ID:

dmo_1400

 Coordinate:

scaffold_6498:2432154-2432321 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-37.7 -37.4 -37.4

Flybase annnotation

exon [dmoj_GLEANR_14036:2]; CDS [Dmoj\GI14016-cds]; exon [dmoj_GLEANR_14036:1]; CDS [Dmoj\GI14016-cds]; intron [Dmoj\GI14016-in]

No Repeatable elements found

mature
  1. scaffold_6482:1422354-1422375 -
  2. dmo_1400  scaffold_6498:2432275-2432296 -
star
  1. dmo_1399  scaffold_6498:2426760-2426781 -
  2. dmo_1400  scaffold_6498:2432180-2432201 -

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TGCAGCGGAATCGCGCCGAAGGCTCTGAGCGTTATACGCCAGAGTCTGACGTAAGAAACCGCCTGCACCCAAGAATCTTACCGTAGCCTGGCGAGAGTCACACAACCCGATTCTGAGCGTTATACGCCAGAGCCGGCTGGCAATAATGGTCAGTGTGGCTACGCTTCGAGAGTTAGTTTGCTTTCCGTGTCGTCTGGAATGGGCGCTGCCAACTCTAGGCACGGAGCAGCGGAGTCACGCCGAGGTCCTCTGAGCGTTATACGCCAGA
***************************************************************************......(((((((((((....))))......(((.(((((.((((...))))))))).)))(((((.......)))))...)))))))....((((((......)))))).......**************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body		 V049
head
...........................................................................TCTTACCGTAGCCTGGCGAGAG........................................................................................................................................................................... 22 0 2 1.50 3 3 0 0 0
.......................................CAGAGTCTGACGTAAGAAACCGCC............................................................................................................................................................................................................. 24 0 3 1.00 3 3 0 0 0
...........................................................................TCTTACCGTAGCCTGGCGAGAGT.......................................................................................................................................................................... 23 0 2 1.00 2 1 1 0 0
...........................................................................TCTTACCGTAGCCTGGCGAGAGTC......................................................................................................................................................................... 24 0 2 1.00 2 2 0 0 0
..........................................................................................................................................................................AGTTAGTTTGCTTTCCGTGTCG............................................................................ 22 0 2 0.50 1 1 0 0 0
................................................................................................................................................................................TTTGCTTTCCGTGTCGTCTGGAATGG.................................................................. 26 0 2 0.50 1 1 0 0 0
..................................................................................................................GAGCGTTATACGCCAGAGCCGGC................................................................................................................................... 23 0 2 0.50 1 0 1 0 0
.........................................................................................................................................................................GAGTTAGTTTGCTTTCCGTGT.............................................................................. 21 0 2 0.50 1 1 0 0 0
............................................................................CTTACCGTAGCCTGGCGAGAG........................................................................................................................................................................... 21 0 2 0.50 1 1 0 0 0
.............................................................................TTACCGTAGCCTGGCGAGAGT.......................................................................................................................................................................... 21 0 2 0.50 1 1 0 0 0
.................................................................................................TCACACACCCCGCTTTTGAGCG..................................................................................................................................................... 22 3 2 0.50 1 0 0 0 1
....................................................................................................................GCGTTATACGCCAGAGCCGGCTGGCAAA............................................................................................................................ 28 1 2 0.50 1 1 0 0 0
.......................................................................................................................................................................................TCCGTGTCGTCTGGAATGGTC................................................................ 21 1 2 0.50 1 0 0 1 0
.......................................................................................................................................................................................TCCGTGTCGTCTGGAATGGGCGC.............................................................. 23 0 2 0.50 1 1 0 0 0
............................................................................CTTACCGTAGCCTGGCGAG............................................................................................................................................................................. 19 0 2 0.50 1 1 0 0 0
...........................................................................TCTTACCGTAGCCTGGCGAGA............................................................................................................................................................................ 21 0 2 0.50 1 0 1 0 0
..................................TACGCCAGAGTCTGACGTAAGAAACCG............................................................................................................................................................................................................... 27 0 3 0.33 1 1 0 0 0
...............................................GACGTAAGAAACCGCCTGCACC....................................................................................................................................................................................................... 22 0 3 0.33 1 1 0 0 0
.......................................CAGAGTCTGACGTAAGAAACCGCCTGC.......................................................................................................................................................................................................... 27 0 3 0.33 1 1 0 0 0
..................................TACGCCAGAGTCTGACGTAAGAAACCGCC............................................................................................................................................................................................................. 29 0 3 0.33 1 1 0 0 0
...............................................GACGTAAGAAACCGCCTGCACCCA..................................................................................................................................................................................................... 24 0 3 0.33 1 1 0 0 0
.......................................CGGAGTCTGACGTAAGAAACCGCC............................................................................................................................................................................................................. 24 1 3 0.33 1 0 1 0 0
.......................................CAGAGTCTGACGTAAGAAACCGC.............................................................................................................................................................................................................. 23 0 3 0.33 1 1 0 0 0
.................................................CGTAAGAAACCGCCTGCACCC...................................................................................................................................................................................................... 21 0 3 0.33 1 0 1 0 0
.................................................................................................................TGAGCGTTATACGCCAGAGCCGG.................................................................................................................................... 23 0 3 0.33 1 1 0 0 0
.......................................CAGAGTCTGACGTAAGAAACCGCCT............................................................................................................................................................................................................ 25 0 3 0.33 1 1 0 0 0
......................................................................................................................GTTATACGCCAGATCAAGCT.................................................................................................................................. 20 3 13 0.31 4 0 0 4 0
.........................TGAGCGTTATACGCCAGAGTCTG............................................................................................................................................................................................................................ 23 0 5 0.20 1 1 0 0 0
.........................TGAGCGTTATACGCCAGAGTCTGAAG......................................................................................................................................................................................................................... 26 1 5 0.20 1 1 0 0 0
.........................TGAGCGTTATACGCCAGAGTCTGACG......................................................................................................................................................................................................................... 26 0 5 0.20 1 1 0 0 0
..........................GAGCGTTATACGCCAGAGTCT............................................................................................................................................................................................................................. 21 0 9 0.11 1 1 0 0 0
..........................GAGCGTTATACGCCAGAGTCTGAA.......................................................................................................................................................................................................................... 24 1 9 0.11 1 1 0 0 0
..........................GAGCGTTATACGCCAGAGTCTGATC......................................................................................................................................................................................................................... 25 2 9 0.11 1 1 0 0 0
TGCAGCGGAATCGCGCCGAAGGCTCTC................................................................................................................................................................................................................................................. 27 1 9 0.11 1 1 0 0 0
TGCAGCGGAATCGCGCCGAAGG...................................................................................................................................................................................................................................................... 22 0 16 0.06 1 1 0 0 0
TGCAGCGGAATCGCGCCGAAG....................................................................................................................................................................................................................................................... 21 0 18 0.06 1 1 0 0 0
............................................................................................................GATCCTGAGCGTTATCGG.............................................................................................................................................. 18 3 20 0.05 1 1 0 0 0

Anti-sense strand reads

ACGTCGCCTTAGCGCGGCTTCCGAGACTCGCAATATGCGGTCTCAGACTGCATTCTTTGGCGGACGTGGGTTCTTAGAATGGCATCGGACCGCTCTCAGTGTGTTGGGCTAAGACTCGCAATATGCGGTCTCGGCCGACCGTTATTACCAGTCACACCGATGCGAAGCTCTCAATCAAACGAAAGGCACAGCAGACCTTACCCGCGACGGTTGAGATCCGTGCCTCGTCGCCTCAGTGCGGCTCCAGGAGACTCGCAATATGCGGTCT
****************************************************************************......(((((((((((....))))......(((.(((((.((((...))))))))).)))(((((.......)))))...)))))))....((((((......)))))).......*************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body		 V041
embryo
 V056
head
 V049
head
...............................................CTGAATTTTTTGGCGGACG.......................................................................................................................................................................................................... 19 2 4 30.75 123 95 0 28 0 0 0
........TTAGCGCGGCTTCCGAGACTCGCAATA......................................................................................................................................................................................................................................... 27 0 6 13.67 82 61 20 1 0 0 0
...............................................CTGAATTTTTTGGCGGACGCG........................................................................................................................................................................................................ 21 3 3 12.67 38 36 0 2 0 0 0
................................................TGAATTTTTTGGCGGACG.......................................................................................................................................................................................................... 18 2 8 9.63 77 67 0 10 0 0 0
..............................................TCTGAATTTTTTGGCGGACG.......................................................................................................................................................................................................... 20 3 10 8.70 87 71 0 16 0 0 0
..........AGCGCGGCTTCCGAGACTCGCAATA......................................................................................................................................................................................................................................... 25 0 6 8.33 50 37 13 0 0 0 0
................................................TGAATTTTTTGGCGGACGCG........................................................................................................................................................................................................ 20 3 5 7.60 38 31 0 7 0 0 0
.............................................................GGACGTGGGTTCTTAGAATGGCAT....................................................................................................................................................................................... 24 0 1 7.00 7 7 0 0 0 0 0
.........TAGCGCGGCTTCCGAGACTCGCAATA......................................................................................................................................................................................................................................... 26 0 6 6.50 39 21 17 0 1 0 0
............................................................CGGACGTGGGTTCTTAGAATGGCAT....................................................................................................................................................................................... 25 0 1 5.00 5 3 2 0 0 0 0
...............................................CTGAATTTTTTGGCGGACGC......................................................................................................................................................................................................... 20 3 14 3.79 53 45 0 8 0 0 0
...............................................CTGAATTTTTTGGCGGAC........................................................................................................................................................................................................... 18 2 4 3.50 14 14 0 0 0 0 0
...........GCGCGGCTTCCGAGACTCGCAATA......................................................................................................................................................................................................................................... 24 0 6 2.33 14 9 4 0 0 1 0
.....................CGAGACTCGCAATATGCGGTCTCAGACT........................................................................................................................................................................................................................... 28 0 4 2.25 9 3 6 0 0 0 0
...........................................................GCGGACGTGGGTTCTTAGAATGGCAT....................................................................................................................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0
............CGCGGCTTCCGAGACTCGCAATA......................................................................................................................................................................................................................................... 23 0 6 1.83 11 3 8 0 0 0 0
............................................AGTCTGAATTTTTTGGCGGACG.......................................................................................................................................................................................................... 22 3 3 1.67 5 5 0 0 0 0 0
........TTAGCGCGGCTTCCGAGACTCGCAAT.......................................................................................................................................................................................................................................... 26 0 6 1.50 9 8 1 0 0 0 0
..............................................................................................................................GGTCTCGGCCGACCGTTATTACCAGT.................................................................................................................... 26 0 2 1.50 3 3 0 0 0 0 0
..............................................TCTGAATTTTTTGGCGGAC........................................................................................................................................................................................................... 19 3 20 1.45 29 27 0 2 0 0 0
...............................................CTGAATTCTTTGGCGGACGC......................................................................................................................................................................................................... 20 2 3 1.00 3 1 0 2 0 0 0
...........................................................GCGGACGTGGGTTCTTAGAATGGC......................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................TCTCGGCCGACCGTTATTACCAGT.................................................................................................................... 24 0 2 1.00 2 2 0 0 0 0 0
.................................................................GTGGGTTCTTAGAATGGCATCG..................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0
........................GACTCGCAATATGCGGTCTCAGACT........................................................................................................................................................................................................................... 25 0 4 1.00 4 3 1 0 0 0 0
..............................................TCTGAATTCTTTGGCGGACGC......................................................................................................................................................................................................... 21 3 4 1.00 4 3 0 1 0 0 0
.........................................................................................................................................................................................................................CCGTGCCTCGTCGCCTCAGTGCGGCT......................... 26 0 1 1.00 1 1 0 0 0 0 0
.......................AGACTCGCAATATGCGGTCTCAGACT........................................................................................................................................................................................................................... 26 0 4 1.00 4 4 0 0 0 0 0
............................................AGTCTGAATTTTTTGGCGGA............................................................................................................................................................................................................ 20 3 6 1.00 6 6 0 0 0 0 0
..........................................................GGCGGACGTGGGTTCTTAGAATGGCAT....................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
............................................................CGGACGTGGGTTCTTAGAATGGCAG....................................................................................................................................................................................... 25 1 1 1.00 1 0 1 0 0 0 0
..................................................................TGGGTTCTTAGAATGGCAT....................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0
...............................................................................................................................GTCTCGGCCGACCGTTATTACCAGT.................................................................................................................... 25 0 2 1.00 2 2 0 0 0 0 0
.....................................................................................................................................................AGTCACACCGATGCGAAGCTCTCAAT............................................................................................. 26 0 2 1.00 2 2 0 0 0 0 0
.................................................GAATTTTTTGGCGGACGCG........................................................................................................................................................................................................ 19 3 20 0.80 16 6 0 10 0 0 0
.....................................................................................................TGTTGGGCTAAGACTCGCAATATGC.............................................................................................................................................. 25 0 3 0.67 2 2 0 0 0 0 0
........................................................................................................TGGGCTAAGACTCGCAATATGCGGT........................................................................................................................................... 25 0 3 0.67 2 2 0 0 0 0 0
...............................................CTGAATTCTTTGGCGGACG.......................................................................................................................................................................................................... 19 1 3 0.67 2 2 0 0 0 0 0
............................................AGTCTGAATTCTTTGGCGG............................................................................................................................................................................................................. 19 2 3 0.67 2 1 0 1 0 0 0
..........AGCGCGGCTTCCGAGACTCGCAAGA......................................................................................................................................................................................................................................... 25 1 6 0.67 4 0 4 0 0 0 0
...........................................TAGTCTGAATTCTTTGGCGGA............................................................................................................................................................................................................ 21 3 3 0.67 2 2 0 0 0 0 0
.........TAGCGCGGCTTCCGAGACTCGCAAGA......................................................................................................................................................................................................................................... 26 1 6 0.67 4 0 4 0 0 0 0
.........................ACTCGCAATATGCGGTCTCAGACT........................................................................................................................................................................................................................... 24 0 5 0.60 3 3 0 0 0 0 0
...........................................TAGTCTGAATTCTTTGGCGG............................................................................................................................................................................................................. 20 3 7 0.57 4 4 0 0 0 0 0
...............................................................................................................................................................................CAAACGAAAGGCACAGCAGACCTTAC................................................................... 26 0 2 0.50 1 1 0 0 0 0 0
........CTAGCGCGGCTTCCGAGACTCGCAATA......................................................................................................................................................................................................................................... 27 1 6 0.50 3 1 2 0 0 0 0
.........................................................................................................................................................................CCCAATCAAACGAAAGGCACAGCAGACC....................................................................... 28 1 2 0.50 1 1 0 0 0 0 0
........................................................................................................................................................................TCTCAATCAAACGAAAGGCACAGC............................................................................ 24 0 2 0.50 1 1 0 0 0 0 0
.................................................................................................AGTGTGTTGGGCTAAGACTCGCAATA................................................................................................................................................. 26 0 2 0.50 1 0 0 1 0 0 0
..............................................................................................................................................................GATGCGAAGCTCTCAATCAAACGA...................................................................................... 24 0 2 0.50 1 1 0 0 0 0 0
............................................................CGGACGTGGGTTCGTAGAATGGCAT....................................................................................................................................................................................... 25 1 2 0.50 1 0 0 0 1 0 0
.............................................................................................TCTCAGTGTGTTGGGCTAAGACTCGCAA................................................................................................................................................... 28 0 2 0.50 1 1 0 0 0 0 0
......................................................................................................................................................GTCACACCGATGCGAAGCTCTCAAT............................................................................................. 25 0 2 0.50 1 1 0 0 0 0 0
..........AGCGCGGCTTCCGAGACTCGCAATAT........................................................................................................................................................................................................................................ 26 0 6 0.50 3 2 1 0 0 0 0
........TTAGCGCGGCTTCCGAGACTCGCAAGA......................................................................................................................................................................................................................................... 27 1 6 0.50 3 0 3 0 0 0 0
..................................................................................................GTGTGTTGGGCTAAGACTCGCAATA................................................................................................................................................. 25 0 2 0.50 1 1 0 0 0 0 0
....................................................................................................................................................................AAGCTCTCAATCAAACGAAAGGCACAGCA........................................................................... 29 0 2 0.50 1 1 0 0 0 0 0
............................................................................................................................................................CCGATGCGAAGCTCTCAATCAAG......................................................................................... 23 1 2 0.50 1 1 0 0 0 0 0
......................................................................................................................................................GTCACACCGATGCGAAGCTCTCAATCA........................................................................................... 27 0 2 0.50 1 1 0 0 0 0 0
..............................................................................................................................................................GATGCGAAGCTCTCAATCAAACGAA..................................................................................... 25 0 2 0.50 1 1 0 0 0 0 0
..........................................................................................CGCTCTCAGTGTGTTGGGCT.............................................................................................................................................................. 20 0 2 0.50 1 1 0 0 0 0 0
...................................................................................................................................................................GAAGCTCTCAATCAAACGAAAGGCA................................................................................ 25 0 2 0.50 1 1 0 0 0 0 0
.......................................................................................................................................................................CTCTCAATCAAACGAAAGGCACAGCA........................................................................... 26 0 2 0.50 1 0 1 0 0 0 0
..............................................................................................................................GGTCTCGGCCGACCGTTATTA......................................................................................................................... 21 0 2 0.50 1 1 0 0 0 0 0
.............................................................GGACGTGGGTTCGTAGAATGGCAT....................................................................................................................................................................................... 24 1 2 0.50 1 1 0 0 0 0 0
....................................................................................................................................................................AAGCTCTCAATCAAACGAAAGGCA................................................................................ 24 0 2 0.50 1 1 0 0 0 0 0
....................................................................................................................................GGCCGACCGTTATTACCAGTCACA................................................................................................................ 24 0 2 0.50 1 1 0 0 0 0 0
................................................................................................................................................................TGCGAAGCTCTCAATCAAACGAAAGGCA................................................................................ 28 0 2 0.50 1 1 0 0 0 0 0
................................................................................................................................TCTCGGCCGACCGTTATTACCAGTCAC................................................................................................................. 27 0 2 0.50 1 1 0 0 0 0 0
..........................CTCGCAATATGCGGTCTCAGACT........................................................................................................................................................................................................................... 23 0 9 0.44 4 4 0 0 0 0 0
............................................AGTCTGAATTTTTTGGCGG............................................................................................................................................................................................................. 19 3 14 0.43 6 6 0 0 0 0 0
..........AGCGCGGCTTCCGAGACTCGCAATATG....................................................................................................................................................................................................................................... 27 0 5 0.40 2 2 0 0 0 0 0
............CGCGGCTTCCGAGACTCGCAATATGC...................................................................................................................................................................................................................................... 26 0 5 0.40 2 1 1 0 0 0 0
...............................................CTGAATTATTTGGCGGACG.......................................................................................................................................................................................................... 19 2 3 0.33 1 1 0 0 0 0 0
................................................................................................................................................CTACCAGTCACACCGATGCGAAGCTCT................................................................................................. 27 1 3 0.33 1 1 0 0 0 0 0
..............................................TCTGAATTCTTTGGCGGACG.......................................................................................................................................................................................................... 20 2 3 0.33 1 1 0 0 0 0 0
.......CTTAGCGCGGCTTCCGAGACTCGCAATA......................................................................................................................................................................................................................................... 28 0 6 0.33 2 2 0 0 0 0 0
............CGCGGCTTCCGAGACTCGCAAGA......................................................................................................................................................................................................................................... 23 1 6 0.33 2 0 2 0 0 0 0
.....................................................................................................TGTTGGGCTAAGACTCGCAATA................................................................................................................................................. 22 0 3 0.33 1 0 1 0 0 0 0
....................................................................................................GTGTTGGGCTAAGACTCGCAATATG............................................................................................................................................... 25 0 3 0.33 1 0 1 0 0 0 0
...........................................CAGTCTGAATTTTTTGGCGGAC........................................................................................................................................................................................................... 22 3 3 0.33 1 1 0 0 0 0 0
................................................TGAATTCTTTGGCGGACGC......................................................................................................................................................................................................... 19 2 3 0.33 1 1 0 0 0 0 0
.....................................................................................................TGTTGGGCTAAGACTCGCAATATG............................................................................................................................................... 24 0 3 0.33 1 0 1 0 0 0 0
..........AGCGCGGCTTCCGAGACTCGCAAT.......................................................................................................................................................................................................................................... 24 0 6 0.33 2 2 0 0 0 0 0
.............GCGGCTTCCGAGACTCGCAATA......................................................................................................................................................................................................................................... 22 0 6 0.33 2 0 2 0 0 0 0
................................................TGAATTCTTTGGCGGACGCG........................................................................................................................................................................................................ 20 2 3 0.33 1 1 0 0 0 0 0
.....................................................................................................CGTTGGGCTAAGACTCGCAATA................................................................................................................................................. 22 1 3 0.33 1 0 1 0 0 0 0
...............................................CTGAATTCTTTGGCGGACGCGA....................................................................................................................................................................................................... 22 3 3 0.33 1 1 0 0 0 0 0
...............................................CTGAATTCTTTGGCGGACGCG........................................................................................................................................................................................................ 21 2 3 0.33 1 1 0 0 0 0 0
............................................AGTCTGAATTCTTTGGCGGACGCG........................................................................................................................................................................................................ 24 3 3 0.33 1 1 0 0 0 0 0
...................................TGCGGTCTCAGACTGCATTCTTTGGC............................................................................................................................................................................................................... 26 0 3 0.33 1 0 1 0 0 0 0
.....................................................................................................TGTTGGGCTAAGACTCGCAATATC............................................................................................................................................... 24 1 3 0.33 1 1 0 0 0 0 0
.............................................GTCTGAATTCTTTGGCGGACGCG........................................................................................................................................................................................................ 23 3 3 0.33 1 1 0 0 0 0 0
................................................TGAATTTTTTGGCGGACGC......................................................................................................................................................................................................... 19 3 20 0.30 6 0 0 6 0 0 0
.............................................GTCTGAATTTTTTGGCGGACG.......................................................................................................................................................................................................... 21 3 4 0.25 1 1 0 0 0 0 0
...............................................................................................TCAGTGGGTTGGGTTAAG........................................................................................................................................................... 18 2 4 0.25 1 0 0 1 0 0 0
................................................TGAATTCTTTGGCGGACGCGA....................................................................................................................................................................................................... 21 3 4 0.25 1 1 0 0 0 0 0
.....................CGAGACTCGCAATATGTGGTCTCAGACT........................................................................................................................................................................................................................... 28 1 4 0.25 1 1 0 0 0 0 0
.......................AGACTCGCAACATGCGGTCTCAGACT........................................................................................................................................................................................................................... 26 1 4 0.25 1 1 0 0 0 0 0
.................................................GAATTCTTTGGCGGACGC......................................................................................................................................................................................................... 18 2 4 0.25 1 1 0 0 0 0 0
......................AAGACTCGCAATATGCGGTCTCAGACT........................................................................................................................................................................................................................... 27 1 4 0.25 1 1 0 0 0 0 0
..............................................TCTGAATTGTTTGGCGGACG.......................................................................................................................................................................................................... 20 3 4 0.25 1 1 0 0 0 0 0
..............CGGCTTCCGAGACTCGCAATATG....................................................................................................................................................................................................................................... 23 0 5 0.20 1 0 1 0 0 0 0
............CGCGGCTTCCGAGACTCGCAATATG....................................................................................................................................................................................................................................... 25 0 5 0.20 1 0 1 0 0 0 0
.........................................................................................................GGGCTAAGACTCGCAATATGCGGT........................................................................................................................................... 24 0 5 0.20 1 1 0 0 0 0 0
..............CGGCTTCCGAGACTCGCAATAGG....................................................................................................................................................................................................................................... 23 1 5 0.20 1 0 1 0 0 0 0
.............................................GTCTGAATTTTTTGGCGGA............................................................................................................................................................................................................ 19 3 20 0.20 4 3 0 1 0 0 0
..............CGGCTTCCGAGACTCGCAATATGCGGT................................................................................................................................................................................................................................... 27 0 5 0.20 1 0 1 0 0 0 0
.........................................................................................................GGGCTAAGACTCGCAATATGC.............................................................................................................................................. 21 0 5 0.20 1 1 0 0 0 0 0
.........................ACTCGCAATATGCGGTCTCAGAC............................................................................................................................................................................................................................ 23 0 5 0.20 1 1 0 0 0 0 0
....CGCCTTAGCGCGGCTTCCGAGACT................................................................................................................................................................................................................................................ 24 0 10 0.20 2 1 1 0 0 0 0
....................CCGAGACTCGCAATATGCGGT................................................................................................................................................................................................................................... 21 0 6 0.17 1 0 1 0 0 0 0
.........TAGCGCGGCTTCCGAGACTCGCAAGT......................................................................................................................................................................................................................................... 26 2 6 0.17 1 0 1 0 0 0 0
............CGCGGCTTCCGAGACTCGCTATA......................................................................................................................................................................................................................................... 23 1 6 0.17 1 0 1 0 0 0 0
.................CTTCCGAGACTCGCAATATACGGT................................................................................................................................................................................................................................... 24 1 6 0.17 1 0 1 0 0 0 0
.......ATTAGCGCGGCTTCCGAGACTCGCAATA......................................................................................................................................................................................................................................... 28 1 6 0.17 1 0 1 0 0 0 0
..........AGCGCGGCTTCCGAGACTCGCAATT......................................................................................................................................................................................................................................... 25 1 6 0.17 1 0 1 0 0 0 0
..............CGGCTTCCGAGACTCGCAATA......................................................................................................................................................................................................................................... 21 0 6 0.17 1 1 0 0 0 0 0
........TTAGTTCGGCTTCCGAGACTCGCAATAC........................................................................................................................................................................................................................................ 28 3 6 0.17 1 0 1 0 0 0 0
.............GCGGCTTCCGAGACTCGCAATATCTAG.................................................................................................................................................................................................................................... 27 3 6 0.17 1 0 1 0 0 0 0
........TTAGCGCGGCTTCCGAGACTCGCAATAT........................................................................................................................................................................................................................................ 28 0 6 0.17 1 1 0 0 0 0 0
........CTAGCGCGGCTTCCGAGACTCGCAAGA......................................................................................................................................................................................................................................... 27 2 6 0.17 1 0 1 0 0 0 0
............CGCGGCTTCCGAGACTCGCAA........................................................................................................................................................................................................................................... 21 0 6 0.17 1 1 0 0 0 0 0
.........TAGCTCGGCTTCCGAGACTCGCAAGA......................................................................................................................................................................................................................................... 26 2 6 0.17 1 0 1 0 0 0 0
........TTAGCGCGGCTTCCGTGACTCGCAATA......................................................................................................................................................................................................................................... 27 1 6 0.17 1 1 0 0 0 0 0
................GCTTCCGAGACTCGCAATA......................................................................................................................................................................................................................................... 19 0 6 0.17 1 1 0 0 0 0 0
...........GCGCGGCTTCCGAGACTCGCAAGA......................................................................................................................................................................................................................................... 24 1 6 0.17 1 0 1 0 0 0 0
............CGCGGCTTCCGAGACTCGCAATAT........................................................................................................................................................................................................................................ 24 0 6 0.17 1 0 1 0 0 0 0
..........AGCGCGGCTTCCGAGACTCTCAATA......................................................................................................................................................................................................................................... 25 1 6 0.17 1 0 1 0 0 0 0
.......CTTGGCGCGGCTTCCGAGACTCGCAATA......................................................................................................................................................................................................................................... 28 1 6 0.17 1 0 1 0 0 0 0
..........AGCGCGGCTTCCGAGACTCGCTATA......................................................................................................................................................................................................................................... 25 1 6 0.17 1 0 1 0 0 0 0
..........AGCGCGGCTTCCGAGACTCGCAA........................................................................................................................................................................................................................................... 23 0 6 0.17 1 1 0 0 0 0 0
............CGCGGCTTCCGAGACTCGCAATAC........................................................................................................................................................................................................................................ 24 1 6 0.17 1 0 1 0 0 0 0
..............CGGCTTCCGAGACTCGCAAGA......................................................................................................................................................................................................................................... 21 1 6 0.17 1 0 1 0 0 0 0
...............GGCTTCCGAGACTCGCAATA......................................................................................................................................................................................................................................... 20 0 6 0.17 1 1 0 0 0 0 0
...................................TGCGGTCTCAGACTGCATTCT.................................................................................................................................................................................................................... 21 0 6 0.17 1 1 0 0 0 0 0
...................................................ATTCTTTGGCGGACGCGA....................................................................................................................................................................................................... 18 2 6 0.17 1 1 0 0 0 0 0
.....................................CGGTCTCAGACTGCATTCT.................................................................................................................................................................................................................... 19 0 6 0.17 1 1 0 0 0 0 0
........TTAGCGCTGCTTCCGAGACTCGCAAGA......................................................................................................................................................................................................................................... 27 2 6 0.17 1 0 1 0 0 0 0
........TTAGCGCGGCTTCCGAGACTCGCAATAC........................................................................................................................................................................................................................................ 28 1 6 0.17 1 1 0 0 0 0 0
........TTAGCGCTGCTTCCGAGACTCGCAATA......................................................................................................................................................................................................................................... 27 1 6 0.17 1 0 1 0 0 0 0
.........TAGCGCGGCTTCCGAGACTCGCAATT......................................................................................................................................................................................................................................... 26 1 6 0.17 1 0 1 0 0 0 0
..................................................AATTCTTTGGCGGACGCG........................................................................................................................................................................................................ 18 2 6 0.17 1 1 0 0 0 0 0
.......GTTAGCGCGGCTTCCGAGACTCGCAATA......................................................................................................................................................................................................................................... 28 1 6 0.17 1 1 0 0 0 0 0
...................................TGCGGTCTCAGACTGCATTC..................................................................................................................................................................................................................... 20 0 6 0.17 1 0 0 1 0 0 0
........TTAGCGCGGCTTCCGAGACTCGCAA........................................................................................................................................................................................................................................... 25 0 6 0.17 1 1 0 0 0 0 0
...................................................................................................TGTGGTGGGCTAAGGATC....................................................................................................................................................... 18 3 19 0.16 3 0 0 2 0 0 1
........TTAGCGCGGCTTCCGAGACTCGCA............................................................................................................................................................................................................................................ 24 0 7 0.14 1 1 0 0 0 0 0
.........TAGCGCGGCTTCCGACACTCGCAATA......................................................................................................................................................................................................................................... 26 1 7 0.14 1 0 1 0 0 0 0
........TTAGCGCGGTTTCCGAGACTCGCAATA......................................................................................................................................................................................................................................... 27 1 7 0.14 1 1 0 0 0 0 0
........TTAGCGCGGCTTCCGATACTCGCAATA......................................................................................................................................................................................................................................... 27 1 7 0.14 1 0 1 0 0 0 0
.........TAGCGCGGCTTCCGAGACTCGCA............................................................................................................................................................................................................................................ 23 0 7 0.14 1 1 0 0 0 0 0
.......TTTAGCGCGGCTTCCGAGACTCGCAATA......................................................................................................................................................................................................................................... 28 1 7 0.14 1 1 0 0 0 0 0
..................................................AATTCTTTGGCGGACGCGAG...................................................................................................................................................................................................... 20 3 8 0.13 1 0 0 1 0 0 0
ACGTCGCCTTAGCGCGGCTTCCGAGACT................................................................................................................................................................................................................................................ 28 0 9 0.11 1 1 0 0 0 0 0
............................CGCAATATGCGGTCTCAGACT........................................................................................................................................................................................................................... 21 0 9 0.11 1 1 0 0 0 0 0
..................................................................................................TTGTGTTGGGCTAGGAATC....................................................................................................................................................... 19 3 10 0.10 1 0 0 1 0 0 0
...............................................CTGAATTTTTCGGCGGACG.......................................................................................................................................................................................................... 19 3 20 0.10 2 2 0 0 0 0 0
...........................................................................................................................................................AACAATGCGCAGCTCTCAAT............................................................................................. 20 3 10 0.10 1 0 0 0 1 0 0
.......CTTAGCGCGGCTTCCGAGACTC............................................................................................................................................................................................................................................... 22 0 10 0.10 1 0 1 0 0 0 0
....CGCCTTAGCGCGGCTTCCGAGAC................................................................................................................................................................................................................................................. 23 0 10 0.10 1 1 0 0 0 0 0
...TCGCCTTAGCGCGGCTTCCGAGACT................................................................................................................................................................................................................................................ 25 0 10 0.10 1 1 0 0 0 0 0
........TTAGCGCGGCTTCCGAGAC................................................................................................................................................................................................................................................. 19 0 11 0.09 1 0 1 0 0 0 0
........TTAGCGCGGCTTCCGAGACTCG.............................................................................................................................................................................................................................................. 22 0 11 0.09 1 0 1 0 0 0 0
.........CAGCGCGGCTTCCGAGACTCGCAAGA......................................................................................................................................................................................................................................... 26 2 12 0.08 1 0 1 0 0 0 0
................................................TGAATTTTTTGGCGGAC........................................................................................................................................................................................................... 17 2 13 0.08 1 0 0 0 0 1 0
..............................GTTTATGCGGTCTCAGACTG.......................................................................................................................................................................................................................... 20 3 17 0.06 1 1 0 0 0 0 0
....................................................TTCTTTGGCGGACGCGAGC..................................................................................................................................................................................................... 19 3 18 0.06 1 1 0 0 0 0 0
...........................................TAGTCTGAATTCTTTGGCG.............................................................................................................................................................................................................. 19 3 20 0.05 1 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6498:2432104-2432371 - dmo_1400 TGCAGCGGAATCGCGCCGAAGGCTCTGAGCGTTATACGCCAGAGTCTGACGTAAGAAACCGCCTGCACCCAAGAATCTTACCGTAGCCTGGCGAGAGTCACACAACCCGATTCTGAGCGTTATACGCCAGAGCCGGCTGGCAATAATGGTCAGTGTGGCTACGCTTCGAGAGTTAGTTTGCTTTCCGTGTCGTCTGGAATGGGCGCTGCCAACTCTAGGCACGGAGCAGCGGAGTCACGCCGAGGTCCTCTGAGCGTTATACGCCAGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
TGCAGCGGAATCGCGCCGAAGGCTCTGAGCGTTATACGCCAGAGTCTGACGTAAGAAACCGCCTGCACCCAAGAATCTTACCGTAGCCTGGCGAGAGTCACACAACCCGATTCTGAGCGTTATACGCCAGAGCCGGCTGGCAATAATGGTCAGTGTGGCTACGCTTCGAGAGTTAGTTTGCTTTCCGTGTCGTCTGGAATGGGCGCTGCCAACTCTAGGCACGGAGCAGCGGAGTCACGCCGAGGTCCTCTGAGCGTTATACGCCAGASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........................................................................TCTTACCGTAGCCTGGCGAGAG...........................................................................................................................................................................2221.503300000
.......................................CAGAGTCTGACGTAAGAAACCGCC.............................................................................................................................................................................................................2431.003300000
...........................................................................TCTTACCGTAGCCTGGCGAGAGT..........................................................................................................................................................................2321.002100010
...........................................................................TCTTACCGTAGCCTGGCGAGAGTC.........................................................................................................................................................................2421.002200000
..........................................................................................................................................................................AGTTAGTTTGCTTTCCGTGTCG............................................................................2220.501100000
................................................................................................................................................................................TTTGCTTTCCGTGTCGTCTGGAATGG..................................................................2620.501100000
..................................................................................................................GAGCGTTATACGCCAGAGCCGGC...................................................................................................................................2320.501000010
.........................................................................................................................................................................GAGTTAGTTTGCTTTCCGTGT..............................................................................2120.501100000
............................................................................CTTACCGTAGCCTGGCGAGAG...........................................................................................................................................................................2120.501100000
.............................................................................TTACCGTAGCCTGGCGAGAGT..........................................................................................................................................................................2120.501100000
....................................................................................................................GCGTTATACGCCAGAGCCGGCTGGCAAA............................................................................................................................2820.501100000
.......................................................................................................................................................................................TCCGTGTCGTCTGGAATGGGCGC..............................................................2320.501100000
............................................................................CTTACCGTAGCCTGGCGAG.............................................................................................................................................................................1920.501100000
...........................................................................TCTTACCGTAGCCTGGCGAGA............................................................................................................................................................................2120.501000010
..................................TACGCCAGAGTCTGACGTAAGAAACCG...............................................................................................................................................................................................................2730.331100000
...............................................GACGTAAGAAACCGCCTGCACC.......................................................................................................................................................................................................2230.331100000
.......................................CAGAGTCTGACGTAAGAAACCGCCTGC..........................................................................................................................................................................................................2730.331100000
..................................TACGCCAGAGTCTGACGTAAGAAACCGCC.............................................................................................................................................................................................................2930.331100000
...............................................GACGTAAGAAACCGCCTGCACCCA.....................................................................................................................................................................................................2430.331100000
.......................................CAGAGTCTGACGTAAGAAACCGC..............................................................................................................................................................................................................2330.331100000
.................................................CGTAAGAAACCGCCTGCACCC......................................................................................................................................................................................................2130.331000010
.................................................................................................................TGAGCGTTATACGCCAGAGCCGG....................................................................................................................................2330.331100000
.......................................CAGAGTCTGACGTAAGAAACCGCCT............................................................................................................................................................................................................2530.331100000
.........................TGAGCGTTATACGCCAGAGTCTG............................................................................................................................................................................................................................2350.201100000
.........................TGAGCGTTATACGCCAGAGTCTGACG.........................................................................................................................................................................................................................2650.201100000
..........................GAGCGTTATACGCCAGAGTCT.............................................................................................................................................................................................................................2190.111100000
..........................GAGCGTTATACGCCAGAGTCTGAA..........................................................................................................................................................................................................................2490.111100000
..........................GAGCGTTATACGCCAGAGTCTGATC.........................................................................................................................................................................................................................2590.111100000
TGCAGCGGAATCGCGCCGAAGGCTCTC.................................................................................................................................................................................................................................................2790.111100000
TGCAGCGGAATCGCGCCGAAGG......................................................................................................................................................................................................................................................22160.061100000
TGCAGCGGAATCGCGCCGAAG.......................................................................................................................................................................................................................................................21180.061100000

Generated: 05/18/2015 at 12:26 AM