ID:

dmo_1412

 Coordinate:

scaffold_6498:2878652-2878802 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-27.8 -27.7 -27.6

Flybase annnotation

exon [dmoj_GLEANR_14025:2]; CDS [Dmoj\GI14010-cds]; intron [Dmoj\GI14010-in]

Repeatable elements

NameClassFamilyStrand
ISFUN1RCHelitron-
Homo6DNAhAT-Pegasus-
mature
  1. scaffold_1948:3039-3060 -
  2. scaffold_5620:1135-1156 -
  3. scaffold_6473:7130547-7130568 +
  4. scaffold_6473:13528454-13528475 +
  5. scaffold_6482:1752656-1752677 +
  6. scaffold_6496:23219798-23219819 -
  7. dmo_1366  scaffold_6498:1490350-1490371 +
  8. dmo_1412  scaffold_6498:2878686-2878707 -
  9. scaffold_6498:2955223-2955244 -
  10. scaffold_6500:30286922-30286943 -
  11. scaffold_6540:1059290-1059311 +
  12. scaffold_6540:1344962-1344983 +
  13. scaffold_6540:25360344-25360365 +
  14. scaffold_6541:123673-123694 +
  15. scaffold_6541:165536-165557 +
  16. scaffold_6541:189406-189427 +
  17. scaffold_6541:212960-212981 +
  18. dmo_2595  scaffold_6680:23887989-23888010 -
  19. scaffold_6680:24298588-24298609 +
  20. scaffold_6680:24360404-24360425 -
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TTGGAGAGGAATGGCTCAACGCAGAACGACACTGTTCACCTCGAGAGAAGGTAAAAATTAGCATTGGCAACAAAAAGTATAATAAGATCCAGACAGACGATTTCATGCACTCACGATTTGGATAAATATATATATCATTTATTATACCCTGAACCCATTGAAAATTGGGTATATCTGGGTGTAATGGTTTTGTGAAAAGTATGTAACAGGCAGAAGGAATCATCGCAGACCCCATAAAGTATGTATATTCT
**************************************************.............(((....)))...(((((.....(((((((.......................))))))).....))))).(((((((((((((((.(((((((........)))))...)).)))))))))))....))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V056
head
 M060
embryo
................CAACGCAGAACGACACTGTTCACCTC................................................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0
...........TGGCTCAACGCAGAACGACACT.......................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0
..........ATGGCTCAACGCAGAACGACACT.......................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0
...GAGAGGAATGGCTCAACGCAGAAC................................................................................................................................................................................................................................ 24 0 1 1.00 1 0 1 0
.............................................................................................................................................................................................TTGTGAAAAGTATGTAACAGG......................................... 21 0 20 0.10 2 2 0 0
.....................................................................................................................................................................................................AGTATGTAACAGGCAGAAGG.................................. 20 0 20 0.10 2 2 0 0
............................................................................................................AGTCACGATTTGGAGAAGT............................................................................................................................ 19 3 19 0.05 1 1 0 0
.............................................................................................................................................................................................TTGTGAAAAGTATGTAACAGGCA....................................... 23 0 20 0.05 1 1 0 0
...................................................................................................................................................................................................AAAGTATGTAACAGGCAGAAGGAATC.............................. 26 0 20 0.05 1 0 0 1
.................................................................................................................................................ACCCTGAACCCATTGAAAATTG.................................................................................... 22 0 20 0.05 1 1 0 0
..................ACGCAGAACGACAGGGCT....................................................................................................................................................................................................................... 18 3 20 0.05 1 1 0 0

Anti-sense strand reads

AACCTCTCCTTACCGAGTTGCGTCTTGCTGTGACAAGTGGAGCTCTCTTCCATTTTTAATCGTAACCGTTGTTTTTCATATTATTCTAGGTCTGTCTGCTAAAGTACGTGAGTGCTAAACCTATTTATATATATAGTAAATAATATGGGACTTGGGTAACTTTTAACCCATATAGACCCACATTACCAAAACACTTTTCATACATTGTCCGTCTTCCTTAGTAGCGTCTGGGGTATTTCATACATATAAGA
**************************************************.............(((....)))...(((((.....(((((((.......................))))))).....))))).(((((((((((((((.(((((((........)))))...)).)))))))))))....))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total V056
head
 M046
female body
 M060
embryo
.............................................................................................GTCGGCGAAAGTATGTGAGTGC........................................................................................................................................ 22 3 2 0.50 1 1 0 0
.....................................................................................................................................................................................................................TTCCTTAGTAGCGTCTGGGGTATTT............. 25 0 20 0.30 6 0 6 0
....................................................................................................................................................................................................................CTTCCTTAGTAGCGTCTGGGGTATTT............. 26 0 20 0.20 4 0 0 4
.....................................................................................................................................................................................................TCATACATTGTCCGTCTTCC.................................. 20 0 20 0.10 2 0 2 0
.........................................................................................................................................................................................................................TTAGTAGCGTCTGGGGTATTT............. 21 0 20 0.10 2 0 0 2

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6498:2878602-2878852 - dmo_1412 TTGGAGAGGAATGGCTCAACGCAGAAC---------------GA----------------------C------ACTGTTCACCTC-G-----AGAGAAGGTAAAA----------------------ATTAG-----------------------------------------------------------------------------------------CATT----------------------------------------------------------------------------------------------------------GGCAACAAAAAGTATAAT----------------------AAGATCCAGACAG------------ACGATT---------T------------------------------------------------------------------------------------------------CATGCACTCA-------CGATTTG-------------------------------GATAAATATA------TATA-------TCATTTATTATACCCTGAACCCATT------GAAAATTG---------GGTATAT--------------------------------------------------CT----------GGGTGTAATGGTTTTG-TGA-------AAAGTATGTAACAGGCAGAAGGAATCATCGCAGACCCCATAAA-G--TATGTATATTCT
droVir3 scaffold_12970:401984-402288 + dvi_12720 CTGGAGAGGAATGGCTCAACGCAGAAC---------------GA----------------------C------ACTGTTCACCTC-G-----AGAGAAGGTAAAA----------------------ATCAG-------------------------TTAGCAAAGTAACCTAATAGTTTCAAACTATATTACCT-----------------------------------------------------------------------------------------------------------------------TTG---------------------------------------------------------------ATGC------------A-GACTACATCCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAACTTAATTTTTATTTATCATG------AATTGAAACGTATACTAGGTTAGCAAATAACGGCCAAACGATAGCCTGAACAGAAGCATTTTTATACCCTCGCAGATTATATTATTGTCTATTATAATTTTGTCGT-------GAAATGTGTAACGCATAGAAGGAGACATCTTCGACCCCATAAA-GCTTATATATATTCT
droGri2 scaffold_14906:7065315-7065514 - AAATTATCG-------TTA-------A---------------GAATCTAA-----------------------ACTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAACGCGA---------------------------------------------------------------GCAT------------A-AATT---------A------------------------------------------------------------------------------------------------CATGTTGTAA-------GCAGTTG-------------------------------AATAA------ATTTATTTTACAATTTTTGTTTTTTATACCCTGAACCCATTGAAAATGGGTA----------------AA---------------------------------------------------AA----------GGGTATAATGGCTTTGTGCA-------AATGTATGCAACAGGCTGAAGGAAGCATCTCCGACCCCATAAA-G--TATATATATTCT
droWil2 scf2_1100000004939:41896-42122 + TGAAGAA-GAATA-CGCAA--AACTAG---------------GA----------------------A-ACTATACATTTTATTTCAG-----AGATATTGTAGAAATAGAAGAAGAACATAACATAA-------------------------------------------------------------------------------------------------------------------------------------AATATGAGAGGGACCCAGAGAGGGACCCAGACAC-------------------------------------------------------------------------------------------------------------------------AA----------------------------------------------------ATTTT---------------------------------------------------------------------GCGA------------TTGA-----AAATA----------------CATTATTTTTATACCCTT-----G--------------------------------------------------------------------------------CAGA----------GGGTGTTATAAAATTGGTCA-------AATGTTTGTAAGGCACAGAAGGAGAC------GGCCCCATAAA-G--TATATATATTTT
dp5 3:1229678-1229889 - AGTAG---------TCCAATGCAGAGC---------------AC----------------------C--------------------------------------------------------------------------------------------------------------------------------ATTCTCAC----------------------------TTCTGAAAACGAGCTG----ACTGATTTGAA-----------------------------------------AAATAA----------------------GGCGACAAAAAACAT------------------------------------------------------------CTAAGGCCTTGATGCTTG---------------------------------------------------------------------------------------CGCTCCA----------------------------------------------------------------------CATAATTAATTTTACCCGATACTTAAA----ATGAGTA-----------------T---------------------------------------------------TG----------GGGTATATTAGAAT---GTG-------AATGTGTGCAACGTCCAGAAGGAATCGTTACCGACTCCATAAA-G--TATATATATTTT
droPer2 scaffold_11:2733049-2733287 - AGAAC-------------------------------------CA----------------------T------ACTGTTGGAC----------------------------------------------------------------------------------------------------------------AAGAATGTGAATGTAAGTATAAGGATCATTCTCAGCTAAAATTT-------------------------------------------------------------------TAGAGCTTTAG---------------------------------------------------------------GCGT------------AATATT---------CCTTCC---------------------------------------------------ATCCCCTAGTAACAAATTTGGTTAGCATTC------------------------------------------------------------------------------------------CCGTAGTAATTATACCCGATACTCAAA----ATGATTA-----------------T---------------------------------------------------TG----------GGGTATATTATATTTGTGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAA-G--TATATATATTCT
droAna3 scaffold_12586:476006-476218 + GAGTCACGGCA-----CAGTGGATGAA---------------GA----------------------C------ACTA----------------AAGCAGGCAG------------------------------------------------------TACTCAAAATAACAA---------AAACTATATTATGT-----------------------------------------------------------------------------------------------------------------------GTT------------------------------------------------------ATGTTCCAAACAATAGTA------------T---------T------------------------------------------------------------------------------------------------------------------------TATTT----------------------TTAG-----AAATA----TATTTTAT---ATAATATTTTTATACCCTT-----G--------------------------------------------------------------------------------CAGA----------GGGTATTATAATTTTGGTCA-------AAAGTGTGCAACGCAGTGAAGGAGACATCTCCGAGCCTATAAA-G--TATATATATTCT
droBip1 scf7180000392033:73-278 + AATA-----------------CAAAACAAATTTATACAAAT-------------------------------------------T-A-----AGGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGAAGTGTAAAAGGCAATGGCAATAAAAGGCATAAG----------------------TAG------GTT------------------T---------T------------------------------------------------------------------------------------------------------------------------TATTTTTGGATAGATATTTGAAAATGTTTAA-----AAA---------------------TATATTTATACCCTT-----G--------------------------------------------------------------------------------CAGA----------GGGTATTATAATTTTGGTCA-------AAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAA-G--TATATATATTTT
droKik1 scf7180000302698:529129-529388 - TGGGGGCATAATATTAATA--AACAAC---------------AA----------------------A------ATT---AAACAC-GTGAAGAGGACAAACAA--------------------------------------------------AAATTAAGCAAAGTGAAAA-----------------------AAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATGCAGACA--------------------TATTTGTAATTCAATTTTCAA---------------------------------------------------------------------------------------TGTTTTAGTCTACTAATA---------------------------------------------------------ATATTTAATATTTATATCGAGTACCCAAA------GGGTTTAA---------GGTTTATT-ATACTATAAA--------------------------------------AA----------TGATAGCTTAGTAACAAGAA-------AATATATGTGACATGCAGAAGGAGACTTCTCTGACCCAACAAA-G--TATGTTTATTAT
droFic1 scf7180000453912:1426247-1426465 - CAAAAGCAGGAACATCCACATGCAC--------------ATTGG----------------------C------ACTGATCCTT----------------GCAA-------------------------------------------------------------------------------------------------------------------------------------AAA--------------------------------------------------------------------------------------------------------------TCACATTTAATAAAGAAGATAG-----------------------------------------------------TT---------TTAAAAGGGAGGATATTTATATGGAAC-------------------------------------------------------------------------------------------GAGTTTATAA-----AAATG------C---------ATTCGTTTTTATACCCTT-----GCA------GAGCA---------------------------------------------------------------------GA----------GGGTATTATGGTTTCAGTCA-------GAAGTTTGGAACCCAGTGAAGAAGACACCTCAGACCCCATAAA-G--TATATATACTCT
droEle1 scf7180000489173:14970-15182 + AGCT-----------------CAGAAC---------------AA----------------------G------ACTATTAACAG---------------------TTAGTAGGAGAAAATAACGTAAACGAACTTCAAGAAGAATATGTATGGTAAAGCGATACCGAAGAAC-----------------------AAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAC------ATAGATATGTCAGAACTTTATTTGTATACCCTT-----G--------------------------------------------------------------------------------CATA----------GGGTATTATAATTTCAGTCA-------GAAGTTTGCAACGCAGAAAAGGAGACGTTTCCGACCCTATAAA-G--TATATATATTCT
droRho1 scf7180000780109:25855-26083 + TTGGATGAGAAGGACCTGCAGGTGCAG---------------AA----------------------A------ATAGCTCGTGAA-A-----AGAGGGAGCAG----------------------------------------------------------------------------------------------------------------------------------------------------AC---CTTGGA------------------------------------------GCTA--------------------------AACGAAGCCTACAAG----------------------AAGATC------------------------------GATGGCATCG----------------------------------------------------AGGGT---------------------------------------------------------------------GAGT------------TTTA-----ATATA------CAT------TTAATGTTTTTATACCCGTTACTCGTA------GAGTA-----------------A---------------------------------------------------AA----------GGGTATATTGTATTCGTGCA-------AAAGTATGTAACAGCTAGAAGGAAGCGTTTCCGACCCTATGAA-G--TATATATATTCT
droBia1 scf7180000301299:36689-36936 + TCGGAAAAGAGTGGTACAATAATGGCC---------------GA----------------------C--------------------------------------------------------------------------------------------------------------------------------AACTTCACCAATGTATTCAGAA------------------------------------------------------GAGGTCGATATGGGTCTGGACGCAGAGCTTTAAGATAAAAACACTA---------------------------------------------------------------GTTT------------T-AA------TTATAGCTTTAATATCAG---------------------------------------------------------------------------------------TAATT-------------------------------------------------------------GATTTAT--TTAATTACTTTTTATACCCGTTACTCGTA------GAGTA-----------------A---------------------------------------------------AA----------GGGTATACTAAATTCGTCGG-------AAATTACGTAATAATTAGAAGGAAACATTTACGACCCCATAAT-G--TATATATATTCT
droTak1 scf7180000414032:4745-4956 + TTGGAAGGGGATGCCGTGA--AT-------------------CA----------------------A------ATTGTT---T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACATTACCATTTGTTTA-AACAATAT----AA-----------------------------------------------GGCTCGTGTAAGTAAGGGTAAGA-------------------------------------------------G-------------------------------AATCA------ATTGATTTGA--ATATTTAGTTTTTATACCCGTTACTCGTA------GAGTA-----------------A---------------------------------------------------AA----------GGGTATATTGTATTCGTGCA-------AAAGTATGTAACAGCTAGAAGGAAGCGTTTCCGACCCCATAAA-G--TATATATATTCT
droEug1 scf7180000408984:511226-511418 - TAAAAATGACCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT------------------------------------------------------------------------------------------------------------------------------------TCCAAAAAAAATAA-----------------------------------------------------TA---------AAAATACCGAAGCTTATTTTGTGCAGTTCATTTAGGCTAAAATAAAA--------------------------------------------ATC---------------------------------------------------------CTAATTAGTATTTATACCCGTTACTCGTA------GAGTA-----------------A---------------------------------------------------AA----------GGGTATACTAGATTCGTTGA-------AAAGTATGTAACAGATAGATGGAAGCTTTTGCGACCCTATAAA-G--TATATATATTCT
dm3 chr2L:21775752-21775947 - TATGACAGGACTGGATCACTGCAA---------------ATCGG----------------------T------CGAAATTTTT--------------AGGCGT----A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGAAAAGCATAAA----------------------AGCTTCCACAAAA------------A-----------------------------------------------CACATATTTGT-----------------------------------------------------------------------------------------------------------A-----TAAAG----------------CATGTAGTATAAACCCGTTACTCGTA------GAGTA-----------------A---------------------------------------------------AA----------GGGTATAATAGATTCGTTAG-------AAACTATTTATCAGGCATAATGGATCAT----------ATATATGTATATATATATTCT
droSim2 3l:23396151-23396351 + GGTAAAAATTATGTATTAG---------------------A-------------------------------------------T-A-----ATAG-------------------AATGCGTT------------------------------------------------------------------------ATAATCGA----------------------------CCCTATAAAGAATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------AA------------T---------------------------------------------------------------------------GGAATATTTAGGTATTTAATACATAAAAA-----------------------------------------AT----------------ATATAAGTTTTATACCCGTTAGTCGTA------GAGTA-----------------A---------------------------------------------------AA----------GGGTATACTAGATTC-TTAA-------AAAGTATGTAACAGGCAGAAGGAGGCGTTTCCGAATATATAAA-G--TATTTATATTCT
droSec2 scaffold_26:203435-203636 - AGAAAACGCGACAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGG----------------------------AACAGAAAACAGTAAATCAAAG---TTTGAA-----------------------------------------AATT----------------------------------------------------------------TAAATTTAAAAAA------------ATTATT---------TCCTTC---------------------------------------------------ATATAT---------------------------------------------------------------------AAAT--------------GA-----TAACA----------------CATGTTATTTATACCCGTTACTTGTA------GAGTA-----------------A---------------------------------------------------AA----------GGGTATACTAGATTCGTTGA-------AAAGTATGTAACTGGTAGAAGGAAGCGTTTCCGACCATATAAA-G--TATATATATTCT
droYak3 v2_chrUh_004:5726-5974 + TTGGATGTAAAAAATCCAAAGGAAAAG---------------AA----------------------A-------CC-----------------------------------------------------------------------------------------------------------------------ATTGTAGC----------------------------CACAACAA--------------------------------------------------------------------------------------------------------------TAGAATTAAAAGATTTAGATCG-----------------------------------------------------CTACTGGGAAGTTGAAGAAGAGAAAAATGATATCG----------AT------------------------------------------------------------------------------TCTAAAATCTGTGA-----AAATAAATTTATTTTAA---TTTATTTAATTATACCCGTTACTCGTA------GAGTA-----------------A---------------------------------------------------AA----------GGGTATACTAGATTCGTTGA-------AAAGTATGTAACAGGCAGAAGGAAGCGTTTCCGACCATATAAA-G--TACATATATTCT
droEre2 scaffold_4770:807077-807285 + AGAAGACGTAAGAAT-------------------------------TAAGAATTTAAGAAATAGGGAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAT--------------------------------------------------------------------------------------GGCCATTATACCTGGAGTATTAATGTATTCA-------AAAGATA-------------------------------TACAAAGCTC------TGTATCTTTTTTGGATTTTTATACCCATCAGTCGTA------GATTA---------------------------------------------------------------------AA----------GGGTATACTAGATTCGCTGA-------AAAGTATGTAACAGGTAGAAGGAAACGTTTCCGATCCCATATA-G--TATATATATTTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
TTGGAGAGGAATGGCTCAACGCAGAAC---------------GA----------------------C------ACTGTTCACCTC-G-----AGAGAAGGTAAAA----------------------ATTAG-----------------------------------------------------------------------------------------CATT----------------------------------------------------------------------------------------------------------GGCAACAAAAAGTATAAT----------------------AAGATCCAGACAG------------ACGATT---------T------------------------------------------------------------------------------------------------CATGCACTCA-------CGATTTG-------------------------------GATAAATATA------TATA-------TCATTTATTATACCCTGAACCCATT------GAAAATTG---------GGTATAT--------------------------------------------------CT----------GGGTGTAATGGTTTTG-TGA-------AAAGTATGTAACAGGCAGAAGGAATCATCGCAGACCCCATAAA-G--TATGTATATTCTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................CAACGCAGAAC---------------GA----------------------C------ACTGTTCACCTC-...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
...........TGGCTCAACGCAGAAC---------------GA----------------------C------ACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
..........ATGGCTCAACGCAGAAC---------------GA----------------------C------ACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
...GAGAGGAATGGCTCAACGCAGAAC---------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTG-TGA-------AAAGTATGTAACAGG............................................21200.102200000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATGTAACAGGCAGAAGG.....................................20200.102200000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTG-TGA-------AAAGTATGTAACAGGCA..........................................23200.051100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTATGTAACAGGCAGAAGGAATC.................................26200.051000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCTGAACCCATT------GAAAATTG---------...........................................................................................................................................................22200.051100000
droVir3
CTGGAGAGGAATGGCTCAACGCAGAAC---------------GA----------------------C------ACTGTTCACCTC-G-----AGAGAAGGTAAAA----------------------ATCAG-------------------------TTAGCAAAGTAACCTAATAGTTTCAAACTATATTACCT-----------------------------------------------------------------------------------------------------------------------TTG---------------------------------------------------------------ATGC------------A-GACTACATCCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAACTTAATTTTTATTTATCATG------AATTGAAACGTATACTAGGTTAGCAAATAACGGCCAAACGATAGCCTGAACAGAAGCATTTTTATACCCTCGCAGATTATATTATTGTCTATTATAATTTTGTCGT-------GAAATGTGTAACGCATAGAAGGAGACATCTTCGACCCCATAAA-GCTTATATATATTCTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTGTAACGCATAGAAGGAGACATC..............................28206.40128000000110100000000000000000108000800000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTGTAACGCATAGAAGGAGAC.................................25203.20640000000000003000000000000006100000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTGTAACGCATAGAAG......................................20201.90380000000000000000000000000003400000004000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTGTAACGCATAGAAGGAGACA................................26201.85370000000000000000000000000000000370000000000000000000000000000000
.................AACGCAGAAC---------------GA----------------------C------ACTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.001000000000000000000000000000000000000000000000000001000000000000
.........................AC---------------GA----------------------C------ACTGTTCACCTC-G-----AGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000000000000000000000000000000000000000000000000000000000000
..................ACGCAGAAC---------------GA----------------------C------ACTGTTCACCTC-...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
..........................C---------------GA----------------------C------ACTGTTCACCTC-G-----AGAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTGTAACGCATAGAAGGAG...................................23200.60120000000000000000000000000000001000000000000000000000000000000020
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGTGTAACGCATAGAAGGAGACA................................27200.408000000000000000000000000006000000000020000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTGTAACGCATAGAAGG.....................................21200.306000000000000000000000000000000000000060000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTGTAACGCATAGAAGGA....................................22200.204000000000000000000000000000000002000000200000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGTGTAACGCATAGAAGGAGA..................................25200.153000000000000000000001000000000000001000000000000000000000000010
..............................................................................TCACCTC-G-----AGAGAAGGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1980.131001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTAACGCATAGAAGGAGACATCT.............................26200.102000000000000000000000000000020000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGTAACGCATAGAAGGAGACATC..............................26200.102000002000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCATAGAAGGAGACATCTTCGAC........................26150.071000000000000000000000000001000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTAACGCATAGAAGGAGACATCTT............................26160.061000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACGCATAGAAGGAGACATCTTC...........................25160.061000000000000000000000000000100000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCATAGAAGGAGACATCTTC...........................22160.061000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCGT-------GAAATGTGTAACGCATAGA........................................26200.051000000000000000000000001000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT-------GAAATGTGTAACGCATAGAAGGAG...................................26200.051000000000000000000000000000000000001000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT-------GAAATGTGTAACGCATAGAAG......................................23200.051000000000000000000000000000001000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCATAGAAGGAGACATCTT............................22200.051000000000000100000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACGCATAGAAGGAGACATCTT............................23200.051000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGT-------GAAATGTGTAACGCATAGAAGG.....................................26200.051000000000000000000000000100000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCGT-------GAAATGTGTAACGCATAGA........................................25200.051000001000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTGTAACGCATAGAA.......................................19200.051000000000000000000000000000000100000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGT-------GAAATGTGTAACGCA............................................19200.051000000000000000000000000000010000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATAATTTTGTCGT-------GAAATGT....................................................22200.051000000000000000000000000001000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTAACGCATAGAAGGAGACATC..............................24200.051000000000000000000000000001000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTAACGCATAGAAGGAGACATC..............................25200.051000000000000000000000000100000000000000000000000000000000000000
droGri2
AAATTATCG-------TTA-------A---------------GAATCTAA-----------------------ACTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAACGCGA---------------------------------------------------------------GCAT------------A-AATT---------A------------------------------------------------------------------------------------------------CATGTTGTAA-------GCAGTTG-------------------------------AATAA------ATTTATTTTACAATTTTTGTTTTTTATACCCTGAACCCATTGAAAATGGGTA----------------AA---------------------------------------------------AA----------GGGTATAATGGCTTTGTGCA-------AATGTATGCAACAGGCTGAAGGAAGCATCTCCGACCCCATAAA-G--TATATATATTCTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TGAAGAA-GAATA-CGCAA--AACTAG---------------GA----------------------A-ACTATACATTTTATTTCAG-----AGATATTGTAGAAATAGAAGAAGAACATAACATAA-------------------------------------------------------------------------------------------------------------------------------------AATATGAGAGGGACCCAGAGAGGGACCCAGACAC-------------------------------------------------------------------------------------------------------------------------AA----------------------------------------------------ATTTT---------------------------------------------------------------------GCGA------------TTGA-----AAATA----------------CATTATTTTTATACCCTT-----G--------------------------------------------------------------------------------CAGA----------GGGTGTTATAAAATTGGTCA-------AATGTTTGTAAGGCACAGAAGGAGAC------GGCCCCATAAA-G--TATATATATTTTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........TA-CGCAA--AACTAG---------------GA----------------------A-ACTATACATTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.25502030
........................TAG---------------GA----------------------A-ACTATACATTTTATTTCAG-----AGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.10202000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTAAGGCACAGAAGGA....................................20150.07100100
.....................AACTAG---------------GA----------------------A-ACTATACATTTTATT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000
........................TAG---------------GA----------------------A-ACTATACATTTTATTTCAG-----AG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05101000
..AAGAA-GAATA-CGCAA--AACTAG---------------GA----------------------A-.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100010
..........ATA-CGCAA--AACTAG---------------GA----------------------A-ACTATACATT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05101000
...........TA-CGCAA--AACTAG---------------GA----------------------A-ACTATACATTTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.05101000
.............................................................................................................................................................................................................................................................................................CCCAGACAC-------------------------------------------------------------------------------------------------------------------------AA----------------------------------------------------ATTTT---------------------------------------------------------------------GCGA------------TTGA-----AAAA.............................................................................................................................................................................................................................28200.05101000
dp5
AGTAG---------TCCAATGCAGAGC---------------AC----------------------C--------------------------------------------------------------------------------------------------------------------------------ATTCTCAC----------------------------TTCTGAAAACGAGCTG----ACTGATTTGAA-----------------------------------------AAATAA----------------------GGCGACAAAAAACAT------------------------------------------------------------CTAAGGCCTTGATGCTTG---------------------------------------------------------------------------------------CGCTCCA----------------------------------------------------------------------CATAATTAATTTTACCCGATACTTAAA----ATGAGTA-----------------T---------------------------------------------------TG----------GGGTATATTAGAAT---GTG-------AATGTGTGCAACGTCCAGAAGGAATCGTTACCGACTCCATAAA-G--TATATATATTTTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTA-----------------T---------------------------------------------------TG----------GGGTATATTAGAA.........................................................................2222.5050200000120
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTA-----------------T---------------------------------------------------TG----------GGGTATATTAGAAA---.....................................................................2331.3340100000030
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTTACCCGATACTTAAA----ATGAGT........................................................................................................................................................................2611.0010000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTA-----------------T---------------------------------------------------TG----------GGGTATATTAGAA.........................................................................2120.5010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-----------------T---------------------------------------------------TG----------GGGTATATTAGAA.........................................................................1820.5010000100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA----ATGAGTA-----------------T---------------------------------------------------TG----------GGGTATATTAGAA.........................................................................2520.5010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGTA-----------------T---------------------------------------------------TG----------GGGTATATTAGAAA---.....................................................................2430.3310000100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAA----ATGAGTA-----------------T---------------------------------------------------TG----------GGGTAT................................................................................21100.2020200000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATACTTAAA----ATGAGTA-----------------T---------------------------------------------------TG----------GGG...................................................................................2480.1310100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATACTTAAA----ATGAGTA-----------------T---------------------------------------------------TG----------GGGTA.................................................................................2680.1310100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATACTTAAA----ATGAGTA-----------------T---------------------------------------------------TG----------GGGT..................................................................................2580.1310100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTAAA----ATGAGTA-----------------T---------------------------------------------------TG----------GGGTATAT..............................................................................24100.1010000000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAA----ATGAGTA-----------------T---------------------------------------------------TG----------GGGTA.................................................................................20110.0910100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTAAA----ATGAGTA-----------------T---------------------------------------------------TG----------GGGTA.................................................................................21110.0910100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-----------------T---------------------------------------------------TG----------GGGTATATTAGAAA---A....................................................................20150.0710100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----------------T---------------------------------------------------TG----------GGGTATATTAGAAA---A....................................................................19180.0610100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGTGCAACGTCCAGAAGGAAA..................................24200.0510100000000
droPer2
AGAAC-------------------------------------CA----------------------T------ACTGTTGGAC----------------------------------------------------------------------------------------------------------------AAGAATGTGAATGTAAGTATAAGGATCATTCTCAGCTAAAATTT-------------------------------------------------------------------TAGAGCTTTAG---------------------------------------------------------------GCGT------------AATATT---------CCTTCC---------------------------------------------------ATCCCCTAGTAACAAATTTGGTTAGCATTC------------------------------------------------------------------------------------------CCGTAGTAATTATACCCGATACTCAAA----ATGATTA-----------------T---------------------------------------------------TG----------GGGTATATTATATTTGTGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAA-G--TATATATATTCTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTCAAA----ATGATTA-----------------T---------------------------------------------------TG----------GG....................................................................................20180.061010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAAAAGTGGATGTGTGTAAC...............................................22200.051000001
droAna3
GAGTCACGGCA-----CAGTGGATGAA---------------GA----------------------C------ACTA----------------AAGCAGGCAG------------------------------------------------------TACTCAAAATAACAA---------AAACTATATTATGT-----------------------------------------------------------------------------------------------------------------------GTT------------------------------------------------------ATGTTCCAAACAATAGTA------------T---------T------------------------------------------------------------------------------------------------------------------------TATTT----------------------TTAG-----AAATA----TATTTTAT---ATAATATTTTTATACCCTT-----G--------------------------------------------------------------------------------CAGA----------GGGTATTATAATTTTGGTCA-------AAAGTGTGCAACGCAGTGAAGGAGACATCTCCGAGCCTATAAA-G--TATATATATTCTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGTGCAACGCAGTGAAGGAGACAT...............................27200.408080000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAACGCAGTGAAGGAGACATCTCCG..........................27200.255005000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGCAGTGAAGGAGACATC..............................21200.255000500
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGGTCA-------AAAGTGTGCAACGCAGT..........................................26200.153300000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCAGTGAAGGAGACATCTCCGAGCCT.....................2880.131010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCAGTGAAGGAGACATCTCCGAGCC......................2780.131010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCAGTGAAGGAGACATCTCCGAG........................25100.101010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAACGCAGTGAAGGAGACA................................22200.051001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCAGTGAAGGAGACATCTCCGAGA.......................26200.051010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------GGGTATTATAATTTTGGTCA-------AAAG.......................................................25200.051100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGCAACGCAGTGAAGGAGA..................................22200.051000100
droBip1
AATA-----------------CAAAACAAATTTATACAAAT-------------------------------------------T-A-----AGGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGAAGTGTAAAAGGCAATGGCAATAAAAGGCATAAG----------------------TAG------GTT------------------T---------T------------------------------------------------------------------------------------------------------------------------TATTTTTGGATAGATATTTGAAAATGTTTAA-----AAA---------------------TATATTTATACCCTT-----G--------------------------------------------------------------------------------CAGA----------GGGTATTATAATTTTGGTCA-------AAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAA-G--TATATATATTTTSizeHit CountTotal NormTotal
No Reads
droKik1
TGGGGGCATAATATTAATA--AACAAC---------------AA----------------------A------ATT---AAACAC-GTGAAGAGGACAAACAA--------------------------------------------------AAATTAAGCAAAGTGAAAA-----------------------AAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATGCAGACA--------------------TATTTGTAATTCAATTTTCAA---------------------------------------------------------------------------------------TGTTTTAGTCTACTAATA---------------------------------------------------------ATATTTAATATTTATATCGAGTACCCAAA------GGGTTTAA---------GGTTTATT-ATACTATAAA--------------------------------------AA----------TGATAGCTTAGTAACAAGAA-------AATATATGTGACATGCAGAAGGAGACTTCTCTGACCCAACAAA-G--TATGTTTATTATSizeHit CountTotal NormTotal
No Reads
droFic1
CAAAAGCAGGAACATCCACATGCAC--------------ATTGG----------------------C------ACTGATCCTT----------------GCAA-------------------------------------------------------------------------------------------------------------------------------------AAA--------------------------------------------------------------------------------------------------------------TCACATTTAATAAAGAAGATAG-----------------------------------------------------TT---------TTAAAAGGGAGGATATTTATATGGAAC-------------------------------------------------------------------------------------------GAGTTTATAA-----AAATG------C---------ATTCGTTTTTATACCCTT-----GCA------GAGCA---------------------------------------------------------------------GA----------GGGTATTATGGTTTCAGTCA-------GAAGTTTGGAACCCAGTGAAGAAGACACCTCAGACCCCATAAA-G--TATATATACTCTSizeHit CountTotal NormTotal
No Reads
droEle1
AGCT-----------------CAGAAC---------------AA----------------------G------ACTATTAACAG---------------------TTAGTAGGAGAAAATAACGTAAACGAACTTCAAGAAGAATATGTATGGTAAAGCGATACCGAAGAAC-----------------------AAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAC------ATAGATATGTCAGAACTTTATTTGTATACCCTT-----G--------------------------------------------------------------------------------CATA----------GGGTATTATAATTTCAGTCA-------GAAGTTTGCAACGCAGAAAAGGAGACGTTTCCGACCCTATAAA-G--TATATATATTCTSizeHit CountTotal NormTotal
No Reads
droRho1
TTGGATGAGAAGGACCTGCAGGTGCAG---------------AA----------------------A------ATAGCTCGTGAA-A-----AGAGGGAGCAG----------------------------------------------------------------------------------------------------------------------------------------------------AC---CTTGGA------------------------------------------GCTA--------------------------AACGAAGCCTACAAG----------------------AAGATC------------------------------GATGGCATCG----------------------------------------------------AGGGT---------------------------------------------------------------------GAGT------------TTTA-----ATATA------CAT------TTAATGTTTTTATACCCGTTACTCGTA------GAGTA-----------------A---------------------------------------------------AA----------GGGTATATTGTATTCGTGCA-------AAAGTATGTAACAGCTAGAAGGAAGCGTTTCCGACCCTATGAA-G--TATATATATTCTSizeHit CountTotal NormTotal
No Reads
droBia1
TCGGAAAAGAGTGGTACAATAATGGCC---------------GA----------------------C--------------------------------------------------------------------------------------------------------------------------------AACTTCACCAATGTATTCAGAA------------------------------------------------------GAGGTCGATATGGGTCTGGACGCAGAGCTTTAAGATAAAAACACTA---------------------------------------------------------------GTTT------------T-AA------TTATAGCTTTAATATCAG---------------------------------------------------------------------------------------TAATT-------------------------------------------------------------GATTTAT--TTAATTACTTTTTATACCCGTTACTCGTA------GAGTA-----------------A---------------------------------------------------AA----------GGGTATACTAAATTCGTCGG-------AAATTACGTAATAATTAGAAGGAAACATTTACGACCCCATAAT-G--TATATATATTCTSizeHit CountTotal NormTotal
No Reads
droTak1
TTGGAAGGGGATGCCGTGA--AT-------------------CA----------------------A------ATTGTT---T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACATTACCATTTGTTTA-AACAATAT----AA-----------------------------------------------GGCTCGTGTAAGTAAGGGTAAGA-------------------------------------------------G-------------------------------AATCA------ATTGATTTGA--ATATTTAGTTTTTATACCCGTTACTCGTA------GAGTA-----------------A---------------------------------------------------AA----------GGGTATATTGTATTCGTGCA-------AAAGTATGTAACAGCTAGAAGGAAGCGTTTCCGACCCCATAAA-G--TATATATATTCTSizeHit CountTotal NormTotal
No Reads
droEug1
TAAAAATGACCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT------------------------------------------------------------------------------------------------------------------------------------TCCAAAAAAAATAA-----------------------------------------------------TA---------AAAATACCGAAGCTTATTTTGTGCAGTTCATTTAGGCTAAAATAAAA--------------------------------------------ATC---------------------------------------------------------CTAATTAGTATTTATACCCGTTACTCGTA------GAGTA-----------------A---------------------------------------------------AA----------GGGTATACTAGATTCGTTGA-------AAAGTATGTAACAGATAGATGGAAGCTTTTGCGACCCTATAAA-G--TATATATATTCTSizeHit CountTotal NormTotal
No Reads
dm3
TATGACAGGACTGGATCACTGCAA---------------ATCGG----------------------T------CGAAATTTTT--------------AGGCGT----A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGAAAAGCATAAA----------------------AGCTTCCACAAAA------------A-----------------------------------------------CACATATTTGT-----------------------------------------------------------------------------------------------------------A-----TAAAG----------------CATGTAGTATAAACCCGTTACTCGTA------GAGTA-----------------A---------------------------------------------------AA----------GGGTATAATAGATTCGTTAG-------AAACTATTTATCAGGCATAATGGATCAT----------ATATATGTATATATATATTCTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................................T------CGAAATTTTT--------------AGGCGT----A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........CTGGATCACTGCAA---------------ATCGG----------------------T------C...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................TTT--------------AGGCGT----A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGAAAAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTA------GAGTA-----------------A---------------------------------------------------AA----------GGGTATAATAGATT........................................................................2621.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
TATGACAGGACTGGATCACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTATAAACCCGTTACTCGT...................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTA------GAGTA-----------------A---------------------------------------------------AA----------GGGTATAATAGAT.........................................................................2621.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------GAGTA-----------------A---------------------------------------------------AA----------GGGTATAATA............................................................................1950.6030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA------GAGTA-----------------A---------------------------------------------------AA----------GGGTATAATAGATT........................................................................2420.5010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAT----------ATATATGTATATATA......2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTCGTA------GAGTA-----------------A---------------------------------------------------AA----------GGGTATAAT.............................................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTCGTA------GAGTA-----------------A---------------------------------------------------AA----------GGGTATAATAGA..........................................................................2820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTA------GAGTA-----------------A---------------------------------------------------AA----------GGGTATAATAGAT.........................................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTA------GAGTA-----------------A---------------------------------------------------AA----------GGGTATAATAGATT........................................................................2720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTCGTA------GAGTA-----------------A---------------------------------------------------AA----------GGGTATAA..............................................................................2420.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----------------A---------------------------------------------------AA----------GGGTATAATAGATTCGTT....................................................................2230.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTCGTA------GAGTA-----------------A---------------------------------------------------AA----------GGGTATAATAGT..........................................................................2830.3310000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCGTA------GAGTA-----------------A---------------------------------------------------AA----------GGG...................................................................................18200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000100000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACTCGTA------GAGTA-----------------A---------------------------------------------------AA----------GGGT..................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTTACTCGTA------GAGTA-----------------A---------------------------------------------------AA----------GGGC..................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGTTACTCGTA------GAGTA-----------------A---------------------------------------------------AA----------GG....................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTCGTA------GAGTA-----------------A---------------------------------------------------AA----------GGGTA.................................................................................21200.0510000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGTTACTCGTA------GAGTA-----------------A---------------------------------------------------AA----------GGGT..................................................................................25200.0510000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCGTA------GAGTA-----------------A---------------------------------------------------AA----------GGGTAT................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTACTCGTA------GAGTA-----------------A---------------------------------------------------AA----------GG....................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACTCGTA------GAGTA-----------------A---------------------------------------------------AA----------GGGTA.................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCGTTACTCGTA------GAGTA-----------------A---------------------------------------------------..................................................................................................20200.0510000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GGTAAAAATTATGTATTAG---------------------A-------------------------------------------T-A-----ATAG-------------------AATGCGTT------------------------------------------------------------------------ATAATCGA----------------------------CCCTATAAAGAATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------AA------------T---------------------------------------------------------------------------GGAATATTTAGGTATTTAATACATAAAAA-----------------------------------------AT----------------ATATAAGTTTTATACCCGTTAGTCGTA------GAGTA-----------------A---------------------------------------------------AA----------GGGTATACTAGATTC-TTAA-------AAAGTATGTAACAGGCAGAAGGAGGCGTTTCCGAATATATAAA-G--TATTTATATTCTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AAAGTATGTAACAGGCAGAAGGA....................................242014.6529300000000251420000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AAAGTATGTAACAGGCAGAAGGAG...................................2581.3811000000000010010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA-------AAAGTATGTAACAGGCAGAAGGA....................................26161.252000000044930000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA------GAGTA-----------------A---------------------------------------------------AA----------GGGTATACTAGATT........................................................................24201.0020000000000020000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA------GAGTA-----------------A---------------------------------------------------AA----------GGGTATACTAGATTC-T.....................................................................2680.88700000000007000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGCAGAAGGAGGCG................................2350.60300000000003000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTA------GAGTA-----------------A---------------------------------------------------AA----------GGGTATACTAG...........................................................................24200.5010000000000010000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGCAGAAGGAGGC.................................2250.40200000000001100000
.....................................................................................................................TGCGTT------------------------------------------------------------------------ATAATCGA----------------------------CCCTATAAAGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2650.40200000000200000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTCGTA------GAGTA-----------------A---------------------------------------------------AA----------GGGTATACTAG...........................................................................2760.33200000000200000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGCAGAAGGAGG..................................2160.33200010000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------GAGTA-----------------A---------------------------------------------------AA----------GGGTATACTAGATTC-T.....................................................................2580.25200000000002000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGCAGA........................................15200.25500000000005000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTA------GAGTA-----------------A---------------------------------------------------AA----------GGGTATACTAGA..........................................................................25200.20400000000020020000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA------GAGTA-----------------A---------------------------------------------------AA----------GGGTATACT.............................................................................19200.20400000000004000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTAGATTC-TTAA-------A..........................................................1650.20100000000100000000
.....................................................................................................................................................................................................................................................T--------------------------------------------------------------------------------------------------------------------------------------------------------------------AA------------T---------------------------------------------------------------------------GGAATATTTAGGTATTTAATACATA............................................................................................................................................................................................................................................................................2950.20100000000010000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGCAGAAGGAGGCGTTTCCGAATA......................2650.20100000000100000000
............................................................................................................................................................................................................................................TAAAGAATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------AA------------T---------------------------------------------------------------------------GGAATATTTAGGTA.......................................................................................................................................................................................................................................................................................2750.20100000000100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGCAGAAGGAGGCGT...............................1850.20100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGCAGAA.......................................16200.20400000000004000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AAAGTATGTAACAGGCAGAAGGAGG..................................2660.17100000010000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACCCGTTAGTCGTA------GAGTA-----------------A---------------------------------------------------AA----------GGG...................................................................................2860.17100000001000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTCGTA------GAGTA-----------------A---------------------------------------------------AA----------GGGTATACTA............................................................................2760.17100000010000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTCGTA------GAGTA-----------------A---------------------------------------------------AA----------GGGTATACTAGA..........................................................................2960.17100000001000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-------AAAGTATGTAACAGGCAGAAGGA....................................25180.17300000012000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTCGTA------GAGTA-----------------A---------------------------------------------------AA----------GGGTATA...............................................................................2480.13100000010000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCCGTTAGTCGTA------GAGTA-----------------A---------------------------------------------------..................................................................................................2180.13110000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA------GAGTA-----------------A---------------------------------------------------AA----------GGGTATACTAGATTC-TT....................................................................2780.13100000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCCGTTAGTCGTA------GAGTA-----------------A---------------------------------------------------AA----------GGC...................................................................................26100.10100000000100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTA------GAGTA-----------------A---------------------------------------------------AA----------GGGTATA...............................................................................21100.10100000000100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTA-----------------A---------------------------------------------------AA----------GGGTATACTAG...........................................................................19200.10200000000002000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AAAGTATGTAACAGGCAGAAGGAGA..................................26140.07100000010000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGCAGAAGGAGGG.................................22150.07100001000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AAAGTATGTAACAGGCA..........................................18200.05100000001000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AAAGTATGTAACAGGCAGA........................................20200.05100000000100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTA------GAGTA-----------------A---------------------------------------------------AA----------GGGTATACTAGATT........................................................................25200.05100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA------GAGTA-----------------A---------------------------------------------------AA----------GGGTA.................................................................................15200.05100000000100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTA------GAGTA-----------------A---------------------------------------------------AA----------GGGTATACTA............................................................................21200.05100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTA------GAGTA-----------------A---------------------------------------------------AA----------GGGTATACTAGATT........................................................................26200.05100000010000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTA------GAGTA-----------------A---------------------------------------------------AA----------GGGTATACTAGATA........................................................................27200.05100010000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTA------GAGTA-----------------A---------------------------------------------------AA----------GGGTATACTAGA..........................................................................24200.05100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AAAGTATGTAACAGGCAGAA.......................................21200.05100000000000010000
droSec2
AGAAAACGCGACAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGG----------------------------AACAGAAAACAGTAAATCAAAG---TTTGAA-----------------------------------------AATT----------------------------------------------------------------TAAATTTAAAAAA------------ATTATT---------TCCTTC---------------------------------------------------ATATAT---------------------------------------------------------------------AAAT--------------GA-----TAACA----------------CATGTTATTTATACCCGTTACTTGTA------GAGTA-----------------A---------------------------------------------------AA----------GGGTATACTAGATTCGTTGA-------AAAGTATGTAACTGGTAGAAGGAAGCGTTTCCGACCATATAAA-G--TATATATATTCTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGA-------AAAGTATGTAACTGGTAGA........................................2711.0011000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGA-------AAAGTATGTAACTGG............................................2360.1711000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGA-------AAAGTATGTAAC...............................................20200.0511000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTAGATTCGTTGA-------AAAGT......................................................21200.0510010
droYak3
TTGGATGTAAAAAATCCAAAGGAAAAG---------------AA----------------------A-------CC-----------------------------------------------------------------------------------------------------------------------ATTGTAGC----------------------------CACAACAA--------------------------------------------------------------------------------------------------------------TAGAATTAAAAGATTTAGATCG-----------------------------------------------------CTACTGGGAAGTTGAAGAAGAGAAAAATGATATCG----------AT------------------------------------------------------------------------------TCTAAAATCTGTGA-----AAATAAATTTATTTTAA---TTTATTTAATTATACCCGTTACTCGTA------GAGTA-----------------A---------------------------------------------------AA----------GGGTATACTAGATTCGTTGA-------AAAGTATGTAACAGGCAGAAGGAAGCGTTTCCGACCATATAAA-G--TACATATATTCTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGA-------AAAGTATGTAACAGGCAGA........................................27203.0561000000000061
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATGTAACAGGCAGAAGGAAGCGT...............................26201.2024000000000024
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTA------GAGTA-----------------A---------------------------------------------------AA----------GGGTATACTAGAT.........................................................................25200.7014014000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAACAGGCAGAAGGAAGCGT...............................23200.6513000000000013
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATTATACCCGTTACTCGTA------GAGTA-----------------......................................................................................................................................................27200.45900000000009
..........................................................................................................................................................................................................................................AACAA--------------------------------------------------------------------------------------------------------------TAGAATTAAAAGATTTAGAT........................................................................................................................................................................................................................................................................................................................................................................................................................................2560.17100100000000
...........................................................................................................................................................................................................................................................................................................................................................................TTAGATCG-----------------------------------------------------CTACTGGGAAGTTGAAGAA..............................................................................................................................................................................................................................................................................................................................................................2780.13101000000000
..................AAGGAAAAG---------------AA----------------------A-------CC-----------------------------------------------------------------------------------------------------------------------ATTGTAGC----------------------------CAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25120.08101000000000
...............CCAAAGGAAAAG---------------AA----------------------A-------CC-----------------------------------------------------------------------------------------------------------------------ATTGTAGC----------------------------CAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28120.08101000000000
..................AAGGAAAAG---------------AA----------------------A-------CC-----------------------------------------------------------------------------------------------------------------------ATTGTAGC----------------------------CACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26120.08101000000000
................CAAAGGAAAAG---------------AA----------------------A-------CC-----------------------------------------------------------------------------------------------------------------------ATTGTAGC----------------------------C.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25130.08100100000000
................CAAAGGAAAAG---------------AA----------------------A-------CC-----------------------------------------------------------------------------------------------------------------------ATTGTAGC----------------------------CC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26130.08100100000000
..................AAGGAAAAG---------------AA----------------------A-------CC-----------------------------------------------------------------------------------------------------------------------ATTGTAGC----------------------------CAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25130.08100100000000
..........................................AA----------------------A-------CC-----------------------------------------------------------------------------------------------------------------------ATTGTAGC----------------------------CACAACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20140.07100100000000
.........................................................................................................................................................................................................................................................................................................................................................................ATTTAGATCG-----------------------------------------------------CTACTGGGAAG......................................................................................................................................................................................................................................................................................................................................................................21140.07100100000000
....................................................................................................................................................................................................................................................................................................................................................................AAAAGATTTAGATCG-----------------------------------------------------CTACTGGG.........................................................................................................................................................................................................................................................................................................................................................................23160.06101000000000
.............ATCCAAAGGAAAAG---------------AA----------------------A-------CC-----------------------------------------------------------------------------------------------------------------------ATTGTAGC----------------------------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27170.06101000000000
.........AAAAATCCAAAGGAAAAG---------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100100000000
.......TAAAAAATCCAAAGGAAAAG---------------AA----------------------A-------CC-----------------------------------------------------------------------------------------------------------------------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTCGTTGA-------AAAGTATG...................................................19200.05101000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAATTATACCCGTTACTCGTA------GAG.........................................................................................................................................................................26200.05101000000000
droEre2
AGAAGACGTAAGAAT-------------------------------TAAGAATTTAAGAAATAGGGAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAT--------------------------------------------------------------------------------------GGCCATTATACCTGGAGTATTAATGTATTCA-------AAAGATA-------------------------------TACAAAGCTC------TGTATCTTTTTTGGATTTTTATACCCATCAGTCGTA------GATTA---------------------------------------------------------------------AA----------GGGTATACTAGATTCGCTGA-------AAAGTATGTAACAGGTAGAAGGAAACGTTTCCGATCCCATATA-G--TATATATATTTTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................................................ATAGGGAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAT--------------------------------------------------------------------------------------GGCCATT...........................................................................................................................................................................................................................................................................................................2011.0010100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCCATCAGTCGTA------GATTA---------------------------------------------------------------------AA----------GGGT..................................................................................2711.0010000100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATACTAGATTCGCTGA-------...........................................................18150.0710000010

Generated: 05/18/2015 at 12:26 AM