754 + GCCC--AG------------------------------------------------------CT--------CCAG-------CAACAAC----------------------AGCATCAG----------------------------------------------------------------------------------------------CAACA---------------------ACAACAGCAG---------------------------------------------CAG---CAACAACAACAACAACAGCA------------------------------GCAA---C------A---A---------CAGC-AGCAGCAGCAGCA---------------ACA---A------CAAC---AGCAGCA---------------GCAACAG---CAGCAGC-------AGCAACAAC---A----------AC----------------------------AGCA----GCAA--------------CACAA-TCAACAACAACAACAGC---C---GC--------CCGCGCCG
droWil2 scf2_1100000004909:5956661-5956855 + AAGCACAG------------------------------------------------------C---------GCAG-------C-------------------------AACAGCAACAGCAG----------------------------------------------------------------------------------------------------------------GAACAGCAACGTCAGCAATTATTGTTTCAG------------------------------------------CGACAGCAACATCAACAACAGCAA---CA---GCAGCA------GGAACAGC------AAGAACAGC-------------AAGAACAGCAA---------------CAACA------ACAAC---------A---------------ACAACAA---CAACAGC--------------------AACACTATCAAC----------------------------AGCA----AACA--------------CACAG-CAACACTTATGAAAT---------GT------TGTACTCCCA
dp5 3:11444767-11444936 - AGGCACAG------------------------------------------------------C----------------------------------------------AACAGCAGCAGCAA----------------------------------------------------------------------------------------------------------------------CAGCAGGCTCAGCAGCAGGCTC---------------------------------AG---CAACAGCAACAACAACAGCA------------------------------GCAA---C------A---A---------CAGC-AACAACAACAGCA---------------ACA---A------CAGC---AGCAACA---------------GCAGCAG---CAGCAGC-------AGCAACAAC---A----------AC----------------------------AGCA----GCAA--------------CAGAA-GCTAAAGCAGGCTCA---------GG------CG--TCGTCA
droPer2 scaffold_76:249822-249994 + CAGTGCAATGTAACCCAGACACCGACCAAGCCTCGCACCCAACTGGAAGCTCTGGTCACCA-----------------------AGC----------------------A-------------------------------------------------------------------------------------------------------ACAGCAGCA------------------------------------------------------------------A---CAGCAGCAACA------GC------------------AG---CA---ACAACA------GCAGCAAC------AACAG---------CA----GCAACAACAGCA---------------GCA---A------CA---------------------ACAGCAGCAACAA---CAGCAGC--------------------AAC------------------A---A---CAGCAG----CAG----------------------------------------------------------------CAGCAACA
droAna3 scaffold_13117:3550078-3550232 - AATGGAAG---------------------------------------------------CAGCT--------AT-----------------------------------------------------------------------------------------------ACGCTCCACTTCAGTGCAGGTCGGTGCTCCGCCGCCCACAA---ACAACAACA------------------------------------------------------------------A---CAACAACAACA---------------GTAGC------AA---CA---ACAACA------GCAG---C------AGTAA---------CA-------------GTA---------------------------GCAAC---------AGCAACA---------ACAACAG---CAACAAC---AGCA----GCAGC----A---------AC---------A---ACA--------------------------------------------------------------------------------ACAACA
droBip1 scf7180000395832:64765-64928 + CAGC--AG------------------------------------------------------GT--------GCAG-------CAGCAGC-------------------------A----------------------------GGTC-------G-----------------------------------------CCACCGCCCACCA---GCAGCAACA------------------------------------------------------------------C---CAACAGCAGCAGCA---GC------------------AA---CA---ACAACA------GCAGCAAC------AACAA---------CA----GCAACAGCAGCA---------------GCA------------------------------ACAACACCAGCAGCAA---CAGCAGC--------------------AGC------------------ACCAACAAC----------AAC-------AG--------------CA-------------CGCCGC-----CGTAGC--CGCC--------GC
droKik1 scf7180000302388:1556340-1556528 - CGGCC-AG------------------------------------------------------C----------------------------------------------ACTTTCCACACC-------ACACGAAGATCGAGCATGCGGACTCCA-------CCACAACG-----------------------------GCCGCCCAGCA---GCAGCAACA------------------------------------------------------------------G---CAGCAGCAGCA------AC------------------AA---CA---GCAGCA------GCAACAGC------AACAA---------CA-------------GCA------------------------------------GCAACAGCATCATCATCACCAGCAACAT---CAGCAGC--------------------TTC------------------A---ACA---GCAG----CAACT----GCAA--------------CA-------------C--GC------C---GC------T-GCCTTGCA
droFic1 scf7180000454106:1687633-1687808 - CCGGCCAG------------------------------------------------------C----------------------------------------------ACTTCCAGCACC-------ACACGAAGATCGAGCACGCGGACTCCA-------CCACGACG-----------------------------GCGGCCCAGCAGCAGCAGCA---------------------------------------------------------------------G---------------------C------------------AA---CA---ACAGCA------GCAGCAGC------AGCAA---------CAGC-AGCAGCAGCAGCAG---------------CA---------------------ACACCAGCA---------GCAGCAACACCAGCAGC------A----GCAGC----A---------AC----------------------------AGCT----GCAG--------------CA-------------C-----------------------GCTGCTGCA
droEle1 scf7180000491028:3396755-3396951 + CAGC--TG------------------------------------------------------C----------------------------------------------------AGCAG-------------------------------------------------------------------------------------------------------------------CAGCAGCAATTGCTGCAGTTGTCCATCCAGCAGGCGGCGCACCATCATCAGCAGGAG---CAGCATCG---TCAGC------------------AA---CA---ACAGCA------GCAGCAGC------AGCAA----------------CAGCAGCAGCA---------------GCA---ACAACAACACC---------A---------------GCAGCAG---CAGCAGC-------ACCACCAGC---A----------GC----------------------------AGCA----ACAA--------------CAGGG-CCATCCACAGGCACC---------GC------CGCCACAGCA
droRho1 scf7180000779410:273721-273911 - CATC--AG------------------------------------------------------CA--------GC--------------------------------------AGC-------------------------------------------------------------------------------------------------------AACAGCAGTTACAGCAGCAGCAGCAACTGCTGCAGTTGTCCATCCAGCAGGCGGCGCACCATCATCAACAGGAG---CA------------------------------------------------------GCAC---C------G---C---------CAGC-AACAGCAGCAGCAACAACACCAGCAGCAGCA---------------------ACAGCAGCAGCATCA------------------------CCA-----------------------AC----------------------------AGCA----ACAG--------------CAGGG-TCATCCCCAGGCCCC---------GC------CTCCGCAGCA
droBia1 scf7180000302113:637745-637915 + AAC---AG------------------------------------------------------C----------------------------------------------AACAGCAGCAGCA----------------------TGTG-------GCCCATGGGAAGAAGG-----------------------------CAGCCAGAAAACACCAGCA------------------------------------------------------------------------------------------ACACCTACAGCA---------G---C------AACAGCAGCAGCAG---C------AGCAG----------------CAGCAGCAGCA---------------GCA---------------------ACAGCAACAGCAGCA------------ACAGCAGC-------------AACAGC-A---------GC----------------------------AGCA----ACAA--------------CA-------------GACCAGTGCGCC---TA------T-GTACAATA
droTak1 scf7180000415272:246607-246784 + CAGC--AA------------------------------------------------------CG----------------------------------------------CCAGCAGCAA-------------------------------------------------------------------------------------------------------------------CAACAGCAGCTTCTACAACAATTTACGCTGCAGGCGGCA-GCCGC--------------------------------------------------------------ACA------GCAGCAACAACAACAACAA-------------------CAGCAGCA---------------GCA---G------CA---------------------ACACCAGCAGCAG---CAGCAGC--------------------AAC------------------A---A---CAACAGCAAGCAACAAGTAGCAAT-GCCTTAACCAAG------------ACATTACCC---------GTGGCTCT--------TC
droEug1 scf7180000408973:233176-233346 + TGCC--AG------------------------------------------------------CA----------------------------------------------------GC----------------------------CGGACTGCATTCCGCAGGAGTTCCT-----------------------------C-ATCCAGCA---GCAGCAACA------------------------------------------------------------------G---CAACTCCAGCAGC------------------------AGCAGCA---ACAGCA------GCAG---C------TACAA---------CTG-CAACAACAACAACA---------------ACA---------ACAGC---------A---------------GCAGCAGCAGCAGCAGC--------------------A------------------------ACAACAA-------CAGCA----GCAG--------------CA-------------GATGGT---------GT----CAC-CTGCTCCG
dm3 chr2L:11797240-11797414 - AACAGCAG------------------------------------------------------T-------------------------------------------------TGCAGCAG-------------------------------------------------------------------------------------------------------------------CAGCAACAACTGCTTCAGTTGTCCATCCAACAGGCGGCTCACCATCATCAGCAGGAG---CAGCATC---------------------------------------------------------------GTCAACAGCAGCAACAG-CAACACCAGCAGCA---------------ACA---------------------ACAGCAACAGCATCA------------------------CCA-----------------------GC----------------------------AGCA----ACAG--------------CAGGG-TCATCCACAGGCCCC---------GC------CACCGCAGCA
droSim2 2r:20715952-20716121 + CAATCCCG------------------------------------------------------C----------------------------------------------GGCAGGAGCACCCC----------------------CTG-------CCCCCCAATGCCAAAC---------------------------------------------------------------------------------GCTCCACAGCCCACAGCACGCCTCCCAGCAGC---------------------------------------------------------AGCA------GCAGCAGC------AACAACAGC-------------AGCAGCAGCAA---------------CACCA------GCAGCAGCAGCAACAGCAGCAGCATCC------------------------CCA-----------------------GC----------------------------AGCA----AC-----------------GC-----GGCCTCAAG---------------------CGCTCCGGCA
droSec2 scaffold_3:7186381-7186555 - AACAGCAG------------------------------------------------------T-------------------------------------------------TGCAGCAG-------------------------------------------------------------------------------------------------------------------CAGCAACAACTGCTTCAGTTGTCCATCCAACAGGCGGCTCACCATCATCAGCAGGAG---CAGCATC---------------------------------------------------------------GCCAACAGCAGCAACAG-CAACACCAGCAGCA---------------ACA---------------------ACAGCAGCAGCATCA------------------------CCA-----------------------GC----------------------------AGCA----ACAG--------------CAGGG-TCATCCACAGGCCCC---------GC------CACCGCAGCA
droYak3 X:19163346-19163529 + CAGTCGTG---------------------------------------------------AGCCA-CGCAGCAGCTCCCCTCCCCTGCAG-CA--GCAGCAA-------------------T------AT----------------------------------------------------------------------------CA------GCAGCA---------------------------------G---------------------CAGCAGCAGCAGCAG------------CAGC------------------------AG---CAACAGCAGCA------GCAG---C------A---G---------CAG-CAACAGCAACAGCA---------------GCA---------------------ACAGCAGCTGCAACA------------------------GCA-----------------------ACAGCAACAGCTGCAACAGCAA-------CAGCT----GCAG--------------CAT----------CAGCAGCA---------G---CACT--------TC
droEre2 scaffold_4784:3586568-3586751 + AGCATCAG---------------------------------------------------CAGCA--------GC-------------AG-CA--GCAGCAT-------------------C------AA----------------------------------------------------------------------------CAGCA---GCAGCAGCA------------------------------------------------------------------G---CAACAGCAGCAAC------------------------AG---CAGCAACAGCA------GCAGCAGC------AACAA---------CAGC-AACAGCAGCAGCAGCAACAGCAGCAGCATCA---------------------ACAGCA-----------------------------------------------------------AC------AGCAGCAACAGCAA-------CAGCA----GCAGCAGTTGCAGCCACA------------ACAGCAGCT---------GC------AGCCGCAACA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
CAGTCCAG------------------------------------------------------T----------------------------------------------GCCAGCAGCAACCACTCCGACTCCGAGGAGGAGTTCGCTGAGT------------------------------------------------CAGCCAACCAG-AGCAACA---------------------------------------------------------ACA------------------------------AC------------------AA---CA---GCAGCA------GCAGCAGC------AACAATTGC-------------AGCAACAGCAA---------------CAACA------GCAAC---------A---------------GCAACAACAACAGCAGCAACACCA-----------------------AC----------------------------AGCA----ATAA--------------CAAAGCTCTGCCTCTGGCGCC---------GC------T-CTCCTACASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....................................................................................................................................................................................................................GCAACA---------------------------------------------------------ACA------------------------------AC------------------AA---CA---GCAGC.....................................................................................................................................................................................................................................................................20200.204400000
......................................................................................................................................................................................................................................................................................A------------------------------AC------------------AA---CA---GCAGCA------GCAGCAGC------AAC.............................................................................................................................................................................................................................................24200.051000010
..........................................................................................................................................................................................................................A---------------------------------------------------------ACA------------------------------AC------------------AA---CA---GCAGCA------GCAGCAGC------A...............................................................................................................................................................................................................................................25200.051100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................AAC---------A---------------GCAACAACAACAGCAGC......................................................................................................................................21200.051000010
.....................................................................................................................................................................................................................GCAACA---------------------------------------------------------ACA------------------------------AC------------------AA---CA---GCAGCA------GCAGCAGC------................................................................................................................................................................................................................................................29200.051100000
........................................................................................................................................................................................................................ACA---------------------------------------------------------ACA------------------------------AC------------------AA---CA---GCAGCA------GCA...........................................................................................................................................................................................................................................................21200.051100000
.....................................................................................................................................................................................................................GCAACA---------------------------------------------------------ACA------------------------------AC------------------AA---CA---GCAGCA------GC............................................................................................................................................................................................................................................................23200.051100000
.....................................................................................................................................................................................................................................................................................................................AC------------------AA---CA---GCAGCA------GCAGCAGC------AAC.............................................................................................................................................................................................................................................23200.051000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAGCAGCAACAC.................................................................................................................................20200.051000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAC---------A---------------GCAACAACAACAGCAG.......................................................................................................................................22200.051100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AC---------A---------------GCAACAACAACAGCAGC......................................................................................................................................20200.051000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------GCAACAACAACAGCAGCA.....................................................................................................................................19200.051100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................CAACA------GCAAC---------A---------------GCAACAACAACAGC.........................................................................................................................................25200.051000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................C---------A---------------GCAACAACAACAGCAGC......................................................................................................................................19200.051100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAC---------A---------------GCAACAACAACAGCA........................................................................................................................................21200.051000010
droVir3
CATTCCAC---------------------------------------------------CACCAGCACAGCTACAC-------CTGCAGC-AGC-TATCAATGTGCAGCAACAGCAGCAGCAA----------------------------------------------------------------------------------------------------------------------CAACAGC------------------------------------------------AG---CA------TC------------------AT---CA---ACAGCA------GCAGCAGC------AACAG---------CA----GCAGCAGCAGCAACA------------ACA---------ACAGC---------A---------GCAACAACAACAG---CAGCAAC---AACA-----------------------AC----------------------------AACA----ACAA--------------CAA----------CAACTGAA-----TGTAG---CTCA--------GCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................................................................................ATCAATGTGCAGCAACAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002002000000000000000000000000000000000000000000000000000000000000
......................................................................................................................AGCAA----------------------------------------------------------------------------------------------------------------------CAACAGC------------------------------------------------AG---CA------TC------------------AT---CA---AC........................................................................................................................................................................................................................................................................2411.001000000000000000000000000000010000000000000000000000000000000000
........................................................................................GC-AGC-TATCAATGTGCAGCAACAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................GC------------------------------------------------AG---CA------TC------------------AT---CA---ACAGCA------GCA...........................................................................................................................................................................................................................................................2120.501000000000000000000000000000000000000000100000000000000000000000
......................................................................................................................AGCAA----------------------------------------------------------------------------------------------------------------------CAACAGC------------------------------------------------AG---CA------TC------------------A...................................................................................................................................................................................................................................................................................1960.332000000000000000010000010000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................C------------------------------------------------AG---CA------TC------------------AT---CA---ACAGCA------GCAG..........................................................................................................................................................................................................................................................2130.331000000000000001000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAACA------------ACA---------ACAGC---------A---------.............................................................................................................................................................21200.153002000000000000000000000000000001000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................T---CA---ACAGCA------GCAGCAGC------AACAG---------CA----............................................................................................................................................................................................................................2470.141001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................AGCAGCAA----------------------------------------------------------------------------------------------------------------------CAACAGC------------------------------------------------AG---CA------T.......................................................................................................................................................................................................................................................................................................2080.131000000000000000000000000000001000000000000000000000000000000000
..........................................................................................................AGCAACAGCAGCAGCAA----------------------------------------------------------------------------------------------------------------------CA..........................................................................................................................................................................................................................................................................................................................................................................19200.102002000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAACA------------ACA---------ACAGC---------A---------GC...........................................................................................................................................................23200.102000000000000000000000000000000000000200000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................A---------ACAGC---------A---------GCAACAACAACAG---CA...........................................................................................................................................22200.102001000000000001000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................CA------TC------------------AT---CA---ACAGCA------GCAGCA........................................................................................................................................................................................................................................................20160.061000000000000000000000000000000000000010000000000000000000000000
......................................................................................................................................................................................................................................................................................................................C------------------AT---CA---ACAGCA------GCAGCAGC------AAC.............................................................................................................................................................................................................................................22170.061000000000000000000000000000001000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................CA---------ACAGC---------A---------GCAACAACAACAG---C............................................................................................................................................22200.051000000000000000001000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................A----GCAGCAGCAGCAACA------------ACA---------ACAGC---------A---------.............................................................................................................................................................25200.051000000000000000000100000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................A------------ACA---------ACAGC---------A---------GCAACAACAACAG---CA...........................................................................................................................................25200.051000000000000000000000000000000001000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................AT---CA---ACAGCA------GCAGCAGC------AAC.............................................................................................................................................................................................................................................21200.051000100000000000000000000000000000000000000000000000000000000000
.........................................................................................................CAGCAACAGCAGCAGCAA----------------------------------------------------------------------------------------------------------------------CAACAGC------------------------------------------------A....................................................................................................................................................................................................................................................................................................................26200.051000000000000000100000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................CA---ACAGCA------GCAGCAGC------AACAG---------CA----GCAGCA......................................................................................................................................................................................................................29200.051000000000000000000000000000000000001000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................CAGC------AACAG---------CA----GCAGCAGCAGCAAC..............................................................................................................................................................................................................25200.051000000000000000000000000000000000000100000000000000000000000000
........................................................................................................GCAGCAACAGCAGCAGCAA----------------------------------------------------------------------------------------------------------------------CA..........................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000000000100000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................CAACA------------ACA---------ACAGC---------A---------GCAAC........................................................................................................................................................19200.051000000000000000000000000000000000000000000000000000000000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAG---CAGCAAC---AACA-----------------------AC----------------------------AAC.......................................................................28200.051000000000000000001000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................GCAGC------AACAG---------CA----GCAGCAGCAGCAACA------------.................................................................................................................................................................................................27200.051001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................AT---CA---ACAGCA------GCAGCAGC------AACA............................................................................................................................................................................................................................................22200.051000000000000000000000000000000000000010000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................CA---ACAGCA------GCAGCAGC------AACAG---------CA----G...........................................................................................................................................................................................................................24200.051001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................CA---------ACAGC---------A---------GCAACAACAACAG---.............................................................................................................................................21200.051000000000000000000000000000010000000000000000000000000000000000
............................................................................................................CAACAGCAGCAGCAA----------------------------------------------------------------------------------------------------------------------CAACAGC------------------------------------------------A....................................................................................................................................................................................................................................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................GCAACAGCAGCAGCAA----------------------------------------------------------------------------------------------------------------------CAACAGC------------------------------------------------.....................................................................................................................................................................................................................................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAG---CAGCAAC---A..................................................................................................................................19200.051000000000000000000000000000000000000000000000000000000000001000
.....................................................................................................................................................................................................................................................................................................................................................................GC------AACAG---------CA----GCAGCAGCAGCAA...............................................................................................................................................................................................................22200.051000000000000010000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG---CAGCAAC---AACA-----------------------AC----------------------------AACA----..................................................................20200.051000000000000000000000000000000000000000100000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CAGC---------A---------GCAACAACAACAG---CAGC.........................................................................................................................................22200.051000000000000000000000000000000000001000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................AGC------AACAG---------CA----GCAGCAGCA...................................................................................................................................................................................................................19200.051000100000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................CAGC------AACAG---------CA----GCAGCAGCAGC.................................................................................................................................................................................................................22200.051000000000000000000000000000001000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAG---CAGCAAC---AACA-----------------------AC----------------------------AACA----..................................................................25200.051001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................A---ACAGCA------GCAGCAGC------AACA............................................................................................................................................................................................................................................19200.051000000000000000000000000000000000000000000000000000000000000100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAG---CAGCAAC---AACA-----------------------AC----------------------------AACA----..................................................................28200.051000000000000000010000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................C---------A---------GCAACAACAACAG---CAGCAA.......................................................................................................................................21200.051000000000001000000000000000000000000000000000000000000000000000
droGri2
GCCC--AG------------------------------------------------------CT--------CCAG-------CAACAAC----------------------AGCATCAG----------------------------------------------------------------------------------------------CAACA---------------------ACAACAGCAG---------------------------------------------CAG---CAACAACAACAACAACAGCA------------------------------GCAA---C------A---A---------CAGC-AGCAGCAGCAGCA---------------ACA---A------CAAC---AGCAGCA---------------GCAACAG---CAGCAGC-------AGCAACAAC---A----------AC----------------------------AGCA----GCAA--------------CACAA-TCAACAACAACAACAGC---C---GC--------CCGCGCCGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC---A----------AC----------------------------AGCA----GCAA--------------CACAA-TCA.......................................2211.00110
.................................................................................................................................................................................................................................................................................................................................................................................A---------CAGC-AGCAGCAGCAGCA---------------ACA---...........................................................................................................................................................................................21200.15330
........................................................................................................................................................................................................................ACA---------------------ACAACAGCAG---------------------------------------------CAG---CAACAACAACA.....................................................................................................................................................................................................................................................................................................27200.10220
...........................................................................................................................................................................................................................................................................................................................ACAGCA------------------------------GCAA---C------A---A---------CAGC-AGCAGCA......................................................................................................................................................................................................................24200.10220
...........................................................................................................................................................................................................................................................................................................................ACAGCA------------------------------GCAA---C------A---A---------CAGC-AGC..........................................................................................................................................................................................................................20200.05110
........................................................................................................................................................................................................................ACA---------------------ACAACAGCAG---------------------------------------------CAG---CAACA...........................................................................................................................................................................................................................................................................................................21200.05110
.....................................................................................................................................................................................................................................................................................................................ACAACAACAGCA------------------------------GCAA---C------A---A---------CAGC-AGCAG........................................................................................................................................................................................................................28200.05110
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC-------AGCAACAAC---A----------AC----------------------------AGCA----GCAA--------------CA..............................................24200.05110
..................................................................................................................................................................................................................................................................................................................ACAACAACAACAGCA------------------------------GCA...........................................................................................................................................................................................................................................................18200.05110
droWil2
AAGCACAG------------------------------------------------------C---------GCAG-------C-------------------------AACAGCAACAGCAG----------------------------------------------------------------------------------------------------------------GAACAGCAACGTCAGCAATTATTGTTTCAG------------------------------------------CGACAGCAACATCAACAACAGCAA---CA---GCAGCA------GGAACAGC------AAGAACAGC-------------AAGAACAGCAA---------------CAACA------ACAAC---------A---------------ACAACAA---CAACAGC--------------------AACACTATCAAC----------------------------AGCA----AACA--------------CACAG-CAACACTTATGAAAT---------GT------TGTACTCCCASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGC--------------------AACACTATCAAC----------------------------AGCA----AACA--------------C...............................................2711.00100010
.......................................................................................................................GCAG----------------------------------------------------------------------------------------------------------------GAACAGCAACGTCAG...................................................................................................................................................................................................................................................................................................................................................................1911.00100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTATGAAAT---------GT------TGTACTCCC.2211.00100100
.............................................................................................................................................................................................................................................................................................................................ATCAACAACAGCAA---CA---GCAGCA------GGA...........................................................................................................................................................................................................................................................2511.00100010
...................................................................................................................AACAGCAG----------------------------------------------------------------------------------------------------------------GAACAGCAACGTCAGC..................................................................................................................................................................................................................................................................................................................................................................2411.00100010
...................................................................................................................AACAGCAG----------------------------------------------------------------------------------------------------------------GAACAGCAAC........................................................................................................................................................................................................................................................................................................................................................................1811.00100010
...................................................................................................................................................................................................................................................................................................................................................GCAGCA------GGAACAGC------AAGAACAG........................................................................................................................................................................................................................................2211.00100010
......................................................................................................................................................................................................................................................................................................................................AGCAA---CA---GCAGCA------GGAACA........................................................................................................................................................................................................................................................1940.25101000
..........................................................................................................................................................................................................................................................................................................................AACATCAACAACAGCAA---CA---GC........................................................................................................................................................................................................................................................................2160.17100010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AC---------A---------------ACAACAA---CAACAGC--------------------AAC...............................................................................................................20200.10200020
.....................................................................................................................................................................................................................................................................................................................ACAGCAACATCAACAACAGCA...................................................................................................................................................................................................................................................................................21100.10100001
..........................................................................AG-------C-------------------------AACAGCAACAGCAG----------------------------------------------------------------------------------------------------------------G.................................................................................................................................................................................................................................................................................................................................................................................18200.05100010
...........................................................................................................................................................................................................................................................................................................................ACATCAACAACAGCAA---CA---..........................................................................................................................................................................................................................................................................18200.05100010
dp5
AGGCACAG------------------------------------------------------C----------------------------------------------AACAGCAGCAGCAA----------------------------------------------------------------------------------------------------------------------CAGCAGGCTCAGCAGCAGGCTC---------------------------------AG---CAACAGCAACAACAACAGCA------------------------------GCAA---C------A---A---------CAGC-AACAACAACAGCA---------------ACA---A------CAGC---AGCAACA---------------GCAGCAG---CAGCAGC-------AGCAACAAC---A----------AC----------------------------AGCA----GCAA--------------CAGAA-GCTAAAGCAGGCTCA---------GG------CG--TCGTCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC-------AGCAACAAC---A----------AC----------------------------AGCA----GCAA--------------CAGAA-G.........................................2812.0020000000200
...............................................................................................................................................................................................................................................................GCAGGCTC---------------------------------AG---CAACAGCAACAACAAC................................................................................................................................................................................................................................................................................................2611.0010100000000
..............................................................................................................................................................................................................................................................AGCAGGCTC---------------------------------AG---CAACAGCAAC......................................................................................................................................................................................................................................................................................................2111.0010100000000
...............................................................................................................................................................................................................................................................GCAGGCTC---------------------------------AG---CAACAGCAACA.....................................................................................................................................................................................................................................................................................................2111.0010100000000
.................................................................................................................................................................................................................................................CAGCAGGCTCAGCAGCAGGCTC---------------------------------AG---CAAC............................................................................................................................................................................................................................................................................................................2811.0010010000000
...............................................................................................................................................................................................................................................................GCAGGCTC---------------------------------AG---CAACAGCAACAAC...................................................................................................................................................................................................................................................................................................2311.0010100000000
.................................................................................................................................................................................................................................................................AGGCTC---------------------------------AG---CAACAGCAACAA....................................................................................................................................................................................................................................................................................................2011.0010100000000
......................................................................................................................AGCAA----------------------------------------------------------------------------------------------------------------------CAGCAGGCTCAGCAG.............................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...............................................................................................................................................................................................................................................................GCAGGCTC---------------------------------AG---CAACAGCAACAACA..................................................................................................................................................................................................................................................................................................2411.0010100000000
........................................................................................................................CAA----------------------------------------------------------------------------------------------------------------------CAGCAGGCTCAGCAGCA...........................................................................................................................................................................................................................................................................................................................................................2020.5010000100000
........................................................................................................................CAA----------------------------------------------------------------------------------------------------------------------CAGCAGGCTCAGCAGCAGG.........................................................................................................................................................................................................................................................................................................................................................2220.5010100000000
......AG------------------------------------------------------C----------------------------------------------AACAGCAGCAGCAA----------------------------------------------------------------------------------------------------------------------CAGCAGGC....................................................................................................................................................................................................................................................................................................................................................................2520.5010010000000
.....................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCA---------------ACA---A------CAGC---AGCAACA---------------GCAG...................................................................................................................................................2760.5030000000300
................................................................................................................................................................................................................................................................................................................................................................CAA---C------A---A---------CAGC-AACAACAACA...................................................................................................................................................................................................................20200.3570700000000
...CACAG------------------------------------------------------C----------------------------------------------AACAGCAGCAGCAA----------------------------------------------------------------------------------------------------------------------CA..........................................................................................................................................................................................................................................................................................................................................................................2290.1110010000000
.............................................................................................................................................................................................................................................................................................................CAACAGCAACAACAACAGCA------------------------------GCAA---C------................................................................................................................................................................................................................................................25100.1010010000000
...................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCA---------------ACA---A------CAGC---AGCAAC.......................................................................................................................................................................24110.0910010000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGC-------AGCAACAAC---A----------AC----------------------------AGCA----GCAA--------------C...............................................28110.0910001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................ACA---A------CAGC---AGCAACA---------------GCAGCAG---CAG..........................................................................................................................................25110.0910000100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGC-------AGCAACAAC---A----------AC----------------------------AGCA----GCAA--------------C...............................................26120.0810001000000
.............................................................................................................................................................................................................................................................................................................................................................................................GC-AACAACAACAGCA---------------ACA---A------CAGC---AGC..........................................................................................................................................................................26130.0810010000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-------AGCAACAAC---A----------AC----------------------------AGCA----GCAA--------------CAG.............................................24130.0810100000000
..................................................................................................................................................................................................................................................................................................................GCAACAACAACAGCA------------------------------GCAA---C------A---A---------C.................................................................................................................................................................................................................................23160.0610010000000
................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAGCA---------------ACA---A------CAGC---AGCA.........................................................................................................................................................................25160.0610100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GC---AGCAACA---------------GCAGCAG---CAGCAGC-------AGCAAC.........................................................................................................................29190.0510010000000
.....................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCA---------------ACA---A------CAGC---AGC..........................................................................................................................................................................19200.0510100000000
......................................................................................................................................................................................................................................................................................................................CAACAACAGCA------------------------------GCAA---C------A---A---------CA................................................................................................................................................................................................................................20200.0510000010000
......AG------------------------------------------------------C----------------------------------------------AACAGCAGCAGCAA----------------------------------------------------------------------------------------------------------------------CAGCA.......................................................................................................................................................................................................................................................................................................................................................................22200.0510000000001
..................................................................................................................................................................................................................................................................................................................................................................................................................................A------CAGC---AGCAACA---------------GCAGCA.................................................................................................................................................18200.0510100000000
.......................................................................................................................................................................................................................................................................................................................AACAACAGCA------------------------------GCAA---C------A---A---------CAGC-.............................................................................................................................................................................................................................21200.0510000100000
......................................................................................................................................................................................................................................................................................................................CAACAACAGCA------------------------------GCAA---C------A---A---------CAGC-A............................................................................................................................................................................................................................23200.0510100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC-------AGCAACAAC---A----------AC----------------------------AGCA----GC................................................................20200.0510100000000
............................................................................................................................................................................................................................................................................................................................................................................................................A---------------ACA---A------CAGC---AGCAACA---------------GCAGCA.................................................................................................................................................22200.0510100000000
.....................................................................................................................................................................................................................................................................................................................ACAACAACAGCA------------------------------GCAA---C------A---A---------CA................................................................................................................................................................................................................................21200.0510100000000
................................................................................................................................................................................................................................................................................................................CAGCAACAACAACAGCA------------------------------GCAA---C------A---A---------A.................................................................................................................................................................................................................................25200.0510000001000
..................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAGCA---------------ACA---A------CAGC---AGC..........................................................................................................................................................................22200.0510010000000
.......G------------------------------------------------------C----------------------------------------------AACAGCAGCAGCAA----------------------------------------------------------------------------------------------------------------------CAGCA.......................................................................................................................................................................................................................................................................................................................................................................21200.0510100000000
droPer2
CAGTGCAATGTAACCCAGACACCGACCAAGCCTCGCACCCAACTGGAAGCTCTGGTCACCA-----------------------AGC----------------------A-------------------------------------------------------------------------------------------------------ACAGCAGCA------------------------------------------------------------------A---CAGCAGCAACA------GC------------------AG---CA---ACAACA------GCAGCAAC------AACAG---------CA----GCAACAACAGCA---------------GCA---A------CA---------------------ACAGCAGCAACAA---CAGCAGC--------------------AAC------------------A---A---CAGCAG----CAG----------------------------------------------------------------CAGCAACASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................GCACCCAACTGGAAGCTCTGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002200000
............................................................................................................................................................................................................................................................................................................ACA------GC------------------AG---CA---ACAACA------GCAGC.........................................................................................................................................................................................................................................................20200.051001000
..........................................................................................................................................................................................................................................................................................................CAACA------GC------------------AG---CA---ACAACA------GC............................................................................................................................................................................................................................................................19200.051010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC--------------------AAC------------------A---A---CAGCAG----CAG----------------------------------------------------------------CAGCAACA24200.051001000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--------------------AAC------------------A---A---CAGCAG----CAG----------------------------------------------------------------CAGCAA..21200.051001000
...........................................................................................................................................................................................................................GCA------------------------------------------------------------------A---CAGCAGCAACA------GC------------------AG---CA---..........................................................................................................................................................................................................................................................................21200.051000010
..............................................................................................................................................................................................................................................................................................................................................................................ACAG---------CA----GCAACAACAGCA---------------GC...............................................................................................................................................................................................20200.051001000
......................................................................................................................................................................................................................................................................................................................................................ACA------GCAGCAAC------AACAG---------CA----GC..........................................................................................................................................................................................................................20200.051001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC--------------------AAC------------------A---A---CAGCAG----CAG----------------------------------------------------------------CAGCA...21200.051001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC--------------------AAC------------------A---A---CAGCAG----CAG----------------------------------------------------------------CAGC....20200.051001000
droAna3
AATGGAAG---------------------------------------------------CAGCT--------AT-----------------------------------------------------------------------------------------------ACGCTCCACTTCAGTGCAGGTCGGTGCTCCGCCGCCCACAA---ACAACAACA------------------------------------------------------------------A---CAACAACAACA---------------GTAGC------AA---CA---ACAACA------GCAG---C------AGTAA---------CA-------------GTA---------------------------GCAAC---------AGCAACA---------ACAACAG---CAACAAC---AGCA----GCAGC----A---------AC---------A---ACA--------------------------------------------------------------------------------ACAACASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................................................................................................................................................................................................................................................................................................................................................GCAG---C------AGTAA---------CA-------------GTA---------------------------GCAAC---------AGC....................................................................................................................................................................2312.002020000
.......................................................................................................................................................................................................................AACAACA------------------------------------------------------------------A---CAACAACAACA---------------GTAGC------AA---C..............................................................................................................................................................................................................................................................................2711.001010000
................................................................................................................................................................................................................................................................................................................................................................................AA---------CA-------------GTA---------------------------GCAAC---------AGCAACA---------AC.....................................................................................................................................................2111.001010000
...............................................................................................................................................................................CACTTCAGTGCAGGTCGGTGCTCCGC....................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
.................................................................................................................................................................................CTTCAGTGCAGGTCGGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
......................................................................................................................................................................................................................................................................................................................................................ACA------GCAG---C------AGTAA---------CA-------------GTA---------------------------GCAAC---------.......................................................................................................................................................................2311.001010000
..................................................................................................................................................................................TTCAGTGCAGGTCGGTGCT........................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
..................................................................................................................................................................................................................................................................................................................................C------AA---CA---ACAACA------GCAG---C------AGTAA---------C.................................................................................................................................................................................................................................2211.001010000
................................................................................................................................................................................................................................................................................................A---CAACAACAACA---------------GTAGC------AA---CA---ACAAC.....................................................................................................................................................................................................................................................................2620.501010000
......................................................................................................................................................................................................................................................................................................ACAACAACA---------------GTAGC------AA---CA---ACAAC.....................................................................................................................................................................................................................................................................2320.501010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---CAACAAC---AGCA----GCAGC----A---------AC---------A---ACA--------------------------------------------------------------------------------AC....2630.331010000
............................................................................................................................................................................................................................CA------------------------------------------------------------------A---CAACAACAACA---------------GTAGC------AA---...............................................................................................................................................................................................................................................................................2140.251001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------ACAACAG---CAACAAC---AGCA----GCAGC----..................................................................................................................2480.131010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................C---------AGCAACA---------ACAACAG---CAACAA.......................................................................................................................................21100.101000100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAG---CAACAAC---AGCA----GCAGC----A---------AC---------A---.........................................................................................25120.081000001
.............................................................................................................................................................................................................................A------------------------------------------------------------------A---CAACAACAACA---------------GTAGC------....................................................................................................................................................................................................................................................................................18140.071010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAG---CAACAAC---AGCA----GCAGC----A---------........................................................................................................22200.051000001
droBip1
CAGC--AG------------------------------------------------------GT--------GCAG-------CAGCAGC-------------------------A----------------------------GGTC-------G-----------------------------------------CCACCGCCCACCA---GCAGCAACA------------------------------------------------------------------C---CAACAGCAGCAGCA---GC------------------AA---CA---ACAACA------GCAGCAAC------AACAA---------CA----GCAACAGCAGCA---------------GCA------------------------------ACAACACCAGCAGCAA---CAGCAGC--------------------AGC------------------ACCAACAAC----------AAC-------AG--------------CA-------------CGCCGC-----CGTAGC--CGCC--------GCSizeHit CountTotal NormTotal
No Reads
droKik1
CGGCC-AG------------------------------------------------------C----------------------------------------------ACTTTCCACACC-------ACACGAAGATCGAGCATGCGGACTCCA-------CCACAACG-----------------------------GCCGCCCAGCA---GCAGCAACA------------------------------------------------------------------G---CAGCAGCAGCA------AC------------------AA---CA---GCAGCA------GCAACAGC------AACAA---------CA-------------GCA------------------------------------GCAACAGCATCATCATCACCAGCAACAT---CAGCAGC--------------------TTC------------------A---ACA---GCAG----CAACT----GCAA--------------CA-------------C--GC------C---GC------T-GCCTTGCASizeHit CountTotal NormTotal
No Reads
droFic1
CCGGCCAG------------------------------------------------------C----------------------------------------------ACTTCCAGCACC-------ACACGAAGATCGAGCACGCGGACTCCA-------CCACGACG-----------------------------GCGGCCCAGCAGCAGCAGCA---------------------------------------------------------------------G---------------------C------------------AA---CA---ACAGCA------GCAGCAGC------AGCAA---------CAGC-AGCAGCAGCAGCAG---------------CA---------------------ACACCAGCA---------GCAGCAACACCAGCAGC------A----GCAGC----A---------AC----------------------------AGCT----GCAG--------------CA-------------C-----------------------GCTGCTGCASizeHit CountTotal NormTotal
No Reads
droEle1
CAGC--TG------------------------------------------------------C----------------------------------------------------AGCAG-------------------------------------------------------------------------------------------------------------------CAGCAGCAATTGCTGCAGTTGTCCATCCAGCAGGCGGCGCACCATCATCAGCAGGAG---CAGCATCG---TCAGC------------------AA---CA---ACAGCA------GCAGCAGC------AGCAA----------------CAGCAGCAGCA---------------GCA---ACAACAACACC---------A---------------GCAGCAG---CAGCAGC-------ACCACCAGC---A----------GC----------------------------AGCA----ACAA--------------CAGGG-CCATCCACAGGCACC---------GC------CGCCACAGCASizeHit CountTotal NormTotal
No Reads
droRho1
CATC--AG------------------------------------------------------CA--------GC--------------------------------------AGC-------------------------------------------------------------------------------------------------------AACAGCAGTTACAGCAGCAGCAGCAACTGCTGCAGTTGTCCATCCAGCAGGCGGCGCACCATCATCAACAGGAG---CA------------------------------------------------------GCAC---C------G---C---------CAGC-AACAGCAGCAGCAACAACACCAGCAGCAGCA---------------------ACAGCAGCAGCATCA------------------------CCA-----------------------AC----------------------------AGCA----ACAG--------------CAGGG-TCATCCCCAGGCCCC---------GC------CTCCGCAGCASizeHit CountTotal NormTotal
No Reads
droBia1
AAC---AG------------------------------------------------------C----------------------------------------------AACAGCAGCAGCA----------------------TGTG-------GCCCATGGGAAGAAGG-----------------------------CAGCCAGAAAACACCAGCA------------------------------------------------------------------------------------------ACACCTACAGCA---------G---C------AACAGCAGCAGCAG---C------AGCAG----------------CAGCAGCAGCA---------------GCA---------------------ACAGCAACAGCAGCA------------ACAGCAGC-------------AACAGC-A---------GC----------------------------AGCA----ACAA--------------CA-------------GACCAGTGCGCC---TA------T-GTACAATASizeHit CountTotal NormTotal
No Reads
droTak1
CAGC--AA------------------------------------------------------CG----------------------------------------------CCAGCAGCAA-------------------------------------------------------------------------------------------------------------------CAACAGCAGCTTCTACAACAATTTACGCTGCAGGCGGCA-GCCGC--------------------------------------------------------------ACA------GCAGCAACAACAACAACAA-------------------CAGCAGCA---------------GCA---G------CA---------------------ACACCAGCAGCAG---CAGCAGC--------------------AAC------------------A---A---CAACAGCAAGCAACAAGTAGCAAT-GCCTTAACCAAG------------ACATTACCC---------GTGGCTCT--------TCSizeHit CountTotal NormTotal
No Reads
droEug1
TGCC--AG------------------------------------------------------CA----------------------------------------------------GC----------------------------CGGACTGCATTCCGCAGGAGTTCCT-----------------------------C-ATCCAGCA---GCAGCAACA------------------------------------------------------------------G---CAACTCCAGCAGC------------------------AGCAGCA---ACAGCA------GCAG---C------TACAA---------CTG-CAACAACAACAACA---------------ACA---------ACAGC---------A---------------GCAGCAGCAGCAGCAGC--------------------A------------------------ACAACAA-------CAGCA----GCAG--------------CA-------------GATGGT---------GT----CAC-CTGCTCCGSizeHit CountTotal NormTotal
No Reads
dm3
AACAGCAG------------------------------------------------------T-------------------------------------------------TGCAGCAG-------------------------------------------------------------------------------------------------------------------CAGCAACAACTGCTTCAGTTGTCCATCCAACAGGCGGCTCACCATCATCAGCAGGAG---CAGCATC---------------------------------------------------------------GTCAACAGCAGCAACAG-CAACACCAGCAGCA---------------ACA---------------------ACAGCAACAGCATCA------------------------CCA-----------------------GC----------------------------AGCA----ACAG--------------CAGGG-TCATCCACAGGCCCC---------GC------CACCGCAGCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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..........................................................................................................................................................................................................................................................................................................................................................................................ACAG-CAACACCAGCAGCA---------------.................................................................................................................................................................................................18110.1820000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.ACAGCAG------------------------------------------------------T-------------------------------------------------TGCAGCAG-------------------------------------------------------------------------------------------------------------------CA................................................................................................................................................................................................................................................................................................................................................................................1860.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
AACAGCAG------------------------------------------------------T-------------------------------------------------TGCAGCAG-------------------------------------------------------------------------------------------------------------------C.................................................................................................................................................................................................................................................................................................................................................................................1870.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................AACAG-CAACACCAGCAGC.................................................................................................................................................................................................................1880.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................AACAG-CAACACCAGCAGCA---------------.................................................................................................................................................................................................1980.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................CACCAGCAGCA---------------ACA---------------------ACAG.....................................................................................................................................................................1890.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................CAACAG-CAACACCAGCA...................................................................................................................................................................................................................17180.1120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002
...................................................................................................................................................................................................................................................................................................................................................................................................ACCAGCAGCA---------------ACA---------------------ACAGC....................................................................................................................................................................18160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................GCAGCA---------------ACA---------------------ACAGCAACAG...............................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCA---------------ACA---------------------ACAGCAACAGC..............................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................AGCA---------------ACA---------------------ACAGCAACAGC..............................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................AGCA---------------ACA---------------------ACAGCAACAGCA.............................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCA---------------ACA---------------------ACAGCAACA................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CAATCCCG------------------------------------------------------C----------------------------------------------GGCAGGAGCACCCC----------------------CTG-------CCCCCCAATGCCAAAC---------------------------------------------------------------------------------GCTCCACAGCCCACAGCACGCCTCCCAGCAGC---------------------------------------------------------AGCA------GCAGCAGC------AACAACAGC-------------AGCAGCAGCAA---------------CACCA------GCAGCAGCAGCAACAGCAGCAGCATCC------------------------CCA-----------------------GC----------------------------AGCA----AC-----------------GC-----GGCCTCAAG---------------------CGCTCCGGCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAGCAGCAGCATC...........................................................................................................................................................21191.0520000002000000000000
...................................................................................................................................................................................................................................................................................CCCAGCAGC---------------------------------------------------------AGCA------GCAGCAGC------A...............................................................................................................................................................................................................................................22160.13220000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................ACCA------GCAGCAGCAGCAACA......................................................................................................................................................................19200.10200000000002000000
.....................................................................................................................................................................................................................................................................................................................................................AGCA------GCAGCAGC------AACAACAGC-------------AGCA......................................................................................................................................................................................................................25200.10200000000000200000
...................................................................................................................................................................................................................................................................................................................................................................CAGC------AACAACAGC-------------AGCAGCAG..................................................................................................................................................................................................................21200.05100000000000100000
.........................................................................................................................................................................................................................................................................................AGC---------------------------------------------------------AGCA------GCAGCAGC------AACAACAGC-------------A.........................................................................................................................................................................................................................25200.05100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................CACCA------GCAGCAGCAGC..........................................................................................................................................................................16200.05100000001000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAACAGCAGCAGC..............................................................................................................................................................19200.05100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................C------AACAACAGC-------------AGCAGCAGCA................................................................................................................................................................................................................20200.05100010000000000000
.................................................................................................................................................................................................................................................................................................................................................................AGCAGC------AACAACAGC-------------AGCAGCAG..................................................................................................................................................................................................................23200.05100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................CA------GCAGCAGC------AACAACAGC-------------AGCAGC....................................................................................................................................................................................................................25200.05100100000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................AGCAA---------------CACCA------GCAGCA...............................................................................................................................................................................16200.05100000000001000000
........................................................................................................................................................................................................................................................................................................................................................A------GCAGCAGC------AACAACAGC-------------AGCA......................................................................................................................................................................................................................22200.05100000000000100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAACAGCAGCAGC..............................................................................................................................................................21200.05100000000000100000
........................................................................................................................................................................................................................................................................................................................................................A------GCAGCAGC------AACAACAGC-------------AGCAGCAGCA................................................................................................................................................................................................................28200.05100000000000010000
droSec2
AACAGCAG------------------------------------------------------T-------------------------------------------------TGCAGCAG-------------------------------------------------------------------------------------------------------------------CAGCAACAACTGCTTCAGTTGTCCATCCAACAGGCGGCTCACCATCATCAGCAGGAG---CAGCATC---------------------------------------------------------------GCCAACAGCAGCAACAG-CAACACCAGCAGCA---------------ACA---------------------ACAGCAGCAGCATCA------------------------CCA-----------------------GC----------------------------AGCA----ACAG--------------CAGGG-TCATCCACAGGCCCC---------GC------CACCGCAGCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................................................................................................................................................................................................................................................................................CACCATCATCAGCAGGAG---C.....................................................................................................................................................................................................................................................................................................................1912.0020110
..................................................................................................................................................................................................................................................................................CACCATCATCAGCAGGAG---CAGC..................................................................................................................................................................................................................................................................................................................2211.0010010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCA------------------------CCA-----------------------GC----------------------------AGCA----ACAG--------------CAGGG-T.........................................2611.0010010
.......................................................................................................................................................................................................................................................................................TCATCAGCAGGAG---CAGCATC---------------------------------------------------------------................................................................................................................................................................................................................................................2011.0010001
...................................................................................................................................................................................................................................................................................................G---CAGCATC---------------------------------------------------------------GCCAACAGCAGCAACAG-C.............................................................................................................................................................................................................................2611.0010010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCATCA------------------------CCA-----------------------GC----------------------------AGCA----ACAG--------------CAGGG-T.........................................2911.0010100
.............................................................................................................................................................................................................................................................................................GCAGGAG---CAGCATC---------------------------------------------------------------GCCAACAGC.......................................................................................................................................................................................................................................2311.0010010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC----------------------------AGCA----ACAG--------------CAGGG-TCATCCACA.................................2411.0011000
............................................................................................................................................................................................................................................................................................AGCAGGAG---CAGCATC---------------------------------------------------------------GCCAACA.........................................................................................................................................................................................................................................2211.0010010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCA------------------------CCA-----------------------GC----------------------------AGCA----ACAG--------------C...............................................2120.5010010
..........................................................................................................................................................................................................................................................................................................................................................................................................GCA---------------ACA---------------------ACAGCAGCAGCATCA------------------------..................................................................................................................................2180.1310010
.........................................................................................................................................................................................................................................................................................................................................................................................................AGCA---------------ACA---------------------ACAGCAGCAGCATCG------------------------..................................................................................................................................22150.0710010
............................................................................................................................................................................................................................................................................................................................................................................................................A---------------ACA---------------------ACAGCAGCAGCATC...........................................................................................................................................................18150.0710010
........................................................................................................................................................................................................................................................................................................................................................................................................CAGCA---------------ACA---------------------ACAGCAGCAGCA.............................................................................................................................................................20200.0510100
droYak3
CAGTCGTG---------------------------------------------------AGCCA-CGCAGCAGCTCCCCTCCCCTGCAG-CA--GCAGCAA-------------------T------AT----------------------------------------------------------------------------CA------GCAGCA---------------------------------G---------------------CAGCAGCAGCAGCAG------------CAGC------------------------AG---CAACAGCAGCA------GCAG---C------A---G---------CAG-CAACAGCAACAGCA---------------GCA---------------------ACAGCAGCTGCAACA------------------------GCA-----------------------ACAGCAACAGCTGCAACAGCAA-------CAGCT----GCAG--------------CAT----------CAGCAGCA---------G---CACT--------TCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAA-------CAGCT----GCAG--------------CAT----------CA.................................1911.00100000100000
.................................................................................................................................................................................................................................................................................................................................................................AG---C------A---G---------CAG-CAACAGCAACAGCA---------------GCA---------------------AC.......................................................................................................................................................................27200.5010000000000010
........................................................................................................................T------AT----------------------------------------------------------------------------CA------GCAGCA---------------------------------G---------------------CAGCAGCAGC.................................................................................................................................................................................................................................................................................................................................2250.20101000000000
......................................................................................................................................................................................................................CAGCA---------------------------------G---------------------CAGCAGCAGCAGCAG------------CAGC------------------------....................................................................................................................................................................................................................................................................................25200.10200000000002
...............................................................................................................................................................................................................................................................................................................GC------------------------AG---CAACAGCAGCA------GCAG---C------A---G---------CAG-C.............................................................................................................................................................................................................................26200.05101000000000
..............................................................................................................................................................................................................................................................................................................................................CAACAGCAGCA------GCAG---C------A---G---------CAG-CA............................................................................................................................................................................................................................23200.05100010000000
.................................................................................................................................................................................................................................................................................................................................................................................G---------CAG-CAACAGCAACAGCA---------------GCA---------------------ACA......................................................................................................................................................................24200.05101000000000
......................................................................................................................................................................................................................................................................................................................................................GCA------GCAG---C------A---G---------CAG-CAACAGC.......................................................................................................................................................................................................................20200.05101000000000
...............................................................................................................................AT----------------------------------------------------------------------------CA------GCAGCA---------------------------------G---------------------CAGCAGCAGCAGCAG------------CA..............................................................................................................................................................................................................................................................................................................28200.05100100000000
............................................................................................................................................................................................................................................................................................AGCAG------------CAGC------------------------AG---CAACAGCAGC.....................................................................................................................................................................................................................................................................21200.05101000000000
............................................................................................................................................................................................................................................................................................................................................................................................AG-CAACAGCAACAGCA---------------GCA---------------------ACAG.....................................................................................................................................................................23200.05101000000000
......................................................................................................................................................................................................................CAGCA---------------------------------G---------------------CAGCAGCAGCAGCAG------------CAGC------------------------A...................................................................................................................................................................................................................................................................................26200.05101000000000
...............................................................................................................................................................................................................................................................................................................................................................GCAG---C------A---G---------CAG-CAACAGCAACAGCA---------------.................................................................................................................................................................................................24200.05101000000000
..................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCAG------------CAGC------------------------AG---CA.............................................................................................................................................................................................................................................................................23200.05101000000000
............................................................................................................................................................................................................................................................................................AGCAG------------CAGC------------------------AG---CAACAGCA.......................................................................................................................................................................................................................................................................19200.05100010000000
...................................................................................................................................................................................................................................................................................................................................................GCAGCA------GCAG---C------A---G---------CAG-CAACAGC.......................................................................................................................................................................................................................23200.05101000000000
.....................................................................................................................................................................................................................GCAGCA---------------------------------G---------------------CAGCAGCAGCAG...............................................................................................................................................................................................................................................................................................................................19200.05101000000000
.........................................................................................................................................................................................................................................................................................................................................AG---CAACAGCAGCA------GCAG---C------A---G---------C.................................................................................................................................................................................................................................21200.05100010000000
............................................................................................................................................................................................................................................................................................................................................................................................AG-CAACAGCAACAGCA---------------GCA---------------------A........................................................................................................................................................................20200.05100000100000
.............................................................................................................................................................................................................................................................................................GCAG------------CAGC------------------------AG---CAACAGCAGCA------GCA...........................................................................................................................................................................................................................................................24200.05100100000000
..........................................................................................................................................................................................................................................................................................................................................G---CAACAGCAGCA------GCAG---C------A---G---------CAG-CA............................................................................................................................................................................................................................24200.05101000000000
droEre2
AGCATCAG---------------------------------------------------CAGCA--------GC-------------AG-CA--GCAGCAT-------------------C------AA----------------------------------------------------------------------------CAGCA---GCAGCAGCA------------------------------------------------------------------G---CAACAGCAGCAAC------------------------AG---CAGCAACAGCA------GCAGCAGC------AACAA---------CAGC-AACAGCAGCAGCAGCAACAGCAGCAGCATCA---------------------ACAGCA-----------------------------------------------------------AC------AGCAGCAACAGCAA-------CAGCA----GCAGCAGTTGCAGCCACA------------ACAGCAGCT---------GC------AGCCGCAACASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACA------------ACAGCAGCT---------GC------AGCCGCA...2211.0010000100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAA-------CAGCA----GCAGCAGTT.........................................................2220.5010001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAA-------CAGCA----GCAGCAGTT.........................................................2120.5010000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCATCA---------------------ACAGCA-----------------------------------------------------------AC------A...............................................................................................1930.3310000100
..............................................................................................GCAGCAT-------------------C------AA----------------------------------------------------------------------------CAGCA---GCAGCAGCA------------------------------------------------------------------G---C........................................................................................................................................................................................................................................................................................................................2640.2510100000
..........................................................................................................................................................................................................................................................................................................................................G---CAGCAACAGCA------GCAGCAGC------................................................................................................................................................................................................................................................20200.1531000020
..............................................................................................................................................................................................................................................................................................................AAC------------------------AG---CAGCAACAGCA------GCA...........................................................................................................................................................................................................................................................19200.1020002000
..........................................................................................................................................................................................................................................................................................................CAGCAAC------------------------AG---CAGCAACAGCA------GCA...........................................................................................................................................................................................................................................................23200.1021000100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAA-------CAGCA----GCAGC.............................................................18200.1020000020
..................................................................................................................................................................................................................................................................................................................................................................GCAGC------AACAA---------CAGC-AACAGCAGCA...................................................................................................................................................................................................................24120.0810000010
............................................................AGCA--------GC-------------AG-CA--GCAGCAT-------------------C------AA----------------------------------------------------------------------------CA..............................................................................................................................................................................................................................................................................................................................................................................................................22120.0811000000
..................................................................................................CAT-------------------C------AA----------------------------------------------------------------------------CAGCA---GCAGCAGCA------------------------------------------------------------------G---C........................................................................................................................................................................................................................................................................................................................22160.0610001000
....................................................................................................................................................................................................................................................................................................................................................................AGC------AACAA---------CAGC-AACAGCAGCA...................................................................................................................................................................................................................22160.0610000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAA-------CAGCA----GCAGCAGT..........................................................18190.0511000000
.....................................................................................................................................................................................................................................................................................................................................................................GC------AACAA---------CAGC-AACAGCAGC....................................................................................................................................................................................................................20200.0510100000
...........................................................................................................................................................................................................................GCA------------------------------------------------------------------G---CAACAGCAGCAAC------------------------AG---CAGCA..........................................................................................................................................................................................................................................................................24200.0510000100
...........................................................................................................................................................................................................................................................................................................AGCAAC------------------------AG---CAGCAACAGCA------GCAGCAGC------................................................................................................................................................................................................................................................27200.0511000000
...........................................................................................................................................................................................................................................................................................................AGCAAC------------------------AG---CAGCAACAGCA------..............................................................................................................................................................................................................................................................19200.0510000100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA-----------------------------------------------------------AC------AGCAGCAACAGCA...................................................................................19200.0510000100
..............................................................................................................................................................................................................................................................................................................................................................................ACAA---------CAGC-AACAGCAGCAGC.................................................................................................................................................................................................................20200.0511000000
.................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCAGCAGCAACAGC........................................................................................................................................................................................................20200.0511000000
..............................................................................................................................................................................................................................................................................................................................................................................................C-AACAGCAGCAGCAGCAACAGCA.......................................................................................................................................................................................................23200.0510000010
................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAGCAACAGCAGCA....................................................................................................................................................................................................25200.0510001000
...................................................................................................AT-------------------C------AA----------------------------------------------------------------------------CAGCA---GCAGCAGCA------------------------------------------------------------------.............................................................................................................................................................................................................................................................................................................................19200.0510000010
.....................................................................................................................................................................................................................GCAGCAGCA------------------------------------------------------------------G---CAACAGCA.................................................................................................................................................................................................................................................................................................................18200.0511000000
........................................................................................................................................................................................................................................................................................................AGCAGCAAC------------------------AG---CAGCAACAGCA------GCAG..........................................................................................................................................................................................................................................................26200.0511000000
.......................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAACAGCAGCAGCA.................................................................................................................................................................................................21200.0510001000
......................................................................................................................................................................................................................................................................................................................................................................C------AACAA---------CAGC-AACAGCAGCAG..................................................................................................................................................................................................................21200.0510001000
...............................................................................................................................................................................................................................................................................................................................................AGCAACAGCA------GCAGCAGC------A...............................................................................................................................................................................................................................................19200.0510001000
..................................................................................................CAT-------------------C------AA----------------------------------------------------------------------------CAGCA---GCAGCAGCA------------------------------------------------------------------.............................................................................................................................................................................................................................................................................................................................20200.0510000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC------AGCAGCAACAGCAA-------CAGC.......................................................................20200.0510100000
.......................................................................................................................................................................................................................AGCAGCA------------------------------------------------------------------G---CAACAGCAGCA..............................................................................................................................................................................................................................................................................................................19200.0510001000
.......................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAACAGCAGCAGC..................................................................................................................................................................................................20200.0511000000
................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAGCAACAGCAGC.....................................................................................................................................................................................................24200.0510000010
......................................................................................................................................................................................................................................................................................................................................................................C------AACAA---------CAGC-AACAGCAGCA...................................................................................................................................................................................................................20200.0510100000
..............................................................................................................................................................................................................AGCA---GCAGCAGCA------------------------------------------------------------------G---CAACAGCAGC...............................................................................................................................................................................................................................................................................................................24200.0510100000
..........................................................................................................................................................................................................................................................................................................................................G---CAGCAACAGCA------GCAGCAGC------AA..............................................................................................................................................................................................................................................22200.0511000000
..CATCAG---------------------------------------------------CAGCA--------GC-------------AG-CA--GCAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510001000
.GCATCAG---------------------------------------------------CAGCA--------GC-------------AG-CA--GCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000010
................................................................................................................................................................................................................................................................................................................................................GCAACAGCA------GCAGCAGC------AACA............................................................................................................................................................................................................................................21200.0510000010
...........................................................................................................................................................................................................................................................................................................................................................................................CAGC-AACAGCAGCAGCAGC..............................................................................................................................................................................................................19200.0510100000
......................................................................................................................................................................................................................................................................................................................................................................C------AACAA---------CAGC-AACAGCAGC....................................................................................................................................................................................................................19200.0511000000
...............................................................................................................................................................................................................................................................................................................AC------------------------AG---CAGCAACAGCA------GCA...........................................................................................................................................................................................................................................................18200.0510000100
............................................................................................................................................................................................................................CA------------------------------------------------------------------G---CAACAGCAGCAAC------------------------AG---CAGCA..........................................................................................................................................................................................................................................................................23200.0511000000
..................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCAACAGC........................................................................................................................................................................................................19200.0510000010
..............................................................................................................................................................................................................................................................................................................................................CAGCAACAGCA------GCAGCAGC------AAC.............................................................................................................................................................................................................................................22200.0510100000
...............................................................................................................................................................................................................................................................................................................................................................................CAA---------CAGC-AACAGCAGCAGCAGCA.............................................................................................................................................................................................................23200.0510001000

Generated: 05/18/2015 at 12:31 AM