ID:

dmo_1413

 Coordinate:

scaffold_6498:2939675-2939825 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-18.5 -18.3 -18.3

Flybase annnotation

exon [dmoj_GLEANR_14273:1]; CDS [Dmoj\moj152-cds]; intron [Dmoj\moj152-in]

Repeatable elements

NameClassFamilyStrand
(A)nSimple_repeatSimple_repeat+
mature
  1. scaffold_2962:778-813 -
  2. dmo_3043  scaffold_6308:72478-72513 -
  3. scaffold_6359:805941-805976 -
  4. scaffold_6473:5373056-5373091 -
  5. dmo_3105  scaffold_6473:9884935-9884970 -
  6. scaffold_6473:12841878-12841913 -
  7. scaffold_6496:7547174-7547209 -
  8. scaffold_6496:17642120-17642155 -
  9. scaffold_6496:18076597-18076632 -
  10. scaffold_6496:24078833-24078868 -
  11. scaffold_6500:5880327-5880362 -
  12. scaffold_6500:8739605-8739640 -
  13. scaffold_6500:16090994-16091029 -
  14. scaffold_6500:18984700-18984735 -
  15. scaffold_6500:28961490-28961525 -
  16. scaffold_6540:9319120-9319155 -
  17. scaffold_6540:17251711-17251746 -
  18. scaffold_6680:287580-287615 -
  19. scaffold_6680:15546336-15546371 -
  20. scaffold_6680:24499294-24499329 -
  21. scaffold_6359:3009787-3009822 +
  22. scaffold_6473:16526104-16526139 +
  23. scaffold_6482:2441934-2441969 +
  24. scaffold_6496:1392720-1392755 +
  25. scaffold_6496:22823709-22823744 +
  26. scaffold_6496:23491429-23491464 +
  27. scaffold_6500:5740775-5740810 +
  28. scaffold_6500:11141339-11141374 +
  29. scaffold_6500:13664702-13664737 +
  30. scaffold_6500:16003845-16003880 +
  31. scaffold_6500:30682488-30682523 +
  32. scaffold_6540:2817040-2817075 +
  33. scaffold_6540:3484072-3484107 +
  34. scaffold_6540:22563994-22564029 +
  35. scaffold_6540:23946895-23946930 +
  36. scaffold_6540:30918849-30918884 +
  37. scaffold_6541:2375330-2375365 +
  38. scaffold_6654:366048-366083 +
  39. scaffold_6680:4646704-4646739 +
  40. scaffold_6680:13636103-13636138 +
  41. scaffold_816:985-1020 +
  42. scaffold_1305:1464-1499 +
  43. scaffold_6359:2889147-2889182 +
  44. scaffold_6482:1280186-1280221 +
  45. scaffold_6496:79347-79382 +
  46. dmo_1413  scaffold_6498:2939787-2939822 +
  47. scaffold_6500:8912663-8912698 +
  48. scaffold_6500:14161991-14162026 +
  49. scaffold_6500:15604623-15604658 +
  50. scaffold_6500:19289696-19289731 +
  51. scaffold_6500:20321974-20322009 +
  52. scaffold_6540:15121853-15121888 +
  53. scaffold_6540:18002741-18002776 +
  54. scaffold_6540:27093107-27093142 +
  55. scaffold_6680:14731327-14731362 +
  56. scaffold_6680:15859743-15859778 +
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TCACTTATAGAAGCCTTGAATGGTCCGCCACAGTATGTGTCTCGTCCCAGGTATGTGTGTGTTGTTCATGTGAGGAAATAAGCAAAAAAATTATTGAAGTAGAGCATTTTTATGAAGCACGTCTACATTCTTCCAGAGTTAACATGAAACATATTTCAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATTGAGCCCATTGAATATAGGAAATCAAGGACGGAGGCATGGCGGACCCCATTA
**************************************************((((((.(((((((....((.((((((.....(((........)))..(((((((.(((....)))))...))))).))))))))....)))))))..))))))...............................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total V056
head
 V041
embryo
 V049
head
 M046
female body
..................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACA..................................................... 36 0 20 19.25 385 385 0 0 0
.............................................................................................................................................................AAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA.......................................................... 36 0 6 8.50 51 19 32 0 0
................................................................................................................................................................AGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA....................................................... 36 0 14 7.07 99 19 78 2 0
...............................................................................................................................................................AAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA........................................................ 36 0 10 3.70 37 11 25 1 0
..............................................................................................................................................................AAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA......................................................... 36 0 8 1.25 10 5 4 1 0
...................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACA..................................................... 35 0 20 0.90 18 18 0 0 0
...................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAT.................................................... 36 0 20 0.45 9 1 8 0 0
.............................................................................................................................................................AAAAGAAACAAAAAAAAAAAAAAAAAAAAAAAAAAA.......................................................... 36 1 12 0.33 4 0 4 0 0
.......................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAACATCGAG................................................ 36 1 3 0.33 1 0 1 0 0
..................................................................................................................................................................................................................................GAGGGAGTCATGGCGGACCCC.... 21 2 3 0.33 1 1 0 0 0
..................................................................................................................................................................AATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACA..................................................... 36 1 20 0.30 6 0 6 0 0
.............................................................................................................................................................AAAAGAAAAAAAAAAAAAAATAAAAAAAAAAAAAAA.......................................................... 36 1 12 0.25 3 1 2 0 0
.............................................................................................................................................................AAAAGAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAA.......................................................... 36 1 10 0.20 2 1 1 0 0
...........................................................................................................................................................TCAGAAGAAAAAAAAAAAAAACAAAAAAAAAAAAA............................................................. 35 2 5 0.20 1 1 0 0 0
.............................................................................................................................................................AAAAGAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAA.......................................................... 36 1 11 0.18 2 1 1 0 0
.............................................................................................................................................................AAAAGAAAAAAAAAAAAAAAAAAAAACAAAAAAAAA.......................................................... 36 1 18 0.17 3 0 2 1 0
...............................................................................................................................................................AAGAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA........................................................ 36 1 18 0.17 3 1 2 0 0
...............................................................................................................................................................AAGAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAA........................................................ 36 1 13 0.15 2 2 0 0 0
.............................................................................................................................................................AAAAGAAAAAAAAAAAAAAACAAAAAAAAAAAAAAA.......................................................... 36 1 20 0.15 3 0 3 0 0
..................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAACA..................................................... 36 1 20 0.15 3 0 3 0 0
...................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAACAT.................................................... 36 1 20 0.15 3 2 1 0 0
............................................................................................................................................................CAAAAGAGAAAAAAAAAAACAAAAAAAAAAAAAAAA........................................................... 36 2 7 0.14 1 1 0 0 0
.............................................................................................................................................................AAAAGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAA.......................................................... 36 1 15 0.13 2 0 2 0 0
.............................................................................................................................................................AAAAGAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAA.......................................................... 36 1 8 0.13 1 1 0 0 0
.............................................................................................................................................................AAAAGAAAAAAAAAAATAAAAAAAAAAAAAAAAAAA.......................................................... 36 1 19 0.11 2 1 1 0 0
................................................................................................................................................................AGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA........................................................ 35 0 19 0.11 2 1 1 0 0
................................................................................................................................................................AGAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAA....................................................... 36 1 20 0.10 2 0 2 0 0
..................................................................................................................................................................AAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAACA..................................................... 36 1 20 0.10 2 2 0 0 0
.............................................................................................................................................................AAAAGAAAAAAAAAAAAAAAAAAAAAAAACAAAAAA.......................................................... 36 1 20 0.10 2 1 1 0 0
................................................................................................................................................................AGAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAA....................................................... 36 1 20 0.10 2 1 0 1 0
................................................................................................................................................................AGAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA....................................................... 36 1 20 0.10 2 0 2 0 0
.............................................................................................................................................................AGAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA.......................................................... 36 1 20 0.10 2 0 2 0 0
.............................................................................................................................................................AAAAGAAAAAAAAAAAAAAAAAAAAAAAAAACAAAA.......................................................... 36 1 20 0.10 2 0 2 0 0
...............................................................................................................................................................AAGAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAA........................................................ 36 1 20 0.10 2 1 1 0 0
..............................................................................................................................................................AAAGAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAA......................................................... 36 1 10 0.10 1 0 1 0 0
................................................................................................................................................................AGAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA....................................................... 36 1 20 0.10 2 0 2 0 0
.............................................................................................................................................................AAAAGAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAA.......................................................... 36 1 10 0.10 1 1 0 0 0
.............................................................................................................................................................AAAAGAAAAACAAAAAAAAAAAAAAAAAAAAATAAA.......................................................... 36 2 20 0.10 2 0 2 0 0
..............................................................................................................................................................AAAGAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAA......................................................... 36 1 11 0.09 1 0 0 1 0
.............................................................................................................................................................AAAAGAAAAAAAATAAAAAAAAAAAAAAAAAAAAAA.......................................................... 36 1 11 0.09 1 1 0 0 0
.............................................................................................................................................................AAAAGAAAAATAAAAAAAAAAAAAAAAAAAAAAAAA.......................................................... 36 1 12 0.08 1 0 1 0 0
.............................................................................................................................................................AAAAGAAAAAAAAAAAAAAAAAAAAAATAAAAAAAA.......................................................... 36 1 12 0.08 1 1 0 0 0
.............................................................................................................................................................AAAAGAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAA.......................................................... 36 1 12 0.08 1 0 1 0 0
...............................................................................................................................................................AAGAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAA........................................................ 36 1 13 0.08 1 0 1 0 0
.............................................................................................................................................................AAAAGAAATAAAAAAAAAAAAAAAAAAAAAAAAAAA.......................................................... 36 1 14 0.07 1 1 0 0 0
...............................................................................................................................................................AAGAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAA........................................................ 36 1 14 0.07 1 0 0 1 0
..............................................................................................................................................................AAAGAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAA......................................................... 36 1 16 0.06 1 0 1 0 0
...............................................................................................................................................................AAGAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAA........................................................ 36 1 16 0.06 1 0 1 0 0
................................................................................................................................................................AGAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAA....................................................... 36 1 16 0.06 1 0 1 0 0
.............................................................................................................................................................AAAAGAAAAAACAAAAAAAAAAAAAAAAAAAAAAAA.......................................................... 36 1 17 0.06 1 0 1 0 0
.............................................................................................................................................................AAAAGAAAAAAAAAACAAAAAAAAAAAAAAAAAAAA.......................................................... 36 1 17 0.06 1 0 1 0 0
..............................................................................................................................................................AAAGAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAA......................................................... 36 1 17 0.06 1 1 0 0 0
.............................................................................................................................................................AAAAGAAAAAAAAAAAAATAAAAAAAAAAAAAAAAA.......................................................... 36 1 17 0.06 1 1 0 0 0
.............................................................................................................................................................AAAAGAAAAAAAAAGAAAAAAAAAAAATAAAAAAAA.......................................................... 36 2 18 0.06 1 1 0 0 0
................................................................................................................................................................AGAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAA....................................................... 36 1 18 0.06 1 0 1 0 0
...............................................................................................................................................................AAGAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAA........................................................ 36 1 18 0.06 1 0 1 0 0
.............................................................................................................................................................AAAAGAAAGAAAAAAAAAAAGAAAAAAAAAAAAAAA.......................................................... 36 2 19 0.05 1 0 1 0 0
...............................................................................................................................................................AAGAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAA........................................................ 36 1 19 0.05 1 0 1 0 0
................................................................................................................................................................AGAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA....................................................... 36 1 20 0.05 1 1 0 0 0
.............................................................................................................................................................AAAAGAATAAAAAAAAAAAAAAAAGAAAAAAAAAAA.......................................................... 36 2 20 0.05 1 0 1 0 0
................................................................................................................................................................AGAAAAAAAAAAAAGAAAAAAATAAAAAAAAAAAAA....................................................... 36 2 20 0.05 1 1 0 0 0
...............................................................................................................................................................AAGAAGAAAAAAAAAAAAAAAAAAAAAAATAAAAAA........................................................ 36 2 20 0.05 1 0 1 0 0
................................................................................................................................................................AGAAAAAAAAAAGAAAAAAAAAAAAAAAAAACAAAA....................................................... 36 2 20 0.05 1 1 0 0 0
...............................................................................................................................................................AAGAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAA........................................................ 36 1 20 0.05 1 0 1 0 0
...............................................................................................................................................................AAGAAAATAAAAAAAAAAAAAAAAAAAAAAACAAAA........................................................ 36 2 20 0.05 1 1 0 0 0
...................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAACAT.................................................... 36 1 20 0.05 1 0 1 0 0
..............................................................................................................................................................AAAGAAAAAAAAAAAAAAAAAAAAAAAATAAAACAA......................................................... 36 2 20 0.05 1 1 0 0 0
...............................................................................................................................................................AAGAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAA........................................................ 36 1 20 0.05 1 1 0 0 0
............................................................................................................................................................TAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA........................................................... 36 1 20 0.05 1 0 0 1 0
.............................................................................................................................................................AAAAGAAAAAAAAATGAAAAAAAAAAAAAAAAAAAA.......................................................... 36 2 20 0.05 1 0 1 0 0
................................................................................................................................................................AGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAA....................................................... 36 1 20 0.05 1 0 1 0 0
...............................................................................................................................................................AAGAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAA........................................................ 36 1 20 0.05 1 1 0 0 0
...............................................................................................................................................................AAGAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAA........................................................ 36 1 20 0.05 1 0 1 0 0
................................................................................................................................................................AGAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAA....................................................... 36 1 20 0.05 1 1 0 0 0
................................................................................................................................................................AGAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAA....................................................... 36 1 20 0.05 1 1 0 0 0
...............................................................................................................................................................AAGAGAAAAAAAAAAAAAAAAAAAAAAAAATAAAAA........................................................ 36 2 20 0.05 1 0 1 0 0
.............................................................................................................................................................AAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAACA.......................................................... 36 1 20 0.05 1 0 0 1 0
..............................................................................................................................................................AAAGAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAA......................................................... 36 1 20 0.05 1 0 1 0 0
...............................................................................................................................................................AAGAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAA........................................................ 36 1 20 0.05 1 0 1 0 0
...............................................................................................................................................................AAGAAAAAAAGAAAGAAAAAAAAAAAAAAAAAAAAA........................................................ 36 2 20 0.05 1 1 0 0 0
.................................................................................................................................................................GAAAAAACAAAAAAAAAAAAAAAAGAAAAAAAAAA....................................................... 35 2 20 0.05 1 0 1 0 0
...............................................................................................................................................................AAGAATAAAAAAAAGAAAAAAAAAAAAAAAAAAAAA........................................................ 36 2 20 0.05 1 0 1 0 0
...................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAACAT.................................................... 36 1 20 0.05 1 0 1 0 0
..................................................................................................................................................................AAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAACA..................................................... 36 1 20 0.05 1 1 0 0 0
.............................................................................................................................................................AAAAGAAAAAAAAAAAGAAAAAAAAAAACAAAAAAA.......................................................... 36 2 20 0.05 1 0 1 0 0
..............................................................................................................................................................AAAGAAAAAAAAAAAAAAAAAAATAAAAGAAAAAAA......................................................... 36 2 20 0.05 1 0 1 0 0
................................................................................................................................................................AGAAAAAAAAAAAATAAAAAAAAAAAAAAAACAAAA....................................................... 36 2 20 0.05 1 1 0 0 0
................................................................................................................................................................AGAAATAAAAAAAAAAAAAAAAAAAACAAAAAAAAA....................................................... 36 2 20 0.05 1 0 1 0 0
...................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAACAT.................................................... 36 1 20 0.05 1 1 0 0 0
................................................................................................................................................................AGAAAAAAAATAAAAAAAAAAAAAAAAAAAAACAAA....................................................... 36 2 20 0.05 1 0 1 0 0
...................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGACAT.................................................... 36 1 20 0.05 1 0 1 0 0
....................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAT.................................................... 35 0 20 0.05 1 0 1 0 0
...............................................................................................................................................................AAGAAAAAAAAAAAAAAAAAAAGAACAAAAAAAAAA........................................................ 36 2 20 0.05 1 0 1 0 0
.............................................................................................................................................................AAAAGGAAAAAAAAAAAAAATAAAAAAAAAAAAAAA.......................................................... 36 2 20 0.05 1 0 1 0 0
.............................................................................................................................................................AAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA.......................................................... 36 1 20 0.05 1 1 0 0 0
...............................................................................................................................................................AAGAAAAAAAAAAAAAAAAAAAGAAAAAAAACAAAA........................................................ 36 2 20 0.05 1 0 1 0 0
.............................................................................................................................................................AAAGGAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAA.......................................................... 36 2 20 0.05 1 0 1 0 0
................................................................................................................................................................AGAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAA....................................................... 36 1 20 0.05 1 1 0 0 0
..............................................................................................................................................................AAAGAAAAAAAAAAAAAAAACACAAAAAAAAAAAAA......................................................... 36 2 20 0.05 1 1 0 0 0
...............................................................................................................................................................AAGAAAAAAAAAAAGAAAAAAAAAAAAAAAAA............................................................ 32 1 20 0.05 1 0 1 0 0
................................................................................................................................................................AGAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAA....................................................... 36 1 20 0.05 1 1 0 0 0
.............................................................................................................................................................AAAAGAAAAAATAAACAAAAAAAAAAAAAAAAAAAA.......................................................... 36 2 20 0.05 1 1 0 0 0
...............................................................................................................................................................AAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAA........................................................ 36 1 20 0.05 1 1 0 0 0
.............................................................................................................................................................AAAAGAAAAAGAAAAAACAAAAAAAAAAAAAAAAAA.......................................................... 36 2 20 0.05 1 0 1 0 0
...........................................................................................................................................................TCAACAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA............................................................ 36 1 20 0.05 1 0 1 0 0
...............................................................................................................................................................AAGAGAAAAAAAAAAAAAAAAATAAAAAAAAAAAAA........................................................ 36 2 20 0.05 1 0 0 1 0
...............................................................................................................................................................AAGATAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAA........................................................ 36 2 20 0.05 1 1 0 0 0
................................................................................................................................................................AGAAAAAGAAAAAAAAAAAAAAGAAAAAAAAAAAAA....................................................... 36 2 20 0.05 1 0 1 0 0
................................................................................................................................................................AGAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAA....................................................... 36 1 20 0.05 1 0 1 0 0
..............................................................................................................................................................AAAGGAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAA......................................................... 36 2 20 0.05 1 0 1 0 0
.............................................................................................................................................................AAAAGAAAAAAAAAAAACAAAAAAAAAAAAAAAAA........................................................... 35 1 20 0.05 1 0 1 0 0
.............................................................................................................................................................AAAAGAAAAAAAAAATAAAAAAAAAAAAAAAAAACA.......................................................... 36 2 20 0.05 1 0 1 0 0
..............................................................................................................................................................AAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA......................................................... 36 1 20 0.05 1 1 0 0 0
.............................................................................................................................................................AAAAGAAAAAAAAAAAACAAAAAAAAAAAAAGAAAA.......................................................... 36 2 20 0.05 1 0 1 0 0
................................................................................................................................................................AGAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA....................................................... 36 1 20 0.05 1 0 1 0 0
...............................................................................................................................................................AAGAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAA........................................................ 36 1 20 0.05 1 0 1 0 0
................................................................................................................................................................AGAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAA....................................................... 36 1 20 0.05 1 0 1 0 0
..............................................................................................................................................................AAAGAAAAATAAAAAAGAAAAAAAAAAAAAAAAAAA......................................................... 36 2 20 0.05 1 0 1 0 0
.............................................................................................................................................................AAAAGGAAAAAAAAAAAAAAAAAGAAAAAAAAAAAA.......................................................... 36 2 20 0.05 1 1 0 0 0
..................................................................................................................................................................AAAAAAAAAAAAAAAATAAAAAAAAAAATAAAAACA..................................................... 36 2 20 0.05 1 0 0 1 0
..............................................................................................................................................................AAAGAAAAAAAGAAAAAAAAAAAAAAAAAAAACAAA......................................................... 36 2 20 0.05 1 1 0 0 0
.............................................................................................................................................................AAAAGAAAAAAAAAGATAAAAAAAAAAAAAAAAAAA.......................................................... 36 2 20 0.05 1 1 0 0 0
.............................................................................................................................................................AAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAACAAA.......................................................... 36 1 20 0.05 1 0 1 0 0
.............................................................................................................................................................AAAAGAAATAAAAAAAAAAAAAAAAAATAAAAAAAA.......................................................... 36 2 20 0.05 1 0 1 0 0
..................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAACA..................................................... 36 1 20 0.05 1 0 1 0 0
....................................................................................................................................................................ATAAAAAAAAAAAAAAAAGAAAAAAAAAAAAACATT................................................... 36 2 20 0.05 1 0 1 0 0
................................................................................................................................................................AGAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAA....................................................... 36 1 20 0.05 1 0 1 0 0
...............................................................................................................................................................AAGAAAAAAAAAAAAAAAAAAAAAA................................................................... 25 0 20 0.05 1 0 0 0 1
................................................................................................................................................................AGAAAAATAAAAAAAAAAAAAAAAAAAAAATAAAAA....................................................... 36 2 20 0.05 1 1 0 0 0
..................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAC...................................................... 35 1 20 0.05 1 0 1 0 0
..............................................................................................................................................................AAAGAAAAAAAAAAAAAAAAAAAAGAAAATAAAAAA......................................................... 36 2 20 0.05 1 1 0 0 0
...............................................................................................................................................................AAGAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAA........................................................ 36 1 20 0.05 1 0 1 0 0
...................................................................................................................................................................AAAAAAAAAAAAAAAGAAAGAAAAAAAAAAAAACAT.................................................... 36 2 20 0.05 1 1 0 0 0
...................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAACAT.................................................... 36 1 20 0.05 1 0 1 0 0
...............................................................................................................................................................AAGAAAAAAAAAAAATAAAAAAAAAAAAAAAAAACA........................................................ 36 2 20 0.05 1 0 1 0 0
................................................................................................................................................................AGAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAA....................................................... 36 1 20 0.05 1 1 0 0 0
................................................................................................................................................................AGAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAA....................................................... 36 1 20 0.05 1 0 1 0 0
.............................................................................................................................................................AAAAGAAAAAAAACAAAAAAAAAAATAAAAAACAA........................................................... 35 3 20 0.05 1 1 0 0 0
...............................................................................................................................................................AAGAAAAAAAAAAAAAAAAAAAAAAA.................................................................. 26 0 20 0.05 1 0 0 0 1

Anti-sense strand reads

AGTGAATATCTTCGGAACTTACCAGGCGGTGTCATACACAGAGCAGGGTCCATACACACACAACAAGTACACTCCTTTATTCGTTTTTTTAATAACTTCATCTCGTAAAAATACTTCGTGCAGATGTAAGAAGGTCTCAATTGTACTTTGTATAAAGTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTAACTCGGGTAACTTATATCCTTTAGTTCCTGCCTCCGTACCGCCTGGGGTAAT
**************************************************((((((.(((((((....((.((((((.....(((........)))..(((((((.(((....)))))...))))).))))))))....)))))))..))))))...............................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total V056
head
 M046
female body
 V049
head
..............................................................................................................................................................TTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT.......................................................... 35 0 9 0.11 1 1 0 0
..........................................................CACAACAACTGCACTCATTT............................................................................................................................................................................. 20 3 10 0.10 1 0 1 0
..............................................................................................................................................................TTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTT............................................................ 33 0 19 0.05 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6498:2939625-2939875 + dmo_1413 TCACTT--ATAGAA-----GCCTTGAATG-GTCCGCCACAGTATGTGTCTCG---TCCCAGGTATGTGTGTGT-TGTTCATGTG----------------------------------------------------------------------AGGAAATAAG---CAAAAAAA------------------------------------------------T--------------------------------------------T-----------------------------------------ATTGAA--G----------------------------TAGA---------------------GCATTTT-T--ATGAAGC--------------------AC---------GTC-------------------------------TACA---------TTCTTCCAGAGTTAACATGAAACA-----T--ATTT-----------CAAAAGAA-----------------------------------------------------------------------------AA----------------------------------AAAAAAAAAA---AAAAA------AAAA--------A----AA-------------------AAAA-----------A----AAACA-----TTG----AGC------------CCA-T--------TGAATATAGGAAATCAAGGACGGAGGCATGGCGGACCCCATTA
droVir3 scaffold_13049:25133736-25133943 - ACGGA-G-G-CTTC----------GCAGG-ATCC----------------------------------------------------------------------------------ACCCCAACGATTTCCCAAACCGGGTACTTA----GATAAAG----------AAA-----ACATAAA------------------------------------------------CC----------------------------AAAAAATAA-----------------------------------------TTTAAA--A---------------------------------CCCAATATGT---------AGTATTAA-------------------------------GTATGTTCAAT--C---------CATTATTGTAAAGCTAG-GTTC--AAATGCTCAAGC----------ATAGTATCAA-C-------AAA--TTATAA-------------------------------------------------------------------------------------------------TA------A----------------AA---GAAACAAAAA---AAAAA---ATAGATA--------A----AA-------------------TAAA-----------A------------------------AAAC---------------------------------------------------------------A
droGri2 scaffold_14830:2159925-2160114 - TCCCTT--CCAGAA------------------------------------------------------------------------------------------------------------------------------------------------GC----CAG----------G--------CCGGACTGGCATGGCATAAGCCCCATTAATATGTATGG----------------------------TATTAAATGAGCAAAGC-----------------------------------------TTT-AAATGGCCAATTGGTTTGTCTGCATGTAA-----------------------------------------TATATTACTTTTTTTTATTGG-----------------------TCTT-----------------------------------------------TCAACTTAAAAGA-----C--CTATCAAGG-TA----------T----------------------------------------------------------------------------------TA-----------------------------AAAAAAAA-----CAAAA----TAAATA--------A----AA-------------------AAAA-----------T------------------------AAAC---------------------------------------------------------------A
droWil2 scf2_1100000004902:6811085-6811240 - TATGTG--TTA-------------------------------------------------GGTGTGTGTGTGTGTGTGTGTGTGA---------------------------------------------------------------GCCAAAAAG----------AAG-----AGAAAGACAAA----------------------------------------------------------------------------AA-----G----------------------AACTATAAAT---------------------------------------------------------------------------------------TCTTCTACCTTGCAAA-----------------------CGGC-----------------------------------------------AAAACATAAAAAATATAC-AAA--------------------AA-----------------------------------------------------------------------------ACA--AAA----------------------AAA---AAAGCAAAAG---TAAGA------------------A----AC-------------------AGAA-----------AAAGCAC-----------TC-------AA---------------------------------------------------------------C
dp5 XL_group1e:5069009-5069124 - AAAAA-A-T-AATA-----------A-----------------------------------------------------------------------------------------------------------------------------------------------AA-------------------------------------------------------------------------------------------------------------------------------------TAAATAAATAAA--A----------------------------TAAATTTAAA----T-----------------TG--------------T--TA-----TCGCAA------------CGACATTTGG---TGCCATATAAT------------------------------------------AT----------------------------------------------------------------------------------------------------TA----------AAAAT------------------------AAAATAAATAATAA---TAAAA------------TAAAA-A----AA-------------------AAAT-----------A------------------------AAAT---------------------------------------------------------------A
droPer2 scaffold_7:1971-2148 - CCGCG-ACG-GTTT----------GTTTT-ATC------------------G---CTCCGCGTATGCGTCCAT-------------------------------------------------------------ACCCCGCGCGTAGGAGGAAGCAGAG------------------AGGA-------------ACAA-------------------------GTGTTCGGCTGTTAGTGGCTGATCGAAGTTGA-A---------------------------------------------------------------------------------------------------A----T-----------------------------------------------------------TGT-------------------------------CACA---------G--------------------AGA-----T--CTAGCCTGG-TC---CAAAAGAA-----------------------------------------------------------------------------ACAAAAAAAAA-------------------------ATAGCAAGAA---TAAGA------------C-----A----AA-------------------AAAA-----------A------------------------AAAC---------------------------------------------------------------A
droAna3 scaffold_13450:2227-2356 + TTTATT--AAAAAA------------------------------------------------------------------------------------------------------------------------------------------------AA----AAA----------GCTAATAAA----------------------------------------------------------------------------AT-----T----------------------AAAAACAAAG----------------------------------------------------------------------AACTCT-----------------ATTTAATAAAAA---AC---------AAT-------------------------------TACA---------AATC-------------TAAAATACAAAA-AAA---------------------------------------------------------------------------------------------------ATAAAAAA------A----------------AA---AAAATAAAAA---AAAAA------------------A----AA-------------------AAAA-----------AAAAAAA-----------AC-------AC---------------------------------------------------------------T
droBip1 scf7180000395471:148577-148729 + AAAAG-A-A-AAATA----------AA-------------------------------------------------------AAA---------------------------------------------------------------------------------------A----A----------------------------------------------------------------------------------------TAG-----------------------------------------CCTAAG--G---------------------------------T---------TTGAACTGAAGAATTTT-T--------------A--GG-----GCTTG---------AA--C---------TTTAGCTAAAAAATA-------A----------------------------AAC--------------TT---GAAC-T------------------------------------------------------------------------------------------------------T---------GAAAAAATAAAAAAAAGAATAA---AAAGT------------TAAAAAA----AT-------------------A-----------------------------------------TAATTAAGGTAAGGTTAAATTAAGGA--------------------AGG----------------A
droKik1 scf7180000302063:13353-13497 + ATATTT--ATAG-T-----------T----------------------------------------------------------------------------------------------------------------TTAATATAGATAAAAAAAG----------AAA-----ATAATAATAAA----------------------------------------------------------------------------AA-----T----------------------AAAAATAAAA----------------A----------------------------------------AT-------------------AAAT---------------------AAAT------------AAT-------------------------------TATA---------AAAT-------------AAAAAAA--------------TAA-TT---AAAAATAA-----------------------------------------------------------------------------ATAAAA-------------------------TAAAAATAAAAATAA---AAAAA------------------------T-------------------AGAA-------AATAA----AA-----------ATA----------------------------------------------------ACA----------------T
droFic1 scf7180000454050:1184312-1184529 + TATAT-G-TATGTATGCAAGAGATATATGTGTATGTGTTAGTGTGTGTGTTGTTTACCTGTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGCGTGTGTGTATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTTAATAATGTTACGCGCTTATCAAGCGGGTTTATCTGCCTGGCATTTATATAGTATACGTGAATGCCCTCGCCGCCGACAAAAG------CAATAATCGGAGGGATTCCAGACAAAAAAAAAACCAA---AAAAG------------------A----AA----------------------------------A----AA-----------AAAA-----CA---------------------------------------------------------------A
droEle1 scf7180000491273:1425727-1425853 + TGTTAT--T-AAAA-----------T------------------------------------------------------------------------------------------------------------------------------------AT----AAA----------A--------T--------------------------------------------------------------------AAAATAAAA-----A--------------------------------------------------------------------------------------------AAGAATAGTGGATCTTT-T--------------A--TA-----ACATAA---------GCTT-------CACAATTTTAAACAAT-------------------------------------ATTACACA-----C--TTATTGAGA--------------------------------------------------------------------------------------------------------------------------TAAAAAAAAAACAAG---AAAAC------------------A----AT----------------------------------A----A----------------AGCAAAA---------------------------------------------------------------A
droRho1 scf7180000777565:811-976 + TTTATG--TTAGAAA------------------------------------------------------------------------------------------------------------------------------------------------G----------------TA----CAAA--------------------------------------------TT----------------------------AAAAGACAAAAAGTGTTGTACCGGAATAGAAAATATATATAAAATAAATAAATAAA--A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----------------------------------------------------------------TAAATAAAAAACACTGTTAACAAAAAAAA------AAATAATAAAAACGAAACTGGAA---------------------------------------------------------------------A-----------A----AATCATCAAAT-G----AGA------------AAA-----------------------GCCAGTGCGAAGA----------------C
droBia1 scf7180000302422:3420826-3421000 - TTGTTT--G-TTTT-----------T------------------------------------------------------------------------------------------------------------------------------------------ACA----------A--------T--------------------------------------------------------------------TAAATGGAAAAAAT-----------------------------------------TTTTAA--G---------------------------------TTCAACGTT-------------------TATT---------------------TTATGAC---------TTT-------------------------------TACA---------TTCTTTTAATATTAATACTAAAC-------AAA--------------------AT-----------------------------------------------------------------------------ACA--TTT----------------------TAA---AAATTAAAAGTAAAAGGTCCAATAAATA----------------------------------AAATGCCGCAG----A----AACGTTCTAGT-T----AGC------------ATA-C--------TTAAGATATG-------------AAA----------------T
droTak1 scf7180000414686:6963-7131 - AAGTAT--G-TGTA-----------T----------------------------------GATGTATGTATATACATATATATTT---------------------------------------------------------------TATTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------AT--G-----------------------------------------------------------T-T--AAGAATC--------------------AC---------TTC-------------TCTATACTGCTTG-GTTC--ATTTACA----A------------AA---TAAAAT-----G--GTATTATTT------CAAAAGAA-----------------------------------------------------------------------------AC--------------------------------ATTAAATAAAAA---CAAAA------------CAAAAAA----GA-------------------ACAT-----------A----AAACTTATAGTTG----AGT------------TCT-T--------T----------------------GAA----------------T
droEug1 scf7180000409462:1810633-1810807 - GTGTGT--G-AGTG-----------T------------------------------------------------TGGGAATGAA----------------------------------------------------------------------AAGAA------------------ATGG-------------GCAAGTGGAGAGGTTGATCGGCAGAAA-AG----------------------------TGA-AGATGTGAAGAGC-----------------------------------------TTT-AGATGAAGAACAACAACAAGTGCATGTGAATATT--------------------------------------------------------------------------------------------------------------------------------GAATTGACATCGAAGC-----T--CCGT---------------------------------------------------------------------------------------TA----------AAGAAAAA-------------------------ATAGCAAAAA---GCAAA------------T-----AAA--AA-------------------AAAG-----------C------------------------AAAC---------------------------------------------------------------A
dm3 chr3L:23270172-23270301 - TAAGT-A-A-AAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------A------------------------------------------------TCATTTAGTTATTGTATATTGATAATAATATA-T---------------------------------------------------------------------------------------------------A----T-------------------------------------------------------------------------------------------------------------------------AATAATATA-----T--ATTT----T-------CAAATAATA---------------------------------------------------------------------------ACAACAAAATA-------------------------ATAATAAAAA---TAATA------A-----------A----AA-------------------AAATATAG------------------------------------------CAACCGCCTTTTAGCAT---------------------AAG----------------A
droSim2 3l:23521420-23521542 + AAGGA-A-T-GAGA----------------------------------------------------------------------------------------------------------------------------------------------------------ATA-----AA----TAAC----------------------------------------------------------------------------------------------------------------------------ATTGAA--G----------------------------AAGA---------------------TCATTTTTT--------------A--GA-----TCAGAA------------CCCTACAGGG---GAACATATAAT------------------------------------------AAT-----A--ATA---TAA-------------------------------------------------------------------------------------------------CA------A---------GAATAGACAGAAAAAAAAAAAA---AAAAA------------------C----T-----------------------A-----------A----AA-----------ATAT-----TA---------------------------------------------------------------A
droSec2 scaffold_15:1527300-1527448 + TAGGG-A-A-TTTTG----------TA-------------------------------------------------------ACG---------------------------------------------------------------------------------------AAT------------------------------------------------T--------------------------------------------C-----------------------------------------AACGAG--G---------------------------------T---------AT--------------------------------------------------GA-CATT--C---------CACTTTTGAACAACTATT----TTTA---------TTGCTATTGAGAAAATACTGATTA-----T--TTTT--TAG-------------------------------------------------------------------------------------------------CA------A---------AA----------AAAAAAAAAA---AAAAA---AAAAACA--------A----AA-------------------T--A-----------A----TAATA-----T------TGCCAAA----------A-------T-TTGA--------------------ATA----------------T
droYak3 v2_chr2h_random_002:245790-245948 + ATATG-A-A-GAAAG----------AA-------------------------------------------------------ATAAACTAAACATTGAGAATTAAGTAATGGAATTACTCCAACAATTTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCA-----------------------CGCC-------AAAGTAAT--------T----------------------------ATCA--C---------------AAAT-ATGAAGAAAGAA-----------------------------------------------------------------------------AT----------------------------------AAACTAAAAA---CAAGA------------TAAAAAA----AC-------------------AGGT-------TGTAA----AG----------------------------AAACCGTTACCTAACAAA--------------------ATA----------------T
droEre2 scaffold_4770:1446071-1446216 - AAGTT-A-T-AGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------TTG-A--------------A--CA-----TCTTAA---------AATC-------TATGAGTACATATAGT----------------------------------GA---TAAAAA-----T--GCATTATGA-CA------------------------------------------------------------------------------------------------------A---------AA----------AAAAAAAA-----AAAAATAAATAAATAAATAAAAAAAAAAAGGAAAGGAAAGGAAAGGAAAAAAA-----------T----AAATA-----TAA----AGCCAAT---------------------------------------------------------------T

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
TCACTT--ATAGAA-----GCCTTGAATG-GTCCGCCACAGTATGTGTCTCG---TCCCAGGTATGTGTGTGT-TGTTCATGTG----------------------------------------------------------------------AGGAAATAAG---CAAAAAAA------------------------------------------------T--------------------------------------------T-----------------------------------------ATTGAA--G----------------------------TAGA---------------------GCATTTT-T--ATGAAGC--------------------AC---------GTC-------------------------------TACA---------TTCTTCCAGAGTTAACATGAAACA-----T--ATTT-----------CAAAAGAA-----------------------------------------------------------------------------AA----------------------------------AAAAAAAAAA---AAAAA------AAAA--------A----AA-------------------AAAA-----------A----AAACA-----TTG----AGC------------CCA-T--------TGAATATAGGAAATCAAGGACGGAGGCATGGCGGACCCCATTASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-----------------------------------------------------------------------------AA----------------------------------AAAAAAAAAA---AAAAA------AAAA--------A----AA-------------------AAAA-----------A----AAACA-----..............................................................................362019.2538500038500
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGAA-----------------------------------------------------------------------------AA----------------------------------AAAAAAAAAA---AAAAA------AAAA--------A----AA-------------------AAAA-----------A----........................................................................................3668.505103201900
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAA-----------------------------------------------------------------------------AA----------------------------------AAAAAAAAAA---AAAAA------AAAA--------A----AA-------------------AAAA-----------A----AAA.....................................................................................36147.079907821900
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAA-----------------------------------------------------------------------------AA----------------------------------AAAAAAAAAA---AAAAA------AAAA--------A----AA-------------------AAAA-----------A----AA......................................................................................36103.703702511100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAA-----------------------------------------------------------------------------AA----------------------------------AAAAAAAAAA---AAAAA------AAAA--------A----AA-------------------AAAA-----------A----A.......................................................................................3681.2510041500
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----------------------------------------------------------------------------AA----------------------------------AAAAAAAAAA---AAAAA------AAAA--------A----AA-------------------AAAA-----------A----AAACA-----..............................................................................35200.90180001800
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----------------------------------------------------------------------------AA----------------------------------AAAAAAAAAA---AAAAA------AAAA--------A----AA-------------------AAAA-----------A----AAACA-----T.............................................................................36200.459080100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAA-----------------------------------------------------------------------------AA----------------------------------AAAAAAAAAA---AAAAA------AAAA--------A----AA-------------------AAAA-----------A----AA......................................................................................35190.112010100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA----------------------------------AAAAAAAAAA---AAAAA------AAAA--------A----AA-------------------AAAA-----------A----AAACA-----T.............................................................................35200.051010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAA-----------------------------------------------------------------------------AA----------------------------------AAAAAAAAAA---AAAAA------AAA...............................................................................................................................................25200.051100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAA-----------------------------------------------------------------------------AA----------------------------------AAAAAAAAAA---AAAAA------AAAA--------......................................................................................................................................26200.051100000
droVir3
ACGGA-G-G-CTTC----------GCAGG-ATCC----------------------------------------------------------------------------------ACCCCAACGATTTCCCAAACCGGGTACTTA----GATAAAG----------AAA-----ACATAAA------------------------------------------------CC----------------------------AAAAAATAA-----------------------------------------TTTAAA--A---------------------------------CCCAATATGT---------AGTATTAA-------------------------------GTATGTTCAAT--C---------CATTATTGTAAAGCTAG-GTTC--AAATGCTCAAGC----------ATAGTATCAA-C-------AAA--TTATAA-------------------------------------------------------------------------------------------------TA------A----------------AA---GAAACAAAAA---AAAAA---ATAGATA--------A----AA-------------------TAAA-----------A------------------------AAAC---------------------------------------------------------------ASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................CAAT--C---------CATTATTGTAAAGCTAG-G..................................................................................................................................................................................................................................................................................................................................................................2335.3316001010000000000000001000000300020100000700000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................CAAT--C---------CATTATTGTAAAGCTAG-GTTC--A............................................................................................................................................................................................................................................................................................................................................................2714.004001010000000000000000000000010010000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................CAAT--C---------CATTATTGTAAAGCTAG-GTTC--.............................................................................................................................................................................................................................................................................................................................................................2612.002001000000000000000000000000100000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................CAAT--C---------CATTATTGTAAAGCTAG-GT.................................................................................................................................................................................................................................................................................................................................................................2431.334000010000000000000000000000010000000000200000000000000000000000
..............................................................................................................................................CTTA----GATAAAG----------AAA-----ACATAAA------------------------------------------------CC----------------------------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTGTAAAGCTAG-GTTC--AAAT.........................................................................................................................................................................................................................................................................................................................................................2311.001000010000000000000000000000000000000000000000000000000000000000
........................................................................................................................CAACGATTTCCCAAACCGGGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000010000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................AA--A---------------------------------CCCAATATGT---------AGTATTAA-------------------------------GTATA.......................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGCTAG-GTTC--AAATGCTCAAGC----------.......................................................................................................................................................................................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................AACCGGGTACTTA----GATAAAG----------AAA-----A......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000001000000000000000000000000000000000000
..................................................................................................................................................................................TAAA------------------------------------------------CC----------------------------AAAAAATAA-----------------------------------------TTTAAA--A---------------------------------CCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................TTTCCCAAACCGGGTACTTA----GA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................TAAAG----------AAA-----ACATAAA------------------------------------------------CC----------------------------AAAAAATAA-----------------------------------------TT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000100000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................AA--A---------------------------------CCCAATATGT---------AGTATTAA-------------------------------GT..........................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000100000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................CAAT--C---------CATTATTGTAAAGCTAG-GTTC--AAA..........................................................................................................................................................................................................................................................................................................................................................2911.001000000000000000000000000000100000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................AAT--C---------CATTATTGTAAAGCTAG-G..................................................................................................................................................................................................................................................................................................................................................................2230.672001000000000000000000000000000000000000100000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................CAAT--C---------CATTATTGTAAAGCTAG-...................................................................................................................................................................................................................................................................................................................................................................2230.672000000000000000000000000000100000000000100000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAGC----------ATAGTATCAA-C-------AAA--T..............................................................................................................................................................................................................................................................................................................2130.672000000000000000000000000002000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................AAT--C---------CATTATTGTAAAGCTAG-...................................................................................................................................................................................................................................................................................................................................................................2130.331001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................CAAT--C---------CATTATTGTAAAGCCC.....................................................................................................................................................................................................................................................................................................................................................................2130.331000000000000000000000000000000010000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................CAAT--C---------CATTATTGTAAAGCTA.....................................................................................................................................................................................................................................................................................................................................................................2130.331001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................CAAT--C---------CATTATTGTAAAGCTAG-GTT................................................................................................................................................................................................................................................................................................................................................................2530.331001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTTCAAT--C---------CATTATTGTAAAGCTA.....................................................................................................................................................................................................................................................................................................................................................................2830.331000000000000000000000000000000010000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................CAAT--C---------CATTATTGTAAAGCTAG-GTC................................................................................................................................................................................................................................................................................................................................................................2530.331000000000000000000000000000000000100000000000000000000000000000
droGri2
TCCCTT--CCAGAA------------------------------------------------------------------------------------------------------------------------------------------------GC----CAG----------G--------CCGGACTGGCATGGCATAAGCCCCATTAATATGTATGG----------------------------TATTAAATGAGCAAAGC-----------------------------------------TTT-AAATGGCCAATTGGTTTGTCTGCATGTAA-----------------------------------------TATATTACTTTTTTTTATTGG-----------------------TCTT-----------------------------------------------TCAACTTAAAAGA-----C--CTATCAAGG-TA----------T----------------------------------------------------------------------------------TA-----------------------------AAAAAAAA-----CAAAA----TAAATA--------A----AA-------------------AAAA-----------T------------------------AAAC---------------------------------------------------------------ASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TATGTG--TTA-------------------------------------------------GGTGTGTGTGTGTGTGTGTGTGTGA---------------------------------------------------------------GCCAAAAAG----------AAG-----AGAAAGACAAA----------------------------------------------------------------------------AA-----G----------------------AACTATAAAT---------------------------------------------------------------------------------------TCTTCTACCTTGCAAA-----------------------CGGC-----------------------------------------------AAAACATAAAAAATATAC-AAA--------------------AA-----------------------------------------------------------------------------ACA--AAA----------------------AAA---AAAGCAAAAG---TAAGA------------------A----AC-------------------AGAA-----------AAAGCAC-----------TC-------AA---------------------------------------------------------------CSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
AAAAA-A-T-AATA-----------A-----------------------------------------------------------------------------------------------------------------------------------------------AA-------------------------------------------------------------------------------------------------------------------------------------TAAATAAATAAA--A----------------------------TAAATTTAAA----T-----------------TG--------------T--TA-----TCGCAA------------CGACATTTGG---TGCCATATAAT------------------------------------------AT----------------------------------------------------------------------------------------------------TA----------AAAAT------------------------AAAATAAATAATAA---TAAAA------------TAAAA-A----AA-------------------AAAT-----------A------------------------AAAT---------------------------------------------------------------ASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
CCGCG-ACG-GTTT----------GTTTT-ATC------------------G---CTCCGCGTATGCGTCCAT-------------------------------------------------------------ACCCCGCGCGTAGGAGGAAGCAGAG------------------AGGA-------------ACAA-------------------------GTGTTCGGCTGTTAGTGGCTGATCGAAGTTGA-A---------------------------------------------------------------------------------------------------A----T-----------------------------------------------------------TGT-------------------------------CACA---------G--------------------AGA-----T--CTAGCCTGG-TC---CAAAAGAA-----------------------------------------------------------------------------ACAAAAAAAAA-------------------------ATAGCAAGAA---TAAGA------------C-----A----AA-------------------AAAA-----------A------------------------AAAC---------------------------------------------------------------ASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................................................................................................................................................................................................................................................................................................................................................................T-----------------------------------------------------------TGT-------------------------------CACA---------G--------------------AGA-----T--CTAGCCTGG-........................................................................................................................................................................................................................................................................................................22100.505140000
.........................................................................................................................................................................................................................................................................................................................................................................T-----------------------------------------------------------TGT-------------------------------CACA---------G--------------------AGA-----T--CTAGCCTGG-TC---...................................................................................................................................................................................................................................................................................................24100.505050000
..................................................................................................................................................................................GGA-------------ACAA-------------------------GTGTTCGGCTGTTAGTGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2540.502000002
.........................................................................................................................................................................................................................................................................................................................................................................T-----------------------------------------------------------TGT-------------------------------CACA---------G--------------------AGA-----T--CTAGCCTGG-TC---C..................................................................................................................................................................................................................................................................................................25100.505140000
.........................................................................................................................................................................................................................................................................................................................................................................T-----------------------------------------------------------TGT-------------------------------CACA---------G--------------------AGA-----T--CTAGCCTGG-T.......................................................................................................................................................................................................................................................................................................23100.404040000
................................................................TGCGTCCAT-------------------------------------------------------------ACCCCGCGCGTAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2330.331010000
.................................................................GCGTCCAT-------------------------------------------------------------ACCCCGCGCGTAGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2430.331010000
................................................................TGCGTCCAT-------------------------------------------------------------ACCCCGCGCGTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2230.331010000
..........................TTT-ATC------------------G---CTCCGCGTATGCGTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2240.251010000
.................................................................................................................................................................................................................................................CTGATCGAAGTTGA-A---------------------------------------------------------------------------------------------------A----T-----------------------------------------------------------TGT-------------------------------C..............................................................................................................................................................................................................................................................................................................................................................2190.222200000
.........................................................................................................................................................................................................................................................................................................................................................................T-----------------------------------------------------------TGT-------------------------------CACA---------G--------------------AGA-----T--CTAGCCTG..........................................................................................................................................................................................................................................................................................................21100.202020000
...........................................................................................................................................................................................................................................TAGTGGCTGATCGAAGTTGA-......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2070.141010000
.........................................................................................................................................................................................................................................................................................................................................................................T-----------------------------------------------------------TGT-------------------------------CACA---------G--------------------AGA-----T--CTAGCCTGG-TC---CA.................................................................................................................................................................................................................................................................................................2690.111010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................GT-------------------------------CACA---------G--------------------AGA-----T--CTAGCCTGG-TC---CA.................................................................................................................................................................................................................................................................................................2490.111010000
.........................................................................................................................................................................................................................................................................................................................................................................T-----------------------------------------------------------TGT-------------------------------CACA---------G--------------------AGA-----T--CTAGCCTGG-TC---CAAA...............................................................................................................................................................................................................................................................................................2890.111010000
.........................................................................................................................................................................................................................................................................................................................................................................T-----------------------------------------------------------TGT-------------------------------CACA---------G--------------------AGA-----T--CTAGCCTGG-TC---CAA................................................................................................................................................................................................................................................................................................2790.111010000
.....................................................................................................................................................................................................................................................TCGAAGTTGA-A---------------------------------------------------------------------------------------------------A----T-----------------------------------------------------------TGT-------------------------------CACA---------G--------------------AGA-----.....................................................................................................................................................................................................................................................................................................................24100.101010000
.......................................................................................................................................................................................................................................................GAAGTTGA-A---------------------------------------------------------------------------------------------------A----T-----------------------------------------------------------TGT-------------------------------CACA---------G--------------------AGA-----T--CTAGC.............................................................................................................................................................................................................................................................................................................28100.101000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TGT-------------------------------CACA---------G--------------------AGA-----T--CTAGCCTGG-TC---C..................................................................................................................................................................................................................................................................................................24100.101010000
.....................................................................................................................................................................................................................................................TCGAAGTTGA-A---------------------------------------------------------------------------------------------------A----T-----------------------------------------------------------TGT-------------------------------CACA---------G--------------------AG...........................................................................................................................................................................................................................................................................................................................23100.101010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TGT-------------------------------CACA---------G--------------------AGA-----T--CTAGCCTGG-TC---...................................................................................................................................................................................................................................................................................................23100.101010000
.........................................................................................................................................................................................................................................................................................................................................................................T-----------------------------------------------------------TGT-------------------------------CACA---------G--------------------AGA-----T--CTAGCCTGG-A.......................................................................................................................................................................................................................................................................................................23100.101010000
..............................................................................................................................................................................................................................................................A-A---------------------------------------------------------------------------------------------------A----T-----------------------------------------------------------TGT-------------------------------CACA---------G--------------------AGA-----T--CTAGCCTGG-T.......................................................................................................................................................................................................................................................................................................26100.101010000
...........................................................................................................................................................................................................................................................TTGA-A---------------------------------------------------------------------------------------------------A----T-----------------------------------------------------------TGT-------------------------------CACA---------G--------------------AGA-----T--CTAGCC............................................................................................................................................................................................................................................................................................................25100.101010000
.............................................................................................................................................................................................................................................................GA-A---------------------------------------------------------------------------------------------------A----T-----------------------------------------------------------TGT-------------------------------CACA---------G--------------------AGA-----T--CTAG..............................................................................................................................................................................................................................................................................................................21100.101010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACA---------G--------------------AGA-----T--CTAGCCTGG-TC---C..................................................................................................................................................................................................................................................................................................21100.101010000
...............................TC------------------G---CTCCGCGTATGCGTCCAT-------------------------------------------------------------ACCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051010000
droAna3
TTTATT--AAAAAA------------------------------------------------------------------------------------------------------------------------------------------------AA----AAA----------GCTAATAAA----------------------------------------------------------------------------AT-----T----------------------AAAAACAAAG----------------------------------------------------------------------AACTCT-----------------ATTTAATAAAAA---AC---------AAT-------------------------------TACA---------AATC-------------TAAAATACAAAA-AAA---------------------------------------------------------------------------------------------------ATAAAAAA------A----------------AA---AAAATAAAAA---AAAAA------------------A----AA-------------------AAAA-----------AAAAAAA-----------AC-------AC---------------------------------------------------------------TSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAA------A----------------AA---AAAATAAAAA---AAAAA------------------A----AA-------------------AAAA-----------AAAAAA.......................................................................................36151.40210021900
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAAAA------A----------------AA---AAAATAAAAA---AAAAA------------------A----AA-------------------AAAA-----------AAA..........................................................................................3611.001000100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAA------A----------------AA---AAAATAAAAA---AAAAA------------------A----AA-------------------AAAA-----------AAAAAAA-----------...........................................................................36150.80120011100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA------A----------------AA---AAAATAAAAA---AAAAA------------------A----AA-------------------AAAA-----------AAAAAAA-----------A..........................................................................36150.67100001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAA------A----------------AA---AAAATAAAAA---AAAAA------------------A----AA-------------------AAAA-----------AAAAA........................................................................................36160.63100001000
......................................................................................................................................................................................TAAA----------------------------------------------------------------------------AT-----T----------------------AAAAACAAAG----------------------------------------------------------------------AACTCT-----------------ATT........................................................................................................................................................................................................................................................................................................................................................................................................................2620.501010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---AAAATAAAAA---AAAAA------------------A----AA-------------------AAA.........................................................................................................22200.102020000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA------A----------------AA---AAAATAAAAA---AAAAA------------------A----AA-------------------AAAA-----------AAAAAAA-----------A..........................................................................35160.061001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATAAAAA---AAAAA------------------A----AA-------------------AAAA-----------.............................................................................................21200.051010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATAAAAA---AAAAA------------------A----AA-------------------AAAA-----------AAAA.........................................................................................25200.051010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------------AA---AAAATAAAAA---AAAAA------------------A----.................................................................................................................................19200.051010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----AA-------------------AAAA-----------AAAAAAA-----------AC-------AC---------------------------------------------------------------T19200.051010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---AAAATAAAAA---AAAAA------------------A----AA-------------------AAAA-----------AAAAAAA-----------AC-------AA---------------------------------------------------------------.35200.051000100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAA-AAA---------------------------------------------------------------------------------------------------ATAAAAAA------A----------------AA---AAA.......................................................................................................................................................................21200.051010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAA---AAAAA------------------A----AA-------------------AAAA-----------AAAAAA.......................................................................................24200.051010000
droBip1
AAAAG-A-A-AAATA----------AA-------------------------------------------------------AAA---------------------------------------------------------------------------------------A----A----------------------------------------------------------------------------------------TAG-----------------------------------------CCTAAG--G---------------------------------T---------TTGAACTGAAGAATTTT-T--------------A--GG-----GCTTG---------AA--C---------TTTAGCTAAAAAATA-------A----------------------------AAC--------------TT---GAAC-T------------------------------------------------------------------------------------------------------T---------GAAAAAATAAAAAAAAGAATAA---AAAGT------------TAAAAAA----AT-------------------A-----------------------------------------TAATTAAGGTAAGGTTAAATTAAGGA--------------------AGG----------------ASizeHit CountTotal NormTotal
No Reads
droKik1
ATATTT--ATAG-T-----------T----------------------------------------------------------------------------------------------------------------TTAATATAGATAAAAAAAG----------AAA-----ATAATAATAAA----------------------------------------------------------------------------AA-----T----------------------AAAAATAAAA----------------A----------------------------------------AT-------------------AAAT---------------------AAAT------------AAT-------------------------------TATA---------AAAT-------------AAAAAAA--------------TAA-TT---AAAAATAA-----------------------------------------------------------------------------ATAAAA-------------------------TAAAAATAAAAATAA---AAAAA------------------------T-------------------AGAA-------AATAA----AA-----------ATA----------------------------------------------------ACA----------------TSizeHit CountTotal NormTotal
No Reads
droFic1
TATAT-G-TATGTATGCAAGAGATATATGTGTATGTGTTAGTGTGTGTGTTGTTTACCTGTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGCGTGTGTGTATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTTAATAATGTTACGCGCTTATCAAGCGGGTTTATCTGCCTGGCATTTATATAGTATACGTGAATGCCCTCGCCGCCGACAAAAG------CAATAATCGGAGGGATTCCAGACAAAAAAAAAACCAA---AAAAG------------------A----AA----------------------------------A----AA-----------AAAA-----CA---------------------------------------------------------------ASizeHit CountTotal NormTotal
No Reads
droEle1
TGTTAT--T-AAAA-----------T------------------------------------------------------------------------------------------------------------------------------------AT----AAA----------A--------T--------------------------------------------------------------------AAAATAAAA-----A--------------------------------------------------------------------------------------------AAGAATAGTGGATCTTT-T--------------A--TA-----ACATAA---------GCTT-------CACAATTTTAAACAAT-------------------------------------ATTACACA-----C--TTATTGAGA--------------------------------------------------------------------------------------------------------------------------TAAAAAAAAAACAAG---AAAAC------------------A----AT----------------------------------A----A----------------AGCAAAA---------------------------------------------------------------ASizeHit CountTotal NormTotal
No Reads
droRho1
TTTATG--TTAGAAA------------------------------------------------------------------------------------------------------------------------------------------------G----------------TA----CAAA--------------------------------------------TT----------------------------AAAAGACAAAAAGTGTTGTACCGGAATAGAAAATATATATAAAATAAATAAATAAA--A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----------------------------------------------------------------TAAATAAAAAACACTGTTAACAAAAAAAA------AAATAATAAAAACGAAACTGGAA---------------------------------------------------------------------A-----------A----AATCATCAAAT-G----AGA------------AAA-----------------------GCCAGTGCGAAGA----------------CSizeHit CountTotal NormTotal
No Reads
droBia1
TTGTTT--G-TTTT-----------T------------------------------------------------------------------------------------------------------------------------------------------ACA----------A--------T--------------------------------------------------------------------TAAATGGAAAAAAT-----------------------------------------TTTTAA--G---------------------------------TTCAACGTT-------------------TATT---------------------TTATGAC---------TTT-------------------------------TACA---------TTCTTTTAATATTAATACTAAAC-------AAA--------------------AT-----------------------------------------------------------------------------ACA--TTT----------------------TAA---AAATTAAAAGTAAAAGGTCCAATAAATA----------------------------------AAATGCCGCAG----A----AACGTTCTAGT-T----AGC------------ATA-C--------TTAAGATATG-------------AAA----------------TSizeHit CountTotal NormTotal
No Reads
droTak1
AAGTAT--G-TGTA-----------T----------------------------------GATGTATGTATATACATATATATTT---------------------------------------------------------------TATTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------AT--G-----------------------------------------------------------T-T--AAGAATC--------------------AC---------TTC-------------TCTATACTGCTTG-GTTC--ATTTACA----A------------AA---TAAAAT-----G--GTATTATTT------CAAAAGAA-----------------------------------------------------------------------------AC--------------------------------ATTAAATAAAAA---CAAAA------------CAAAAAA----GA-------------------ACAT-----------A----AAACTTATAGTTG----AGT------------TCT-T--------T----------------------GAA----------------TSizeHit CountTotal NormTotal
No Reads
droEug1
GTGTGT--G-AGTG-----------T------------------------------------------------TGGGAATGAA----------------------------------------------------------------------AAGAA------------------ATGG-------------GCAAGTGGAGAGGTTGATCGGCAGAAA-AG----------------------------TGA-AGATGTGAAGAGC-----------------------------------------TTT-AGATGAAGAACAACAACAAGTGCATGTGAATATT--------------------------------------------------------------------------------------------------------------------------------GAATTGACATCGAAGC-----T--CCGT---------------------------------------------------------------------------------------TA----------AAGAAAAA-------------------------ATAGCAAAAA---GCAAA------------T-----AAA--AA-------------------AAAG-----------C------------------------AAAC---------------------------------------------------------------ASizeHit CountTotal NormTotal
No Reads
dm3
TAAGT-A-A-AAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------A------------------------------------------------TCATTTAGTTATTGTATATTGATAATAATATA-T---------------------------------------------------------------------------------------------------A----T-------------------------------------------------------------------------------------------------------------------------AATAATATA-----T--ATTT----T-------CAAATAATA---------------------------------------------------------------------------ACAACAAAATA-------------------------ATAATAAAAA---TAATA------A-----------A----AA-------------------AAATATAG------------------------------------------CAACCGCCTTTTAGCAT---------------------AAG----------------ASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................................................................................................................................................................................................................................TAATAATATA-T---------------------------------------------------------------------------------------------------A----T-------------------------------------------------------------------------------------------------------------------------AATAATATA-----.....................................................................................................................................................................................................................................................................................................................2230.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AAGGA-A-T-GAGA----------------------------------------------------------------------------------------------------------------------------------------------------------ATA-----AA----TAAC----------------------------------------------------------------------------------------------------------------------------ATTGAA--G----------------------------AAGA---------------------TCATTTTTT--------------A--GA-----TCAGAA------------CCCTACAGGG---GAACATATAAT------------------------------------------AAT-----A--ATA---TAA-------------------------------------------------------------------------------------------------CA------A---------GAATAGACAGAAAAAAAAAAAA---AAAAA------------------C----T-----------------------A-----------A----AA-----------ATAT-----TA---------------------------------------------------------------ASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................................................................................................................................................................................................................................................................................................................TTTTT--------------A--GA-----TCAGAA------------CCCTACAGGG---GAA...............................................................................................................................................................................................................................................................................................................................................................................2712.00200000001010000000
........T-GAGA----------------------------------------------------------------------------------------------------------------------------------------------------------ATA-----AA----TAAC----------------------------------------------------------------------------------------------------------------------------ATTGAA--G----------------------------AAGA---------------------TCATT.............................................................................................................................................................................................................................................................................................................................................................................................................................................3011.00100000001000000000
.........................................................................................................................................................................TA-----AA----TAAC----------------------------------------------------------------------------------------------------------------------------ATTGAA--G----------------------------AAGA---------------------TCATTTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000010000000
...........................................................................................................................................................................................................................................................................................................................................................................................TT--------------A--GA-----TCAGAA------------CCCTACAGGG---GAACAT............................................................................................................................................................................................................................................................................................................................................................................2711.00100000000010000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAAAAAAAAAAAA---AAAA.........................................................................................................................................................19120.25300010000000002000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGAAAAAAAAAAAA---AAAAA------------------......................................................................................................................................2170.14100000000000001000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGAAAAAAAAAAAA---AAAA.........................................................................................................................................................2070.14100000000000001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAA---AAAAA------------------C----T-----------------------A-----------A----AA-----------A..........................................................................2190.11100000000000001000
...........................................................................................................................................................................................................................................................................................................................................................AAGA---------------------TCATTTTTT--------------A--GG-----.................................................................................................................................................................................................................................................................................................................................................................................................................16110.09100000000100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAA---AAAAA------------------C----T-----------------------A-----------A----AA-----------...........................................................................21120.08100000000000001000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGAAAAAAAAAAA.................................................................................................................................................................15200.05100000000000001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAAAAAAAAAA---AAAA.........................................................................................................................................................18200.05100000000000001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAAAAAAAAAA---AAAAA------------------......................................................................................................................................19200.05100000000000001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAA---AAAAA------------------C----T-----------------------A-----------A----A.......................................................................................20200.05100000000000001000
droSec2
TAGGG-A-A-TTTTG----------TA-------------------------------------------------------ACG---------------------------------------------------------------------------------------AAT------------------------------------------------T--------------------------------------------C-----------------------------------------AACGAG--G---------------------------------T---------AT--------------------------------------------------GA-CATT--C---------CACTTTTGAACAACTATT----TTTA---------TTGCTATTGAGAAAATACTGATTA-----T--TTTT--TAG-------------------------------------------------------------------------------------------------CA------A---------AA----------AAAAAAAAAA---AAAAA---AAAAACA--------A----AA-------------------T--A-----------A----TAATA-----T------TGCCAAA----------A-------T-TTGA--------------------ATA----------------TSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
ATATG-A-A-GAAAG----------AA-------------------------------------------------------ATAAACTAAACATTGAGAATTAAGTAATGGAATTACTCCAACAATTTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCA-----------------------CGCC-------AAAGTAAT--------T----------------------------ATCA--C---------------AAAT-ATGAAGAAAGAA-----------------------------------------------------------------------------AT----------------------------------AAACTAAAAA---CAAGA------------TAAAAAA----AC-------------------AGGT-------TGTAA----AG----------------------------AAACCGTTACCTAACAAA--------------------ATA----------------TSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................................................................TAATGGAATTACTCCAACAATTTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CC...................................................................................................................................................................................................................................................................................................................................................................................................................2670.43302100000000
..........................................................................................................TAATGGAATTACTCCAACAATTTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCA-----------------------..........................................................................................................................................................................................................................................................................................................................................................................................2860.17101000000000
droEre2
AAGTT-A-T-AGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------TTG-A--------------A--CA-----TCTTAA---------AATC-------TATGAGTACATATAGT----------------------------------GA---TAAAAA-----T--GCATTATGA-CA------------------------------------------------------------------------------------------------------A---------AA----------AAAAAAAA-----AAAAATAAATAAATAAATAAAAAAAAAAAGGAAAGGAAAGGAAAGGAAAAAAA-----------T----AAATA-----TAA----AGCCAAT---------------------------------------------------------------TSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/18/2015 at 12:26 AM